Citrus Sinensis ID: 000475
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1470 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.948 | 0.920 | 0.491 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.900 | 0.874 | 0.469 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.910 | 0.913 | 0.481 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.896 | 0.882 | 0.473 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.848 | 0.828 | 0.501 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.711 | 0.993 | 0.513 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.897 | 0.857 | 0.399 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.831 | 0.841 | 0.419 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.911 | 0.883 | 0.391 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.940 | 0.944 | 0.395 | 0.0 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1306 bits (3379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1479 (49%), Positives = 988/1479 (66%), Gaps = 85/1479 (5%)
Query: 34 EILKRRRDDGYILMARRAAGLVIVLCNVLIFILYMGF-GFYEY---W--NFRIVSFKSVS 87
E LK RRD G+ + L L L+ ++ M GFY Y W N ++VS
Sbjct: 70 ESLKDRRDFGF------KSALFCSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFL 123
Query: 88 L-VVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGL 146
L +V+W V+++C R EHK+ P +L LW V +LV+ + V + + +
Sbjct: 124 LGMVSWG---VLSICLHRCRDC-EHKKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETV 179
Query: 147 P-HILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREED-----DEFLCKN 200
P H+L D V+ V L + A + L+ PLL D D+ + N
Sbjct: 180 PVHLL----VFDIVAFIAAVFLGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGDDSVELN 235
Query: 201 -------ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET----ANDASS 249
+ ++ AG+LS +TF W++ L G + L+L +P + +++ A S
Sbjct: 236 KTNGSGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRS 295
Query: 250 LLEESLRKQKTDATS---LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS 306
+LE +++ T+ + + A W+ L + A FA + T+ASY+GP LI FV +L+
Sbjct: 296 MLESPDGGERSGVTTFKLIKALYFTAQWEIL-VTAFFAFIYTVASYVGPALIDTFVQYLN 354
Query: 307 GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF 366
G+ ++ H G VL F AK VE L+QR W+F ++GIR+RSAL +IY++ + +
Sbjct: 355 GRRQYN--HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSC 412
Query: 367 A---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423
G +SG IIN + VD ERIG+F Y+H W++ +QV LAL ILY+NLG A + AAL
Sbjct: 413 QSKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLA-SIAALV 471
Query: 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483
+TI VM+ N P QERF +MEAKD+R+K+TSE L++MR+LKL WE +FL K+ L
Sbjct: 472 ATIIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDL 531
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ 543
R+ E LKKY+Y + I+F+FW +PTLVSV TFG CILL PL SG +LSALATFRILQ
Sbjct: 532 RKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQ 591
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDA 602
EPIYNLP+ ISMI QTKVSL R+ ++ DN + I E K +SDVA+++ +WD
Sbjct: 592 EPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDV 651
Query: 603 REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA 662
N PT+K + K+ G KVAVCG+VGSGKSSLLSS+LGE+P++SG+ +KV G KA
Sbjct: 652 SSSN---PTLKDIN-FKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGS-LKVCGTKA 706
Query: 663 YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
YV QS WIQ+G I +NILFGK M + Y++VLE C+L++D+E+ + GD +V+GERGINLS
Sbjct: 707 YVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLS 766
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQKQRIQ+ARA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL K+V+Y THQ+EF
Sbjct: 767 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEF 826
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV-----NPPQEDKCL 837
L AADL+LVMKDG+I Q+GKY D++ + ++ + + AH+++L V N E L
Sbjct: 827 LPAADLILVMKDGRISQAGKYNDIL-NSGTDFMELIGAHQEALAVVDSVDANSVSEKSAL 885
Query: 838 SR---VPCQMSQITEERFARPISCGEFSGRS------QDEDTELGRVKWTVYSAFITLVY 888
+ + + E+ ++ + + Q+E+ E G V VY +ITL Y
Sbjct: 886 GQENVIVKDAIAVDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAY 945
Query: 889 KGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFI 944
GALVP ILL QVLFQ LQ+GSNYW+AWAT D + V L+ V++ L+ GSS I
Sbjct: 946 GGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCI 1005
Query: 945 LGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYR 1004
L RA LL T KTA LF M +FR+P+SFFDSTPS RI++R STDQS VD ++PY+
Sbjct: 1006 LLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQ 1065
Query: 1005 LAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTAR 1064
+A +IQL+ II +MSQ +W VF +F+ ++ SIWYQ YYI AR
Sbjct: 1066 FGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQ------------RYYIAAAR 1113
Query: 1065 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1124
EL+R+VG KAP++ HFSE+I+GATTIR F+QE RF + L D YS F+ G MEW
Sbjct: 1114 ELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEW 1173
Query: 1125 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENK 1184
LC R+++L + F L+ LV++P IDPSLAGLA TYGL+LN LQAW+IW LCN+ENK
Sbjct: 1174 LCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENK 1233
Query: 1185 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1244
+ISVERILQ+ ++PSE PLVI+++RP WPS G++E+ +L V+Y P +P+VL+GITCTF
Sbjct: 1234 IISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTF 1293
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1304
G + G+VGRTGSGKSTLIQ LFR+VEPS G I IDGV+I IGL DLR RLSIIPQDP
Sbjct: 1294 KGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDP 1353
Query: 1305 MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364
+F+GT+R+NLDPLE+++D +IWE ++KC L + VR+ ++ LD+ V+E+G+NWS+GQRQL
Sbjct: 1354 TMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQL 1413
Query: 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV 1424
VCL RVLLK+ +ILVLDEATAS+DTATDN+IQ+T+RE S CTVIT+AHRI +VID+D+V
Sbjct: 1414 VCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMV 1473
Query: 1425 LVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKS 1463
L+L G + EYD+P +LLED SSSFSKLVAE+ R+S S
Sbjct: 1474 LLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSS 1512
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Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1253 bits (3243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/1397 (46%), Positives = 915/1397 (65%), Gaps = 73/1397 (5%)
Query: 112 KRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNA 171
++ P ++ +WW + I L C L+ G A + P L LCF A
Sbjct: 139 EKLPFLVRIWWFLAFSICL-CTMYVDGRRLAIEGWSRCSSHVVA-NLAVTPALGFLCFLA 196
Query: 172 TYACC---CARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQ 228
R SDL PLL EE E C ++ +++AG++S IT WL+ L G +
Sbjct: 197 WRGVSGIQVTRSSSDLQEPLLVEE--EAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKR 254
Query: 229 KLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLP----QVIIHAVWKSLALNAAFA 284
LEL IP + + A + +L+ + ++ K++ S P + I+ + WK A NA FA
Sbjct: 255 PLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFA 314
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
G+NT+ SY+GP+LI+ FV +L GK H G VLA +F +K +E++T RQWY G +
Sbjct: 315 GLNTLVSYVGPYLISYFVDYLGGKEIFP--HEGYVLAGIFFTSKLIETVTTRQWYMGVDI 372
Query: 345 IGIRVRSALTVLIYKRSM---AIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+G+ VRSALT ++Y++ + +I +SG I+N + VDV+RIGD+ Y+H IW+LP+Q
Sbjct: 373 LGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQ 432
Query: 402 VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETL 461
+ LAL ILYK++G A A A L +TI ++ PLA QE + +M AKD R++ TSE L
Sbjct: 433 IVLALAILYKSVGIA-AVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECL 491
Query: 462 KSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI 521
++MRVLKL +WE + +L +RE E L+K LY+ + + F+FW+SP V+ +TF I
Sbjct: 492 RNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSI 551
Query: 522 LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581
L T LT+G VLSALATFRILQEP+ N P+L+SM+AQTKVSL RI F++E+ ++ T
Sbjct: 552 FLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATV 611
Query: 582 PTSKA-SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL 640
+ S++AI+I+ G + WD +PT+ +MK+ KG +VAVCG+VGSGKSS +
Sbjct: 612 VIPRGLSNIAIEIKDGVFCWDPFS---SRPTLSGI-QMKVEKGMRVAVCGTVGSGKSSFI 667
Query: 641 SSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700
S ILGEIP+ISG +++ G YV QS+WIQ+G I ENILFG M ++ Y+ V++ C+L
Sbjct: 668 SCILGEIPKISGE-VRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLK 726
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+DIE+++ GD +++GERGINLSGGQKQR+QLARA+Y ++D+Y+ DDPFSA+DAHTG+ LF
Sbjct: 727 KDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLF 786
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ ++ L++KTV++ THQ+EFL AADL+LV+K+G+I QSGKY+DL+ ++ + A
Sbjct: 787 RDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLL-QAGTDFKALVSA 845
Query: 821 HRKSLDQV------------NPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGR---- 864
H ++++ + NP ++ L + + E A+ + G +
Sbjct: 846 HHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAI 905
Query: 865 ---------------SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMG 909
Q+E+ G+V VY +++ YKGAL+P+I+L Q FQ LQ+
Sbjct: 906 KEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIA 965
Query: 910 SNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965
SN+W+AWA ++ KV L+ V+ L+ GSS FI RA L+AT + AQ+LFLN
Sbjct: 966 SNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLN 1025
Query: 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025
M+ SVFRAP+SFFDSTP+ RILNR S DQS VD DIP+RL G A IQL I+ +M+
Sbjct: 1026 MLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNV 1085
Query: 1026 AWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESI 1085
WQVF L VV A + +Q YY+ ++REL R+V +K+PI+H F ESI
Sbjct: 1086 TWQVFLL------------VVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESI 1133
Query: 1086 AGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV 1145
AGA TIR F QE RF+ R+ L+D + F + +EWLCLR+ LL F +++LV
Sbjct: 1134 AGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLV 1193
Query: 1146 TLPRSAIDPSLAGLAATYGLNLN-VLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1204
+ P IDPS+AGLA TYGLNLN L W++ + C +ENK+IS+ERI Q++ I EAP +
Sbjct: 1194 SFPHGTIDPSMAGLAVTYGLNLNGRLSRWIL-SFCKLENKIISIERIYQYSQIVGEAPAI 1252
Query: 1205 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1264
I++ RP WP++G IEL ++ V+Y LP VL G++C FPG KKIG+VGRTGSGKSTLI
Sbjct: 1253 IEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLI 1312
Query: 1265 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1324
QALFR++EP+ G+I ID +DIS IGL DLRSRL IIPQDP LF+GT+R NLDPLE+HSD
Sbjct: 1313 QALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDD 1372
Query: 1325 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
+IWE ++K L ++VR LD+PV E+G+NWSVGQRQLV L R LLK+ +ILVLDEAT
Sbjct: 1373 KIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEAT 1432
Query: 1385 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
AS+DTATDN+IQ+ IR E CTV T+AHRIPTVID+DLVLVL +G+V E+D+P +LLED
Sbjct: 1433 ASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLED 1492
Query: 1445 NSSSFSKLVAEFLRRTS 1461
SS F KLV E+ R++
Sbjct: 1493 KSSMFLKLVTEYSSRST 1509
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Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1404 (48%), Positives = 932/1404 (66%), Gaps = 65/1404 (4%)
Query: 90 VTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHI 149
+TW + V L RY + ++ +L +WWV V VS Y HL + +
Sbjct: 101 LTWG-SISVYLFGRYTNSC--EQKVLFLLRVWWVFFFV-----VSCY---HLVVDFVLYK 149
Query: 150 LPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD------LDIPLLREEDDEFLCKNIST 203
E +V FV + LV +C C C + L PLL + + +
Sbjct: 150 KQEMVSVHFV-ISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAP 208
Query: 204 FASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDA----SSLLEESLRKQK 259
F+ AG+LS+++F W++ L G + +++ +P + +S+T S LE +++
Sbjct: 209 FSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERR 268
Query: 260 TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLV 319
L + + +VW+ + L+A A V T++ Y+ P+L+ NFV +L+G + + Y V
Sbjct: 269 ITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGY--V 326
Query: 320 LASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIIN 376
L + F AK VE TQRQW+F + G+ +RS L +IY++ + + G +SG IIN
Sbjct: 327 LVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIIN 386
Query: 377 MINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLA 436
++ VD +RI F ++H W+L +QV LAL ILYK+LG + AA +TI VM++N P A
Sbjct: 387 LMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLG-SIAAFPATILVMLANYPFA 445
Query: 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
+E+F S +M++KD R+K TSE L +M++LKL WE +FL K+L LR IE LKK++Y
Sbjct: 446 KLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVY 505
Query: 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
SAI + WA+P+ +S FG C+LLK PL SG +L+ALATFRILQ PIY LPE ISMI
Sbjct: 506 NSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMI 565
Query: 557 AQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT 615
QTKVSL RI F+ D+ Q+ + S +S++A++I G ++WD ++ PT++
Sbjct: 566 VQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWD---DSSPIPTLRDM 622
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI 675
+ K+ +G VA+CG+VGSGKSSLLSSILGE+P+ISG +KV G+KAY+ QS WIQ+G +
Sbjct: 623 N-FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKV 680
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
ENILFGK M + +Y+ VLE C+LN+D+E+ D +V+GERGINLSGGQKQRIQ+ARA+
Sbjct: 681 EENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARAL 740
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQ+EFL ADL+LVMKDG
Sbjct: 741 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDG 800
Query: 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARP 855
KI Q+GKY +++ D ++ + + AH ++L + D C + + S +E
Sbjct: 801 KITQAGKYHEIL-DSGTDFMELVGAHTEALATI-----DSCETGYASEKSTTDKENEVLH 854
Query: 856 ISCGEFSGRS--------QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ 907
+ +G Q+E+ E G+V +TVY ++ L Y GA++P+IL+ QVLFQ L
Sbjct: 855 HKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLS 914
Query: 908 MGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963
+GSNYW+ W T D + VS LI V++ L+ SSF IL RA+L+A K A LF
Sbjct: 915 IGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELF 974
Query: 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023
M +FRA +SFFD+TP RILNR STDQS D +P + A +A A I +L II ++
Sbjct: 975 TQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIV 1034
Query: 1024 QAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSE 1083
Q AWQV +F+ ++ WY+ YYI+ ARELAR+ G ++P++HHFSE
Sbjct: 1035 QVAWQVLIVFIPVVAACAWYR------------QYYISAARELARLAGISRSPVVHHFSE 1082
Query: 1084 SIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1143
+++G TTIR F+QE RF L D YS + FH+ G MEWLC R+ LL FAF L+I
Sbjct: 1083 TLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVI 1142
Query: 1144 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1203
LV+ P I+PSLAGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+TNIPSE PL
Sbjct: 1143 LVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPL 1202
Query: 1204 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1263
VI+ +RP WPS G+I + NL V+Y P LPMVL G+TCTFPG K G+VGRTG GKSTL
Sbjct: 1203 VIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTL 1262
Query: 1264 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1323
IQ LFR+VEP+ G I IDG++I IGL DLRSRLSIIPQDP +F+GT+R+NLDPLE+++D
Sbjct: 1263 IQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTD 1322
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+IWE ++ C L + VR+ + LD+PV+E+G+NWSVGQRQLVCL RVLLK+ ++LVLDEA
Sbjct: 1323 DQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEA 1382
Query: 1384 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
TASIDTATDN+IQ+T+R + CTVIT+AHRI +VID+D+VL+LD+G + E+DSP +LLE
Sbjct: 1383 TASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLE 1442
Query: 1444 DNSSSFSKLVAEFLRRT-SKSNRN 1466
D SS FSKLVAE+ + SKS R+
Sbjct: 1443 DRSSLFSKLVAEYTTSSESKSKRS 1466
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1238 bits (3203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/1383 (47%), Positives = 929/1383 (67%), Gaps = 65/1383 (4%)
Query: 107 TLGEHKRWPLVLVLWWVVHLVI----VLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLP 162
T +++P++L +WWV++ + +LV +++Y L S+ H+L D +++
Sbjct: 127 TYSHDQKFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSV---HLLLS----DVLAVS 179
Query: 163 LLVLLCFNA---------------TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASA 207
+ + LC++ A + + L + EDDE ++ F++A
Sbjct: 180 VGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEV----VTPFSNA 235
Query: 208 GVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDA----SSLLEESLRKQKTDAT 263
G LS ++F W++ L G + ++ +P + S+ A S LE +++
Sbjct: 236 GFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERRITTY 295
Query: 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV 323
L + + +VW+ + L+ FA V T++ Y+ P+L+ FV +L+G+ +S + G+VL +
Sbjct: 296 KLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYS--NQGVVLVTT 353
Query: 324 FLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINV 380
F AK VE +R WYF + GI +RS L +IY++ + + G +SG IIN++ V
Sbjct: 354 FFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTV 413
Query: 381 DVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440
D ERI F Y+H W+L +Q+ LAL+ILY++LG + AA +T VM+ N PLA +E
Sbjct: 414 DAERISAFSWYMHDPWILVLQISLALLILYRSLGLG-SIAAFAATFLVMLGNIPLAKLEE 472
Query: 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500
+F +ME+KD R+K TSE L +MR+LKL WE +FL K+L LR IE LKK++Y +A
Sbjct: 473 KFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAA 532
Query: 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTK 560
I+ + WA+P+ VS FG C+LLK PL SG +++ALATFRILQ PIY LP+ ISMI QTK
Sbjct: 533 ISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTK 592
Query: 561 VSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMK 619
VSL RI F+ D+ Q+ + S +S + +++ G ++WD ++ PT+K + K
Sbjct: 593 VSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWD---DSSPIPTLK-DIRFK 648
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
I G +A+CG+VGSGKSSLLSSILGE+P+ISG +KV G+KAY+ QS WIQ+G + ENI
Sbjct: 649 IPHGMNIAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKVEENI 707
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
LFGK M++ +Y+ VLE C+LN+D+E++ D +V+GERGINLSGGQKQRIQ+ARA+Y ++
Sbjct: 708 LFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDA 767
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQLEFL ADL+LVMKDG+I Q
Sbjct: 768 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQ 827
Query: 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSR-VPCQMSQITEERFARPISC 858
+GKY +++ + ++ + + AH +L V+ ++ ++ + S+++ + +
Sbjct: 828 AGKYNEIL-ESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVSNDEEKQEEDL 886
Query: 859 GEFSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWA 917
G+ Q+E+ E G+V +TVY ++ L Y GALVP+IL+ Q+LFQ L +GSNYW+AW
Sbjct: 887 PSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWV 946
Query: 918 T----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973
T D K VS LI V++FL+ SSF IL RA+L A K A LF M +FRA
Sbjct: 947 TPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRA 1006
Query: 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033
+SFFD+TP RILNR STDQS VD +P + + LA A + +L II +M Q AWQV +F
Sbjct: 1007 SMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVF 1066
Query: 1034 LVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRC 1093
+ ++ WY+ YYI+ ARELAR+ G ++P++ HFSE+++G TTIR
Sbjct: 1067 IPVIAACTWYR------------QYYISAARELARLSGISRSPLVQHFSETLSGITTIRS 1114
Query: 1094 FNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAID 1153
F+QE RF L D YS + FH MEWLC R++LL AF L L+ILV++P I+
Sbjct: 1115 FDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVIN 1174
Query: 1154 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPE 1213
PS AGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+ +IPSE LVI+++RP
Sbjct: 1175 PSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKS 1234
Query: 1214 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1273
WP G+I + NL V+Y P LPMVL+G+TCTF G K G+VGRTG GKSTLIQ LFR+VEP
Sbjct: 1235 WPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEP 1294
Query: 1274 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKC 1333
+ G I IDG++I IGL DLRSRLSIIPQ+P +F+GTVR+NLDPLE+++D +IWE ++KC
Sbjct: 1295 AAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKC 1354
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
L + +R+ + LD+PV+E+G+NWSVGQRQLVCL RVLLK+ ++L+LDEATAS+DTATD
Sbjct: 1355 QLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDT 1414
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
+IQ+T+R+ S CTVIT+AHRI +VID+D+VL+LD+G + E+DSP +LLED SSSFSKLV
Sbjct: 1415 LIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLV 1474
Query: 1454 AEF 1456
AE+
Sbjct: 1475 AEY 1477
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1224 bits (3167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/1290 (50%), Positives = 868/1290 (67%), Gaps = 42/1290 (3%)
Query: 202 STFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLR----K 257
S + +A + +ITF W+N LF G + LE +P I ++A S ++ L+ K
Sbjct: 235 SPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEK 294
Query: 258 QKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG 317
+ ++ VW+ A+NA FA VN +YIGP+LI +FV FLS K S H G
Sbjct: 295 EGPGNAFFYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNH-G 353
Query: 318 LVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGII 374
+LA FL AK VE++TQRQW FGA ++G+R+R+AL IY++ + + +SG I
Sbjct: 354 YLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEI 413
Query: 375 INMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434
IN ++VDV+RI DF Y++ IW+LP+Q+F A+ IL K+LG A AAL +T+ VM N P
Sbjct: 414 INYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLG-ALAALVTTLMVMACNYP 472
Query: 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494
L Q + S IM AKD R+KATSE LK+M++LKL +W+ +FL K+ LR+ E D L K
Sbjct: 473 LTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKS 532
Query: 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELIS 554
L + F+ W +P+L+SV+TF C+L+ LT+GAVLSALATF++LQ PI+ LP+L+S
Sbjct: 533 LRLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLS 592
Query: 555 MIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDAREENFKKPTIK 613
+ Q+KVS RI ++++ +K E SK ++++++IE G ++W E +PT+
Sbjct: 593 ALVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSW---EPESSRPTLD 649
Query: 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+ +K+ G KVAVCG+VGSGKSSLLSSILGEI ++ G ++V GK+AYVPQS WI +G
Sbjct: 650 DIE-LKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGT-VRVSGKQAYVPQSPWILSG 707
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
TIR+NILFG YE ++ CAL +D E++++GDL+ +GERGIN+SGGQKQRIQ+AR
Sbjct: 708 TIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIAR 767
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793
AVY N+D+Y+ DDPFSAVDAHTG LF+ CLMG+L KTVLY THQ+EFL AADL+LVM+
Sbjct: 768 AVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQ 827
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV----------NPPQEDKCLSRVPCQ 843
+G++ Q+GK+E+L+ QN + AH ++LD + +D S
Sbjct: 828 NGRVMQAGKFEELL-KQNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKDDTASIAESL 886
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903
+ E + + + QDE+TE G + VY A++T V G LVP I+L Q F
Sbjct: 887 QTHCDSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCF 946
Query: 904 QALQMGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTA 959
Q LQ+ SNYW+AW + K+ +++ V+ L+ GSS +L R +L+A + TA
Sbjct: 947 QMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTA 1006
Query: 960 QRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019
+ F M+ S+FRAP+SFFDSTP+ RILNR STDQS +D ++ +L AF++IQ++ I
Sbjct: 1007 ETFFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTI 1066
Query: 1020 ILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILH 1079
+MSQ AWQV +F+ + ++YQ YY TAREL+RM G +APILH
Sbjct: 1067 FVMSQVAWQVCVIFIPVAVACVFYQ------------RYYTPTARELSRMSGVERAPILH 1114
Query: 1080 HFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFL 1139
HF+ES+AGATTIR F+Q +RF+ + LID +S FH MEWL R+NLL +F F
Sbjct: 1115 HFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAF 1174
Query: 1140 VLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPS 1199
L++LVTLP I+PS+AGL TYGL+LNVLQA VIWN+CN ENKMISVERILQ++ IPS
Sbjct: 1175 SLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPS 1234
Query: 1200 EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1259
EAPLVI RP WP+ G I +L V+Y P VLK ITC FPG KKIGVVGRTGSG
Sbjct: 1235 EAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSG 1294
Query: 1260 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE 1319
KSTLIQALFR+VEPS G I+ID VDI+ IGL DLRSRL IIPQDP LF GT+R NLDPL
Sbjct: 1295 KSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLA 1354
Query: 1320 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379
Q++D EIWE I+KC L +++R LDA V E+GENWSVGQRQLVCL RVLLKK ILV
Sbjct: 1355 QYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILV 1414
Query: 1380 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1439
LDEATAS+D+ATD VIQ+ I +E TV+T+AHRI TVI++DLVLVL +G++ E+DSP
Sbjct: 1415 LDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPA 1474
Query: 1440 QLLEDNSSSFSKLVAEFLRRTSKSNRNRDL 1469
+LL+ S FSKL+ E+ R++ + DL
Sbjct: 1475 KLLQREDSFFSKLIKEYSLRSNHFAGSNDL 1504
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1097 (51%), Positives = 751/1097 (68%), Gaps = 51/1097 (4%)
Query: 378 INVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLAN 437
++VDV+RI DF Y++ IW+LP+Q+F A+ IL K+LG A AAL +T+ VM N PL
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLG-ALAALVTTLMVMACNYPLTR 59
Query: 438 RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497
Q + S IM AKD R+KATSE LK+M++LKL +W+ +FL K+ LR+ E D L K L
Sbjct: 60 LQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRL 119
Query: 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
F+ W +P+L+SV+TF C+L+ LT+GAVLSALATF++LQ PI+ LP+L+S +
Sbjct: 120 QDFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 558 QTKVSLYRIQEFIKE-DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
Q+KVS RI ++++ + QK + ++ ++ +++IE G ++W E +PT+ +
Sbjct: 180 QSKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSW---EPESSRPTLDDIE 236
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+K+ G KVA+CG+VGSGKSSL SSILGEI ++ G ++V GK+AYVPQS WI +GTIR
Sbjct: 237 -LKVKSGMKVAICGAVGSGKSSLPSSILGEIQKLKGT-VRVSGKQAYVPQSPWILSGTIR 294
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
+NILFG YE ++ CAL +D E++++GDL+ +GERGIN+SGGQKQRIQ+ARAVY
Sbjct: 295 DNILFGSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVY 354
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796
N+D+Y+ DDPFSAVDAHTG LF+ CLMG+L KTVLY THQ+EFL AADL+LVM++G+
Sbjct: 355 QNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGR 414
Query: 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPI 856
+ Q+GK+E+L+ V ++ N +E K +
Sbjct: 415 VMQAGKFEELLKQNIGFEVLTQCDSEHNISTENKKKEAKLV------------------- 455
Query: 857 SCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAW 916
QDE+TE G + VY ++T V G LVP I+L Q FQ LQ+ SNYW+AW
Sbjct: 456 ---------QDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAW 506
Query: 917 ----ATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972
+ K+ +++ V+ L+ GSS +L R +L+A + TA+ F M+ S+FR
Sbjct: 507 TAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFR 566
Query: 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032
AP+S+FDSTP+ RILNR STDQS +D ++ +L AF++IQ++ I +MSQ AWQV +
Sbjct: 567 APMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVI 626
Query: 1033 FLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIR 1092
F+ + ++Y Q YY T REL+RM G +APILHHF+ES+AGATTIR
Sbjct: 627 FIPVAVACVFY------------QRYYTPTERELSRMSGVERAPILHHFAESLAGATTIR 674
Query: 1093 CFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI 1152
F+Q +RF+ + LID +S FH MEWL R+NLL +F F L++LVTLP I
Sbjct: 675 AFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVI 734
Query: 1153 DPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSP 1212
+PS+AGL TYGL+LNVLQA VIWN+CN ENKMISVERILQ + IPSEAPLVI + RP
Sbjct: 735 NPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLD 794
Query: 1213 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1272
WP+ G I +L V+Y P VLK ITC FPG KKIGVVGRTGSGKSTLIQALFR+VE
Sbjct: 795 NWPNVGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVE 854
Query: 1273 PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1332
PS G I+ID VDI+ IGL DLRSRL IIPQD LF GT+R NLDPL Q++D+EIWE ++K
Sbjct: 855 PSHGTIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDK 914
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
C L +++R LDA V E+GENWSVGQRQLVCL RVLLKK ILVLDEATAS+D+ATD
Sbjct: 915 CQLGDVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATD 974
Query: 1393 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452
VIQ+ I +E TV+T+AHRI TVI++DLVLVL +G++ E+DSP +LL+ S FSKL
Sbjct: 975 GVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKL 1034
Query: 1453 VAEFLRRTSKSNRNRDL 1469
+ E+ R++ + DL
Sbjct: 1035 IKEYSLRSNHFAGSNDL 1051
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/1406 (39%), Positives = 829/1406 (58%), Gaps = 87/1406 (6%)
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLL-VLLCFNATY 173
PL L ++WV + V+ + +L LS L F+S PL VLL +
Sbjct: 160 PLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKG 219
Query: 174 ACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELL 233
+ S++ P + +N+S +ASA +SK + W+N L ++G L L
Sbjct: 220 STGVVVTTSNVTAPAKSNDVVVEKSENVSLYASASFISKTFWLWMNPLLRKGYKSPLNLD 279
Query: 234 HIPPIPQSETANDASSLLEESLRK-QKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASY 292
+P + A ++L E K Q+ + +I WK +A A A + Y
Sbjct: 280 QVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWKEIAFTAVLAIIRLSVIY 339
Query: 293 IGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352
+GP LI +FV F SGK S Y LVL + L AK VE L+ Q+ F + ++G+ +RS
Sbjct: 340 VGPVLIQSFVDFTSGKRSSPSQGYYLVL--ILLIAKFVEVLSTHQFNFNSQKLGMLIRST 397
Query: 353 LTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL 409
L +YK+ + + + + G I+N + VD +++ D L +H IWL+P+QV A+V+L
Sbjct: 398 LITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLL 457
Query: 410 YKNLGAAPAFAALFST---IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466
Y LG + + T +F+++ R R+ +M +D+R+KAT+E L MRV
Sbjct: 458 YNTLGPSVVTTVIGLTGIFVFILLGT----KRNNRYQFSLMMNRDSRMKATNEMLNYMRV 513
Query: 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTP 526
+K +WE F +++L+ RE+E L K+LY+ + + W++P L+S +TF + L
Sbjct: 514 IKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVK 573
Query: 527 LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586
L +G V + F+ILQEPI P+ + ++Q +SL R+ ++ + E +
Sbjct: 574 LDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGC 633
Query: 587 -SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645
+VA++I+ G ++WD ++ +P I+ + ++ KG A+ G+VGSGKSSLL+S+LG
Sbjct: 634 DGNVAVEIKDGSFSWDDEDD---EPAIENIN-FEVKKGELAAIVGTVGSGKSSLLASVLG 689
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705
E+ ++SG ++V G AYV Q+SWIQ GT+++NILFG M +S Y EVL+ C L +D+++
Sbjct: 690 EMHKLSGK-VRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQI 748
Query: 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
GD + +GERGINLSGGQKQRIQLARAVY SDVY+ DD FSAVDAHTG+ +FK+C+
Sbjct: 749 MEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVR 808
Query: 766 GLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD--QNSELVRQMKAHRK 823
G L KT+L THQ++FL D +LVM+DG I QSGKY++L++ ELV AH
Sbjct: 809 GALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELV---AAHET 865
Query: 824 SLDQVNPPQEDKCLSRVPC-----------------------QMSQITEERFARPISC-- 858
S++ V + VP + + + R R S
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMES 925
Query: 859 ---GEFSGRS-----------------QDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
E + S ++E+ E+G+V + VY + T Y + +++
Sbjct: 926 PRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVF 985
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQ--LIGVFIFLSGGSSFFILGRAVLLATIAI 956
V +QA M S+YW+A+ T K +VS + I V++ ++ S + RA + + +
Sbjct: 986 FSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGL 1045
Query: 957 KTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016
KTAQ F ++ S+ AP+SFFD+TPS RIL+R STDQ+ VD IP+ + +A LL
Sbjct: 1046 KTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLL 1105
Query: 1017 SIIILMSQAAWQVFPLFLVILG-ISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKA 1075
SI I+ Q AW F++ LG ++IWY+ YY+ ++REL R+ KA
Sbjct: 1106 SIFIVTCQYAWPTV-FFIIPLGWLNIWYR------------GYYLASSRELTRLDSITKA 1152
Query: 1076 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1135
P++HHFSESIAG TIR F ++ F + ++ + FHN G+ EWL R+ L+ ++
Sbjct: 1153 PVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSW 1212
Query: 1136 AFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1195
+ + +V LP + I P GL+ +YGL+LN + W I+ C +ENKM+SVERI QFT
Sbjct: 1213 VLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFT 1272
Query: 1196 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1255
+IP+EA IK SRP P WP G I LE++ V+Y P P+VLKG+T G +KIGVVGR
Sbjct: 1273 DIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGR 1332
Query: 1256 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1315
TGSGKSTLIQ LFR+VEPSGG+I+IDG+DI +GL DLRSR IIPQ+P+LF+GTVR+N+
Sbjct: 1333 TGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNI 1392
Query: 1316 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
DP E++SD+EIW+ + +C L ++V LD+ VA++GENWSVGQRQL+CL RV+LK+
Sbjct: 1393 DPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRS 1452
Query: 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1435
RIL LDEATAS+D+ TD +IQ+ IRE+ S CT+I++AHRIPTV+D D VLV+D GK EY
Sbjct: 1453 RILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEY 1512
Query: 1436 DSPRQLLEDNSSSFSKLVAEFLRRTS 1461
DSP +LLE S F+ LV E+ R++
Sbjct: 1513 DSPVRLLE-RQSLFAALVQEYALRSA 1537
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1273 (41%), Positives = 793/1273 (62%), Gaps = 50/1273 (3%)
Query: 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK- 259
+S FA AG+ S ++F WLN L +RG ++ LE IP + + E A SL EE+L +QK
Sbjct: 204 VSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKR 263
Query: 260 ----TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH 315
+ S+ +V + VW+ L + FA + +A GP L+ F+ G ++S+
Sbjct: 264 RLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEG---NASFR 320
Query: 316 Y-GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSS 371
Y GLVLA + F+K +ESL+QRQWYF +G+RVRS LT I K+ + + + S
Sbjct: 321 YEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSG 380
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
I+N VD RIG+F + H++W Q+ +AL IL+ ++G A F+AL I ++
Sbjct: 381 SEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVA-TFSALAVIILTVLC 439
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491
N P+A Q +F S +M ++D R+KA +E+L +M+VLKL +WE F K + +LR IE SL
Sbjct: 440 NAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSL 499
Query: 492 KKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551
K + A LFW+SP VS TF C L PL + V + +AT R++Q+P+ +P+
Sbjct: 500 KAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPD 559
Query: 552 LISMIAQTKVSLYRIQEFIK--EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKK 609
+I + Q KV+ RI F++ E + + S+ + AI I++ ++W+ E+ K
Sbjct: 560 VIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWE--EKGSTK 617
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669
P ++ +++ G KVAVCG VGSGKS+LL++ILGE P +SG I +G AYV Q++W
Sbjct: 618 PNLR-NVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGT-IDFYGTIAYVSQTAW 675
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
IQTGTIR+NILFG M + Y E ++ +L++D+E+ DGD + +GERG+NLSGGQKQRI
Sbjct: 676 IQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRI 735
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
QLARA+Y ++D+Y+ DDPFSAVDAHT + LF++ +M L+ K VL THQ++FL A D V
Sbjct: 736 QLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSV 795
Query: 790 LVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV------NPPQEDKCLSRVPCQ 843
L+M DG+I ++ Y++L+A ++ + + AHR++ NP + K ++RV
Sbjct: 796 LLMSDGEITEADTYQELLA-RSRDFQDLVNAHRETAGSERVVAVENPTKPVKEINRVISS 854
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903
S++ + +R I + E+ E G Y ++ + L QV F
Sbjct: 855 QSKVLKP--SRLI---------KQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTF 903
Query: 904 QALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963
Q+ N W+A D +VS +LI V++ + S ++ R+V + + +K++ LF
Sbjct: 904 AVGQILQNSWMAANVDNP-QVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLF 962
Query: 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023
++ S+FRAP+SF+DSTP RIL+R S+D S VD D+P+ L + + + + +++
Sbjct: 963 SQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLA 1022
Query: 1024 QAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSE 1083
WQV LF+ + + + ++ LQ YY TA+EL R+ GT ++ + +H +E
Sbjct: 1023 IVTWQV--LFVSVPMVYLAFR----------LQKYYFQTAKELMRINGTTRSYVANHLAE 1070
Query: 1084 SIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1143
S+AGA TIR F++E RF +S +LID + FH+ EWL R+ +
Sbjct: 1071 SVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFC 1130
Query: 1144 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1203
++ LP G+A +YGL+LN+ + + N C + N +ISVER+ Q+T++ EAP
Sbjct: 1131 MILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPE 1190
Query: 1204 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1263
VI+ +RP WP +G++E+ +L ++Y P+VLKGI+CTF G KIG+VGRTGSGK+TL
Sbjct: 1191 VIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1250
Query: 1264 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1323
I ALFR+VEP GG+I++DGVDIS IG+ DLRSR IIPQDP LF GTVR NLDPL QHSD
Sbjct: 1251 ISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSD 1310
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
EIWEV+ KC L E+V++ + LD+ V EDG NWS+GQRQL CL R +L++ R+LVLDEA
Sbjct: 1311 AEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEA 1370
Query: 1384 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
TASID ATD ++Q+TIR E + CTVITVAHRIPTV+D +VL + +G+++EYD P +L++
Sbjct: 1371 TASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMK 1430
Query: 1444 DNSSSFSKLVAEF 1456
D +S F KLV E+
Sbjct: 1431 DENSLFGKLVKEY 1443
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/1450 (39%), Positives = 844/1450 (58%), Gaps = 110/1450 (7%)
Query: 85 SVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVC------------ 132
+V++ V + +VV + + W L+ L+W++H V LV
Sbjct: 102 TVAVTVLLSFCSVVLCVLAFTGKRRTQRPWNLIDPLFWLIHAVTHLVIAVLVLHQKRFAA 161
Query: 133 -----------VSVYLLTHLSSI-GLPHILPEA----KAVD---FVSLPLLVLLCFNA-- 171
+S ++LT L ++ G+ H L +A +A D F S PL L +
Sbjct: 162 LNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAEDVASFFSFPLTAFLLIASVR 221
Query: 172 ------TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRG 225
T PSD + E+ D N+S +ASA V SK + W+N L +G
Sbjct: 222 GITGLVTAETNSPTKPSD---AVSVEKSD-----NVSLYASASVFSKTFWLWMNPLLSKG 273
Query: 226 RIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATS-LPQVIIHAVWKSLALNAAFA 284
L L +P + A + L E S K +++ + ++ WK + A A
Sbjct: 274 YKSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENSSHPIRTTLLRCFWKEILFTAILA 333
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
V Y+GP LI +FV F SGK Y LVL + L AK VE LT Q+ F + +
Sbjct: 334 IVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVL--ILLVAKFVEVLTTHQFNFDSQK 391
Query: 345 IGIRVRSALTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+G+ +RS L +YK+ + + + + G I+N + VD +++ D L +H IWL+P+Q
Sbjct: 392 LGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQ 451
Query: 402 VFLALVILYKNLGAAPAFAALFST---IFVMVSNTPLANRQERFHSMIMEAKDARIKATS 458
V +ALV+LY +LGA+ A + T +F+++ R + +M +D+R+KAT+
Sbjct: 452 VTVALVLLYGSLGASVITAVIGLTGVFVFILLGT----QRNNGYQFSLMGNRDSRMKATN 507
Query: 459 ETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFG 518
E L MRV+K +WE F K++L+ R++E L K+LY+ + + W++P L+S +TF
Sbjct: 508 EMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFA 567
Query: 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI-KEDNQKK 577
+ L L +G V + F+ILQEPI P+ + ++Q +SL R+ ++ ++ +
Sbjct: 568 TALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSED 627
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGK 636
+ + A+++ G ++WD E+N +P L+D K+ KG A+ G+VGSGK
Sbjct: 628 AVERALGCDGNTAVEVRDGSFSWD-DEDN--EPA--LSDINFKVKKGELTAIVGTVGSGK 682
Query: 637 SSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696
SSLL+S+LGE+ RISG ++V G YV Q+SWI+ GT+++NILFG M + Y +VL
Sbjct: 683 SSLLASVLGEMHRISGQ-VRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNV 741
Query: 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
C+L +D++M GD + +GERGINLSGGQKQRIQLARAVY DVY+ DD FSAVDAHTG
Sbjct: 742 CSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTG 801
Query: 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD--QNSEL 814
+ +FK+C+ G L KTVL THQ++FL D +LVM+DGKI +SGKY++L++ EL
Sbjct: 802 SDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGEL 861
Query: 815 VRQMKAHRKSLDQVNPPQEDKCLSRVP-----------------CQMSQITEERFARPIS 857
V AH S++ V + ++ P +S + +E +
Sbjct: 862 V---AAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSFLG 918
Query: 858 CG---EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI 914
+ S ++E+ E G+V VY + T Y + ++L + +Q M S+YW+
Sbjct: 919 SHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWL 978
Query: 915 AWATDEKRKVSREQLIGV--FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972
A+ T K +S + + + ++ ++ S + R+ + + +KTAQ F ++ S+
Sbjct: 979 AYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILH 1038
Query: 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032
AP+SFFD+TPS RIL+R STDQ+ VD IP+ L + LLSI I+ Q AW
Sbjct: 1039 APMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPT-AF 1097
Query: 1033 FLVILG-ISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTI 1091
F++ LG ++IWY+ YY+ ++REL RM KAPI+HHFSESIAG TI
Sbjct: 1098 FVIPLGWLNIWYR------------NYYLASSRELTRMDSITKAPIIHHFSESIAGVMTI 1145
Query: 1092 RCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA 1151
R F ++ F + ++D + FHN G+ EWL R+ L+ ++ + + +V LP +
Sbjct: 1146 RSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNV 1205
Query: 1152 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1211
I P GL+ +YGL+LN + + I+ C VENKM+SVERI QFT+IPSE+ K + P
Sbjct: 1206 IRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPP 1265
Query: 1212 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271
WP G + LE+L V+Y P P+VLKGIT G +K+GVVGRTGSGKSTLIQ LFR+V
Sbjct: 1266 SNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLV 1325
Query: 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN 1331
EPSGG+I+IDG+DIS +GL DLRSR IIPQ+P+LF+GTVR+N+DP EQ+SD+EIW+ +
Sbjct: 1326 EPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLE 1385
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
+C L ++V LD+ V ++GENWSVGQRQL+CL RV+LK+ R+L LDEATAS+D+ T
Sbjct: 1386 RCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQT 1445
Query: 1392 DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
D VIQ+ IRE+ + CT+I++AHRIPTV+D D VLV+D GK E+DSP +LLE S F+
Sbjct: 1446 DAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPSLFAA 1504
Query: 1452 LVAEFLRRTS 1461
LV E+ R++
Sbjct: 1505 LVQEYALRSA 1514
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1458 (39%), Positives = 837/1458 (57%), Gaps = 75/1458 (5%)
Query: 38 RRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATV 97
R R G+I +A V + C + FI ++G G N I V+ ++W V
Sbjct: 54 RGRKKGWIFVA------VAICCAITSFI-FLGVGL----NSLIHGGNDVT-EISWVACFV 101
Query: 98 VAL--CSRYYRTLGEHKRWPLVLV-LWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAK 154
+ S L +W +LV +WWV ++ LV S LL + I + IL
Sbjct: 102 EGIIWVSLAVSLLVNGSKWVNILVSVWWVSFALLDLVAKSGILLQG-NGIRILDILTLPM 160
Query: 155 AVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKIT 214
++ + + L +A C SD PLL + K + A+AG S ++
Sbjct: 161 SLLLLLCSWMNLRSSSAAAQDCSVTGLSD---PLLTKNPR----KESARLATAGFFSILS 213
Query: 215 FHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLPQ------V 268
F W+N L G + L IP + + A A ++ D +S +
Sbjct: 214 FSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRA 273
Query: 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK 328
++ +K A FA + T A P ++ FV + DH G + + K
Sbjct: 274 VVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDY--ANSDHRDLRNGFFNLACLVMLK 331
Query: 329 TVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERI 385
VESLT R WYF + R G+R+RSAL V YK+ + + G SSG I+N I VD R+
Sbjct: 332 LVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRM 391
Query: 386 GDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSM 445
G+F + H W L +Q+ L+ +L+ +GA AF L + + N P A + +
Sbjct: 392 GEFLWWFHSGWSLSLQLLLSTAVLFGVVGAG-AFPGLILLLLCGLLNLPFAKMLQNCQTQ 450
Query: 446 IMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505
M A+D R+++TSE L SM+V+KL SWE EF KK+ R+ E L K T + +FL+
Sbjct: 451 FMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLY 510
Query: 506 WASPTLVSVITFGVCILLKT-PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
W SPT+VS + F C LLK+ PL + + + LAT R++ EP+ +P+ IS I Q VS
Sbjct: 511 WMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQ 570
Query: 565 RIQEFIKEDNQKKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKG 623
R+ F+ +D K E + AS A+DI+ G + W E K PT++ ++I G
Sbjct: 571 RLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGW---EPETKIPTLR-NIHLEIKHG 626
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK 683
KVAVCG VG+GKSSLL ++LGEIP++SG +KV G AYV Q+SWIQ+GTIR+NIL+GK
Sbjct: 627 QKVAVCGPVGAGKSSLLHAVLGEIPKVSGT-VKVFGSIAYVSQTSWIQSGTIRDNILYGK 685
Query: 684 DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743
M Y ++ CAL++D+ + GDL+ +G+RGINLSGGQKQRIQLARAVY+++DVY+
Sbjct: 686 PMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADADVYL 745
Query: 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803
DDPFSAVDAHT LF +C+ L +KTV+ THQ+EFL D +LVM++G I QSGKY
Sbjct: 746 LDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQSGKY 805
Query: 804 EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSG 863
E+L+ + + + AH ++ V P ++ L + + ++R R ++ E
Sbjct: 806 EELLM-MGTAFQQLVNAHNDAV-TVLPLASNESLG----DLRKEGKDREIRNMTVVEKIE 859
Query: 864 R------------SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSN 911
+Q+E+ E G V + +I + L+ +L QV F Q S
Sbjct: 860 EEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAAST 919
Query: 912 YWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971
YW+A+A K++ LIGV+ +S S+ F+ RA+ A + +K ++ F +VF
Sbjct: 920 YWLAFAIGIP-KITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAVF 978
Query: 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031
+AP+ FFDSTP RIL R S+D + +D D+P+ + ++L + +++M+ WQV
Sbjct: 979 KAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVII 1038
Query: 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTI 1091
+ L+ L + ++Q YY+ +AREL R+ GT KAP++++ +E+ G TI
Sbjct: 1039 IALLALAAT------------KVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTI 1086
Query: 1092 RCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA 1151
R F RF +L+D + + F + MEW+ LRI L N F ++L+ +P+
Sbjct: 1087 RAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGY 1146
Query: 1152 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1211
I P L GL+ +Y L L Q ++ C + N +ISVERI Q+ NIP E P +I + RP
Sbjct: 1147 IAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPP 1206
Query: 1212 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271
WPS+G I L+ L ++Y P P+VLKGI+CTF ++GVVGRTGSGKSTLI ALFR+V
Sbjct: 1207 SSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLV 1266
Query: 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN 1331
EP+ G ILIDG+DIS IGL+DLR +LSIIPQ+P LF+G +RTNLDPL +SD EIW+ +
Sbjct: 1267 EPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALE 1326
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
KC L + LD+ V+++GENWSVGQRQL CL RVLLK+ +ILVLDEATASID+AT
Sbjct: 1327 KCQLKTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSAT 1386
Query: 1392 DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
D +IQ+ IREE + CTVITVAHR+PTVID+D+V+VL G ++EY+ P +L+E + S FSK
Sbjct: 1387 DAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMETD-SYFSK 1445
Query: 1452 LVAEFLRRTSKSNRNRDL 1469
LVAE+ + + N +++L
Sbjct: 1446 LVAEYW-ASCRGNSSQNL 1462
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1470 | ||||||
| 255547892 | 1464 | multidrug resistance-associated protein | 0.972 | 0.976 | 0.736 | 0.0 | |
| 224102345 | 1361 | multidrug resistance protein ABC transpo | 0.906 | 0.979 | 0.745 | 0.0 | |
| 225425888 | 1462 | PREDICTED: ABC transporter C family memb | 0.968 | 0.974 | 0.705 | 0.0 | |
| 449435456 | 1444 | PREDICTED: ABC transporter C family memb | 0.948 | 0.966 | 0.695 | 0.0 | |
| 449525006 | 1444 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.948 | 0.966 | 0.694 | 0.0 | |
| 356528244 | 1454 | PREDICTED: ABC transporter C family memb | 0.974 | 0.984 | 0.668 | 0.0 | |
| 356510881 | 1452 | PREDICTED: ABC transporter C family memb | 0.976 | 0.988 | 0.665 | 0.0 | |
| 297738346 | 1363 | unnamed protein product [Vitis vinifera] | 0.910 | 0.981 | 0.655 | 0.0 | |
| 357131484 | 1502 | PREDICTED: ABC transporter C family memb | 0.968 | 0.947 | 0.589 | 0.0 | |
| 56784517 | 1487 | putative MRP-like ABC transporter [Oryza | 0.961 | 0.950 | 0.597 | 0.0 |
| >gi|255547892|ref|XP_002515003.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] gi|223546054|gb|EEF47557.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2136 bits (5535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1072/1456 (73%), Positives = 1226/1456 (84%), Gaps = 26/1456 (1%)
Query: 20 NVAFFIGLFTRLWIEILKRRRDDGYILMARRAA------GLVIVLCNVLIFILYMGFGFY 73
NVAF++ L L ++ILK RR + +A + VLCNV++ I +GFGF
Sbjct: 27 NVAFWVLLLAWLLMDILKGRRGGSDLDKENKAVEGSKLFTRITVLCNVILLIFNLGFGFR 86
Query: 74 EYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCV 133
EY + R ++ KS+ TW LATVV S+ R + E +WPLVL+LWWV ++ V
Sbjct: 87 EYLDRRDINCKSI----TWILATVVVFYSQQ-RNVREGNKWPLVLILWWVFSCIMYSASV 141
Query: 134 SVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREED 193
S+Y +TH SSI LP+ LP+ V+F+S P +LLC A C R + L PLL+EE
Sbjct: 142 SIYFITHFSSIQLPNPLPKPNIVEFISFPFSILLCCLALRFSCSTRIGTGLKQPLLQEER 201
Query: 194 DEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEE 253
L K+ S+F +AG+ S+ITF WLN LF+RGRIQKLEL +IP +PQSETA +SSLLEE
Sbjct: 202 KRVL-KDSSSFTTAGIWSQITFQWLNPLFRRGRIQKLELSNIPLVPQSETAKCSSSLLEE 260
Query: 254 SLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS 313
SL K+K ++++LP+ I +AVWKSLA+N FAGVNTIASY+GP LIT+FV+FLS +H+ S
Sbjct: 261 SLGKRKNESSNLPKAIAYAVWKSLAINGVFAGVNTIASYMGPLLITSFVNFLSEEHEDSG 320
Query: 314 YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGI 373
Y YGL+LA +F +KT+ESLT+RQWYFGA RIGIRVRSAL V+IYK+S+++KF+GPS+G
Sbjct: 321 YLYGLILAFIFFMSKTIESLTERQWYFGAQRIGIRVRSALMVMIYKKSLSVKFSGPSNGT 380
Query: 374 IINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433
IINMINVDVERIGDF IHR+WLLP+QVFLALVILYKNLGAAP+ AAL STIF+MVSNT
Sbjct: 381 IINMINVDVERIGDFCWNIHRVWLLPLQVFLALVILYKNLGAAPSIAALSSTIFIMVSNT 440
Query: 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKK 493
PLAN+QE HS IMEAKD+RIKATSETLKSMRVLKL SWE EFL KLL+LREIER+ L+
Sbjct: 441 PLANKQEELHSDIMEAKDSRIKATSETLKSMRVLKLYSWESEFLTKLLQLREIERNKLRS 500
Query: 494 YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELI 553
YLYT SAIAFLFWASPTLVSVITFGVCILLK PLT+G VLSALATFRILQEPIYNLPELI
Sbjct: 501 YLYTSSAIAFLFWASPTLVSVITFGVCILLKIPLTTGTVLSALATFRILQEPIYNLPELI 560
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIK 613
SMIAQTKVS+YRIQEFIK++ Q+K I+ S+ASD+AI+IE GEYAW+ + + +KP IK
Sbjct: 561 SMIAQTKVSVYRIQEFIKDEGQRKQISYHNSQASDIAIEIETGEYAWERSDRDIRKPIIK 620
Query: 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+T+K+KIMKG KVAVCGSVGSGKSSLL SILGEIPRISGA IKV+GKKAYVPQS+WIQTG
Sbjct: 621 ITEKLKIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGAGIKVYGKKAYVPQSAWIQTG 680
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
++EN+LFGKDM ++FYE+V+EGCALNQDI +W GDL+V+GERGINLSGGQKQRIQLAR
Sbjct: 681 IVKENVLFGKDMDKAFYEDVMEGCALNQDIRIWTHGDLTVIGERGINLSGGQKQRIQLAR 740
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793
AVYSNSDVYI DDPFSAVDAHTGTHLFK+CL LLSQKTV+Y THQLEF+DAADLVLVMK
Sbjct: 741 AVYSNSDVYILDDPFSAVDAHTGTHLFKKCLAQLLSQKTVIYATHQLEFVDAADLVLVMK 800
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ--ITEER 851
DG I QSGKYEDLIAD SELVRQM AH+KSL+QVNPP ED L+ V CQ++Q +TEE
Sbjct: 801 DGIIVQSGKYEDLIADPTSELVRQMAAHKKSLNQVNPPPEDNALTSVACQLNQNEVTEEE 860
Query: 852 FARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSN 911
PIS S +Q+E+TE GRVKW+VYS F+T YKGALVPVILLCQV FQ LQMGSN
Sbjct: 861 LEEPISNSRLSEGTQEEETETGRVKWSVYSTFVTSAYKGALVPVILLCQVFFQGLQMGSN 920
Query: 912 YWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971
YWIAWA++++ K+SREQLIG+F+ LSGGSS FILGRAVLLA+IA++TAQRLFL MI S+F
Sbjct: 921 YWIAWASEDRHKISREQLIGIFVLLSGGSSIFILGRAVLLASIAVETAQRLFLGMIKSIF 980
Query: 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031
RAPISFFDSTPSSRILNR S DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ AWQ+F
Sbjct: 981 RAPISFFDSTPSSRILNRSSMDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQVAWQIFI 1040
Query: 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTI 1091
LFLVILGIS+WY QAYYITTARELARMVG RKAPILHHFSESIAGA TI
Sbjct: 1041 LFLVILGISLWY------------QAYYITTARELARMVGIRKAPILHHFSESIAGAATI 1088
Query: 1092 RCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA 1151
CFNQ++RFL+R+ SLIDDYS + FHN GTMEWLCLRIN LFN FFLVLIILV LPRSA
Sbjct: 1089 HCFNQQDRFLMRNLSLIDDYSRIVFHNTGTMEWLCLRINFLFNLVFFLVLIILVNLPRSA 1148
Query: 1152 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1211
IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI++SRP+
Sbjct: 1149 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIEDSRPN 1208
Query: 1212 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271
P+WP G+IEL NL VQY+P+LPMVLK ITC FPG KKIGVVGRTGSGKSTLIQALFRV+
Sbjct: 1209 PKWPVDGRIELVNLCVQYSPSLPMVLKSITCIFPGGKKIGVVGRTGSGKSTLIQALFRVI 1268
Query: 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN 1331
EPS G+ILIDG DIS IGL+DLRS L IIPQDP LFQGTVRTNLDPL++HSD EIWEV+
Sbjct: 1269 EPSEGQILIDGQDISKIGLRDLRSGLGIIPQDPTLFQGTVRTNLDPLQEHSDHEIWEVLK 1328
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
KC LA+IVRQD RLL+APVAEDGENWSVGQRQLVCLARVLLKK+RILVLDEATASIDTAT
Sbjct: 1329 KCRLADIVRQDSRLLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTAT 1388
Query: 1392 DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
DN+IQ IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV+EYD P QLL+D+SSSFSK
Sbjct: 1389 DNIIQGAIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVIEYDCPGQLLKDSSSSFSK 1448
Query: 1452 LVAEFLRRTSKSNRNR 1467
LVAEFLRR+SK +R
Sbjct: 1449 LVAEFLRRSSKRTSHR 1464
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102345|ref|XP_002312645.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222852465|gb|EEE90012.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2083 bits (5397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1024/1374 (74%), Positives = 1156/1374 (84%), Gaps = 41/1374 (2%)
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLV+VLWWV + + + VS++L+T SSI LP+ PEA DF SLPLLVLLCFNA
Sbjct: 1 PLVIVLWWVFYCIFDSLSVSIHLITRFSSIELPYPWPEANIADFASLPLLVLLCFNAVTF 60
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
C + DL+IPLL+E+ E L K+ + + SAG+ SK+TF WLN LF GRI+KLEL H
Sbjct: 61 SCSTKTHDDLEIPLLQEKR-ESLFKDSTCYRSAGIWSKLTFKWLNPLFSSGRIEKLELSH 119
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
+PP+P SETA ASSLLE+S K K + +LP+ I +AVWKSL +N FAGVNTIASY G
Sbjct: 120 VPPVPASETAKYASSLLEDSFGKNKKETLNLPKAIAYAVWKSLTINGVFAGVNTIASYTG 179
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LITNFV+FLS HD S + GLVLA VF F+KTVES+TQRQWYFG RIGIRVR+AL+
Sbjct: 180 PLLITNFVNFLSENHDDSGHIPGLVLAFVFFFSKTVESVTQRQWYFGTQRIGIRVRAALS 239
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
VL+YK+S+++KFAG S+G IINMINVDVERIGDF IH +WLLP QVFLALVILY NLG
Sbjct: 240 VLVYKKSLSVKFAGSSNGKIINMINVDVERIGDFCWNIHGVWLLPFQVFLALVILYINLG 299
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AAL STI VMVSNTPLA++QER HS IMEAKD+RIKATSETLKSMRVLKL SWE
Sbjct: 300 AAPSIAALSSTILVMVSNTPLASKQERLHSRIMEAKDSRIKATSETLKSMRVLKLYSWEP 359
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKKLL+LRE ER+ L+KYLYT SAIAFLFWASPTLVSV+TFGVCILLKTPLT+G VLS
Sbjct: 360 TFLKKLLQLRETERNWLRKYLYTSSAIAFLFWASPTLVSVVTFGVCILLKTPLTTGTVLS 419
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
ALATFRILQEPIYNLPELISMIAQTKVS+ RIQ+F+ ED+QKK I S+ASD+ I+++
Sbjct: 420 ALATFRILQEPIYNLPELISMIAQTKVSIDRIQDFLSEDDQKKQIPYQASQASDITIEMK 479
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEYAW+ ++N KPTIK+T MKIMKG KVAVCGSVGSGKSSLL SILGEIP ISGA
Sbjct: 480 CGEYAWETIDQNSTKPTIKITKNMKIMKGYKVAVCGSVGSGKSSLLCSILGEIPMISGAG 539
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQTGT+R+N+LFGKDM + YE+VLEGCALNQDIE+WADGDL+VV
Sbjct: 540 VKVHGTKAYVPQSAWIQTGTVRDNVLFGKDMSKEIYEDVLEGCALNQDIEIWADGDLTVV 599
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK------------- 761
GERG+NLSGGQKQRIQLARAVYSNSDVYI DDPFSAVDAHTGTHLFK
Sbjct: 600 GERGMNLSGGQKQRIQLARAVYSNSDVYILDDPFSAVDAHTGTHLFKARIFLIFFCFLFI 659
Query: 762 -------------QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+CLM LLSQKTV+Y THQLEFLDAADLVLV KDG I QSGKYEDLIA
Sbjct: 660 SRATLLPCRYSHLKCLMQLLSQKTVIYATHQLEFLDAADLVLVTKDGVIVQSGKYEDLIA 719
Query: 809 DQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ--ITEERFARPISCGEFSGRSQ 866
D ELVRQM AHR+SL+QVNPPQED + Q++Q +TEE+F P FS ++Q
Sbjct: 720 DPTGELVRQMAAHRRSLNQVNPPQEDNPFTGGSSQLNQNEVTEEKFEGPTGTDRFSRKTQ 779
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR 926
+E +E GRVKW+VYS FIT YKGALVP+ILLCQVLFQ LQMGSNYWIAWAT++ V+R
Sbjct: 780 EEVSETGRVKWSVYSTFITSAYKGALVPIILLCQVLFQGLQMGSNYWIAWATEKSHNVTR 839
Query: 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRI 986
E+LIG+FI LSGGSS FILGRAVLLATIA++TAQRLF MI+S+F+A ISFFD+TPSSRI
Sbjct: 840 EKLIGIFILLSGGSSIFILGRAVLLATIAVETAQRLFFGMISSIFQATISFFDATPSSRI 899
Query: 987 LNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVV 1046
L+R STDQSTVDTDIPYRLAGLAFALIQLL I+ILMSQ AWQVFP+FLVILGISIWY
Sbjct: 900 LSRSSTDQSTVDTDIPYRLAGLAFALIQLLCIVILMSQVAWQVFPIFLVILGISIWY--- 956
Query: 1047 NTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1106
QAYYITTARELARMVG RKAPILHHFSESI GA TIRCFNQE RFL+RS S
Sbjct: 957 ---------QAYYITTARELARMVGIRKAPILHHFSESITGAATIRCFNQEERFLMRSLS 1007
Query: 1107 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLN 1166
LIDDYS + FHN GTMEWLC+RIN LFN FFLVLIILV LP+SAIDPSLAGLAATYGLN
Sbjct: 1008 LIDDYSRIVFHNSGTMEWLCIRINFLFNLGFFLVLIILVNLPKSAIDPSLAGLAATYGLN 1067
Query: 1167 LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLL 1226
LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI++ RP PEWP G++EL L
Sbjct: 1068 LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIEDCRPKPEWPVDGRVELIGLD 1127
Query: 1227 VQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1286
VQY+P+LP VLKGITCTFPG KKIGVVGRTGSGKSTLIQALFRV+EPSGG+ILIDG+DIS
Sbjct: 1128 VQYSPSLPKVLKGITCTFPGGKKIGVVGRTGSGKSTLIQALFRVIEPSGGQILIDGLDIS 1187
Query: 1287 MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1346
IGL+DLRS+L IIPQDP LF+GTVRTNLDPLE+HSDQEIWEV+NKC LA+IV++D+RLL
Sbjct: 1188 KIGLRDLRSKLGIIPQDPTLFRGTVRTNLDPLEKHSDQEIWEVLNKCRLADIVKRDKRLL 1247
Query: 1347 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC 1406
DAPV+EDGENWSVGQRQLVCLARVLLKK+RILVLDEATASID TDN+IQ TIREETSRC
Sbjct: 1248 DAPVSEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDIETDNIIQGTIREETSRC 1307
Query: 1407 TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
TVITVAHRIPTVIDNDL+LVL++GKV+EYDSP +LL+DNSSSFSKLV EFLRR+
Sbjct: 1308 TVITVAHRIPTVIDNDLILVLEDGKVVEYDSPVKLLKDNSSSFSKLVIEFLRRS 1361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425888|ref|XP_002266601.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2049 bits (5308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1029/1458 (70%), Positives = 1190/1458 (81%), Gaps = 34/1458 (2%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGY-------ILMARRAAGLVIVLCNVLIFI 65
D L +NVAFF L T + + +L++RRD G + +V VL N +I +
Sbjct: 15 DSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICV 74
Query: 66 LYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH 125
++GF YE+W+ ++ + +TW LA ++ + T E+KRWPL+L WWV
Sbjct: 75 SHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFS 134
Query: 126 LVIVLVCVSVYLLTHLSSIGLPHI----LPEAKAVDFVSL-PLLVLLCFNATYACCCARD 180
++ + VSVYL+T L + LP +P+A DF SL PL +LLCFN C +
Sbjct: 135 SILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNV-LPFNCGKK 193
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
SDL+ PLL E L + ++SAG+ SK+TF WLN LF++GR+QK++L HIPP+PQ
Sbjct: 194 RSDLEHPLLESEGGN-LSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQ 252
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SE A ASSLLEE+L KQKT T + + +VW+SLA+NA FAG NTIASY+GPFLIT+
Sbjct: 253 SEKAETASSLLEETLTKQKTSVT---KALFCSVWRSLAINAVFAGANTIASYMGPFLITH 309
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FLSGK D SSY+YGLVLA +F AKT+ESL+QRQWY G RIGIRVR+AL VL+YK+
Sbjct: 310 FVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKK 369
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S++IK+AG +SG IIN+INVDV+RIGDF L IH +WLLPVQV LALVILY+NLGAAP+
Sbjct: 370 SLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMT 429
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
ALF+T+ VMV NTPLA RQER HS IMEAKD+RIKATSETLKSMRVLKL SWE FL K+
Sbjct: 430 ALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKI 489
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
LRE ER LK+YLYTCSA+AFLFW SPTLVSVITF VCI+LKTPLT+G VLSALATFR
Sbjct: 490 KELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCIVLKTPLTTGRVLSALATFR 549
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
ILQEPIYNLPELISMIAQTKVS+ RIQ FI+E++QKK T PTS++S+V+IDIE GEYAW
Sbjct: 550 ILQEPIYNLPELISMIAQTKVSMNRIQLFIQEEDQKKLATYPTSESSEVSIDIEVGEYAW 609
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+EN K PTIK+ +M IMKG KVAVCGSVGSGKSSLL SILGEIPRISG KV+G
Sbjct: 610 TC-DENLK-PTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGS 667
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
KAYVPQS+WIQTGTIR+N+LFGK++ ++FYE+VLE CAL++DI++W +GDLSVVGERG+N
Sbjct: 668 KAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMN 727
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARA+YS SDVY DDPFSAVDAHTG HLF++CLM +LSQKTV+Y THQL
Sbjct: 728 LSGGQKQRIQLARAIYSESDVYFLDDPFSAVDAHTGAHLFQKCLMQILSQKTVIYVTHQL 787
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFLDA+DLVLVMKDG I QSGKYEDLIAD NSELVRQM AH KSLDQVNP QE+ C +
Sbjct: 788 EFLDASDLVLVMKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQEN-CFTNK 846
Query: 841 PCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
P Q +I EE PIS G+ E+TE GRVKW VYS FIT YKG LVPVILL
Sbjct: 847 PPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILL 906
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQVLFQ LQMGSNYWIAWAT+E+ +VSREQLIGVF LSGGSS FILGRAVLL+TIAI+T
Sbjct: 907 CQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIET 966
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
A+ LF MI +VFRAP+SFFDSTPSS+ILNR STDQSTVDTDIPYRLAGLAFALIQLLSI
Sbjct: 967 ARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSI 1026
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPIL 1078
I+LMSQ AWQVF LF+ IL ISIWYQ AYYI TARELARMVG RKAPIL
Sbjct: 1027 IVLMSQVAWQVFLLFVSILAISIWYQ------------AYYIATARELARMVGVRKAPIL 1074
Query: 1079 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1138
HHFSES+AGA TIRCF+Q++RFL R+ SLIDDYS V FHN TMEWLC+RIN LFN FF
Sbjct: 1075 HHFSESVAGAATIRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFF 1134
Query: 1139 LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1198
LVL+ILV+LPRSAI PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT IP
Sbjct: 1135 LVLVILVSLPRSAISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIP 1194
Query: 1199 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1258
SEAPLVI+N RPS EWPS+G+I+L+NL V+Y PTLPMVLKGITCTFPGE+KIGVVGRTGS
Sbjct: 1195 SEAPLVIENCRPSLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGS 1254
Query: 1259 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL 1318
GKSTLIQALFRVVEPS G+ILIDGVDIS +GL+DLRSRLSIIPQDP LFQGT+RTNLDPL
Sbjct: 1255 GKSTLIQALFRVVEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPL 1314
Query: 1319 EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
+HSDQEIWEV+NKC LAEI+ QD+ LL+A VAEDGENWSVGQRQLVCLARVLL++++IL
Sbjct: 1315 GEHSDQEIWEVLNKCRLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRRKIL 1374
Query: 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438
VLDEATAS+DTATDN+IQ+TIREETS+CTVITVAHRIPTVIDNDLVLVLDEGKV+EYDSP
Sbjct: 1375 VLDEATASVDTATDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVEYDSP 1434
Query: 1439 RQLLEDNSSSFSKLVAEF 1456
QLL+D+SS+FSKLV EF
Sbjct: 1435 PQLLKDSSSAFSKLVMEF 1452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435456|ref|XP_004135511.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 982/1412 (69%), Positives = 1159/1412 (82%), Gaps = 17/1412 (1%)
Query: 55 VIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW 114
+ V CNV+I L GF +EYWN RIV ++SV +TW LA +A R L E K W
Sbjct: 33 ITVFCNVVISFLLSGFVAFEYWNHRIVCWESVISALTWILAAAIAFYWRKVMYL-EGKNW 91
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLVL LWW L +YLLT L S+ PH LP+A VDFVS L ++C A
Sbjct: 92 PLVLTLWWGFSCFYGLCASIIYLLTRLKSMEFPHFLPKATIVDFVSFTLSFIICCTALTV 151
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
R +DL+ LL ++D++ ++ F S G+ S+ITF WLN LF+RGR QKLEL+H
Sbjct: 152 NYSKRH-NDLEKSLL-QKDNDCSSEDGGGFISPGLWSRITFQWLNPLFKRGRNQKLELVH 209
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
IP +PQSETA ASSLLEESL+++K + +SLP I A WKSL L A FAG NT+AS++G
Sbjct: 210 IPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIFLATWKSLVLTAIFAGFNTLASFMG 269
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LIT+FV++L GK D SS GL+LA F FAKT+ESL QRQWYFG +R GI+VR+ALT
Sbjct: 270 PLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTMESLAQRQWYFGTHRAGIQVRAALT 329
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
V+IYK+S++I AGPS+G IIN+INVDVERIGDF YIH+IWLLPVQ+ LALVILY+NLG
Sbjct: 330 VMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLG 389
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AL +TIF+MVSNTPLAN QE HS IM+AKD+RIK TSETLK+MRVLKL SWEQ
Sbjct: 390 AAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQ 449
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKK+L+LRE+ER LK+YLYTCS IAFLFW SPTLVSV TFG C+++K PLT+G VLS
Sbjct: 450 TFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFGACVMMKVPLTAGTVLS 509
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
A+ATFRILQEPIYNLPELISMIAQTKVSL RIQEFI+E++Q+K I P S SDVAI++E
Sbjct: 510 AIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYYPPSNPSDVAIEME 569
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A ++NFKKPTIK+ +KM+I KG KVAVCGSVGSGKSSLL SILGEIP++SG
Sbjct: 570 VGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQ 629
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQ+GT+REN+LFGK++ + FYE+VLE CALNQDI++W DGD S++
Sbjct: 630 MKVHGSKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCSLL 689
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARAVYS++DVY DDPFSAVDA TGTHLFK+CL+ LLS KTV+
Sbjct: 690 GERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVV 749
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y TH LEF++AADLVLVMK+G+I QSGKY +L++D N EL R + AHR+ L+ V P +ED
Sbjct: 750 YATHHLEFIEAADLVLVMKNGQIVQSGKYGELMSDSNGELARHIAAHRRFLNGVKPFKED 809
Query: 835 KCLSRVPCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
K + P + QI +E + + G S R+Q+E+ + GRVKW+VYS FIT YKGAL
Sbjct: 810 KPHHKRPRKTHQIEVLDENSSLSLGNGSQSVRTQEEEIQTGRVKWSVYSTFITSAYKGAL 869
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
VP+ILLCQVLFQ LQMGSNYWI+WAT+E+ KVSREQL+G+FI +SGGSS FILGRAVL+A
Sbjct: 870 VPIILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFILMSGGSSIFILGRAVLMA 929
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQR+FL M+TS+F APISFFD+ PSS+ILNR STDQST+DTDIPYRL GLAFAL
Sbjct: 930 TIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFAL 989
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGT 1072
IQLLSIIILMS+ AWQVFPLFLV+L ISIWY Q YYI+TARELARMVG
Sbjct: 990 IQLLSIIILMSKVAWQVFPLFLVVLAISIWY------------QGYYISTARELARMVGI 1037
Query: 1073 RKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1132
RKAPILHHFSE++ GAT IRCFNQE+RFL + +L+DDYS V FHN +MEWLCLRIN L
Sbjct: 1038 RKAPILHHFSETVVGATIIRCFNQEDRFLKKILNLVDDYSRVVFHNSTSMEWLCLRINFL 1097
Query: 1133 FNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192
F+ FFL LIILVTLPR+AIDPSLAGLAATYGLN+NVLQAWVIWNLCNVENKMISVERIL
Sbjct: 1098 FDVVFFLALIILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERIL 1157
Query: 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGV 1252
QFTNI SEAP +I++ RP PEWP GKIELENL VQY P LP+VL+GITCTFP +KKIGV
Sbjct: 1158 QFTNIASEAPPIIEDCRPMPEWPKEGKIELENLQVQYRPDLPLVLRGITCTFPEKKKIGV 1217
Query: 1253 VGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1312
VGRTGSGKSTLIQ LFR+VEPS GRILIDGVDI IGL DLRS+L IIPQDP LFQGT+R
Sbjct: 1218 VGRTGSGKSTLIQTLFRLVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMR 1277
Query: 1313 TNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372
TNLDPL+QHSDQEIWEV++KC +EI+R DQ +L+A VAEDGENWSVGQRQLVCLARVLL
Sbjct: 1278 TNLDPLQQHSDQEIWEVLHKCRFSEIIRTDQAILEARVAEDGENWSVGQRQLVCLARVLL 1337
Query: 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432
KK+RILVLDEATASIDTAT+N+IQ+TI+EET+ CTVITVAHRIPT+IDNDLVLVLDEGKV
Sbjct: 1338 KKRRILVLDEATASIDTATENIIQETIKEETNGCTVITVAHRIPTIIDNDLVLVLDEGKV 1397
Query: 1433 LEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSN 1464
+E+DSP QLL++NSS FSKLVAEFLRR+S S+
Sbjct: 1398 IEFDSPSQLLKNNSSMFSKLVAEFLRRSSSSH 1429
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525006|ref|XP_004169512.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1975 bits (5116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1412 (69%), Positives = 1159/1412 (82%), Gaps = 17/1412 (1%)
Query: 55 VIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW 114
+ V CNV+I L GF +EYWN RIV ++SV +TW LA +A R L E K W
Sbjct: 33 ITVFCNVVISFLLSGFVAFEYWNHRIVCWESVISALTWILAAAIAFYWRKVMYL-EGKNW 91
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLVL LWW L +YLLT L S+ PH LP+A VDFVS L ++C A
Sbjct: 92 PLVLTLWWGFSCFYGLCASIIYLLTRLKSMEFPHFLPKATIVDFVSFTLSFIICCTALTV 151
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
R +DL+ LL ++D++ ++ F S G+ S+ITF WLN LF+RGR QKLEL+H
Sbjct: 152 NYSKRH-NDLEKSLL-QKDNDCSSEDGGGFISPGLWSRITFQWLNPLFKRGRNQKLELVH 209
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
IP +PQSETA ASSLLEESL+++K + +SLP I A WKSL L A FAG NT+AS++G
Sbjct: 210 IPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIXLATWKSLVLTAIFAGFNTLASFMG 269
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LIT+FV++L GK D SS GL+LA F FAKT+ESL QRQWYFG +R GI+VR+ALT
Sbjct: 270 PLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTMESLAQRQWYFGTHRAGIQVRAALT 329
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
V+IYK+S++I AGPS+G IIN+INVDVERIGDF YIH+IWLLPVQ+ LALVILY+NLG
Sbjct: 330 VMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLG 389
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AL +TIF+MVSNTPLAN QE HS IM+AKD+RIK TSETLK+MRVLKL SWEQ
Sbjct: 390 AAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQ 449
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKK+L+LRE+ER LK+YLYTCS IAFLFW SPTLVSV TFG C+++K PLT+G VLS
Sbjct: 450 TFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFGACVMMKVPLTAGTVLS 509
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
A+ATFRILQEPIYNLPELISMIAQTKVSL RIQEFI+E++Q+K I P S SDVAI++E
Sbjct: 510 AIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYYPPSNPSDVAIEME 569
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A ++NFKKPTIK+ +KM+I KG KVAVCGSVGSGKSSLL SILGEIP++SG
Sbjct: 570 VGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQ 629
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQ+GT+REN+LFGK++ + FYE+VLE CALNQDI++W DGD S++
Sbjct: 630 MKVHGSKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCSLL 689
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARAVYS++DVY DDPFSAVDA TGTHLFK+CL+ LLS KTV+
Sbjct: 690 GERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVV 749
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y TH LEF++AADLVLVMK+G+I QSGKY +L++D N EL R + AHR+ L+ V P +ED
Sbjct: 750 YATHHLEFIEAADLVLVMKNGQIVQSGKYGELMSDSNGELARHIAAHRRFLNGVKPFKED 809
Query: 835 KCLSRVPCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
K + P + QI +E + + G S R+Q+E+ + GRVKW+VYS FIT YKGAL
Sbjct: 810 KPHHKRPRKTHQIEVLDENSSLSLGNGSQSVRTQEEEIQTGRVKWSVYSTFITSAYKGAL 869
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
VP+ILLCQVLFQ LQMGSNYWI+WAT+E+ KVSREQL+G+FI +SGGSS FILGRAVL+A
Sbjct: 870 VPIILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFILMSGGSSIFILGRAVLMA 929
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQR+FL M+TS+F APISFFD+ PSS+ILNR STDQST+DTDIPYRL GLAFAL
Sbjct: 930 TIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFAL 989
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGT 1072
IQLLSIIILMS+ AWQVFPLFLV+L ISIWY Q YYI+TARELARMVG
Sbjct: 990 IQLLSIIILMSKVAWQVFPLFLVVLAISIWY------------QGYYISTARELARMVGI 1037
Query: 1073 RKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1132
RKAPILHHFSE++ GAT IRCFNQE+RFL + +L+DDYS V FHN +MEWLCLRIN L
Sbjct: 1038 RKAPILHHFSETVVGATIIRCFNQEDRFLKKXLNLVDDYSRVVFHNSTSMEWLCLRINFL 1097
Query: 1133 FNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192
F+ FFL LIILVTLPR+AIDPSLAGLAATYGLN+NVLQAWVIWNLCNVENKMISVERIL
Sbjct: 1098 FDVVFFLALIILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERIL 1157
Query: 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGV 1252
QFTNI SEAP +I++ RP PEWP GKIELENL VQY P LP+VL+GITCTFP ++KIGV
Sbjct: 1158 QFTNIASEAPPIIEDCRPMPEWPKEGKIELENLQVQYRPDLPLVLRGITCTFPXKEKIGV 1217
Query: 1253 VGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1312
VGRTGSGKSTLIQ LFR+VEPS GRILIDGVDI IGL DLRS+L IIPQDP LFQGT+R
Sbjct: 1218 VGRTGSGKSTLIQTLFRLVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMR 1277
Query: 1313 TNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372
TNLDPL+QHSDQEIWEV++KC +EI+R DQ +L+A VAEDGENWSVGQRQLVCLARVLL
Sbjct: 1278 TNLDPLQQHSDQEIWEVLHKCRFSEIIRTDQAILEARVAEDGENWSVGQRQLVCLARVLL 1337
Query: 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432
KK+RILVLDEATASIDTAT+N+IQ+TI+EET+ CTVITVAHRIPT+IDNDLVLVLDEGKV
Sbjct: 1338 KKRRILVLDEATASIDTATENIIQETIKEETNGCTVITVAHRIPTIIDNDLVLVLDEGKV 1397
Query: 1433 LEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSN 1464
+E+DSP QLL++NSS FSKLVAEFLRR+S S+
Sbjct: 1398 IEFDSPSQLLKNNSSMFSKLVAEFLRRSSSSH 1429
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528244|ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1951 bits (5054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1466 (66%), Positives = 1163/1466 (79%), Gaps = 34/1466 (2%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKR--RRDDGYILMA--RRAAGLVIVLCNVL----IF 64
D +L +VNVAF + L ++ L++ R + +++ +R +V + VL I
Sbjct: 5 DALLGTVNVAFLYAILIWLLVDSLRQSTRNNHARVVLHYFKRGGPMVFAVFTVLSCAVIS 64
Query: 65 ILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHK-RWPLVLVLWWV 123
++ + FY+Y + RI+ F SVSLV+TW LAT+V+ S + + R+PLVL+LWW
Sbjct: 65 VMNIALAFYQYSSRRIIGFNSVSLVLTWVLATIVSFYSMRTKVRENKRFRFPLVLILWWF 124
Query: 124 VHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD 183
+I + +S L+ SI L L + VD VSLPLLVLLCFN CAR+ SD
Sbjct: 125 FACIIDALLLSSKLVKKFESINLWFFLSKDNVVDSVSLPLLVLLCFNV-----CARENSD 179
Query: 184 LD---IPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
L+ + L +EE+ ++ F +A + SK+ F WLN +F+ GRIQKLEL HIPP+P
Sbjct: 180 LEQEQMLLQKEEESSMEEEDEQAFTNASMWSKLAFRWLNPIFKTGRIQKLELGHIPPVPP 239
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SETA +ASS+LEESLRKQK SL + I +++WKSLALNA AGVNT ASYIGP LITN
Sbjct: 240 SETAENASSVLEESLRKQKLKGGSLTKAIAYSIWKSLALNAVLAGVNTGASYIGPLLITN 299
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FL G + SS YGLVLA +F AKT ESL+QRQWYFGA RIGIRVR+ALT LIY +
Sbjct: 300 FVNFLLGDNGDSSIQYGLVLAFIFFLAKTAESLSQRQWYFGAQRIGIRVRAALTSLIYSK 359
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S+ +K AGP+ G IIN+INVDVERIGDF YIH +WLLPVQV LALVILY NLG P+FA
Sbjct: 360 SLLMKCAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGGTPSFA 419
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
A TI VMV NTPLAN+QE HS IMEAKD+RIK TSET+K++R+LKL SWE FL+KL
Sbjct: 420 AFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFLQKL 479
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
L+LRE ER L+KYLYTCSA+A LFW SPTLVSV+TFG CIL+KT LT+ VLSALATFR
Sbjct: 480 LQLRETERRWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALATFR 539
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
ILQEPIYNLPELISMI QTKVS+ RIQEFIKED+Q + I +SK S VAI+I+ GEY W
Sbjct: 540 ILQEPIYNLPELISMIIQTKVSVDRIQEFIKEDDQNQFINRHSSKISAVAIEIKPGEYVW 599
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+ ++ K PTI++T K+ I KG KVA+CGSVGSGKSSL+ +LGEIP +SGA KV+G
Sbjct: 600 ETNDQTHKNPTIQITGKLVIKKGQKVAICGSVGSGKSSLICCLLGEIPLVSGAVTKVYGT 659
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
++YVPQS WIQ+GT+RENILFGK M++ FYE+VL+GCAL+QDI MW DGDL+ V ERGIN
Sbjct: 660 RSYVPQSPWIQSGTVRENILFGKQMKKDFYEDVLDGCALHQDINMWGDGDLNPVEERGIN 719
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARAVY++SD+Y DDPFSAVDAHTGTHLFK+CLM LL KTV+Y THQL
Sbjct: 720 LSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYATHQL 779
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFL+AADL+LVMKDGKI +SG Y+DLIA NSELV+QM A++++L Q+NP QED S
Sbjct: 780 EFLEAADLILVMKDGKIVESGSYKDLIACPNSELVQQMAAYQETLHQINPCQEDDSASCR 839
Query: 841 PCQMSQI--TEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
PCQ +QI EE + E GRS++E+ E GRVKW+VYS F+ YKG LVPVILL
Sbjct: 840 PCQKNQIEVAEENIQEIM---EDWGRSKEEEAETGRVKWSVYSTFVISAYKGVLVPVILL 896
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQ+LFQ +QMGSNYWI+WAT++K +V+ +QL+G F LS G + FILGR VL+A +A++T
Sbjct: 897 CQILFQVMQMGSNYWISWATEQKGRVNNKQLMGTFALLSFGGTIFILGRTVLMAAVAVET 956
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
AQRLFL MITSVFRAP+SFFD+TPSSRI++R STDQSTVDTDIPYRLAGL FALIQLLSI
Sbjct: 957 AQRLFLGMITSVFRAPVSFFDTTPSSRIMSRSSTDQSTVDTDIPYRLAGLVFALIQLLSI 1016
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPIL 1078
I+LMSQ AWQV LF V+ ISIWY QAYYITTARELARMVG RKAPIL
Sbjct: 1017 IVLMSQVAWQVILLFFVVFAISIWY------------QAYYITTARELARMVGIRKAPIL 1064
Query: 1079 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1138
HHFSESIAGA TIRCFNQE F+ + +LIDDYS V FHN GTMEWL +RIN LFN F+
Sbjct: 1065 HHFSESIAGAATIRCFNQEKLFMTKIKALIDDYSRVAFHNFGTMEWLSVRINFLFNLVFY 1124
Query: 1139 LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1198
VL+ILVTLPRS IDPSLAGL ATYGLNLNVLQAWVIWNLCNVENKMISVERILQF++IP
Sbjct: 1125 FVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIP 1184
Query: 1199 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1258
SEAPL+I++ RP PEWP GK+EL NL ++Y+P PMVLKG+TC FP +KKIGVVGRTGS
Sbjct: 1185 SEAPLIIQDCRPEPEWPKEGKVELRNLHIRYDPAAPMVLKGVTCVFPAQKKIGVVGRTGS 1244
Query: 1259 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL 1318
GKSTL+QALFRVVEP G ILIDGVDIS IGLQDLRS+L IIPQDP LF GTVRTNLDPL
Sbjct: 1245 GKSTLVQALFRVVEPLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPL 1304
Query: 1319 EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
EQH+DQE+WEV++KCHLAEIVR+D RLLDAPVAE+GENWSVGQRQLVCLAR+LLKK+RIL
Sbjct: 1305 EQHADQELWEVLSKCHLAEIVRRDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRIL 1364
Query: 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438
VLDEATASIDTATDN+IQ+TIREET+ CTVITVAHRIPTVIDND VLVLDEG ++EYD P
Sbjct: 1365 VLDEATASIDTATDNLIQKTIREETNGCTVITVAHRIPTVIDNDRVLVLDEGTIVEYDEP 1424
Query: 1439 RQLLEDNSSSFSKLVAEFLRRTSKSN 1464
QLL++NSSSFSKLV+EFLRR+S+S+
Sbjct: 1425 AQLLQNNSSSFSKLVSEFLRRSSQSS 1450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510881|ref|XP_003524162.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1937 bits (5018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1469 (66%), Positives = 1162/1469 (79%), Gaps = 34/1469 (2%)
Query: 9 LVSADKVLESVNVAFFIGLFTRLWIEILKRRR-DDGYILMARRAAGLVIVLCNVL----I 63
+V D +L +VNVAF + L ++ L++ ++ + +V + VL I
Sbjct: 1 MVVLDALLGTVNVAFLYAILIWLLVDSLRQSTLSHVRVVDCFKRGPMVFAVSTVLSCAVI 60
Query: 64 FILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW--PLVLVLW 121
++ M FY+Y + +I+ F SVSL +TW LAT+V+ S + + E+KR+ PLVL+LW
Sbjct: 61 SVMNMALAFYQYSSRKIIGFNSVSLALTWVLATIVSFYSMRTK-VRENKRFGFPLVLILW 119
Query: 122 WVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDP 181
WV I + +S+ L+ SI L L E VD VSLPLLVLLCFN CAR+
Sbjct: 120 WVFACSIDAILLSLKLVKGFESIDLWFFLSEDNVVDSVSLPLLVLLCFNV-----CAREN 174
Query: 182 SDLD----IPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPP 237
SD++ + L +EE+ ++ F +A + SK+ F WLN +F+ GRI+KLEL HIPP
Sbjct: 175 SDVEQEQQLLLEKEEESSMEEEDEEAFTNASMWSKLAFRWLNPIFKAGRIKKLELGHIPP 234
Query: 238 IPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFL 297
+P SETA +ASS+LEESLRKQK + SL + I +++WKSLALNA AGVNT ASYIGP L
Sbjct: 235 VPPSETAENASSVLEESLRKQKLEGGSLTKAIAYSLWKSLALNAVLAGVNTGASYIGPLL 294
Query: 298 ITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357
ITNFV+FL G SS YGL+LA +F AKTVESL+QRQWYFGA RIGIRVR+AL LI
Sbjct: 295 ITNFVNFLLGDDGDSSIQYGLLLAFIFFLAKTVESLSQRQWYFGAQRIGIRVRAALISLI 354
Query: 358 YKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAP 417
Y +S+ +K AGP+ G IIN+INVDVERIGDF YIH +WLLPVQ+ LALVILY NLG P
Sbjct: 355 YGKSLLMKCAGPTQGRIINLINVDVERIGDFCWYIHGVWLLPVQIILALVILYINLGGTP 414
Query: 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFL 477
+FAA TI VMV NTPLAN+QE HS IMEAKD+RIK TSET+K++R+LKL SWE FL
Sbjct: 415 SFAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFL 474
Query: 478 KKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALA 537
+KLL+LREIER L+KYLYTCSA+A LFW SPTLVSV+TFG CIL+KT LT+ VLSALA
Sbjct: 475 QKLLQLREIERGWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALA 534
Query: 538 TFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE 597
TFRILQEPIYNLPELISMI QTKVS+ RI EFIKED+Q + I + TSK S+VAI+I+ GE
Sbjct: 535 TFRILQEPIYNLPELISMIIQTKVSVDRIHEFIKEDDQNQFINKLTSKISEVAIEIKPGE 594
Query: 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657
YAW+ ++ KP I++T K+ I KG KVAVCGSVGSGKSSLL +LGEIP +SGA KV
Sbjct: 595 YAWETNDQTHTKPAIQITGKLVIKKGQKVAVCGSVGSGKSSLLCCLLGEIPLVSGAVTKV 654
Query: 658 HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+G ++YVPQS WIQ+GT+RENILFGK M++ FYE+VL+GCAL+QDI MW DGDL++V ER
Sbjct: 655 YGTRSYVPQSPWIQSGTVRENILFGKQMKKEFYEDVLDGCALHQDINMWGDGDLNLVEER 714
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
GINLSGGQKQRIQLARAVY++SD+Y DDPFSAVDAHTGTHLFK+CLM LL KTV+Y T
Sbjct: 715 GINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYAT 774
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCL 837
HQLEFL+AADL+LVMKDGKI +SG Y++LIA NSELV+QM AH +++ ++NP QED +
Sbjct: 775 HQLEFLEAADLILVMKDGKIVESGSYKELIACPNSELVQQMAAHEETVHEINPCQEDDSV 834
Query: 838 SRVPCQMSQ--ITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPV 895
S PCQ +Q + EE + E GRS++E+ E GRVKW+VYS F+T YKGALVPV
Sbjct: 835 SCRPCQKNQMEVAEENIQEIM---EDWGRSKEEEAETGRVKWSVYSTFVTSAYKGALVPV 891
Query: 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIA 955
ILLCQ+LFQ +QMGSNYWI+WAT++K +V+ +QL+ F+ LS + FILGR VL+A +A
Sbjct: 892 ILLCQILFQVMQMGSNYWISWATEQKGRVNNKQLMRTFVLLSLTGTIFILGRTVLMAAVA 951
Query: 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQL 1015
++TAQRLFL MITSVFRAP+SFF +TPSSRI++R STDQS VDTDIPYRLAGL FALIQL
Sbjct: 952 VETAQRLFLGMITSVFRAPVSFFVTTPSSRIMSRSSTDQSIVDTDIPYRLAGLVFALIQL 1011
Query: 1016 LSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKA 1075
LSII+LMSQ AWQV LF +L ISIWY QAYYITTARELARMVG RKA
Sbjct: 1012 LSIIVLMSQVAWQVILLFFAVLPISIWY------------QAYYITTARELARMVGIRKA 1059
Query: 1076 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1135
PILHHFSESIAGA TIRCFNQE F + +LIDDYS V FHN GTMEWL +RIN LFN
Sbjct: 1060 PILHHFSESIAGAATIRCFNQEKLFFTKVKALIDDYSRVAFHNFGTMEWLSVRINFLFNL 1119
Query: 1136 AFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1195
F+ VL+ILVTLPRS IDPSLAGL ATYGLNLNVLQAWVIWNLCNVENKMISVERILQF+
Sbjct: 1120 VFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFS 1179
Query: 1196 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1255
+IPSEAPL+I++ RP PEWP GK+EL NL ++Y+P PMVLK +TC FP +KKIGVVGR
Sbjct: 1180 SIPSEAPLIIQDCRPEPEWPKEGKVELRNLHIRYDPAAPMVLKCVTCVFPAQKKIGVVGR 1239
Query: 1256 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1315
TGSGKSTL+QALFRVVEP G ILIDGVDIS IGLQDLRS+L IIPQDP LF GTVRTNL
Sbjct: 1240 TGSGKSTLVQALFRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNL 1299
Query: 1316 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
DPLEQH DQE+WEV++KCHLAEIVR+DQRLLDAPVAE+GENWSVGQRQLVCLAR+LLKK+
Sbjct: 1300 DPLEQHEDQELWEVLSKCHLAEIVRRDQRLLDAPVAENGENWSVGQRQLVCLARLLLKKR 1359
Query: 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1435
RILVLDEATASIDTATDN+IQ+TIREETS CTVITVAHRIPTVIDND VLVLDEG ++EY
Sbjct: 1360 RILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDRVLVLDEGTIVEY 1419
Query: 1436 DSPRQLLEDNSSSFSKLVAEFLRRTSKSN 1464
D P QLL++NSSSFSKLV EF RR+S+SN
Sbjct: 1420 DEPAQLLQNNSSSFSKLVTEFFRRSSQSN 1448
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738346|emb|CBI27547.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1458 (65%), Positives = 1109/1458 (76%), Gaps = 120/1458 (8%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGY-------ILMARRAAGLVIVLCNVLIFI 65
D L +NVAFF L T + + +L++RRD G + +V VL N +I +
Sbjct: 2 DSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICV 61
Query: 66 LYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH 125
++GF YE+W+ ++ + +TW LA ++ + T E+KRWPL+L WWV
Sbjct: 62 SHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFS 121
Query: 126 LVIVLVCVSVYLLTHLSSIGLPHI----LPEAKAVDFVSL-PLLVLLCFNATYACCCARD 180
++ + VSVYL+T L + LP +P+A DF SL PL +LLCFN C +
Sbjct: 122 SILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNV-LPFNCGKK 180
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
SDL+ PLL E L + ++SAG+ SK+TF WLN LF++GR+QK++L HIPP+PQ
Sbjct: 181 RSDLEHPLLESEGGN-LSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQ 239
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SE A ASSLLEE+L KQKT T + + +VW+SLA+NA FAG NTIASY+GPFLIT+
Sbjct: 240 SEKAETASSLLEETLTKQKTSVT---KALFCSVWRSLAINAVFAGANTIASYMGPFLITH 296
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FLSGK D SSY+YGLVLA +F AKT+ESL+QRQWY G RIGIRVR+AL VL+YK+
Sbjct: 297 FVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKK 356
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S++IK+AG +SG IIN+INVDV+RIGDF L IH +WLLPVQV LALVILY+NLGAAP+
Sbjct: 357 SLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMT 416
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
ALF+T+ VMV NTPLA RQER HS IMEAKD+RIKATSETLKSMRVLKL SWE FL K+
Sbjct: 417 ALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKI 476
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
LRE ER LK+YLYTCSA+AFLFW SPTLVSVITF VCI LAT+
Sbjct: 477 KELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCI-------------KLATY- 522
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
PTS++S+V+IDIE GEYAW
Sbjct: 523 -----------------------------------------PTSESSEVSIDIEVGEYAW 541
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+EN K PTIK+ +M IMKG KVAVCGSVGSGKSSLL SILGEIPRISG KV+G
Sbjct: 542 TC-DENLK-PTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGS 599
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
KAYVPQS+WIQTGTIR+N+LFGK++ ++FYE+VLE CAL++DI++W +GDLSVVGERG+N
Sbjct: 600 KAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMN 659
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARA+YS KQ LM L TV+Y THQL
Sbjct: 660 LSGGQKQRIQLARAIYS-----------------------KQHLM-LFFFTTVIYVTHQL 695
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFLDA+DLV MKDG I QSGKYEDLIAD NSELVRQM AH KSLDQVNP QE+ C +
Sbjct: 696 EFLDASDLV--MKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQEN-CFTNK 752
Query: 841 PCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
P Q +I EE PIS G+ E+TE GRVKW VYS FIT YKG LVPVILL
Sbjct: 753 PPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILL 812
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQVLFQ LQMGSNYWIAWAT+E+ +VSREQLIGVF LSGGSS FILGRAVLL+TIAI+T
Sbjct: 813 CQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIET 872
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
A+ LF MI +VFRAP+SFFDSTPSS+ILNR STDQSTVDTDIPYRLAGLAFALIQLLSI
Sbjct: 873 ARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSI 932
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPIL 1078
I+LMSQ AWQVF LF+ IL ISIWYQ AR +LARMVG RKAPIL
Sbjct: 933 IVLMSQVAWQVFLLFVSILAISIWYQ----ART-------------KLARMVGVRKAPIL 975
Query: 1079 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1138
HHFSES+AGA TIRCF+Q++RFL R+ SLIDDYS V FHN TMEWLC+RIN LFN FF
Sbjct: 976 HHFSESVAGAATIRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFF 1035
Query: 1139 LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1198
LVL+ILV+LPRSAI PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT IP
Sbjct: 1036 LVLVILVSLPRSAISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIP 1095
Query: 1199 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1258
SEAPLVI+N RPS EWPS+G+I+L+NL V+Y PTLPMVLKGITCTFPGE+KIGVVGRTGS
Sbjct: 1096 SEAPLVIENCRPSLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGS 1155
Query: 1259 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL 1318
GKSTLIQALFRVVEPS G+ILIDGVDIS +GL+DLRSRLSIIPQDP LFQGT+RTNLDPL
Sbjct: 1156 GKSTLIQALFRVVEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPL 1215
Query: 1319 EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
+HSDQEIWEV+NKC LAEI+ QD+ LL+A VAEDGENWSVGQRQLVCLARVLL++++IL
Sbjct: 1216 GEHSDQEIWEVLNKCRLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRRKIL 1275
Query: 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438
VLDEATAS+DTATDN+IQ+TIREETS+CTVITVAHRIPTVIDNDLVLVLDEGKV+EYDSP
Sbjct: 1276 VLDEATASVDTATDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVEYDSP 1335
Query: 1439 RQLLEDNSSSFSKLVAEF 1456
QLL+D+SS+FSKLV EF
Sbjct: 1336 PQLLKDSSSAFSKLVMEF 1353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357131484|ref|XP_003567367.1| PREDICTED: ABC transporter C family member 3-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1749 bits (4530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1473 (58%), Positives = 1089/1473 (73%), Gaps = 50/1473 (3%)
Query: 14 KVLESVNVAFFIGLFTRLWIEILKRRR--------DDGYILMA-RRAAGL----VIVLCN 60
+ L+ + A F L + E KRR+ G ++ A RR A L ++ CN
Sbjct: 55 QALDYIRAAAFAILLVWILAEFAKRRKRRQEAAGHGHGAVVSAQRRGAALLQAHIVAFCN 114
Query: 61 VLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVL 120
+ +L++GF W ++VS V +W LAT+ L ++ G WP+VLV
Sbjct: 115 ASMTLLHIGFSVLGVWKQQVVSPGLVFESASWLLATLFLLYCKH-EGAGVVSNWPVVLVS 173
Query: 121 WWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARD 180
WW + L+ S++L H+ A ++F SLP ++C +
Sbjct: 174 WWFFSFLSELLITSLHLF---------HLFNSATVINFTSLPFCTIICLVVAAMRLSKAN 224
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
+L+ PLL ED + + S F+++G S++TF WLN + ++G +LEL HIP +PQ
Sbjct: 225 RKELNQPLLEGEDTDDSSR--SRFSNSGWWSRLTFRWLNPVLEKGHKVRLELEHIPSVPQ 282
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SETA + + L+E+L QK + L + II AVW L NA FAG NT++SY+GPFLIT
Sbjct: 283 SETAEQSYAFLQETLHTQKPEPMQLRKTIICAVWTPLVRNAVFAGFNTVSSYMGPFLITY 342
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
V LS K+ + G +LA + +KTVES+TQRQWYFGA RIG +VR+AL V IYK+
Sbjct: 343 LVELLSDKNTDKGHGRGYMLAFLLFASKTVESITQRQWYFGARRIGFQVRAALMVSIYKK 402
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S+++K + +G ++N ++VDVE++ DFF YIH IWLLP Q+FLAL ILY +LGA + +
Sbjct: 403 SLSLKNSSTVAGKVVNFLDVDVEKVSDFFWYIHGIWLLPFQIFLALAILYSSLGAMASLS 462
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
A+ T+ VMVSNTPL Q + IM+A+D+RIKA +E +KSMR+LKL +WE +L KL
Sbjct: 463 AVLITVLVMVSNTPLTKSQHNLNMKIMDARDSRIKAMAEAMKSMRILKLHAWETAYLDKL 522
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
L+LR++ER L++YLYTCSAI FLFWASPTLVSVITFGVCIL+ PL++G VLSALATFR
Sbjct: 523 LKLRDVERGWLRRYLYTCSAICFLFWASPTLVSVITFGVCILVDIPLSAGTVLSALATFR 582
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-----ITEPTSKASDVAIDIEA 595
+LQ+PIYNLPEL+S+I QTKVSL RI+EFIKED Q KP ITE A ++IE
Sbjct: 583 VLQDPIYNLPELVSVITQTKVSLDRIEEFIKEDQQGKPSCYGNITEKKDLAMAGEMEIEP 642
Query: 596 GEYAWDAREENFK-KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A + K K T+K+ K+ I KG KVAVCG VGSGKSSLL SI+GEIPRISGA
Sbjct: 643 GEYSWEADNSSKKTKITLKIERKVSIRKGLKVAVCGPVGSGKSSLLYSIMGEIPRISGAE 702
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
V G +AYVPQS+WIQTGTI++N+LFGK M + YEEVL+GCAL++D+E+WA+GD++VV
Sbjct: 703 TMVAGSRAYVPQSAWIQTGTIQDNVLFGKAMDKRLYEEVLQGCALDRDMELWANGDMTVV 762
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARA+YSNSDVY DDPFSAVDAHT HLFK+CL+ L+S KTV+
Sbjct: 763 GERGVNLSGGQKQRIQLARALYSNSDVYFLDDPFSAVDAHTSAHLFKECLLRLMSSKTVM 822
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y THQLEFL +DLVLVMK G+I QSG+Y+DLIAD++ EL++QM AH +SL QVNP +
Sbjct: 823 YVTHQLEFLRDSDLVLVMKGGRIVQSGRYDDLIADKDGELLKQMAAHNQSLSQVNPAKTH 882
Query: 835 KCLS--RVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
R + ++TE A + GR +E+ E GRVKW VY F+T Y GAL
Sbjct: 883 GLTKSKRHKKKQVELTEIESAHHVV-----GRECEEERESGRVKWDVYRKFVTSAYGGAL 937
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
+PV+L C V FQ LQ+ SNYWIAWA + +VS++++IG+F+ LS GSS FILGRAV L+
Sbjct: 938 IPVVLACHVFFQGLQICSNYWIAWAAERPYQVSKQKMIGLFVLLSAGSSAFILGRAVFLS 997
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQ+LFL MIT++FRAP+SFFDSTPSSRILNR STDQ+TVDTDIPYRLAGL FA+
Sbjct: 998 TIAIETAQQLFLAMITNIFRAPMSFFDSTPSSRILNRASTDQATVDTDIPYRLAGLVFAM 1057
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGT 1072
IQLLSII +MSQ AW +F LFL+I+ IS WYQ YYI++ARELARMVG
Sbjct: 1058 IQLLSIIFIMSQIAWPIFVLFLIIIAISAWYQ------------GYYISSARELARMVGI 1105
Query: 1073 RKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1132
RKAP+LHHFSE+++GA TIRCFNQ +FL +S +LIDDY+ VTFHN T+EWL +RIN L
Sbjct: 1106 RKAPVLHHFSETVSGAATIRCFNQGEKFLAKSFALIDDYTRVTFHNSATVEWLSIRINFL 1165
Query: 1133 FNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192
FN FF++L+ILV LPR IDPSLAGLAATYGLNLNVLQAWVIWNLC+VENKMI VERIL
Sbjct: 1166 FNLVFFVMLVILVLLPRDTIDPSLAGLAATYGLNLNVLQAWVIWNLCHVENKMICVERIL 1225
Query: 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGV 1252
Q++NIPSE+PL + N RP+ WP G I++E L +QY +PMVLKGI+CTFPGE+KIGV
Sbjct: 1226 QYSNIPSESPLEVTNCRPTETWPWCGTIQIEALQIQYKLDMPMVLKGISCTFPGERKIGV 1285
Query: 1253 VGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1312
VGRTGSGKSTLIQALFR+VEPS GRILIDGVDIS++GL DLR +LSIIPQ+P LFQGTVR
Sbjct: 1286 VGRTGSGKSTLIQALFRIVEPSAGRILIDGVDISLLGLHDLRCKLSIIPQEPTLFQGTVR 1345
Query: 1313 TNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372
NLDPL+Q+ D EIWEV+ KC L EIVR+D RLLDAPVAEDG NWSVGQRQLVCLARVLL
Sbjct: 1346 ANLDPLQQYLDTEIWEVLRKCRLDEIVREDNRLLDAPVAEDGGNWSVGQRQLVCLARVLL 1405
Query: 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432
KK+ILVLDEATAS+DTATDN+IQ+TIR+ET CTVIT+AHRIPTVID+DLVLVL EG +
Sbjct: 1406 MKKKILVLDEATASVDTATDNIIQKTIRQETDNCTVITIAHRIPTVIDSDLVLVLGEGNI 1465
Query: 1433 LEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNR 1465
LE+DSP LL D SS+FSKLV EF+ R+ ++
Sbjct: 1466 LEFDSPENLLRDESSAFSKLVMEFVGRSEGRHQ 1498
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56784517|dbj|BAD82774.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group] gi|56784875|dbj|BAD82115.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1745 bits (4519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1470 (59%), Positives = 1107/1470 (75%), Gaps = 57/1470 (3%)
Query: 15 VLESVNVAFFIGLFTRLWIEILK-----RRRDDGYILMARRAA-----GLVIVLCNVLIF 64
VL+ V +A F L + E+ + RR G ++ ++R +IVLCN I
Sbjct: 52 VLDYVRIASFAILLVWILAELARLNKRHRREGHGDMVSSQRKGEVLLPAYIIVLCNASIS 111
Query: 65 ILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVV 124
++++ F +W + VS + V+W L T+ L ++ G WP VL+ WW
Sbjct: 112 LMHICFSVLVFWKRQTVSLDLIFKSVSWLLVTLFLLYCKH-EGAGVVSNWPSVLLSWWFF 170
Query: 125 HLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDL 184
+ + S++LL +S A VDF SLPL +C A + D
Sbjct: 171 SFLSESLLTSLHLLHLFNS---------ATVVDFTSLPLCTFICLVAVTMRPSKANQQDQ 221
Query: 185 DIPLL-REEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET 243
+ PLL RE+ D+ + F+++G S +TF WLN +F++G +LEL HIP +PQS+T
Sbjct: 222 NQPLLVREDSDD---SSTDRFSNSGWWSCLTFQWLNPIFEKGHKVRLELDHIPSVPQSDT 278
Query: 244 ANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVS 303
AN + +LL+E+L KQK + + + II AVW L N FAG+NTIASY+GPFLIT V
Sbjct: 279 ANQSYALLQETLHKQKPEPMPMRRAIICAVWTPLIANGVFAGLNTIASYMGPFLITYLVE 338
Query: 304 FLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMA 363
LS K+ + +G +LA +F +KTVESL+QRQWYFGA RIG RVR+AL V IY++S+
Sbjct: 339 LLSDKNPDKGHGHGYMLACLFFASKTVESLSQRQWYFGARRIGFRVRAALMVSIYQKSLL 398
Query: 364 IKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423
+K + +SG I+N ++VDVE++ +FF Y+HRIWLLP+Q+ LAL ILY++LGA + +A+
Sbjct: 399 MKNSSTASGKIVNFLDVDVEKVSEFFWYVHRIWLLPLQISLALAILYRSLGAMASLSAVL 458
Query: 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483
+T+ VMVSNTPLA QE + IMEAKD+RIKA +E +KSMR+LKL +WE + KLL L
Sbjct: 459 ATVLVMVSNTPLAKSQENLNMKIMEAKDSRIKAMAEAMKSMRILKLHAWETAYFDKLLNL 518
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ 543
R++ER L+KYLYTCSAIAFLFWASPTLVSV+TFGVCIL++ PL++G VLSA+ATFRILQ
Sbjct: 519 RDVERGWLRKYLYTCSAIAFLFWASPTLVSVVTFGVCILVEMPLSAGTVLSAVATFRILQ 578
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI-TEPTSKASDV----AIDIEAGEY 598
+PIYNLPEL+SM+ QTKVSL RI+EFIKE++Q KP ++ ++ D+ A++IE G Y
Sbjct: 579 DPIYNLPELVSMVTQTKVSLDRIEEFIKEEHQGKPSRSDNNTRTKDLSMTGAMEIEPGVY 638
Query: 599 AWDAREENFKKPT--IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656
W+ + + KK +K+ K+ I KG KVAVCG VGSGKSSLL SI+GEIPRI+GA
Sbjct: 639 GWEI-DNSLKKTKFMLKIDRKLSISKGQKVAVCGPVGSGKSSLLYSIMGEIPRINGAETT 697
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
V G +AYV QS+WIQTGTI++N+LFGKDM +SFYEEVL GCAL++D+E+WA+GD+++VGE
Sbjct: 698 VFGSRAYVAQSAWIQTGTIQDNVLFGKDMDRSFYEEVLHGCALDRDLELWANGDMTMVGE 757
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776
RG+NLSGGQKQRIQLARA+YS+SDVY+ DDPFSAVDAHTG HLFK+CL+ L+S KTV+Y
Sbjct: 758 RGMNLSGGQKQRIQLARALYSDSDVYLLDDPFSAVDAHTGAHLFKECLLRLMSSKTVIYV 817
Query: 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ---- 832
THQLEFL ADLVLVMKDG+I QSGKY+DL+AD+N EL QM AH +SL QV P +
Sbjct: 818 THQLEFLRDADLVLVMKDGRIVQSGKYDDLVADRNGELSMQMAAHNQSLSQVTPAKAHVL 877
Query: 833 -EDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGA 891
++K R ++++I + GR +E+ E GRVKW +Y F+ Y GA
Sbjct: 878 TKNKSHKRRQTELTEIELDH--------NVIGRECEEERESGRVKWDIYRKFVNSAYGGA 929
Query: 892 LVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951
LVPVIL CQVLFQ LQ+ SNYWIAWA + + +VSRE++IG+F+ LS GSS FILGRA++L
Sbjct: 930 LVPVILACQVLFQGLQICSNYWIAWAAERQEQVSREKMIGIFVLLSAGSSVFILGRAIVL 989
Query: 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011
+TIAI+TA + FL M S+FRAPI+FFDSTPSSRILNR STDQSTVDTDIPYRLAGL FA
Sbjct: 990 STIAIETAHQFFLGMTRSIFRAPINFFDSTPSSRILNRASTDQSTVDTDIPYRLAGLIFA 1049
Query: 1012 LIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVG 1071
LIQLLSII +MSQ AW +F LF++I+ IS WYQ +YYI +ARELARMVG
Sbjct: 1050 LIQLLSIIFIMSQIAWPIFILFIIIIAISTWYQ------------SYYICSARELARMVG 1097
Query: 1072 TRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1131
RKAP+LHHFSE+++GA TIRCFNQ +F +S +LIDDYS +TFHN T+EWLC+RIN
Sbjct: 1098 IRKAPVLHHFSETVSGAATIRCFNQGEKFFRKSLALIDDYSRITFHNSATIEWLCVRINF 1157
Query: 1132 LFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1191
LFN FF+ L+ILV++PR+ IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI
Sbjct: 1158 LFNLVFFVTLVILVSMPRNTIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1217
Query: 1192 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIG 1251
LQF+NI SEAPLVI++ RP WP G I++++L V+YNP +PMVLKGI+CT PGE+KIG
Sbjct: 1218 LQFSNITSEAPLVIEDCRPRESWPWCGTIQIDSLQVRYNPDMPMVLKGISCTIPGERKIG 1277
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1311
VVGRTGSGKSTLI ALFR+VEPS GRILID VDIS++G+ DLRSRLS+IPQ+P LFQGTV
Sbjct: 1278 VVGRTGSGKSTLIHALFRIVEPSEGRILIDDVDISLLGVHDLRSRLSVIPQEPTLFQGTV 1337
Query: 1312 RTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371
RTNLDPL+QH D EIWEV++KC L EIVR+D RLLDAPV EDG NWSVGQRQLVCLARVL
Sbjct: 1338 RTNLDPLQQHLDTEIWEVLHKCRLEEIVREDSRLLDAPVVEDGGNWSVGQRQLVCLARVL 1397
Query: 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1431
L KK+ILVLDEATAS+DTATDN+IQ+TIR+ET+ CTVIT+AHRIPTVID+DLVLVL EGK
Sbjct: 1398 LMKKKILVLDEATASVDTATDNIIQKTIRQETNNCTVITIAHRIPTVIDSDLVLVLGEGK 1457
Query: 1432 VLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1461
+LE+DSP LL D SS+FSKLV EF+ R+S
Sbjct: 1458 ILEFDSPENLLRDESSAFSKLVMEFVGRSS 1487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1470 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.842 | 0.817 | 0.483 | 4.1e-310 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.396 | 0.385 | 0.497 | 2.4e-298 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.879 | 0.881 | 0.446 | 1.3e-297 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.853 | 0.839 | 0.447 | 4.2e-292 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.426 | 0.407 | 0.417 | 2.6e-241 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.841 | 0.815 | 0.386 | 4e-232 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.336 | 0.310 | 0.406 | 1e-184 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.397 | 0.372 | 0.348 | 1.2e-171 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.388 | 0.370 | 0.363 | 1.4e-171 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.829 | 0.815 | 0.311 | 2.6e-171 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2975 (1052.3 bits), Expect = 4.1e-310, P = 4.1e-310
Identities = 623/1289 (48%), Positives = 836/1289 (64%)
Query: 204 FASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET----ANDASSLLEESLRKQK 259
++ AG+LS +TF W++ L G + L+L +P + +++ A S+LE ++
Sbjct: 246 YSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGER 305
Query: 260 TDATS---LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316
+ T+ + + A W+ L + A FA + T+ASY+GP LI FV +L+G+ ++ H
Sbjct: 306 SGVTTFKLIKALYFTAQWEIL-VTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN--HE 362
Query: 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGI 373
G VL F AK VE L+QR W+F ++GIR+RSAL +IY++ + + G +SG
Sbjct: 363 GYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGE 422
Query: 374 IINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433
IIN + VD ERIG+F Y+H W++ +QV LAL ILY+NLG A + AAL +TI VM+ N
Sbjct: 423 IINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLA-SIAALVATIIVMLINF 481
Query: 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKK 493
P QERF +MEAKD+R+K+TSE L++MR+LKL WE +F + E LKK
Sbjct: 482 PFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKK 541
Query: 494 YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELI 553
Y+Y + I+F+FW +PTLVSV TFG CILL PL SG +LSALATFRILQEPIYNLP+ I
Sbjct: 542 YVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTI 601
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDAREENFKKPTI 612
SMI QTKVSL R+ ++ DN + I E K +SDVA+++ +WD N PT+
Sbjct: 602 SMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSN---PTL 658
Query: 613 KLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQT 672
K + K+ E+P++SG+ +KV G KAYV QS WIQ+
Sbjct: 659 KDIN-FKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGS-LKVCGTKAYVAQSPWIQS 716
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
G I +NILFGK M + Y++VLE C+L++D+E+ + GD +V+GERGINLSGGQKQRIQ+A
Sbjct: 717 GKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 776
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792
RA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL K+V+Y THQ+EFL AADL+LVM
Sbjct: 777 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVM 836
Query: 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL---DQV--NPPQEDKCLSR--VPCQMS 845
KDG+I Q+GKY D++ + ++ + + AH+++L D V N E L + V + +
Sbjct: 837 KDGRISQAGKYNDIL-NSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDA 895
Query: 846 QITEERF-ARPISCGEFSG----RS--QDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
+E+ ++ + + R Q+E+ E G V VY +ITL Y GALVP ILL
Sbjct: 896 IAVDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILL 955
Query: 899 CQVLFQALQMGSNYWIAWAT----DEKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATI 954
QVLFQ LQ+GSNYW+AWAT D + V L RA LL T
Sbjct: 956 GQVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTA 1015
Query: 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXX 1014
KTA LF M +FR+P+SFFDSTPS RI++R STDQS VD ++PY+
Sbjct: 1016 GYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQ 1075
Query: 1015 XXXXXXXXXXXXWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRK 1074
W VF +F+ ++ SIWYQ YYI AREL+R+VG K
Sbjct: 1076 LIGIIGVMSQVSWLVFLVFIPVVAASIWYQ------------RYYIAAARELSRLVGVCK 1123
Query: 1075 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXX 1134
AP++ HFSE+I+GATTIR F+QE RF + L D YS F+ G MEWLC
Sbjct: 1124 APLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSS 1183
Query: 1135 XXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF 1194
P IDPSLAGLA TYGL+LN LQAW+IW LCN+ENK+ISVERILQ+
Sbjct: 1184 LTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQY 1243
Query: 1195 TNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVG 1254
++PSE PLVI+++RP WPS G++E+ +L V+Y P +P+VL+GITCTF G + G+VG
Sbjct: 1244 ASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVG 1303
Query: 1255 RTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1314
RTGSGKSTLIQ LFR+VEPS G I IDGV+I IGL DLR RLSIIPQDP +F+GT+R+N
Sbjct: 1304 RTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSN 1363
Query: 1315 LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXX 1374
LDPLE+++D +IWE ++KC L + VR+ ++ LD+ V+E+G+NWS+GQRQLVC
Sbjct: 1364 LDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKR 1423
Query: 1375 XXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
DEATAS+DTATDN+IQ+T+RE S CTVIT+AHRI +VID+D+VL+L G + E
Sbjct: 1424 SKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEE 1483
Query: 1435 YDSPRQLLEDNSSSFSKLVAEFLRRTSKS 1463
YD+P +LLED SSSFSKLVAE+ R+S S
Sbjct: 1484 YDTPVRLLEDKSSSFSKLVAEYTSRSSSS 1512
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1474 (523.9 bits), Expect = 2.4e-298, Sum P(2) = 2.4e-298
Identities = 299/601 (49%), Positives = 391/601 (65%)
Query: 866 QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWA---TD-EK 921
Q+E+ G+V VY +++ YKGAL+P+I+L Q FQ LQ+ SN+W+AWA T+ ++
Sbjct: 922 QEEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDE 981
Query: 922 RKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDST 981
KV L RA L+AT + AQ+LFLNM+ SVFRAP+SFFDST
Sbjct: 982 SKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDST 1041
Query: 982 PSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGISI 1041
P+ RILNR S DQS VD DIP+RL G WQVF L+++ +++
Sbjct: 1042 PAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVF---LLVVPVAV 1098
Query: 1042 WYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1101
C ++ Q YY+ ++REL R+V +K+PI+H F ESIAGA TIR F QE RF+
Sbjct: 1099 --------ACFWM-QKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFI 1149
Query: 1102 LRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAA 1161
R+ L+D + F + +EWLC P IDPS+AGLA
Sbjct: 1150 KRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAV 1209
Query: 1162 TYGLNLNV-LQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1220
TYGLNLN L W++ + C +ENK+IS+ERI Q++ I EAP +I++ RP WP++G I
Sbjct: 1210 TYGLNLNGRLSRWIL-SFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTI 1268
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
EL ++ V+Y LP VL G++C FPG KKIG+VGRTGSGKSTLIQALFR++EP+ G+I I
Sbjct: 1269 ELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITI 1328
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1340
D +DIS IGL DLRSRL IIPQDP LF+GT+R NLDPLE+HSD +IWE ++K L ++VR
Sbjct: 1329 DNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVR 1388
Query: 1341 QDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIR 1400
LD+PV E+G+NWSVGQRQLV DEATAS+DTATDN+IQ+ IR
Sbjct: 1389 GKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIR 1448
Query: 1401 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
E CTV T+AHRIPTVID+DLVLVL +G+V E+D+P +LLED SS F KLV E+ R+
Sbjct: 1449 TEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRS 1508
Query: 1461 S 1461
+
Sbjct: 1509 T 1509
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2857 (1010.8 bits), Expect = 1.3e-297, P = 1.3e-297
Identities = 597/1337 (44%), Positives = 835/1337 (62%)
Query: 152 EAKAVDFVSLPLLVLLCFNATYACCCARDPSD---LDI---PLLREEDDEFLCKNISTFA 205
E +V FV + LV +C C C + +D+ PLL + + + F+
Sbjct: 152 EMVSVHFV-ISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFS 210
Query: 206 SAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLR----KQKTD 261
AG+LS+++F W++ L G + +++ +P + +S+T + L +++
Sbjct: 211 KAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRIT 270
Query: 262 ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLA 321
L + + +VW+ + L+A A V T++ Y+ P+L+ NFV +L+G + + Y VL
Sbjct: 271 TFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGY--VLV 328
Query: 322 SVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMI 378
+ F AK VE TQRQW+F + G+ +RS L +IY++ + + G +SG IIN++
Sbjct: 329 TTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLM 388
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANR 438
VD +RI F ++H W+L +QV LAL ILYK+LG + AA +TI VM++N P A
Sbjct: 389 AVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLG-SIAAFPATILVMLANYPFAKL 447
Query: 439 QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKYLYTC 498
+E+F S +M++KD R+K TSE L +M++LKL WE +F IE LKK++Y
Sbjct: 448 EEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNS 507
Query: 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQ 558
SAI + WA+P+ +S FG C+LLK PL SG +L+ALATFRILQ PIY LPE ISMI Q
Sbjct: 508 SAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQ 567
Query: 559 TKVSLYRIQEFI-KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDK 617
TKVSL RI F+ +D Q+ + S +S++A++I G ++WD ++ PT++ +
Sbjct: 568 TKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWD---DSSPIPTLRDMN- 623
Query: 618 MKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
K+ E+P+ISG +KV G+KAY+ QS WIQ+G + E
Sbjct: 624 FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKVEE 682
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NILFGK M + +Y+ VLE C+LN+D+E+ D +V+GERGINLSGGQKQRIQ+ARA+Y
Sbjct: 683 NILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQ 742
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQ+EFL ADL+LVMKDGKI
Sbjct: 743 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKI 802
Query: 798 EQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQM-SQITEERFARPI 856
Q+GKY +++ D ++ + + AH ++L ++ + + +++ + +
Sbjct: 803 TQAGKYHEIL-DSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENEVLHHKEKQEN 861
Query: 857 -SCGEFSGRS-QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI 914
S + SG+ Q+E+ E G+V +TVY ++ L Y GA++P+IL+ QVLFQ L +GSNYW+
Sbjct: 862 GSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWM 921
Query: 915 AWAT----DEKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSV 970
W T D + VS L RA+L+A K A LF M +
Sbjct: 922 TWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRI 981
Query: 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVF 1030
FRA +SFFD+TP RILNR STDQS D +P + A WQV
Sbjct: 982 FRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVL 1041
Query: 1031 PLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1090
+F+ ++ WY+ YYI+ ARELAR+ G ++P++HHFSE+++G TT
Sbjct: 1042 IVFIPVVAACAWYR------------QYYISAARELARLAGISRSPVVHHFSETLSGITT 1089
Query: 1091 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRS 1150
IR F+QE RF L D YS + FH+ G MEWLC P
Sbjct: 1090 IRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEG 1149
Query: 1151 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1210
I+PSLAGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+TNIPSE PLVI+ +RP
Sbjct: 1150 VINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRP 1209
Query: 1211 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270
WPS G+I + NL V+Y P LPMVL G+TCTFPG K G+VGRTG GKSTLIQ LFR+
Sbjct: 1210 EKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRI 1269
Query: 1271 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI 1330
VEP+ G I IDG++I IGL DLRSRLSIIPQDP +F+GT+R+NLDPLE+++D +IWE +
Sbjct: 1270 VEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEAL 1329
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTA 1390
+ C L + VR+ + LD+PV+E+G+NWSVGQRQLVC DEATASIDTA
Sbjct: 1330 DNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTA 1389
Query: 1391 TDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450
TDN+IQ+T+R + CTVIT+AHRI +VID+D+VL+LD+G + E+DSP +LLED SS FS
Sbjct: 1390 TDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFS 1449
Query: 1451 KLVAEFLRRT-SKSNRN 1466
KLVAE+ + SKS R+
Sbjct: 1450 KLVAEYTTSSESKSKRS 1466
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2805 (992.5 bits), Expect = 4.2e-292, P = 4.2e-292
Identities = 578/1293 (44%), Positives = 812/1293 (62%)
Query: 178 ARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPP 237
A + + L + EDDE ++ F++AG LS ++F W++ L G + ++ +P
Sbjct: 210 AESSAATSVQLDKAEDDEV----VTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQ 265
Query: 238 IPQSETANDASSLLEESLR----KQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYI 293
+ S+ A + L +++ L + + +VW+ + L+ FA V T++ Y+
Sbjct: 266 VDNSDRAEKLFWIFRSKLEWDDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYV 325
Query: 294 GPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSAL 353
P+L+ FV +L+G+ +S+ G+VL + F AK VE +R WYF + GI +RS L
Sbjct: 326 APYLMDTFVQYLNGQRQYSNQ--GVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVL 383
Query: 354 TVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILY 410
+IY++ + + G +SG IIN++ VD ERI F Y+H W+L +Q+ LAL+ILY
Sbjct: 384 VSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILY 443
Query: 411 KNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLL 470
++LG + AA +T VM+ N PLA +E+F +ME+KD R+K TSE L +MR+LKL
Sbjct: 444 RSLGLG-SIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQ 502
Query: 471 SWEQEFXXXXXXXXEIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSG 530
WE +F IE LKK++Y +AI+ + WA+P+ VS FG C+LLK PL SG
Sbjct: 503 GWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESG 562
Query: 531 AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI-KEDNQKKPITEPTSKASDV 589
+++ALATFRILQ PIY LP+ ISMI QTKVSL RI F+ +D Q+ + S +S +
Sbjct: 563 KIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKM 622
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPR 649
+++ G ++WD ++ PT+K + KI E+P+
Sbjct: 623 DVEVSNGAFSWD---DSSPIPTLK-DIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPK 678
Query: 650 ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
ISG +KV G+KAY+ QS WIQ+G + ENILFGK M++ +Y+ VLE C+LN+D+E++
Sbjct: 679 ISGN-LKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFR 737
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
D +V+GERGINLSGGQKQRIQ+ARA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL
Sbjct: 738 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 797
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829
KTV+Y THQLEFL ADL+LVMKDG+I Q+GKY +++ + ++ + + AH +L V+
Sbjct: 798 NKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEIL-ESGTDFMELVGAHTDALAAVD 856
Query: 830 PPQEDKCLSR-VPCQMSQITEERFARPISCGEFSGRS-QDEDTELGRVKWTVYSAFITLV 887
++ ++ + S+++ + + G+ Q+E+ E G+V +TVY ++ L
Sbjct: 857 SYEKGSASAQSTTSKESKVSNDEEKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLA 916
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKRKVSREQLXXXXXXXXXXXXXX 943
Y GALVP+IL+ Q+LFQ L +GSNYW+AW T D K VS L
Sbjct: 917 YGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFC 976
Query: 944 XXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY 1003
RA+L A K A LF M +FRA +SFFD+TP RILNR STDQS VD +P
Sbjct: 977 ILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPS 1036
Query: 1004 RLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTA 1063
+ + WQV +F+ ++ WY+ YYI+ A
Sbjct: 1037 QFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYR------------QYYISAA 1084
Query: 1064 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1123
RELAR+ G ++P++ HFSE+++G TTIR F+QE RF L D YS + FH ME
Sbjct: 1085 RELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAME 1144
Query: 1124 WLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVEN 1183
WLC P I+PS AGLA TY LNLN LQA +IW LC++EN
Sbjct: 1145 WLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLEN 1204
Query: 1184 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCT 1243
KMISVER+LQ+ +IPSE LVI+++RP WP G+I + NL V+Y P LPMVL+G+TCT
Sbjct: 1205 KMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCT 1264
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
F G K G+VGRTG GKSTLIQ LFR+VEP+ G I IDG++I IGL DLRSRLSIIPQ+
Sbjct: 1265 FRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQE 1324
Query: 1304 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
P +F+GTVR+NLDPLE+++D +IWE ++KC L + +R+ + LD+PV+E+G+NWSVGQRQ
Sbjct: 1325 PTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQ 1384
Query: 1364 LVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1423
LVC DEATAS+DTATD +IQ+T+R+ S CTVIT+AHRI +VID+D+
Sbjct: 1385 LVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDM 1444
Query: 1424 VLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1456
VL+LD+G + E+DSP +LLED SSSFSKLVAE+
Sbjct: 1445 VLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEY 1477
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1257 (447.5 bits), Expect = 2.6e-241, Sum P(2) = 2.6e-241
Identities = 271/649 (41%), Positives = 381/649 (58%)
Query: 819 KAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCG--EFSGRS-QDEDTELGRV 875
K HR + + P+ + S ++S++ +E + E R ++E+ E+G+V
Sbjct: 905 KVHRTT--SMESPRVLRTTSMESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQV 962
Query: 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLXXXXXX 935
+ VY + T Y + +++ V +QA M S+YW+A+ T K +VS +
Sbjct: 963 SFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVY 1022
Query: 936 XXXXXXXXXXX--RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTD 993
RA + + +KTAQ F ++ S+ AP+SFFD+TPS RIL+R STD
Sbjct: 1023 VIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTD 1082
Query: 994 QSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILG-ISIWYQVVNTARCH 1052
Q+ VD IP+ + W F++ LG ++IWY+
Sbjct: 1083 QTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTV-FFIIPLGWLNIWYR-------- 1133
Query: 1053 YLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1112
YY+ ++REL R+ KAP++HHFSESIAG TIR F ++ F + ++
Sbjct: 1134 ----GYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANL 1189
Query: 1113 CVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQA 1172
+ FHN G+ EWL P + I P GL+ +YGL+LN +
Sbjct: 1190 RMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLF 1249
Query: 1173 WVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT 1232
W I+ C +ENKM+SVERI QFT+IP+EA IK SRP P WP G I LE++ V+Y P
Sbjct: 1250 WAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPN 1309
Query: 1233 LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1292
P+VLKG+T G +KIGVVGRTGSGKSTLIQ LFR+VEPSGG+I+IDG+DI +GL D
Sbjct: 1310 TPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHD 1369
Query: 1293 LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1352
LRSR IIPQ+P+LF+GTVR+N+DP E++SD+EIW+ + +C L ++V LD+ VA+
Sbjct: 1370 LRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVAD 1429
Query: 1353 DGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVA 1412
+GENWSVGQRQL+C DEATAS+D+ TD +IQ+ IRE+ S CT+I++A
Sbjct: 1430 NGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIA 1489
Query: 1413 HRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1461
HRIPTV+D D VLV+D GK EYDSP +LLE S F+ LV E+ R++
Sbjct: 1490 HRIPTVMDCDRVLVIDAGKAKEYDSPVRLLE-RQSLFAALVQEYALRSA 1537
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2239 (793.2 bits), Expect = 4.0e-232, P = 4.0e-232
Identities = 500/1292 (38%), Positives = 724/1292 (56%)
Query: 200 NISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK 259
N+S +ASA V SK + W+N L +G L L +P + A + L E S K
Sbjct: 248 NVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPKPS 307
Query: 260 TDATS-LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGL 318
+++ + ++ WK + A A V Y+GP LI +FV F SGK Y L
Sbjct: 308 ENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYL 367
Query: 319 VLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK-FAGPSSGI--II 375
VL + L AK VE LT Q+ F + ++G+ +RS L +YK+ + + A + G+ I+
Sbjct: 368 VL--ILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIV 425
Query: 376 NMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST-IFVMVSNTP 434
N + VD +++ D L +H IWL+P+QV +ALV+LY +LGA+ A + T +FV +
Sbjct: 426 NYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFILLGT 485
Query: 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKY 494
N +F +M +D+R+KAT+E L MRV+K +WE F ++E L K+
Sbjct: 486 QRNNGYQFS--LMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKF 543
Query: 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELIS 554
LY+ + + W++P L+S +TF + L L +G V + F+ILQEPI P+ +
Sbjct: 544 LYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMI 603
Query: 555 MIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS-DVAIDIEAGEYAWDAREENFKKPTIK 613
++Q +SL R+ ++ + E + A+++ G ++WD E+N +P
Sbjct: 604 SLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDD-EDN--EPA-- 658
Query: 614 LTD-KMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQT 672
L+D K+ E+ RISG ++V G YV Q+SWI+
Sbjct: 659 LSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQ-VRVCGSTGYVAQTSWIEN 717
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
GT+++NILFG M + Y +VL C+L +D++M GD + +GERGINLSGGQKQRIQLA
Sbjct: 718 GTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLA 777
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792
RAVY DVY+ DD FSAVDAHTG+ +FK+C+ G L KTVL THQ++FL D +LVM
Sbjct: 778 RAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVM 837
Query: 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLS---RVPCQ------ 843
+DGKI +SGKY++L++ + + AH S++ V + ++ R P
Sbjct: 838 RDGKIVESGKYDELVSS-GLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSP 896
Query: 844 --------MSQITEER---FARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
+S + +E F + S ++E+ E G+V VY + T Y
Sbjct: 897 RTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWG 956
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQ--LXXXXXXXXXXXXXXXXXRAVL 950
+ ++L + +Q M S+YW+A+ T K +S + R+
Sbjct: 957 IVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYY 1016
Query: 951 LATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXX 1010
+ + +KTAQ F ++ S+ AP+SFFD+TPS RIL+R STDQ+ VD IP+ L
Sbjct: 1017 VTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVS 1076
Query: 1011 XXXXXXXXXXXXXXXXWQVFPLFLVILG-ISIWYQVVNTARCHYLLQAYYITTARELARM 1069
W F++ LG ++IWY+ N YY+ ++REL RM
Sbjct: 1077 MYTTLLSIFIVTCQYAWPT-AFFVIPLGWLNIWYR--N----------YYLASSRELTRM 1123
Query: 1070 VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXX 1129
KAPI+HHFSESIAG TIR F ++ F + ++D + FHN G+ EWL
Sbjct: 1124 DSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRL 1183
Query: 1130 XXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1189
P + I P GL+ +YGL+LN + + I+ C VENKM+SVE
Sbjct: 1184 ELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVE 1243
Query: 1190 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKK 1249
RI QFT+IPSE+ K + P WP G + LE+L V+Y P P+VLKGIT G +K
Sbjct: 1244 RIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEK 1303
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1309
+GVVGRTGSGKSTLIQ LFR+VEPSGG+I+IDG+DIS +GL DLRSR IIPQ+P+LF+G
Sbjct: 1304 VGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEG 1363
Query: 1310 TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXX 1369
TVR+N+DP EQ+SD+EIW+ + +C L ++V LD+ V ++GENWSVGQRQL+C
Sbjct: 1364 TVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGR 1423
Query: 1370 XXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1429
DEATAS+D+ TD VIQ+ IRE+ + CT+I++AHRIPTV+D D VLV+D
Sbjct: 1424 VMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDA 1483
Query: 1430 GKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1461
GK E+DSP +LLE S F+ LV E+ R++
Sbjct: 1484 GKAKEFDSPARLLE-RPSLFAALVQEYALRSA 1514
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 1.0e-184, Sum P(3) = 1.0e-184
Identities = 209/514 (40%), Positives = 298/514 (57%)
Query: 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXX 1014
+IK ++ M +V +P+SFFD+TP RILNR S DQ T+D I R G
Sbjct: 1093 SIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIA-RTLGMFLNTFC 1151
Query: 1015 XXXXXXXXXXXXWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRK 1074
W V P F+++ +V Y +Q YY+ ++REL R+ G +
Sbjct: 1152 QVVGSIIVIA--W-VSP-FIILA-------MVPVGALFYFIQKYYLNSSRELTRLEGVSR 1200
Query: 1075 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXX 1134
+PI HFSE++AG TTIR F RF+ + L+D+ + N + WL
Sbjct: 1201 SPIYAHFSETLAGVTTIRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGA 1260
Query: 1135 XXXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF 1194
RS I+ AGL TY L + W++ C++EN ++S+ERI ++
Sbjct: 1261 CLVSCAVLYTVLA-RSRIEAGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEY 1319
Query: 1195 TNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVG 1254
+PSEAPL S P WPS GKI +NL + Y L VL+GI CT + K+G+VG
Sbjct: 1320 CLLPSEAPLFNDKSVPM-SWPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVG 1378
Query: 1255 RTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1314
RTG+GKS+L QALFR+VEP G I IDG+DI+ +GL LRSR++IIPQDP+LF G+VR N
Sbjct: 1379 RTGAGKSSLTQALFRLVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYN 1438
Query: 1315 LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXX 1374
LDP +Q+ D EIWE I HL + ++ LDA V + G+N+SVGQRQL+
Sbjct: 1439 LDPFDQYDDHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKK 1498
Query: 1375 XXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
DEA++SID A+D +IQ+TIR + + CTV+T+AHR+ T+ D+D ++VLD+G+++E
Sbjct: 1499 ANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIE 1558
Query: 1435 YDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRD 1468
YDSP +LL++ S + LV + S+S +N D
Sbjct: 1559 YDSPSELLKNQDSIYYSLV-----KASESKQNID 1587
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| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 1.2e-171, Sum P(3) = 1.2e-171
Identities = 213/611 (34%), Positives = 326/611 (53%)
Query: 866 QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIA-WATDEKRKV 924
+ E E GRVK++VY +++ + V + + +G N W++ W D
Sbjct: 971 EKEMMETGRVKFSVYLQYLSAM-GWWYVGFSFVFYFIQNVAVIGQNLWLSDWTDDSIEYF 1029
Query: 925 S-------REQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSVFRAPISF 977
+ R+ +LLA +I ++ L +++T++ + P+ F
Sbjct: 1030 NQTYPNHIRDTRIGVFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTNILKVPMMF 1089
Query: 978 FDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVIL 1037
FD+TPS RI+NR + D TVD IP LF++ L
Sbjct: 1090 FDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGT-------------LFVICL 1136
Query: 1038 GISIWYQVV-NTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQ 1096
I+ VV A +Y +Q +Y+ T+R+L R+ ++PI HF E+++G + IR +
Sbjct: 1137 ATPIFTAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGH 1196
Query: 1097 ENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSL 1156
++RFL + ID + + WL R +++ L
Sbjct: 1197 QDRFLKHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVIS-RDSLNSGL 1255
Query: 1157 AGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS 1216
GL+ +Y LN+ W++ +E +++VER+ ++ I +EAP V + RP +WPS
Sbjct: 1256 VGLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVT-SVRPPDDWPS 1314
Query: 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
+G I E+ V+Y P L +VL G+TC +KIG+VGRTG+GKS+L LFR+VE + G
Sbjct: 1315 AGNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADG 1374
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
RILID +DI+ +GL DLRSRL+IIPQDP+LF GT+R NLDP + SD EIW V+ HL
Sbjct: 1375 RILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLK 1434
Query: 1337 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1396
E VR L+ V+E GEN S+GQRQL+C DEATA++D TD++IQ
Sbjct: 1435 EYVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQ 1494
Query: 1397 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1456
TIR E S CTV+T+AHR+ T++D+ V+VLD GK++E+DSP +LL FS + +
Sbjct: 1495 STIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLS-KPGHFSSMAEDA 1553
Query: 1457 -LRRTSKSNRN 1466
+RR + +++
Sbjct: 1554 GIRREEEQSQS 1564
|
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| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 1.4e-171, Sum P(3) = 1.4e-171
Identities = 217/597 (36%), Positives = 319/597 (53%)
Query: 868 EDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI-AWATDEK----- 921
E + G+VK+++Y ++ + ++V ILL V++ +GSN W+ AW +D K
Sbjct: 953 EFVQTGKVKFSIYLKYLQAIGWCSIV-FILLGFVIYYVAFIGSNLWLSAWTSDSKIYNGT 1011
Query: 922 -RKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQR-LFLNMITSVFRAPISFFD 979
S+ L A + + A L ++ ++ RAP+SFFD
Sbjct: 1012 NYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPMSFFD 1071
Query: 980 STPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGI 1039
+TP RI+NR + D TVD +P L +F + ++ LGI
Sbjct: 1072 TTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLAT-PIFVVVIIPLGI 1130
Query: 1040 SIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1099
I+ V Q +Y+ T+R+L R+ ++PI HFSE+++G + IR F + R
Sbjct: 1131 -IYVSV----------QIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQR 1179
Query: 1100 FLLRSHSLID-DYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAG 1158
FL +S + ID + CV F + WL R+ + G
Sbjct: 1180 FLKQSETAIDTNQKCV-FSWITSNRWLAVRLELIGNLIVFFASLMMVIY-RNNLSGDTVG 1237
Query: 1159 LAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSG 1218
+ LN+ W++ +E +++VERI ++ N+ +EAP V + RP WPS G
Sbjct: 1238 FVLSNALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVT-DKRPPEGWPSKG 1296
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+I+ N V+Y P L +VLKGITC +KIGVVGRTG+GKS+L LFR++E +GG+I
Sbjct: 1297 EIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQI 1356
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
IDGVDI+ IGL DLR +L+IIPQDP+LF G++R NLDP +SD+EIW+ + HL
Sbjct: 1357 TIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSF 1416
Query: 1339 VRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQT 1398
V Q L V E G+N S+GQRQL+C DEATA++D TD +IQ T
Sbjct: 1417 VAGLQAGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTT 1476
Query: 1399 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455
I+ E S CT IT+AHR+ T++D+D V+VLD GK++EYDSP +LL+ N F + E
Sbjct: 1477 IQTEFSHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLK-NPGPFYFMAQE 1532
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| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1646 (584.5 bits), Expect = 2.6e-171, Sum P(2) = 2.6e-171
Identities = 398/1279 (31%), Positives = 656/1279 (51%)
Query: 200 NISTFASAGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETA--NDASSLLEES 254
NI A + S I F W+ L Q G I + ++ + Q+ET EES
Sbjct: 225 NICPERYASIFSGIYFSWMTPLMQLGYRKPITERDVWQLDQWDQTETLIKRFQRCWTEES 284
Query: 255 LRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFV-SFLSGKHDHSS 313
R + +L + W L F + ++ ++GP ++++ + S + G D +
Sbjct: 285 RRPKPWLLRALNNSLGRRFW----LGGIFKVGHDLSQFVGPVILSHILQSMIEG--DPA- 337
Query: 314 YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---S 370
G V A + F T L Q Q++ R+G R+RS L I+ +S+ + +
Sbjct: 338 -WVGYVYAFLIFFGVTFGVLCQSQYFQHVGRVGFRLRSTLVAAIFHKSLRLTNKARKNFA 396
Query: 371 SGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMV 430
SG + NMI D + +H +W P ++ +++V+LY+ LG A F +L +F+++
Sbjct: 397 SGKVTNMITTDANALQLIAEQLHGLWSAPFRIIVSMVLLYQQLGVASIFGSLI--LFLLI 454
Query: 431 S-NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERD 489
T + + + ++ D R+ E L SM ++K +WE+ F E
Sbjct: 455 PFQTLIVRKMRKLTKEGLQWTDKRVGIIYEILASMDIVKCYAWEKSFESRIQGIRNEELS 514
Query: 490 SLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNL 549
+K + +F+ ++P +V++++FGV +LL LT ++L+ F +L+ P+ L
Sbjct: 515 WFRKAQLLSAFNSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTL 574
Query: 550 PELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKK 609
P LIS VSL RI+E + + + P + AI I+ G ++WD++ K
Sbjct: 575 PNLISQAVNANVSLQRIEELLLSEERILAQNPPLQPGAP-AISIKNGYFSWDSKTS---K 630
Query: 610 PTIKLTD-KMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSS 668
PT L+D ++I E+ +++ + G AYVPQ S
Sbjct: 631 PT--LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVS 688
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
WI T+RENILFG D Y ++ AL D++++ D + +GERG+N+SGGQKQR
Sbjct: 689 WIFNATLRENILFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQR 748
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADL 788
+ +ARAVYSNSD+YIFDDPFSA+DAH +F C+ L KT + T+QL FL D
Sbjct: 749 VSMARAVYSNSDIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDR 808
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ-EDKCLSRVPCQMSQI 847
++++ +G I++ G + +L ++ L +++ + +D D+ +S++ ++
Sbjct: 809 IILVSEGMIKEEGNFAEL--SKSGTLFKKLMENAGKMDATQEVNTNDENISKLGPTVTID 866
Query: 848 TEERFARPISCGEFSGRS---QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQ 904
ER I G++ GRS + E+ E G + W V + V +V ++L+C + +
Sbjct: 867 VSERSLGSIQQGKW-GRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTE 925
Query: 905 ALQMGSNYWIAWATDEK--RKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRL 962
L++ S+ W++ TD+ + S + L + ++ A+RL
Sbjct: 926 VLRVLSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRL 985
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXX 1022
M+ S+ RAP+ FF++ P+ R++NR S D +D ++ +
Sbjct: 986 HDAMLNSILRAPMLFFETNPTGRVINRFSKDIGDIDRNVANLM--------------NMF 1031
Query: 1023 XXXXWQV---FPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILH 1079
WQ+ F L ++ IS+W ++ Y YY +T+RE+ R+ ++PI
Sbjct: 1032 MNQLWQLLSTFALIGIVSTISLW-AIMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYA 1090
Query: 1080 HFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXX---- 1135
F E++ G ++IR + +R + +D+ T + + WL
Sbjct: 1091 LFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWL 1150
Query: 1136 XXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1195
A+ S GL +Y LN+ L + V+ EN + SVER+ +
Sbjct: 1151 TATFAVLRYGNAENQAVFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYI 1210
Query: 1196 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITC-TFPGEKKIGVVG 1254
++PSEA +I+N+RP WPS G I+ E++ ++Y P LP VL G++ +P EK +GVVG
Sbjct: 1211 DLPSEATAIIENNRPVSGWPSRGSIQFEDVHLRYRPGLPPVLHGLSFFVYPSEK-VGVVG 1269
Query: 1255 RTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1314
RTG+GKS+++ AL+R+VE GRILID D++ GL DLR LSIIPQ P+LF GTVR N
Sbjct: 1270 RTGAGKSSMLNALYRIVELEKGRILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329
Query: 1315 LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXX 1374
+DP +H+D ++WE + + H+ +++ ++ LDA V+E GEN+SVGQRQL+
Sbjct: 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389
Query: 1375 XXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
DEATAS+D TD++IQ+TIREE CT++ +AHR+ T+ID D +LVL G+VLE
Sbjct: 1390 SKILFLDEATASVDVRTDSLIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLE 1449
Query: 1435 YDSPRQLLEDNSSSFSKLV 1453
YDSP++LL ++S+F K+V
Sbjct: 1450 YDSPQELLSRDTSAFFKMV 1468
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3373 | 0.8319 | 0.8274 | yes | no |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.4915 | 0.9482 | 0.9207 | yes | no |
| O88563 | MRP3_RAT | No assigned EC number | 0.3243 | 0.9102 | 0.8791 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3325 | 0.8340 | 0.8092 | yes | no |
| B2RX12 | MRP3_MOUSE | No assigned EC number | 0.3189 | 0.8714 | 0.8411 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3328 | 0.8217 | 0.9130 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VIII.1931.1 | multidrug resistance protein ABC transporter family (1361 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1470 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-144 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-119 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-95 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-90 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-86 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-80 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-72 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-70 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-63 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-60 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-59 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-57 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-56 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-52 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-52 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-51 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-51 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-50 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-49 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-48 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-46 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-44 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-43 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-43 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-42 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-42 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-41 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-40 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-40 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-40 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-40 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-39 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-37 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-36 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-35 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-35 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-34 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-34 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-34 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-34 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-33 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-33 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-33 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-32 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-32 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-31 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-31 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-30 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-30 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-30 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-29 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-29 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-29 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-29 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-28 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-27 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-26 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-26 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-26 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-25 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-25 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-25 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-25 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-24 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-23 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-23 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-22 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-22 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-21 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-21 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-20 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-19 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-19 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-19 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-19 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-18 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-18 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-18 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-18 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-18 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-17 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-17 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-17 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-17 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-17 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-17 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-16 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-16 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-16 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-16 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-15 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-15 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-15 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-15 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-15 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-15 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-14 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 6e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-13 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-13 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-13 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-12 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-12 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 9e-12 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-11 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-11 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-10 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-10 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-10 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-09 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-09 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-08 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 9e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-07 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-07 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-05 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-05 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-04 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 7e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.003 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 804 bits (2079), Expect = 0.0
Identities = 448/1303 (34%), Positives = 714/1303 (54%), Gaps = 100/1303 (7%)
Query: 207 AGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETANDA-SSLLEESLRKQKTDA 262
A + S+I F W+ L Q G + + ++ + Q+ET + +E L+K K
Sbjct: 232 ANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKP-- 289
Query: 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFV-SFLSGKHDHSSYHYGLVLA 321
L + + +++ L F N ++ ++GP L+ + S +G+ Y Y
Sbjct: 290 -WLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYA---F 345
Query: 322 SVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMI 378
S+F+ + L + Q++ R+G R+RS L ++++S+ + G +SG I N++
Sbjct: 346 SIFV-GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLM 404
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS-NTPLAN 437
D E + +H +W P ++ +A+V+LY+ LG A +L + +M T + +
Sbjct: 405 TTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLM--LVLMFPIQTFIIS 462
Query: 438 RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497
+ ++ ++ D RI +E L +M +K +WE F K+ +R+ E +K
Sbjct: 463 KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522
Query: 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
+ +F+ + P LV+V++FGV LL LT ++L+ F +L+ P++ LP LI+
Sbjct: 523 SAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAV 582
Query: 558 QTKVSLYRIQE-FIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
VSL R++E + E+ P P + AI I+ G ++WD++ E +PT L++
Sbjct: 583 NANVSLKRLEELLLAEERVLLP--NPPLEPGLPAISIKNGYFSWDSKAE---RPT--LSN 635
Query: 617 -KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI 675
+ + GS VA+ GS G GK+SL+S++LGE+P S A++ + G AYVPQ SWI T+
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATV 695
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
R+NILFG YE ++ AL D+++ GDL+ +GERG+N+SGGQKQR+ +ARAV
Sbjct: 696 RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
YSNSDVYIFDDP SA+DAH G +F +C+ L KT + T+QL FL D ++++ +G
Sbjct: 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815
Query: 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARP 855
I++ G YE+L N L +++ + +++ E+ S+ P
Sbjct: 816 MIKEEGTYEELSN--NGPLFQKLMENAGKMEEY---VEENGEEEDDQTSSK--------P 862
Query: 856 ISCGEFSGRSQD-----------------EDTELGRVKWTVYSAFITLVYKGAL-----V 893
++ G + +D E+ E G V W V YK AL V
Sbjct: 863 VANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLER-----YKNALGGAWVV 917
Query: 894 PVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQL--IGVFIFLSGGSSFFILGRAVLL 951
++ LC VL + ++ S+ W++ TD+ + L ++ LS G L + L
Sbjct: 918 MILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWL 977
Query: 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011
++ A+RL M+ S+ RAP+SFF + P RI+NR + D +D ++ +
Sbjct: 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQ 1037
Query: 1012 LIQLLSIIILM----SQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELA 1067
+ QLLS +L+ + + W + PL ++ G YL YY +TARE+
Sbjct: 1038 IFQLLSTFVLIGIVSTISLWAIMPLLVLFYGA-------------YL---YYQSTAREVK 1081
Query: 1068 RMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCL 1127
R+ ++P+ F E++ G +TIR + +R + +D+ T N + WL +
Sbjct: 1082 RLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAI 1141
Query: 1128 RINLLFNFAFFLVLIILVTLPRSAIDP----SLAGLAATYGLNLNVLQAWVIWNLCNVEN 1183
R+ L +L V A + S GL +Y LN+ L V+ EN
Sbjct: 1142 RLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAEN 1201
Query: 1184 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCT 1243
+ +VER+ + ++PSEAPLVI+N+RP P WPSSG I+ E+++++Y P LP VL G++
Sbjct: 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFE 1261
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
+K+G+VGRTG+GKS+++ ALFR+VE GRILIDG DIS GL DLR L IIPQ
Sbjct: 1262 ISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQA 1321
Query: 1304 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
P+LF GTVR NLDP +H+D ++WE + + HL +++R++ LDA V+E GEN+SVGQRQ
Sbjct: 1322 PVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1423
L+ LAR LL++ +ILVLDEATA++D TD +IQ+TIREE CT++ +AHR+ T+ID D
Sbjct: 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1441
Query: 1424 VLVLDEGKVLEYDSPRQLLEDNSSSFSKLV-------AEFLRR 1459
+LVLD G+V+E+D+P LL + S+FSK+V A++LR
Sbjct: 1442 ILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 787 bits (2034), Expect = 0.0
Identities = 463/1504 (30%), Positives = 765/1504 (50%), Gaps = 145/1504 (9%)
Query: 38 RRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATV 97
R D GYI M L L++I+ FY +W + +V+ L +
Sbjct: 52 SRHDRGYIQMTHLNK-TKTAL-GFLLWIVCWADLFYSFWERSHGRAPAPVFLVSPTLLGI 109
Query: 98 VALCSRYYRTLGEHK--RWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKA 155
L + + L K + +++ +W+V LV L + +L L + +
Sbjct: 110 TMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTF 169
Query: 156 VDFVSLPL--LVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKI 213
+ +L L LVL CF D S PL E + + N +SA LS+I
Sbjct: 170 YIYFALVLSQLVLSCF---------SDKS----PLFSETNHD---PNPCPESSASFLSRI 213
Query: 214 TFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQ--------------- 258
TF W+ + G Q LE + + + +T+ +L E+ +K+
Sbjct: 214 TFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGK 273
Query: 259 ----------KTDATSLPQVII----HAVWK-------------SLALNAAFAGVNTIAS 291
+ DA + +I H K ++ F ++ +
Sbjct: 274 KDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMM 333
Query: 292 YIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRS 351
+IGP +++ + F++ Y +F+ A +++L Q++ G+R+++
Sbjct: 334 FIGPQILSLLIRFVNDPMAPDWQGY-FYTGLLFVCA-CLQTLILHQYFHICFVSGMRIKT 391
Query: 352 ALTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVI 408
A+ +Y++++ I + S G I+N+++VD +R D YI+ IW P+QV LAL
Sbjct: 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYF 451
Query: 409 LYKNLGAAPAFAALFSTIFVMVS-NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467
L+ NLG P+ A + + +MV N +A + + + M++KD RIK +E L ++VL
Sbjct: 452 LWLNLG--PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVL 509
Query: 468 KLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KT 525
KL +WE FL K+ +R+ E LKK Y + F + +P LV++ITF V + +
Sbjct: 510 KLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENN 569
Query: 526 PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE--PT 583
L + +LA F IL+ P+ LP +IS I Q VSL R++ F+ + + E
Sbjct: 570 ILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTI 629
Query: 584 SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI 643
+I + + W AR+ PT+ I +G+ VAV G VG GKSSLLS++
Sbjct: 630 KPGEGNSITVHNATFTW-ARDL---PPTLNGIT-FSIPEGALVAVVGQVGCGKSSLLSAL 684
Query: 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703
L E+ ++ G + + G AYVPQ +WIQ ++RENILFGK + + +Y++VLE CAL D+
Sbjct: 685 LAEMDKVEGH-VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743
Query: 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763
E+ GD + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+
Sbjct: 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 764 L--MGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS--ELVR--- 816
+ G+L KT + TH + +L D+++VM GKI + G Y++L+ + E +R
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYA 863
Query: 817 ----QMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISC----GEFSGR---- 864
Q V+ ++ L ++ + ++ R +S R
Sbjct: 864 PDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGS 923
Query: 865 ----------------SQDEDTELGRVKWTVYSAFITLV--YKGALVPVILLCQVLFQAL 906
+ + + G+V+ +VY ++ + + L + +C
Sbjct: 924 SAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCN---HVS 980
Query: 907 QMGSNYWI-AWATD---EKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRL 962
+ SNYW+ W D + + + V+ L F + G ++ ++ I+ ++ L
Sbjct: 981 ALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVL 1040
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIP---YRLAGLAFALIQLLSII 1019
+++ + R+P+SFF+ TPS ++NR S + TVD+ IP G F +I L +I
Sbjct: 1041 HQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI 1100
Query: 1020 ILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILH 1079
+L + P+ VI + ++ +Q +Y+ ++R+L R+ ++P+
Sbjct: 1101 LLAT-------PIAAVI--------IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYS 1145
Query: 1080 HFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFL 1139
HF+E++ G + IR F ++ RF+ +S +D+ + + WL +R+ + N L
Sbjct: 1146 HFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN-CIVL 1204
Query: 1140 VLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPS 1199
+ + R ++ L GL+ +Y L + W++ +E +++VER+ +++
Sbjct: 1205 FAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEK 1264
Query: 1200 EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1259
EAP I+ + P WP G++E N ++Y L +VL+ I T G +K+G+VGRTG+G
Sbjct: 1265 EAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAG 1324
Query: 1260 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE 1319
KS+L LFR+ E + G I+IDG++I+ IGL DLR +++IIPQDP+LF G++R NLDP
Sbjct: 1325 KSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384
Query: 1320 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379
Q+SD+E+W + HL V LD AE GEN SVGQRQLVCLAR LL+K +ILV
Sbjct: 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV 1444
Query: 1380 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1439
LDEATA++D TDN+IQ TIR + CTV+T+AHR+ T++D V+VLD+G+V E+ +P
Sbjct: 1445 LDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504
Query: 1440 QLLE 1443
LL+
Sbjct: 1505 NLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 748 bits (1932), Expect = 0.0
Identities = 423/1281 (33%), Positives = 696/1281 (54%), Gaps = 64/1281 (4%)
Query: 200 NISTFASAGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETAND--ASSLLEES 254
NI A + S+I F W+ L Q G I + ++ + Q+ET EES
Sbjct: 225 NICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES 284
Query: 255 LRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY 314
R + +L + W L F + ++ ++GP ++++ L +
Sbjct: 285 RRPKPWLLRALNNSLGGRFW----LGGIFKIGHDLSQFVGPVILSHL---LQSMQEGDPA 337
Query: 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SS 371
G V A + F T L + Q++ R+G R+RS L I+ +S+ + +S
Sbjct: 338 WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFAS 397
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMV- 430
G + NMI D + +H +W P ++ +++V+LY+ LG A F +L +F+++
Sbjct: 398 GKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLI--LFLLIP 455
Query: 431 SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS 490
T + + + ++ D R+ +E L SM +K +WE+ F ++ +R E
Sbjct: 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSW 515
Query: 491 LKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLP 550
+K + +F+ + P +V++++FGV +LL LT ++L+ F +L+ P+ LP
Sbjct: 516 FRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLP 575
Query: 551 ELISMIAQTKVSLYRIQEFIKEDNQ---KKPITEPTSKASDVAIDIEAGEYAWDAREENF 607
L+S + VSL RI+E + + + + P +P + A I I+ G ++WD++
Sbjct: 576 NLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPA----ISIKNGYFSWDSKTS-- 629
Query: 608 KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666
KPT L+D ++I GS VA+ G G GK+SL+S++LGE+ +++ + G AYVPQ
Sbjct: 630 -KPT--LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQ 686
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
SWI T+RENILFG D Y ++ AL D+++ DL+ +GERG+N+SGGQK
Sbjct: 687 VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +ARAVYSNSD+YIFDDP SA+DAH +F C+ L KT + T+QL FL
Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM 806
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD-QVNPPQEDKCLSRVPCQMS 845
D ++++ +G I++ G + +L ++ L +++ + +D D+ + ++ ++
Sbjct: 807 DRIILVSEGMIKEEGTFAEL--SKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864
Query: 846 QITEERFARPISCGEFSGRS---QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVL 902
ER G+ GRS + E+ E G + W V + V +V ++L+C +
Sbjct: 865 IDVSERNLGSTKQGK-RGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLT 923
Query: 903 FQALQMGSNYWIAWATDEK--RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960
+ L++ S+ W++ TD+ + S I V+ L G + L + ++ A+
Sbjct: 924 TEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAK 983
Query: 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020
RL M+ S+ RAP+ FF + P+ R++NR S D +D ++ + L QLLS
Sbjct: 984 RLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043
Query: 1021 LMSQAA----WQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAP 1076
L+ + W + PL ++ ++YQ +T+RE+ R+ ++P
Sbjct: 1044 LIGTVSTISLWAIMPLLILFYAAYLYYQ----------------STSREVRRLDSVTRSP 1087
Query: 1077 ILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA 1136
I F E++ G ++IR + +R + +D+ T N + WL +R+ L
Sbjct: 1088 IYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVM 1147
Query: 1137 FFLVLIILV----TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192
+L V A S GL +Y LN+ L + V+ EN + SVER+
Sbjct: 1148 IWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVG 1207
Query: 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGV 1252
+ ++PSEA +I+N+RP WPS G I+ E++ ++Y P LP VL G++ +K+GV
Sbjct: 1208 NYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267
Query: 1253 VGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1312
VGRTG+GKS+++ ALFR+VE GRI+ID D++ GL DLR LSIIPQ P+LF GTVR
Sbjct: 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327
Query: 1313 TNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372
N+DP +H+D ++WE + + H+ +++ ++ LDA V+E GEN+SVGQRQL+ LAR LL
Sbjct: 1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387
Query: 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432
++ +ILVLDEATAS+D TD++IQ+TIREE CT++ +AHR+ T+ID D +LVL G+V
Sbjct: 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447
Query: 1433 LEYDSPRQLLEDNSSSFSKLV 1453
LEYDSP++LL ++S+F ++V
Sbjct: 1448 LEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 480 bits (1236), Expect = e-144
Identities = 284/889 (31%), Positives = 438/889 (49%), Gaps = 65/889 (7%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ +G V G+ GSGKS+LL S+L + IS + AYVPQ +WI T+R NI
Sbjct: 683 VPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNI 741
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
LF + + + + L D+ G + +GE+G+NLSGGQK R+ LARAVY+N
Sbjct: 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR 801
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
DVY+ DDP SA+DAH G + ++C +G L+ KT + THQ+ + AD V+ + DG++E
Sbjct: 802 DVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF 861
Query: 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQIT----------- 848
SG D + + K + + E + P
Sbjct: 862 SGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE 921
Query: 849 -EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ 907
+ A + G R E+ G V W+ Y A++ +L + + +
Sbjct: 922 GGDGAALDAAAGRLMTR---EEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVT 978
Query: 908 MGSNYWIA-WATDEKRKVSREQL-IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965
+ S W++ W+T + + L + + I L G S + R L + ++ + +
Sbjct: 979 VSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPL--RFFLSYEAMRRGSRNMHRD 1036
Query: 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025
++ SV R +SFFD+TP RILNR S D +D +P L L + S I++ S +
Sbjct: 1037 LLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS 1096
Query: 1026 AWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESI 1085
P LV L V +Y L +Y + RE+ R+ K+P+ E++
Sbjct: 1097 Q----PFVLVAL--------VPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 1086 AGATTIRCFNQENRFLLRSHSLID-DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1144
G+ TI + + + + + +D YSC N WL +R+ L N ++ +I
Sbjct: 1145 QGSATITAYGKAHLVMQEALRRLDVVYSCSYLENV-ANRWLGVRVEFLSNIVVTVIALIG 1203
Query: 1145 VT---LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT-NIPSE 1200
V L ++ + L L+ T + W++ + VE M SVER+L +T +P E
Sbjct: 1204 VIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHE 1263
Query: 1201 A-----------------------PLVIKNSRPSPEWP---SSGKIELENLLVQYNPTLP 1234
+VI+ + P+ P +G + E + ++Y LP
Sbjct: 1264 DMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLP 1323
Query: 1235 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
+VL+G++ +K+G+VGRTGSGKSTL+ R+VE GG I ++G +I GL++LR
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 1295 SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354
+ S+IPQDP+LF GTVR N+DP + S E+W + L E V + +D+ V E G
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVL-DEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
N+SVGQRQL+C+AR LLKK +L DEATA+ID A D IQ T+ S TVIT+AH
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAH 1503
Query: 1414 RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSK 1462
R+ TV D ++V+D G V E SPR+L+ + S F +V R +K
Sbjct: 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAK 1552
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-119
Identities = 133/221 (60%), Positives = 172/221 (77%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G IE +N+ ++Y P LP VLK I+ + +K+G+VGRTGSGKS+L+ ALFR+VE S G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1337
ILIDGVDIS IGL DLRSR+SIIPQDP+LF GT+R+NLDP ++SD+E+W+ + + L E
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
V LD V E GEN SVGQRQL+CLAR LL+K +ILVLDEATAS+D TD +IQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1398 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438
TIRE CTV+T+AHR+ T+ID+D +LVLD+G+V+E+DSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 2e-95
Identities = 109/207 (52%), Positives = 151/207 (72%), Gaps = 4/207 (1%)
Query: 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650
I +E + WD+ E+ T+K + +++ KG VA+ G VGSGKSSLLS++LGE+ ++
Sbjct: 1 ISVEDASFTWDSGEQETS-FTLKDIN-LEVPKGELVAIVGPVGSGKSSLLSALLGELEKL 58
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
SG+ + V G AYV Q WIQ GTIRENILFGK + YE+V++ CAL D+E+ DGD
Sbjct: 59 SGS-VSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGD 117
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLS 769
L+ +GE+GINLSGGQKQRI LARAVYS++D+Y+ DDP SAVDAH G H+F+ C++G LL+
Sbjct: 118 LTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGK 796
KT + THQL+ L AD ++V+ +G+
Sbjct: 178 NKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 2e-90
Identities = 126/225 (56%), Positives = 162/225 (72%), Gaps = 18/225 (8%)
Query: 1214 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1273
WP G+IE+ENL V+Y P LP VLK ++ +KIG+VGRTG+GKSTLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1274 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKC 1333
G+I IDG+DIS I L+DLRS L+IIPQDP LF GT+R+NLDP +++SD+EI+ +
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
V+E G N S GQRQL+CLAR LLK+ R+LVLDEATASID ATD
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438
+IQ+TIREE + T++T+AHR+ T+ID D +LV+D G+V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 3e-86
Identities = 150/563 (26%), Positives = 258/563 (45%), Gaps = 22/563 (3%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE--KRKVSREQLIGVFIFLSGGSSFFIL 945
K L+ + +L +L L + I D +L+ + + L+
Sbjct: 11 LKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRA 70
Query: 946 GRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRL 1005
++ L + + K L ++ + R P+SFFD S +++R + D V + L
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 1006 AGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARE 1065
+ +++ L+ ++L+ +W++ + L+IL + + + +R+
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL------------VLSLLARKSRK 178
Query: 1066 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1125
L+R V + ES++G I+ F E+R L R ++ L
Sbjct: 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238
Query: 1126 CLRINLLFNFAFFLVLIILVTLPRSA-IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENK 1184
+ LL + LVL + L S + Y L L + + ++
Sbjct: 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRA 298
Query: 1185 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1244
+ ER+ + + E P P + G IE EN+ Y P VLK I+ +
Sbjct: 299 SAAAERLFELLDEEPEVE-----DPPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSI 352
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1304
+K+ +VG +GSGKSTLI+ L R+ +P+ G ILIDG+DI I L LR R+ I+ QDP
Sbjct: 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412
Query: 1305 MLFQGTVRTNLDP-LEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
+LF GT+R N+ +D+EI E + + E + D V E G N S GQRQ
Sbjct: 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1423
+ +AR LL+ IL+LDEAT+++DT T+ +IQ +++ T + +AHR+ T+ + D
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADR 532
Query: 1424 VLVLDEGKVLEYDSPRQLLEDNS 1446
++VLD G+++E + +LL
Sbjct: 533 IIVLDNGRIVERGTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 2e-80
Identities = 179/619 (28%), Positives = 312/619 (50%), Gaps = 57/619 (9%)
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGS--NYWIAWAT------ 918
+ + W Y +IT LV V++ C V+F A S W+
Sbjct: 843 ERENVFETTTWNTYLRYITT--NRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNY 900
Query: 919 -DEKRKVSREQLIGVFIFLSGGSSFFI-------------LG--RAVLLATIAIKTAQRL 962
D++ + + + ++ S+++I LG R + L + ++RL
Sbjct: 901 VDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRL 960
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILM 1022
M+ SV +AP++ ++ + RILNR + D + +D +P L F IQL I++
Sbjct: 961 HEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL----FDFIQLTLIVL-- 1014
Query: 1023 SQAAWQVFPLFLV-ILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHF 1081
+F+V +L I+ + A +L+AY++ T+++L ++ ++PI H
Sbjct: 1015 -------GAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHL 1067
Query: 1082 SESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL 1141
S+ G TIR F +++ F H ++ ++ F T+ W +RI+++F FF +
Sbjct: 1068 ITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF--VFFFIA 1125
Query: 1142 IILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1201
+ + + + G+ T +N+ W + + +V+ M SV R+ +F ++P E
Sbjct: 1126 VTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEE 1185
Query: 1202 P--------------LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGE 1247
P LVI+N WPS G+++++ L +Y VL+ ++ + G
Sbjct: 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGG 1245
Query: 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307
+++G++GRTGSGKSTL+ AL R++ + G I IDGV + + LQ R +IPQ +F
Sbjct: 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIF 1304
Query: 1308 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367
GT R NLDP EQ SD+EIW+V + L ++ Q LD + + G S G +QL+CL
Sbjct: 1305 SGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364
Query: 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1427
AR +L K +IL+LDE +A +D T +I++T+++ S CTVI HR+ +++ LV+
Sbjct: 1365 ARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVI 1424
Query: 1428 DEGKVLEYDSPRQLLEDNS 1446
+ V +YDS ++LL + S
Sbjct: 1425 EGSSVKQYDSIQKLLNETS 1443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 5e-72
Identities = 114/236 (48%), Positives = 159/236 (67%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G+I++ +L V+Y L VLK + +K+G+ GRTGSGKS+L A FR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1337
I+IDG+DIS + L LRSRLSII QDP+LF G++R NLDP + +D +WE + L
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
+V+ LDA V E GEN+SVGQRQL CLAR ++K IL++DEATASID AT+N++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1398 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
+ + TV+T+AHR+ T++D DLVLVL G ++E D+P LL F+ LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 7e-70
Identities = 165/584 (28%), Positives = 262/584 (44%), Gaps = 51/584 (8%)
Query: 883 FITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKV----SREQLIGVFIFL 936
FI L+ Y+ L V+L +L Q L + + + D KV SR L + I L
Sbjct: 145 FIPLLFKYRRLLFEVLLA-SLLLQLLALATPLFSQIVID---KVLPDASRSTLTVLAIGL 200
Query: 937 SGGSSFFILGRAVL--LATIAI-KTAQRLFLNMITSVFRA----PISFFDSTPSSRILNR 989
L A+L L T I +RL L + FR P+S+F+ I++R
Sbjct: 201 L----LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISR 256
Query: 990 CSTDQSTVDTDIPYRLAGLAF-ALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNT 1048
+ I L G +I LL +I ++ + L L++L ++
Sbjct: 257 VRELEQ-----IREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITL 311
Query: 1049 ARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLI 1108
L + R+L +++ E+I G T++ E RF + + +
Sbjct: 312 IFQPLLRRKT-----RKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRL 362
Query: 1109 DDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDP--SLAGLAATYGLN 1166
+ F L +LL + L+L L ++ +L L A L
Sbjct: 363 AKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL---VLEGELTLGQLVAFNMLA 419
Query: 1167 LNVLQAWVIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1222
+ I L + +++ER+ + P E + G+IE
Sbjct: 420 GYFISP--ITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEF 474
Query: 1223 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1282
EN+ +Y P P VL+ ++ P +K+ +VGR+GSGKSTL++ L + +P GRIL+DG
Sbjct: 475 ENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534
Query: 1283 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQ 1341
VD++ I L LR ++ + QDP LF G++R N+ +D+EI E E +
Sbjct: 535 VDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIEN 594
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
D PV E G N S GQRQ + LAR LL K +IL+LDEAT+++D T+ +I Q + +
Sbjct: 595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654
Query: 1402 ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
TVI +AHR+ T+ D ++VLD+GK++E S +LL
Sbjct: 655 ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-63
Identities = 85/229 (37%), Positives = 134/229 (58%), Gaps = 2/229 (0%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G+IE EN+ Y+ P VLK I + + + +VG TG+GK+TLI L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK-CHLA 1336
ILIDG+DI I + LRS + ++ QD LF GT+ N+ ++ E K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1337 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1396
+ + + D + E+G N S G+RQL+ +AR +L+ +IL+LDEAT++IDT T+ +IQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1397 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
+ + + T I +AHR+ T+ + D +LVLD+GK++E + +LL
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 3e-60
Identities = 182/675 (26%), Positives = 314/675 (46%), Gaps = 70/675 (10%)
Query: 202 STFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTD 261
S A LSK+ F W + ++G QKLEL I IP ++A++ S LE ++
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS 63
Query: 262 ATSLPQVIIHAVWKSLALNAAFAGV----NTIASYIGPFLITNFVSFLSGKHDHS---SY 314
A P+ +++A+ + F G+ + P L+ ++ + +Y
Sbjct: 64 AKKNPK-LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAY 122
Query: 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSS 371
+ L L +F+ V +L FG + +G+++R AL LIYK+++ + S+
Sbjct: 123 YLALGLCLLFI----VRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIST 178
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
G ++++++ ++ + + H +W+ P+QV L L+ L L F L I + +
Sbjct: 179 GQLVSLLSNNLNKFDEGLALAHFVWIAPLQVIL-LMGLIWELLEVNGFCGLGFLILLALF 237
Query: 432 NTPLAN-----RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI 486
L R +R I E R+ TSE +++++ +K WE+ K + +R+
Sbjct: 238 QACLGQKMMPYRDKR-AGKISE----RLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQD 292
Query: 487 ERDSLKK--YLYTCSAIAFLFWASPTLVSVI---TFGVCILLKTPLTSGAVLSALATFRI 541
E +K YL + AF F + + I+L+ T+ + L
Sbjct: 293 ELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVT 352
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEA------ 595
Q P I + ++ +IQ+F+ ++ K T+ ++ +++ A
Sbjct: 353 RQ-----FPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEM-VNVTASWDEGI 406
Query: 596 GEYAWDAREENFKKPTIKLTDKM------------------KIMKGSKVAVCGSVGSGKS 637
GE ++ N + D + K+ KG +AV GS GSGKS
Sbjct: 407 GELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466
Query: 638 SLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697
SLL I+GE+ G IK G+ ++ PQ+SWI GTI++NI+FG + Y V++ C
Sbjct: 467 SLLMMIMGELEPSEGK-IKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKAC 525
Query: 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757
L +DI ++ + D +V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF+ +D T
Sbjct: 526 QLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585
Query: 758 HLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ------- 810
+F+ CL L+S KT + T +LE L AD +L++ +G G + +L A +
Sbjct: 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL 645
Query: 811 -NSELVRQMKAHRKS 824
E A R++
Sbjct: 646 LGLEAFDNFSAERRN 660
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-59
Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 41/212 (19%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE +N+ Y VLK ++ T +K+ +VG +GSGKSTL++ L R+ +P+ G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1339
IDGVD+ + L+ LR ++ +PQDP LF GT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1340 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1399
S GQRQ + +AR LL+ IL+LDEAT+++D T+ +I + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1400 REETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1431
R TVI +AHR+ T+ D D ++VLD+G+
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 4e-57
Identities = 86/230 (37%), Positives = 136/230 (59%), Gaps = 6/230 (2%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE EN+ Y+P P VLK ++ T P KK+ +VG +GSGKST+++ LFR + S G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLA 1336
IDG DI + L LR + ++PQD +LF T+ N+ P +D+E+ E +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 1337 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1396
+ + + D V E G S G++Q V +AR +LK IL+LDEAT+++DT T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1397 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1446
+R+ + T I +AHR+ T+++ D ++VL +G+++E + +LL
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 3e-56
Identities = 139/554 (25%), Positives = 243/554 (43%), Gaps = 29/554 (5%)
Query: 275 KSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLT 334
K L L ++ + S + P LI + L L+L + L + +L
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLG-ELLELLLLLLLLALLGGVLRALQ 72
Query: 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIH 393
+I +R L + + ++ F SG +I+ + DVE + + +
Sbjct: 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLS-FFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
Query: 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR 453
++ + + +LV+L+ +L A L + + + LA + + + EA
Sbjct: 132 LVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 454 IKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAFLFWASP-TL 511
E+L +RV+K E LK+ E+ R +L+ + S
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 512 VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571
V V+ G ++L LT GA+ + + L PI L E++S++ + + R+ E +
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGS 631
E+ + + +P K + +I+ E +++ ++ K + I G KVA+ G
Sbjct: 311 EEPEVEDPPDPL-KDTIGSIEFENVSFSYPGKKPVLKDISFS------IEPGEKVAIVGP 363
Query: 632 VGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIREN 678
GSGKS+L+ +L SG I + G V Q + +GTIREN
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGE-ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 679 ILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
I G+ D EE L+ ++ I DG ++VGERG+NLSGGQ+QR+ +ARA+
Sbjct: 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
N + I D+ SA+D T + L LL +T L H+L + AD ++V+ +G+I
Sbjct: 483 NPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541
Query: 798 EQSGKYEDLIADQN 811
+ G +E+L+A
Sbjct: 542 VERGTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 3e-52
Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 1/227 (0%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E +N+ +Y P VL+ I+ P + + +VG +GSGKSTL+ + R + GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEI 1338
IDG D+ L LR ++ ++ QD LF TV N+ + +E+ E + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1339 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398
+ + D + E G S GQRQ + +AR LLK IL+LDEAT+++DT ++ ++Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1399 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
+ T +AHR+ T+ + D ++VL++GK++E + +LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-52
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 6/264 (2%)
Query: 1199 SEAPLVIKNSRPSPE--WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1256
E+P+ S E +I LENL +Y P L + T + +VG +
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQLTALVGAS 356
Query: 1257 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1316
G+GKSTL+ L + P+ G I ++G+D+ + + R ++S + Q+P LF GT+R N+
Sbjct: 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416
Query: 1317 PLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
SD+EI +++ L E V + L D + E G S GQ Q + LAR LL
Sbjct: 417 LARPDASDEEIIAALDQAGLLEFVPKPDGL-DTVIGEGGAGLSGGQAQRLALARALLSPA 475
Query: 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1435
+L+LDE TA +D T+ +I Q ++E + TV+ + HR+ D D ++VLD G+++E
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535
Query: 1436 DSPRQLLEDNSSSFSKLVAEFLRR 1459
+ +L E ++ L+ + R
Sbjct: 536 GTHEELSEKQ-GLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 7e-52
Identities = 96/254 (37%), Positives = 150/254 (59%), Gaps = 7/254 (2%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G++ +++L +Y VL+ I+ + +++G++GRTGSGKSTL+ A R++ + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1337
I IDGV + + LQ R +IPQ +F GT R NLDP + SD+EIW+V + L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
++ Q LD + + G S G +QL+CLAR +L K +IL+LDE +A +D T VI++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1398 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS------SSFSK 1451
T+++ + CTVI HRI +++ LV++E KV +YDS ++LL + S S +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239
Query: 1452 LVAEFLRRTSKSNR 1465
L R +SKS R
Sbjct: 240 LKLFPRRNSSKSKR 253
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 6e-51
Identities = 130/530 (24%), Positives = 235/530 (44%), Gaps = 44/530 (8%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
+IG+ + L G SF LL+ ++ K + + + M + P+SFFD P+ +L+
Sbjct: 60 VIGLAV-LRGICSFV---STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLS 115
Query: 989 RCSTDQSTV---DTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQV 1045
R + D V TD L +I L +++ S WQ+ + +V+L +
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS---WQLTLIVVVMLPVLSI--- 169
Query: 1046 VNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE----NRFL 1101
L R +++ + + E++ G ++ F + RF
Sbjct: 170 ---------LMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFD 220
Query: 1102 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAA 1161
S+ +T L+ + A L +++ + L ++ AG
Sbjct: 221 AVSNRNRRLAMKMT----SAGSISSPITQLIASLA--LAVVLFIALFQAQAGSLTAGDFT 274
Query: 1162 TYGLNLNVLQAWVIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSS 1217
+ + L + +L NV M + E + + P E +R +
Sbjct: 275 AFITAMIALIR-PLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIER--AR 328
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G +E N+ +Y L I+ + + +VGR+GSGKSTL+ + R EP G+
Sbjct: 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHL 1335
IL+DG D++ L LR +++++ QD +LF T+ N+ EQ EI + +
Sbjct: 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYA 448
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
+ V + LD P+ E+G S GQRQ + +AR LLK IL+LDEAT+++D ++ ++
Sbjct: 449 QDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508
Query: 1396 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
Q + T + +AHR+ T+ D ++V+D+G+++E + +LL N
Sbjct: 509 QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN 558
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 7e-51
Identities = 136/463 (29%), Positives = 211/463 (45%), Gaps = 57/463 (12%)
Query: 1005 LAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTAR 1064
L L FAL+ LL I I+ W +IL + LLQ A
Sbjct: 267 LIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGL------------LLQRPLSRLAE 314
Query: 1065 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL---LRSHSLIDDYSCVTFHNCGT 1121
E R R A ES++G TI+ N E RF ++ + +
Sbjct: 315 ESMRESAQRNA----VLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG--------- 361
Query: 1122 MEWLCLRI--NLLFNFAFFL-----VLIILVTLPR-SAIDPSLAGLAATYGLNLNVLQ-- 1171
L R NL NFA F+ V I++V + S + ++ GL A L+ L
Sbjct: 362 ---LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPL 418
Query: 1172 ---AWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLV 1227
A ++ + + S++ ++Q +P E P P G+IE N+
Sbjct: 419 GQLAGLLTRYQQAKTALQSLDELMQ---LPVERP----EGTRFLHRPRLQGEIEFRNVSF 471
Query: 1228 QYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1286
Y L ++ T PGEK + ++GR GSGKSTL++ L + +P+ G +L+DGVDI
Sbjct: 472 AYPGQETPALDNVSLTIRPGEK-VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530
Query: 1287 MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQDQRL 1345
I DLR + +PQDP LF GT+R N+ + D+EI + E VR+
Sbjct: 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDG 590
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1405
LD + E G + S GQRQ V LAR LL+ IL+LDE T+++D ++ + ++ +
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1406 CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447
T++ V HR +++D D ++V+D G+++ Q+LE
Sbjct: 651 KTLVLVTHR-TSLLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 1e-50
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 7/219 (3%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
G+IE N+ Y L ++ T GEK + ++GR GSGKSTL++ L + +P+ G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEK-VAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKC 1333
+L+DG DI + DLR + +PQD LF GT+R N+ PL D+ I
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELA 117
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
+ + V + LD + E G S GQRQ V LAR LL IL+LDE T+++D ++
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432
+++ +R+ T+I + HR + D ++V+D G++
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 3e-49
Identities = 149/540 (27%), Positives = 251/540 (46%), Gaps = 68/540 (12%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
L ++ L ++ +++L A+ Q+L +++ + R P+S FD+ P ++++
Sbjct: 67 LAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLIS 126
Query: 989 RCSTDQSTVD----TDIP--YRLAGLAFA-LIQLLSIIILMSQAAWQVFPLFLVILGISI 1041
R + D + T + R A L A L+ + S+ M+ A +FP LV++ I
Sbjct: 127 RVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVI-- 184
Query: 1042 WYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE---- 1097
YQ +T + R V A I F+E I G + I+ F Q+
Sbjct: 185 -YQRYSTP----------------IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFG 227
Query: 1098 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLA 1157
R S S H M+ L L LL +IL L L
Sbjct: 228 ERMGEASRS----------HYMARMQTLRLDGFLLRPLLSLFSALILCGLLM------LF 271
Query: 1158 GLAATYGLNLNVLQAWVIWNLCNVENKMISV--------------ERILQFTNIPSEAPL 1203
G +A+ + + VL A++ + L + +I + ER+ + + P +
Sbjct: 272 GFSASGTIEVGVLYAFISY-LGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ-- 328
Query: 1204 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1263
+ RP SG+I+++N+ Y VL+ I + P + +VG TGSGKSTL
Sbjct: 329 YGNDDRPL----QSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTL 383
Query: 1264 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1323
L + G I +DG +S + LR ++++ QDP++ T N+ S+
Sbjct: 384 ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISE 443
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+++W+ + LAE+ R L P+ E G N SVGQ+QL+ LARVL++ +IL+LDEA
Sbjct: 444 EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEA 503
Query: 1384 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
TA+ID+ T+ IQQ + T++ +AHR+ T+++ D +LVL G+ +E + +QLL
Sbjct: 504 TANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-48
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 1/189 (0%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+KI KG +A+ GS GSGK+SLL ILGE+ G IK G+ ++ Q SWI GTI+E
Sbjct: 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK-IKHSGRISFSSQFSWIMPGTIKE 116
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NI+FG + Y+ V++ C L +DI + + D +V+GE GI LSGGQ+ RI LARAVY
Sbjct: 117 NIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++ +G
Sbjct: 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236
Query: 798 EQSGKYEDL 806
G + +L
Sbjct: 237 YFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-46
Identities = 84/241 (34%), Positives = 143/241 (59%), Gaps = 13/241 (5%)
Query: 1220 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
IE +N+ +Y P+ P +LKG++ T P K + +VG +G GKST++ L R +P+ G
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-----DPLEQHSDQEIWEVINK 1332
IL+DGVDI + L+ LRS++ ++ Q+P+LF GT+ N+ D +D+E+ E K
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA----TDEEVEEAAKK 115
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
++ + + D V E G S GQ+Q + +AR LL+ +IL+LDEAT+++D ++
Sbjct: 116 ANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1393 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452
++Q+ + T I +AHR+ T+ + DL+ VL G+V+E + +L+ ++KL
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKL 234
Query: 1453 V 1453
V
Sbjct: 235 V 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 24/199 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------------------- 658
++I G + G VG GKSSLL +ILGE+ + G KVH
Sbjct: 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG---KVHWSNKNESEPSFEATRSRNR 78
Query: 659 GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
AY Q W+ T+ ENI FG + Y+ V + C+L DI++ GD + +GERG
Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYT 776
INLSGGQ+QRI +ARA+Y N+++ DDPFSA+D H HL ++ ++ L ++T++
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 777 THQLEFLDAADLVLVMKDG 795
TH+L++L AD ++ MKDG
Sbjct: 199 THKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 3e-43
Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 2/228 (0%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
G + N+ Y+P P +L GI+ T P K + +VG +G+GKST+++ LFR + +
Sbjct: 259 RLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCH 1334
G I IDG DI + Q LR + I+PQD +LF T+ N+ + +E+
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ 377
Query: 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
+ + ++ D V E G S G++Q V +AR +LK IL+LDEAT+++DT T+
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 1395 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1442
IQ +RE ++ T + +AHR+ T+ID D ++VLD G+++E + +LL
Sbjct: 438 IQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-43
Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 7/231 (3%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
I E++ +Y P P++L I+ PGE +G+VGR+GSGKSTL + + R P GR+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEV-VGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA-- 1336
L+DG D+++ LR ++ ++ Q+ +LF ++R N+ + E VI LA
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME--RVIEAAKLAGA 117
Query: 1337 -EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
+ + + D V E G S GQRQ + +AR L+ RIL+ DEAT+++D +++ I
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 1396 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1446
+ + + + TVI +AHR+ TV + D ++V+++G+++E S +LL +N
Sbjct: 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 7e-42
Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 10/263 (3%)
Query: 1187 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK-IELENLLVQYNPTLPMVLKGITCTF- 1244
S R+ +I + P V + P + ++G+ +EL N+ Y LK T
Sbjct: 309 SARRL---NDILDQKPEV---TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLA 362
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1304
GEK + ++GR+GSGKSTL+Q L +P G I ++GV+I+ + Q LR +S++ Q
Sbjct: 363 QGEK-VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421
Query: 1305 MLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
LF GT+R NL SD+E+W + + L +++ L+ + E G S G+R+
Sbjct: 422 HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDL 1423
+ LAR LL + +LDE T +D T+ + + E T++ V HR+ + D
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541
Query: 1424 VLVLDEGKVLEYDSPRQLLEDNS 1446
++VLD GK++E + +LL +N
Sbjct: 542 IIVLDNGKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 9e-42
Identities = 132/528 (25%), Positives = 227/528 (42%), Gaps = 60/528 (11%)
Query: 316 YGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSG 372
GL+LA++F R + +G R+ L+ ++ + + F S G
Sbjct: 198 IGLLLAALFEALLR----LLRTYLI--AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVG 251
Query: 373 IIINMINVDVERIGDFFL--YIHRIWLLPVQVFLALVILYKN---LGAAPAFAALFSTIF 427
II+ + ++E+I +F + I L + V+ + A L I
Sbjct: 252 EIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL-LRLREI 486
++ L + + ++E + ET+K + +K L+ E F + RL +
Sbjct: 311 LIFQP-LLRRKTRK----LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365
Query: 487 ERDSLKK-YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ-- 543
K L + V ++ FG ++L+ LT G +++ F +L
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVA----FNMLAGY 421
Query: 544 --EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
PI L +L + Q KV+L R+ + + E + + + GE ++
Sbjct: 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPP------EQEGDKTLIHLPKLQGEIEFE 475
Query: 602 A---REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658
R P ++ +I G KVA+ G GSGKS+LL +LG G I +
Sbjct: 476 NVSFRYGPDDPPVLEDLSL-EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR-ILLD 533
Query: 659 GKK-------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQD 702
G YV Q ++ +G+IRENI G ++ EE++E ++
Sbjct: 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEF 591
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
IE G + VGE G NLSGGQ+QR+ LARA+ S + + D+ SA+D T + Q
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQ 650
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
L+ +L +TV+ H+L + +AD ++V+ GKI + G +E+L+A
Sbjct: 651 NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 8e-41
Identities = 143/590 (24%), Positives = 249/590 (42%), Gaps = 79/590 (13%)
Query: 277 LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQR 336
AL A +G+ IA L + G+ S ++L + + L +R
Sbjct: 5 SALLAVLSGIAIIAQAA--LLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRER 62
Query: 337 QWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRI 395
Y A ++ +R + + K A A +G + +E++ ++ Y
Sbjct: 63 LGYRAAAKVRASLRQLVLDKLAKLGPA-FIAQKPAGSAATLALEGIEQLEPYYARY---- 117
Query: 396 WLLPVQVFLALVILYKNLGAAPA--FAALF----STIFVMVSNTPLANRQERFHSMI--- 446
LP Q+FL+ ++ P A+F + +++ PL MI
Sbjct: 118 --LP-QMFLSAIV--------PLLILIAIFFFNWAAALILLITAPLI-----PLFMILVG 161
Query: 447 MEAKDARIKATS----------ETLKSMRVLKLL----SWEQEFLKKLLRLREIERDSLK 492
+ AKDA K S + L+ + L+ + E+ K R+ L+
Sbjct: 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLR 221
Query: 493 KYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ----EPIYN 548
+ + + F + S LV+V G +L + LT A L L IL +P+ +
Sbjct: 222 IAFLSSAVLEFFAYLSIALVAV-YIGFRLLGEGDLTLFAGLFVL----ILAPEFFQPLRD 276
Query: 549 LPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK 608
L A + + ++ ++ E A++ I+I ++ +
Sbjct: 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPD---G 333
Query: 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------- 661
KP + + + I G A+ G+ G+GKS+LL+ +LG + G I+V+G
Sbjct: 334 KPALSDLN-LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE-IRVNGIDLRDLSPE 391
Query: 662 ------AYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
++V Q+ ++ GTIRENIL + D L+ L + + DG +V+
Sbjct: 392 AWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP-KPDGLDTVI 450
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GE G LSGGQ QR+ LARA+ S + + + D+P + +DA T + Q L L QKTVL
Sbjct: 451 GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVL 509
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS--ELVRQMKAHR 822
TH+LE AD ++V+ +G++ + G +E+L Q L++Q + R
Sbjct: 510 VITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-40
Identities = 77/219 (35%), Positives = 130/219 (59%), Gaps = 6/219 (2%)
Query: 1218 GKIELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
G ++ +N+ Y PT P +VL+ ++ T PGE +VG +GSGKST++ L +P
Sbjct: 10 GIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVT-ALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKC 1333
GG++L+DG IS + L S++S++ Q+P+LF +++ N+ L+ S + + E K
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
H + + D V E G S GQ+Q V +AR L++ ++L+LDEAT+++D ++
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432
+QQ + + R TV+ +AHR+ TV D +LVLD G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-40
Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 27/267 (10%)
Query: 1181 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1240
+E + ++ +L+ P + P SG +EL N+ Y+P P +++
Sbjct: 439 LEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENF 498
Query: 1241 TCTFPGEKKIGVVGRTGSGKST---LIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297
+ T +++ +VG +GSGKST L+ L++ P G IL DG+ I + L + +
Sbjct: 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSV 555
Query: 1298 SIIPQDPMLFQGTVRTNL---DP-------LEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1347
+++ QD LF+GTVR NL DP + D I +VI R D
Sbjct: 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITS-------RPGG--YD 606
Query: 1348 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCT 1407
A +AE G N S GQRQ + +AR L++ IL+LDEAT+++D T+ +I +R CT
Sbjct: 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRG--CT 664
Query: 1408 VITVAHRIPTVIDNDLVLVLDEGKVLE 1434
I VAHR+ T+ D D ++VL+ GKV++
Sbjct: 665 CIIVAHRLSTIRDCDEIIVLERGKVVQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 5e-40
Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 9/260 (3%)
Query: 1186 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFP 1245
I++ER+ N P+E + P G I EN+ +Y P P VL +
Sbjct: 426 IALERLGDILNSPTEPRSAGLAALPE----LRGAITFENIRFRYAPDSPEVLSNLNLDIK 481
Query: 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1305
+ IG+VG +GSGKSTL + L R+ P G++L+DGVD+++ LR ++ ++ Q+ +
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 1306 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLA---EIVRQDQRLLDAPVAEDGENWSVGQR 1362
LF ++R N+ + E VI+ LA + + + + + V E G N S GQR
Sbjct: 542 LFSRSIRDNIALCNPGAPFE--HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599
Query: 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDND 1422
Q + +AR L+ RIL+ DEAT+++D ++ +I + +RE TVI +AHR+ TV D
Sbjct: 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD 659
Query: 1423 LVLVLDEGKVLEYDSPRQLL 1442
++VL++G++ E +LL
Sbjct: 660 RIIVLEKGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 6e-40
Identities = 86/252 (34%), Positives = 139/252 (55%), Gaps = 12/252 (4%)
Query: 1189 ERILQFTNIPSE--APLVIKNSRPSPEWPSSGKIELENLLVQYNPTLP--MVLKGITCTF 1244
ER+++ + AP K + P G+IE E + Y P P L G+ T
Sbjct: 309 ERLIELLQAEPDIKAPAHPK----TLPVPLRGEIEFEQVNFAY-PARPDQPALDGLNLTV 363
Query: 1245 -PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
PGE + +VG +G+GKSTL Q L R +P GRIL+DGVD+ + +LR+R++++PQD
Sbjct: 364 RPGET-VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQD 422
Query: 1304 PMLFQGTVRTNLDPLEQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362
P+LF +V N+ +D+E+ H E + D + E G S GQR
Sbjct: 423 PVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482
Query: 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDND 1422
Q + +AR +LK IL+LDEAT+++D ++ ++QQ + T + +AHR+ TV+ D
Sbjct: 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD 542
Query: 1423 LVLVLDEGKVLE 1434
++V+D+G+++
Sbjct: 543 RIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 3e-39
Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 7/232 (3%)
Query: 1199 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1258
AP + P P+ +E + V Y P L+ ++ T P +++ +VG +G+
Sbjct: 302 DAAPRPLAGKAPVTAAPAPS-LEFSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGA 359
Query: 1259 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--- 1315
GKSTL+ L V+P+ G I ++GV ++ R +++ +PQ P LF GT+ N+
Sbjct: 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLA 419
Query: 1316 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
P SD EI E + + L E V + LD P+ E G S GQ Q + LAR L+
Sbjct: 420 RP--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDA 477
Query: 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1427
+L+LDE TA +D T+ + + +R TV+ V HR+ D ++VL
Sbjct: 478 PLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-37
Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 12/318 (3%)
Query: 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV 323
SL + + A+ + F ++ + + P L+ FV FL D++++ GL L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDA--DNATWGRGLGLVLT 290
Query: 324 FLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGP--SSGIIINMI 378
+ ++S+ ++Y+ + R G++ RSAL LI+++ I A P ++G IINM+
Sbjct: 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMM 350
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG--AAPAFAALFSTIFVMVSNTPLA 436
+ DVERI F Y +W P+ + L++++L + +G A A A L T+ + N +
Sbjct: 351 STDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL---NGAIM 407
Query: 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
Q I +A DAR+KAT+E +R+ K ++WE F+ + R E L+
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
A +F+ A+PTL+ + F V LL LT V +A +L+ P + +P + + +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 557 AQTKVSLYRIQEFIKEDN 574
Q VS+ RI F++ DN
Sbjct: 528 LQFLVSIKRISTFLECDN 545
|
Length = 1560 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-36
Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 1217 SGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
G +E +++ Y+ + V + ++ PG+ + +VG TG+GKSTLI L RV +P
Sbjct: 332 KGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQT-VAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCH 1334
GRILIDG DI + LR ++++ QD LF ++ N+ +D+E+ +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1335 LAE-IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
+ I R+ D V E G S G+RQ + +AR LLK IL+LDEAT+++D T+
Sbjct: 450 AHDFIERKPDG-YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEA 508
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
++ + E T +AHR+ TV + D +LV D G+V+E S SF +LV
Sbjct: 509 KVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE-----------SGSFDELV 557
Query: 1454 A 1454
A
Sbjct: 558 A 558
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-35
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 42/214 (19%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+EN+ +Y P VL+ ++ + + + ++G +GSGKSTL + + ++ P+ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1339
+DG DIS +L + +PQD LF G++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1340 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1399
S GQRQ + LAR L RILVLDE + +D + + Q I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1400 REETSR-CTVITVAHRIPTVIDNDLVLVLDEGKV 1432
+ T I +AHR T+ D +LVL++G+V
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 7e-35
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
Query: 1186 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK--IELENLLVQYNPTLPMVLKGITCT 1243
+ ERI++ + S P+ GK +EL +L Y P P VL G++
Sbjct: 302 AAAERIVEVLDAAGPVAEG---SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLD 357
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
P +++ ++G +GSGKSTL+ L +++P G + +DGV +S + ++R R+S+ QD
Sbjct: 358 LPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD 417
Query: 1304 PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362
LF TVR NL +D+E+W + + LA+ +R LD + E G S G+R
Sbjct: 418 AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGER 477
Query: 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1414
Q + LAR LL IL+LDE T +D T + + + + S TV+ + H
Sbjct: 478 QRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-34
Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 1217 SGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
SG IE++ + +Y P P++L ++ PGE + +VG +GSGKSTL++ L P
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF-VAIVGPSGSGKSTLLRLLLGFETPES 507
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1335
G + DG D++ + +Q +R +L ++ Q+ L G++ N+ + E WE L
Sbjct: 508 GSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGL 567
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
AE +R + ++E G S GQRQ + +AR L++K RIL+ DEAT +A DN
Sbjct: 568 AEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT----SALDNRT 623
Query: 1396 QQTIREETSR--CTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
Q + E R T I +AHR+ T+ + D + VLD G+V++ + +L+ L
Sbjct: 624 QAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG-----LF 678
Query: 1454 AEFLRR 1459
A+ RR
Sbjct: 679 AQLARR 684
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 3e-34
Identities = 86/231 (37%), Positives = 139/231 (60%), Gaps = 8/231 (3%)
Query: 1218 GKIELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
G IE +++ Y P P VLKG+T T PGE + +VG +GSGKST+ L + +P+
Sbjct: 477 GLIEFQDVSFSY-PNRPDVPVLKGLTFTLHPGEV-VALVGPSGSGKSTVAALLQNLYQPT 534
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKC 1333
GG++L+DGV + L +++++ Q+P+LF G+VR N+ L D+EI
Sbjct: 535 GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAA 594
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
+ + + + D V E G S GQ+Q + +AR L++K R+L+LDEAT+++D +
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
++Q++ R SR TV+ +AHR+ TV D +LVL +G V+E + +QL+ED
Sbjct: 655 LLQES-RSRASR-TVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-34
Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 2/230 (0%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G IE N+ Y L+ I P K + +VGR+GSGKST+ L R + G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHL 1335
IL+DG D+ L LR++++++ Q+ LF T+ N+ EQ+S ++I E +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
+ + + LD + E+G S GQRQ + +AR LL+ IL+LDEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1396 QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
Q + E T + +AHR+ T+ D +LV+++G+++E + +LL N
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 6e-34
Identities = 67/249 (26%), Positives = 130/249 (52%), Gaps = 10/249 (4%)
Query: 1189 ERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEK 1248
E ++ F P P + IE E+L + +P + + T P +
Sbjct: 322 ESLVTFLETPLAHP---QQGEKELASNDPVTIEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1308
+I +VG +G+GK++L+ AL + P G + I+G+++ + + R LS + Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1309 GTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365
GT+R N+ +P SD+++ + + ++E + + LD P+ + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVL 1425
LAR LL+ ++L+LDE TAS+D ++ ++ Q + + R T + V H++ + D +
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1426 VLDEGKVLE 1434
V+ +G++++
Sbjct: 555 VMQDGQIVQ 563
|
Length = 588 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 20/209 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVP 665
I G KVA+ G GSGKS++L + G I I G I+ + VP
Sbjct: 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDSLRRAIGVVP 81
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLS 722
Q + + TI NI +G+ + EEV+E ++ I + DG ++VGERG+ LS
Sbjct: 82 QDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GG+KQR+ +ARA+ N + + D+ SA+D HT + L + +T + H+L
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLST 198
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ AD ++V+KDG+I + G +E+L+A
Sbjct: 199 IVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-33
Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 8/258 (3%)
Query: 1187 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPG 1246
S RI + T + P V + + + L N+ Y VLKG++
Sbjct: 310 SARRINEITE---QKPEVTFPTTSTAA-ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKA 365
Query: 1247 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1306
+K+ ++GRTG GKSTL+Q L R +P G IL++G I+ LR +S++ Q L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1307 FQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365
F T+R NL SD+ + EV+ + L +++ D+ L+A + E G S G+++ +
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGGEQRRL 484
Query: 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN-DLV 1424
+AR LL +L+LDE T +D T+ I + + E TV+ + HR+ T ++ D +
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL-TGLEQFDRI 543
Query: 1425 LVLDEGKVLEYDSPRQLL 1442
V+D G+++E + ++LL
Sbjct: 544 CVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-33
Identities = 134/536 (25%), Positives = 229/536 (42%), Gaps = 57/536 (10%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
LI +I + LL + + + + L+ I +F P+SFF + + I++
Sbjct: 202 LIIAYII----QQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA-AWQVFPLFLVILGISIWYQVVN 1047
R + S +D LA +L + I++++ Q LFL+ L Y V+
Sbjct: 258 RFTDASSIIDA-----LASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVII 312
Query: 1048 TARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSL 1107
+ T +L A + E + G TI+ E + S
Sbjct: 313 IL---------FKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSE 363
Query: 1108 IDDYSCVTFHNCGT---MEWLCLRINLLFN-----FAFFLVLIILVTLPRSAIDPSLAGL 1159
DY +F + + L+ N +LV+ +TL + L
Sbjct: 364 FGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQ------LITF 417
Query: 1160 AATYGLNLNVLQAWVIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWP 1215
A L L+ N+ N++ K+ ++ R+ + + SE N + E
Sbjct: 418 NALLSYFLTPLE-----NIINLQPKLQAARVANNRLNEVYLVDSE----FINKKKRTELN 468
Query: 1216 SS-GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
+ G I + ++ Y +L I+ T K +VG +GSGKSTL + L +
Sbjct: 469 NLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINK 1332
G IL++G + I LR ++ +PQ+P +F G++ NL E S EIW
Sbjct: 528 SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAA--- 584
Query: 1333 CHLAEI---VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
C +AEI + ++E+G + S GQ+Q + LAR LL ++L+LDE+T+++DT
Sbjct: 585 CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 1390 ATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
T+ I + + T+I VAHR+ +D ++VLD GK++E S +LL+ N
Sbjct: 645 ITEKKIVNNLLNLQDK-TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 6e-33
Identities = 61/192 (31%), Positives = 86/192 (44%), Gaps = 56/192 (29%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I G KVA+ G GSGKS+LL +L GEI I G ++ + AYV
Sbjct: 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIAYV 81
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
PQ ++ +GTIRENIL SGG
Sbjct: 82 PQDPFLFSGTIRENIL-----------------------------------------SGG 100
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784
Q+QRI +ARA+ + + I D+ SA+D T L + L L KTV+ H+L +
Sbjct: 101 QRQRIAIARALLRDPPILILDEATSALDPET-EALILEALRALAKGKTVIVIAHRLSTIR 159
Query: 785 AADLVLVMKDGK 796
AD ++V+ DG+
Sbjct: 160 DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-32
Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
Query: 1212 PEWPS-SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270
PE P+ G +E ++ ++ + ++ + + +VG TG+GK+TLI L RV
Sbjct: 326 PELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384
Query: 1271 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEV 1329
+P+ G+ILIDG+DI+ + + LR ++ + QD LF ++R N+ E +D+E++E
Sbjct: 385 YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEA 444
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+ + + D V E G S G+RQ + +AR +LK ILVLDEAT+++D
Sbjct: 445 AKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDV 504
Query: 1390 ATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449
T+ ++ I T +AHR+ TV + DLVL LD+G+++E S ++L++ + F
Sbjct: 505 ETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRF 563
Query: 1450 SKLV 1453
KL+
Sbjct: 564 YKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-32
Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 15/216 (6%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKKAYVPQSSWI-QT- 672
+ G ++A+ G G+GK+SLL+++LG +P +I+G ++ +++ SW+ Q
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNP 432
Query: 673 ----GTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
GT+R+N+L G D ++ LE +++ + + G + +G++ LS GQ Q
Sbjct: 433 QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD 787
R+ LARA+ + + D+P +++DAH+ L Q L ++T L THQLE L D
Sbjct: 493 RLALARALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551
Query: 788 LVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRK 823
+ VM+DG+I Q G Y +L L + AHR+
Sbjct: 552 QIWVMQDGQIVQQGDYAELSQAGG--LFATLLAHRQ 585
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 8e-32
Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 21/217 (9%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK---- 656
KKP +K + I G VA+ G G+GK++L++ ++ G+I I G I+
Sbjct: 15 KKPVLKDIN-FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISR 72
Query: 657 --VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDL 711
+ V Q +++ +GTI ENI G+ EEV+E + I +G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGAHDFIMKLPNGYD 130
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+V+GE G NLS G++Q + +ARA+ + + I D+ S +D T L ++ L L+ +
Sbjct: 131 TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK-LIQEALEKLMKGR 189
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
T + H+L + AD +LV+ DGKI + G +++L+A
Sbjct: 190 TSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 17/236 (7%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE ENL +Y LK ++ +++ ++G GSGKSTL++ L +++P+ G +L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1280 IDGVDISMI-GLQDLRSRLSIIPQDP--MLFQGTVRTNLD---PLEQHSDQEIWEVINKC 1333
+DG+D S L +LR ++ ++ Q+P LF TV + +EI E + +
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE- 121
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
E+V + LLD P N S GQ+Q V +A VL IL+LDE TA +D
Sbjct: 122 -ALELVGL-EELLDRPPF----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 1394 VIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446
+ + +++ E T+I V H + V++ D V+VLD+GK+L P ++ D
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 8e-31
Identities = 136/515 (26%), Positives = 225/515 (43%), Gaps = 63/515 (12%)
Query: 317 GLVLASVF-LFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG--PSSGI 373
G+ LA VF KT+ S YF + G + L+ +++R + ++ S G
Sbjct: 192 GVALAIVFDFVLKTLRS------YF-LDVAGKKADLILSAKLFERVLGLRMEARPASVGS 244
Query: 374 IINMINVDVERIGDFF--LYIHRIWLLPVQVFLALVILY---KNLGAAPAFAALFSTIFV 428
N + + E + DFF + + LP L L+++ L P A +
Sbjct: 245 FANQLR-EFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLVAIPLILLPG 302
Query: 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIE 487
++ PL+ E M R E+L + +K L+ E F ++ + + +
Sbjct: 303 LLLQRPLSRLAEE----SMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALA 358
Query: 488 RDSLKKYLYTCSAIAFLFWASPTLVSV--ITFGVCILLKTPLTSGAVLSA--LATFRILQ 543
R LK + A F + LVSV + GV ++ LT G +++ L+ R L
Sbjct: 359 RSGLKSRFLSNLATNFAQFIQ-QLVSVAIVVVGVYLISDGELTMGGLIACVMLSG-RALA 416
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR 603
P+ L L++ Q K +L + E ++ P+ P + GE + R
Sbjct: 417 -PLGQLAGLLTRYQQAKTALQSLDELMQ-----LPVERPEGTRF-LHRPRLQGEI--EFR 467
Query: 604 EENF-----KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658
+F + P + + I G KVA+ G +GSGKS+LL +LG G+ + +
Sbjct: 468 NVSFAYPGQETPALD-NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLD 525
Query: 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL---EGCALNQD 702
G YVPQ + GT+R+NI G + EE+L E + +
Sbjct: 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG--APYADDEEILRAAELAGVTEF 583
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
+ DG +GERG +LSGGQ+Q + LARA+ + + + D+P SA+D + FK
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER-FKD 642
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
L L+ KT++ TH+ LD D ++VM +G+I
Sbjct: 643 RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-30
Identities = 125/621 (20%), Positives = 235/621 (37%), Gaps = 117/621 (18%)
Query: 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG--------KHDHSSY 314
LP + ++ K L + T+ + IG LSG +
Sbjct: 3 ALLPYLRLYKRHKFGLLLGIVLAILTLLASIGLL-------TLSGWFISASAIAGLAYIF 55
Query: 315 HYGLVLASVFLFAKT------VESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG 368
+ L A V A VE L F RV SAL V ++++ + A
Sbjct: 56 NVMLPSAGVRGLAILRTAARYVERLVSHDATF-------RVLSALRVRLFEKLEPLSPAL 108
Query: 369 PS---SGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPA---FAAL 422
SG ++N + DV+ + + +L + ++ + + + I A L
Sbjct: 109 LLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168
Query: 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKS--------MRVLKLLSWEQ 474
+ ++ P R A + L+S L + E
Sbjct: 169 LLLLLII----PTLFY--RAG----RKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAED 218
Query: 475 EFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI------LLKTPL 527
+ L + K+ +T + A L + LV + + L +
Sbjct: 219 AYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGA 278
Query: 528 TSG--AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK 585
+ +AL F L P + Q S R+ + + QK +T P +
Sbjct: 279 ALALLVIFAALEAFEPL------APGAFQHLGQVIASARRLNDILD---QKPEVTFPDEQ 329
Query: 586 ASDVAIDIEAGEYAWDAREENFKKPTIK---LTD-KMKIMKGSKVAVCGSVGSGKSSLLS 641
+ +E R +F P + L + + + +G KVA+ G GSGKS+LL
Sbjct: 330 TATTGQALEL-------RNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382
Query: 642 SILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIRENILFGK----- 683
+ G G+ I ++G + + + Q + +GT+R+N+
Sbjct: 383 LLAGAWDPQQGS-ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD 441
Query: 684 -DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742
++ L+ L + +E DG + +GE G LSGG+++R+ LARA+ ++ ++
Sbjct: 442 EELW-----AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Query: 743 IFDDPFSAVDAHTGTHLFKQCLMGLLSQ----KTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ D+P +D T ++ ++ LL + KT+L TH+L L+ D ++V+ +GKI
Sbjct: 497 LLDEPTEGLDPIT-----ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKII 551
Query: 799 QSGKYEDLIADQNSELVRQMK 819
+ G + +L+A+ +++
Sbjct: 552 EEGTHAELLANN--GRYKRLY 570
|
Length = 573 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-30
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ NL +Y L G++ + G++G G+GK+TL++ L +++P+ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1335
+ G D+ +R R+ +PQ+P L+ TVR NL+ L S +E E I L
Sbjct: 64 VLGYDVV-KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE--EL 120
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
E+ + + + V S G +Q + +A LL +L+LDE T+ +D + I
Sbjct: 121 LELFGLEDK-ANKKV----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 1396 QQTIREETSR--CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLE 1443
+ +RE T++ H + + D V++L++GK++ +P +L E
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PS 1274
IEL +L V Y LK I+ P + ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1275 GGRILIDGVDISMIGLQD--LRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVIN 1331
G +L+DG DI + + LR R+ ++ Q P F G++ N+ L H +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLH------GIKL 112
Query: 1332 KCHLAEIVRQDQRL--LDAPVAE--DGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
K L E V + R L V + S GQ+Q +CLAR L + +L+LDE T+++
Sbjct: 113 KEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 1388 DTATDNVIQQTIREETSRCTVITVAH------RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1441
D + I++ I E T++ V H R+ D L G+++E+ Q+
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 22/208 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG-------------KKA 662
I G VA+ G GSGKS+L++ I PR + I + G +
Sbjct: 24 DIPAGETVALVGPSGSGKSTLVNLI----PRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 663 YVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q ++ T+ ENI +G+ + EE ++ I +G +V+GERG+ L
Sbjct: 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQ+QRI +ARA+ + + I D+ SA+D + L + L L+ +T H+L
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQAALERLMKNRTTFVIAHRLS 198
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIAD 809
++ AD ++V++DGKI + G +E+L+A
Sbjct: 199 TIENADRIVVLEDGKIVERGTHEELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 8e-30
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 21/208 (10%)
Query: 606 NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIK--- 656
N + P + + I G KVA+ G VGSGKS+LL + G P + G I+
Sbjct: 14 NQEIPALDN-VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD 72
Query: 657 ---VHGKKAYVPQSSWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADG 709
+ YVPQ + GT+R+NI G D R E + + +G
Sbjct: 73 PADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDER---ILRAAELAGVTDFVNKHPNG 129
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+GERG LSGGQ+Q + LARA+ ++ + + D+P SA+D ++ L ++ L LL
Sbjct: 130 LDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLG 188
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKI 797
KT++ TH+ LD D ++VM G+I
Sbjct: 189 DKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 22/222 (9%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
EL+NL Y L I+ T + + +VG GSGKSTL++ L ++ P+ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRT-------NLDPLEQHSDQEIWEVIN 1331
DG D++ + L++LR ++ ++ Q+P F TV NL ++EI E +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL----GLPEEEIEERVE 116
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
+ E+V + L D S GQ+Q V +A VL IL+LDE TA +D A
Sbjct: 117 EA--LELVG-LEGLRDRSPFT----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 1392 DNVIQQTIRE-ETSRCTVITVAHRIPTVIDN-DLVLVLDEGK 1431
+ + +++ + T+I V H + +++ D V+VL++GK
Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 22/242 (9%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+IE + V Y+ +LK I+ F G +VG +G+GKSTLI+ + R+++P+ G I
Sbjct: 3 EIEFKE--VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PL---EQHSDQEIWEVINKC 1333
LIDGVDI I + DLR ++ ++ Q P LF+GTV+ N++ P+ E++ D E +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY------ 114
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
IV ++ V +N S G+ Q V +AR L +L+LDE T+++D +
Sbjct: 115 --LSIVGLNKEYATRDV----KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 1394 VIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450
+I++ I + ++ TVI + H + D L++G ++EY + + +
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228
Query: 1451 KL 1452
KL
Sbjct: 229 KL 230
|
Length = 241 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-29
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 20/207 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I G VA+ GS G GKS+++S + GEI + G I+ + + V
Sbjct: 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRWLRSQIGLV 82
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINL 721
Q + GTI ENI +GK EEV E N I DG ++VGERG L
Sbjct: 83 SQEPVLFDGTIAENIRYGKPDATD--EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQKQRI +ARA+ N + + D+ SA+DA + L ++ L + +T + H+L
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAES-EKLVQEALDRAMKGRTTIVIAHRLS 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ ADL+ V+++G++ + G +++L+A
Sbjct: 200 TIRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 8e-29
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 39/215 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ + N+ Y VLK ++ +KI ++GR+GSGKSTL+Q L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1339
+DGV +S + L S +S++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1340 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1399
G +S G+RQ + LAR+LL+ I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1400 REETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
E T+I + H + + D +L L+ GK++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 32/240 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+ENL Y +L ++ + P + G++G GSGKSTL++ L +++P G +L
Sbjct: 3 LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVR--------TNLDPLEQHSDQEIWEVI 1330
+DG DI+ + ++L +L+ +PQ P G TV +L + S ++ V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L + R +D S G+RQ V +AR L ++ IL+LDE T+ +D A
Sbjct: 121 EALELLGLEHLADRPVDE--------LSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN------DLVLVLDEGKVLEYDSPRQLL 1442
+ + +R+ TV+ V H + N D +++L +GK++ +P ++L
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDL-----NLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 16/184 (8%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSW 669
G +VA+ G G+GKS+LL+ +LG + G+ I V+G A+VPQ +
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 670 IQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
+ GTI ENI + D + E LE L++ + G + +GE G LSGGQ QR
Sbjct: 407 LFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQR 466
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADL 788
+ LARA ++ + + D+P + +DA T + + L L +TVL TH+L AD
Sbjct: 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLALAALADR 525
Query: 789 VLVM 792
++V+
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKKAY------VP 665
I G KV + G GSGKSSLL ++ G I I G I G +P
Sbjct: 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLHDLRSRISIIP 84
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINL 721
Q + +GTIR N+ D + +E LE L + +E G +VV E G NL
Sbjct: 85 QDPVLFSGTIRSNL----DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
S GQ+Q + LARA+ S + + D+ ++VD T L ++ + TVL H+L+
Sbjct: 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREAFKDCTVLTIAHRLD 199
Query: 782 FLDAADLVLVMKDGKI 797
+ +D +LV+ G++
Sbjct: 200 TIIDSDRILVLDKGRV 215
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IEL L + VLKG+ + + ++G +GSGKSTL++ + ++ P G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1280 IDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIWEVIN 1331
IDG DI S L LR R+ ++ Q LF TV N+ PL +H S++EI E++
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1332 KCHLAEI-VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
+ L + +R + L A S G ++ V LAR L +L+ DE TA +D
Sbjct: 119 EK-LEAVGLRGAEDLYPA-------ELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
VI IR + T I V H + T D + VL +GK++ +P +L
Sbjct: 171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-26
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%)
Query: 1210 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1269
P+P+ G + +E L +LKGI+ + +G++G +GSGKSTL + L
Sbjct: 329 PAPQ----GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384
Query: 1270 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1329
+ P+ G + +DG D+ + L + +PQD LF GT+ N+ + +D E +V
Sbjct: 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPE--KV 442
Query: 1330 INKCHLAE----IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
I LA I+R Q D + E G S GQRQ + LAR L ++VLDE +
Sbjct: 443 IEAARLAGVHELILRLPQGY-DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 1386 SIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLL 1442
++D+ + + I +R TV+ +AHR P+ + + D +LVL +G++ + ++L
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHR-PSALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-26
Identities = 63/213 (29%), Positives = 93/213 (43%), Gaps = 58/213 (27%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
E+ENL +Y L ++ T + + +VG GSGKSTL++A+ +++P+ G ILI
Sbjct: 1 EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1340
DG DI+ + L++LR R+ + Q
Sbjct: 59 DGKDIAKLPLEELRRRIG------YVPQ-------------------------------- 80
Query: 1341 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400
L S GQRQ V LAR LL +L+LDE T+ +D A+ + + +R
Sbjct: 81 -----L-----------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1401 EETSR-CTVITVAHRIPTVID-NDLVLVLDEGK 1431
E TVI V H D V+VL +GK
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-26
Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 22/232 (9%)
Query: 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
IELEN+ + T L ++ P + G++G +G+GKSTL++ + + P+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1277 RILIDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLE--QHSDQEIWEV 1329
+ +DG D+ S L+ LR ++ +I Q L TV N+ PLE EI +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+ L E+V + P S GQ+Q V +AR L +IL+ DEAT+++D
Sbjct: 122 VA--ELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1390 ATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDS 1437
T I + +++ T++ + H + V+ D V VLD+G+++E +
Sbjct: 175 ETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-26
Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 26/262 (9%)
Query: 565 RIQEFIKEDNQKKPITEPTSKASDV--AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMK 622
R+ E ++ + K P + + I+ E +A+ AR + + LT +
Sbjct: 310 RLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLT----VRP 365
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQSSW 669
G VA+ G G+GKS+L +L G I + G ++ + + A VPQ
Sbjct: 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-LLDGVDLRQLDPAELRARMALVPQDPV 424
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMWADGDLSVVGERGINLSGGQK 726
+ ++ ENI +G+ + EEV I +G + +GERG+ LSGGQ+
Sbjct: 425 LFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QRI +ARA+ ++ + + D+ SA+DA + L +Q L L+ +T L H+L + A
Sbjct: 483 QRIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 787 DLVLVMKDGKIEQSGKYEDLIA 808
D ++VM G+I G + +LIA
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 28/235 (11%)
Query: 1220 IELENLLVQY--NPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
+E++NL V + L ++ + GE +G+VG +GSGKSTL +A+ +++P+ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGET-LGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1277 RILIDGVDISMIG---LQDLRSRLSIIPQDPM-----LFQGTVRTNL-DPLEQH----SD 1323
I+ DG D+ + + R + ++ QDPM T+ + +PL H
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM--TIGEQIAEPLRIHGKLSKK 118
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+ E + L V + +L+ E S GQRQ V +AR L ++L+ DE
Sbjct: 119 EARKEAVLL--LLVGVGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEP 172
Query: 1384 TASIDTATDNVIQQTIREETSR--CTVITVAHRIPTV-IDNDLVLVLDEGKVLEY 1435
T+++D + I +++ T++ + H + V D V V+ GK++E
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 67/238 (28%), Positives = 123/238 (51%), Gaps = 26/238 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I++EN+ Y + LK ++ + + ++G GSGKST+ + L +++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVR---------TNLDPLEQHSDQEIWE 1328
IDG+ IS L+++R ++ II Q+P F G TV + P +++ +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP------KKMKD 121
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
+I+ LA+ V + L P +N S GQ+Q V +A VL I++ DE+T+ +D
Sbjct: 122 IID--DLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
I++ + + +T + T+I++ H + I D V+V EGK++ P+++L +
Sbjct: 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-25
Identities = 108/453 (23%), Positives = 194/453 (42%), Gaps = 74/453 (16%)
Query: 395 IWLLPVQVFLALVILYKN-------LGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIM 447
+W+L V + L ++ +N L + P +A +++ N+ + M
Sbjct: 280 MWIL---VIVGLFLVRQNMLLFLLSLLSIPVYAV------IIILFKRTFNKL---NHDAM 327
Query: 448 EAKDARIKATSETLKSMRVLKLLSWEQE-----------FLKKLLRLREIER-DSLKKYL 495
+A + E L + +K L+ E E +L K + ++ ++ K +
Sbjct: 328 QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387
Query: 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISM 555
+ W LV ++ LT G +++ A P+ N+ L
Sbjct: 388 TKLILNVVILWTGAYLV----------MRGKLTLGQLITFNALLSYFLTPLENIINLQPK 437
Query: 556 IAQTKVSLYRIQEFI---KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI 612
+ +V+ R+ E E KK TE + D+ I+ + Y + +
Sbjct: 438 LQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--------- 488
Query: 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKKA-- 662
L+D + I SK + G GSGKS+L ++ GEI ++G ++K +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-LLNGFSLKDIDRHTLR 547
Query: 663 ----YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ---DIEMWADGDLSVVG 715
Y+PQ +I +G+I EN+L G +E+ C + + DIE G + +
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
E G ++SGGQKQRI LARA+ ++S V I D+ S +D T + L L KT+++
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIF 664
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
H+L +D ++V+ GKI + G +++L+
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-25
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 9/249 (3%)
Query: 1199 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1258
+EAP+V S P PE + + Y T L+ + T + +G+ G TGS
Sbjct: 295 AEAPVVKDGSEPVPEGRGELDVNIRQF--TYPQTDHPALENVNFTLKPGQMLGICGPTGS 352
Query: 1259 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--- 1315
GKSTL+ + R + S G I + ++ + L RSRL+++ Q P LF TV N+
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 1316 DPLEQHSDQEIWEVINKCHLAE-IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1374
P + QEI V + + I+R Q D V E G S GQ+Q + +AR LL
Sbjct: 413 RP--DATQQEIEHVARLASVHDDILRLPQGY-DTEVGERGVMLSGGQKQRISIARALLLN 469
Query: 1375 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
IL+LD+A +++D T++ I +R+ TVI AHR+ + + +LV+ G + +
Sbjct: 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ 529
Query: 1435 YDSPRQLLE 1443
+ QL +
Sbjct: 530 RGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-25
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEI--PRISGAAIKVH---GKKAYVPQSSWI 670
G + +CG GSGKS+LLS I G+I I +++ + A V Q+ ++
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 671 QTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+ T+ NI G+ D Q E V +++ DI G + VGERG+ LSGGQKQRI
Sbjct: 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ N+++ I DD SAVD T H L +TV+ + H+L L A +
Sbjct: 461 SIARALLLNAEILILDDALSAVDGRT-EHQILHNLRQWGEGRTVIISAHRLSALTEASEI 519
Query: 790 LVMKDGKIEQSGKYEDLIADQN--SELVR--QMKAHRKSLDQVNPPQE 833
LVM+ G I Q G ++ L ++ R Q++A +LD +E
Sbjct: 520 LVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEA---ALDDAPEIRE 564
|
Length = 569 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-25
Identities = 105/416 (25%), Positives = 180/416 (43%), Gaps = 44/416 (10%)
Query: 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKAT---SETLKSMRVLKLLSWEQE 475
AL + V+V L NR + + EA +A I+A L++ V++ +
Sbjct: 145 ILALGGAV-VLVGLALLNNRATK--KPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201
Query: 476 FLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVL 533
K+ R + ++ L ++ V+ G + + +T G ++
Sbjct: 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMI 261
Query: 534 -SALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP---ITEPTSKASDV 589
++ R L PI + + + R+ E + + P + EP S
Sbjct: 262 AGSILVGRALA-PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVE 320
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP- 648
+ I KKPT++ + G +A+ G GSGKS+L I+G P
Sbjct: 321 NVTI---------VPPGGKKPTLRGIS-FSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 649 -----RISGAAIK-----VHGKK-AYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEG 696
R+ GA +K GK Y+PQ + GT+ ENI FG++ E+++E
Sbjct: 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADP---EKIIEA 427
Query: 697 CALNQDIEMWA---DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
L E+ DG +V+G G LSGGQ+QRI LARA+Y + + + D+P S +D
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 754 HTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
G + L ++ TV+ TH+ L D +LV++DG+I + G+ ++++A
Sbjct: 488 -EGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-25
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 13/253 (5%)
Query: 1194 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1253
N PS P + P PE G + +EN+ + L+GI+ + + + ++
Sbjct: 298 LANYPSRDPAM---PLPEPE----GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAII 350
Query: 1254 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRT 1313
G +GSGKSTL + + + P+ G + +DG D+ + + +PQD LF GTV
Sbjct: 351 GPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410
Query: 1314 NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL---LDAPVAEDGENWSVGQRQLVCLARV 1370
N+ +++D E ++I LA + RL D + G S GQRQ + LAR
Sbjct: 411 NIARFGENADPE--KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468
Query: 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDNDLVLVLDE 1429
L +++VLDE +++D + + I+ +R TV+ + HR + D +LVL +
Sbjct: 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528
Query: 1430 GKVLEYDSPRQLL 1442
G++ + ++L
Sbjct: 529 GRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVP 665
++ G + G G+GK++LL + G + SG I V G YVP
Sbjct: 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRRIGYVP 84
Query: 666 QS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLS 722
Q S T+REN+ F + EE + IE + G ++ LS
Sbjct: 85 QEPSLYPELTVRENLEFFARLYGLSKEEA------EERIEELLELFGLEDKANKKVRTLS 138
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL 780
GG KQR+ +A A+ + ++ I D+P S +D + + L L + T+L +TH L
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKEGGVTILLSTHIL 197
Query: 781 EFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
E + D V+++ DGKI G E+L + V +++ R L
Sbjct: 198 EEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELA 244
|
Length = 293 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 1220 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I++ENL Y P L + + +G++G TGSGKSTLIQ L +++P+ G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1277 RILIDGVDIS--MIGLQDLRSRLSIIPQDP--MLFQGTVR-------TNLDPLEQHSDQE 1325
+I+IDGVDI+ + L D+R ++ ++ Q P LF+ T+ NL S++E
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG----LSEEE 118
Query: 1326 IWEVINKCHLAEIVRQD-QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
I + + IV D + D E S GQ++ V +A V+ + +IL+LDE T
Sbjct: 119 IENRVKRA--MNIVGLDYEDYKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPT 172
Query: 1385 ASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440
A +D + I I+E + T+I V+H + V D ++V+++GK +PR+
Sbjct: 173 AGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-23
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664
++I G V + G GSGKS+L I +G + V G + V
Sbjct: 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVGVV 81
Query: 665 PQSSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
Q + + +IR+NI G M + L G + I +G ++VGE+G L
Sbjct: 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGA--HDFISELPEGYDTIVGEQGAGL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQ+QRI +ARA+ N + IFD+ SA+D + H + + + + +TV+ H+L
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYES-EHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ AD ++VM+ G+I + G +++L+A
Sbjct: 199 TVKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 4e-23
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 46/216 (21%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ NL +Y L I+ T + G++G G+GK+TLI+ + +++P G I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
+ G DI ++++ R+ +P++P L++ TVR NL
Sbjct: 59 VLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1339 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398
S G +Q + LA+ LL +L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1399 IREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKV 1432
+RE T++ +H + D V +L+ G++
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-23
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK 661
KKP +K + G + + G GSGKS+L ++G P R+ GA ++ ++
Sbjct: 348 KKPILKGIS-FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 662 A------YVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWA---DGDL 711
Y+PQ + GTI ENI FG++ E+V+E L E+ G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAARLAGVHELILRLPQGYD 463
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ +GE G LSGGQ+QRI LARA+Y + + + D+P S +D+ G ++ ++
Sbjct: 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARG 522
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
TV+ H+ L + D +LV++DG+I G E+++A
Sbjct: 523 GTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 5e-23
Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRLSIIPQ 1302
GE +G+VG +GSGKSTL + L ++ PS G I+ DG D+ + G L+ LR R+ ++ Q
Sbjct: 316 EGET-LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 1303 DP---MLFQGTVRTNL-DPLEQHSD---QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355
DP + + TV L +PL H E + + E+V LD E
Sbjct: 375 DPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL--ELVGLPPEFLDRYPHEL-- 430
Query: 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAH 1413
S GQRQ V +AR L + ++L+LDE +++D + + +++ T + ++H
Sbjct: 431 --SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488
Query: 1414 RIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
+ V D V V+ +G+++E ++ E+ +++
Sbjct: 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTR 527
|
Length = 539 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-23
Identities = 103/472 (21%), Positives = 188/472 (39%), Gaps = 49/472 (10%)
Query: 366 FAGPSSGIIINMINVDVERIG----DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421
F +G +++ I D E++ D F+ + R L + L +V+LY +
Sbjct: 105 FDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETL--TVIGLFIVLLYYSWQLTLIVVV 162
Query: 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL 481
+ + +++ ++ R R I + ETL+ RV+KL + ++
Sbjct: 163 MLPVLSILMRR--VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFD 220
Query: 482 RLREIERDSLKKYLYTCSAIAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATF 539
+ R K S + + AS L V+ + LT+G + +
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAM 280
Query: 540 RILQEPIYNLPELISMIAQTKVSLYRIQEFIKE----DNQKKPITEPTSKASDVAIDIEA 595
L P+ +L + + + + + + + D + I +
Sbjct: 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFR- 339
Query: 596 GEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISG 652
Y R P + + I G VA+ G GSGKS+L++ I PR
Sbjct: 340 --YPGRDR------PALDSIS-LVIEPGETVALVGRSGSGKSTLVNLI----PRFYEPDS 386
Query: 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA- 698
I + G + A V Q + TI NI +G Q+ E+ A
Sbjct: 387 GQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYG-RTEQADRAEIERALAA 445
Query: 699 --LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
++ G + +GE G+ LSGGQ+QR+ +ARA+ ++ + I D+ SA+D +
Sbjct: 446 AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505
Query: 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ + L L+ +T L H+L ++ AD ++VM DG+I + G + +L+A
Sbjct: 506 RLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 1220 IELENLLVQYNP---TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I +E+ ++ LK I P + + +VG GSGKS+L+ AL +E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
+ + G ++ + Q+P + GT+R N+ + ++ +VI C L
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL- 106
Query: 1337 EIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT- 1391
D +L + E G N S GQ+Q + LAR + I +LD+ +++D
Sbjct: 107 ---EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 1392 DNVIQQTIREETSRC-TVITVAHRIPTVIDNDLVLVLDEGK 1431
++ + I T I V H++ + D ++VLD G+
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-22
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 45/180 (25%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
+ G VA+ G GSGKS+LL +I G + SG +
Sbjct: 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL----------------------- 57
Query: 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
+ GKD+ + EE+ V + LSGGQ+QR+ LARA+ N
Sbjct: 58 -IDGKDIAKLPLEELRRRI--------------GYVPQ----LSGGQRQRVALARALLLN 98
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLD-AADLVLVMKDGK 796
D+ + D+P S +D + + L L + +TV+ TH E + AAD V+V+KDGK
Sbjct: 99 PDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 3e-22
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 48/219 (21%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+EL+N+ +Y VL ++ + + ++G +GSGKSTL++ + + EP G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1280 IDGVDISMIG--LQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHL 1335
IDG D++ + L LR R+ ++ QD LF TV N+ L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL----------------- 101
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
S GQ+Q V LAR L +L+LDE T+++D T +
Sbjct: 102 ----------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 1396 QQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGK 1431
+ ++ TV+ V H + D V+VL +GK
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 3e-22
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 52/221 (23%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
E+ENL V Y VL ++ + + +G++G G+GKSTL++ L +++PS G IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1340
DG D++ + ++L +++ +PQ L L L +D+ E+
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ--AL----ELLGLAHL---ADRPFNEL----------- 98
Query: 1341 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400
S G+RQ V LAR L ++ IL+LDE T+ +D A + + +R
Sbjct: 99 -----------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1401 EET--SRCTVITVAHRIPTVIDN------DLVLVLDEGKVL 1433
TV+ V H + N D V++L +G+++
Sbjct: 142 RLARERGKTVVMVLHDL-----NLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-22
Identities = 85/310 (27%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 532 VLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTS---KASD 588
V +ALA F L P+ + Q S RI E QK +T PT+ A
Sbjct: 284 VFAALAAFEALM-PV---AGAFQHLGQVIASARRINEIT---EQKPEVTFPTTSTAAADQ 336
Query: 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL---- 644
V++ + + + + + K + L I G KVA+ G G GKS+LL +
Sbjct: 337 VSLTLNNVSFTYPDQPQPVLK-GLSLQ----IKAGEKVALLGRTGCGKSTLLQLLTRAWD 391
Query: 645 ---GEIPRISGAAIKVHGKKA------YVPQSSWIQTGTIRENILFGKD----------M 685
GEI ++G I + + A V Q + + T+R+N+L +
Sbjct: 392 PQQGEI-LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVL 450
Query: 686 RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745
+Q E++LE ++ + W +GE G LSGG+++R+ +ARA+ ++ + + D
Sbjct: 451 QQVGLEKLLED---DKGLNAW-------LGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500
Query: 746 DPFSAVDAHTGTHLFKQCLMGLLSQ----KTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+P +DA T ++ ++ LL++ KTVL TH+L L+ D + VM +G+I + G
Sbjct: 501 EPTEGLDAET-----ERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555
Query: 802 KYEDLIADQN 811
+++L+A Q
Sbjct: 556 THQELLAQQG 565
|
Length = 574 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 1220 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
IEL+N+ + T V LK ++ + P + G++GR+G+GKSTLI+ + + P+ G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1278 ILIDGVDISMI---GLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVI 1330
+L+DG D++++ L+ R R+ +I Q L TV N+ PLE EI E +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L E+V + + P S GQ+Q V +AR L ++L+ DEAT+++D
Sbjct: 122 L--ELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
T I +R+ T++ + H + V D V V+++G+V+E + ++
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-22
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
Query: 1261 STLIQALFRVVEPSGGRILIDGVDI-SMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLDP- 1317
STL++ + +++P+ G IL+DG D + + LR R+ ++ QDP LF + TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1318 -LEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376
++ +D E + + L + + ++ S GQ+Q V +AR LLKK +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 1377 ILVLDEATA 1385
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 41/205 (20%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------AYVPQSSWI 670
++ G +A+ G G+GKS+LL +ILG + SG+ I+V GK YVPQ I
Sbjct: 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRSI 79
Query: 671 QTG---TIRENIL--------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
++R+ +L + + ++ +V E AL LS + +R I
Sbjct: 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE--AL-------ERVGLSELADRQI 130
Query: 720 -NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGGQ+QR+ LARA+ + D+ + D+PF+ VD T ++ + LL + T+
Sbjct: 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLRELRREGMTI 185
Query: 774 LYTTHQLE-FLDAADLVLVMKDGKI 797
L TH L L+ D VL++ +
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
++LENL +Y L G++ T G++G G+GK+TL++ L + PS G I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPL-------EQHSDQEIWEVIN 1331
IDG D+ + Q LR R+ +PQ+ ++ TVR LD + + + EV+
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
+L + R +++ + S G R+ V +A+ L+ IL++DE TA +D
Sbjct: 117 LVNLGD--RAKKKI---------GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1392 DNVIQQTIREETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVL 1433
+ + E VI H + V + V VL++GK++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ENL V Y VL+ I+ + + ++G G+GKSTL++A+ +++PS G I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVR-----------TNLDPLEQHSDQE 1325
I G + + R R+ +PQ + F TV+ L + ++
Sbjct: 63 IFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1326 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
+ E + + + + L D + E S GQ+Q V LAR L + +L+LDE
Sbjct: 120 VDEALERVGMED-------LRDRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 1386 SIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLE 1443
+D A I ++E TV+ V H + V+ D V+ L ++ P ++L
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227
Query: 1444 D 1444
+
Sbjct: 228 E 228
|
Length = 254 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 1e-21
Identities = 57/158 (36%), Positives = 99/158 (62%), Gaps = 7/158 (4%)
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1335
G+IL+DGVDI L+DLR+ SI+ Q+PMLF ++ N+ ++ + +E +V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE--DVKRACKF 1334
Query: 1336 A---EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
A E + D V G++ S GQ+Q + +AR LL++ +IL+LDEAT+S+D+ ++
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1393 NVIQQTIREETSRC--TVITVAHRIPTVIDNDLVLVLD 1428
+I++TI + + T+IT+AHRI ++ +D ++V +
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-21
Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 29/249 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+EL+N+ + VLK + + + ++G +G GKSTL++ + + EP+ G IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLE--QHSDQEI-WEVINKCH 1334
IDG D++ + + R ++++ Q+ L+ TV N+ L+ EI V
Sbjct: 62 IDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK---E 116
Query: 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
+A+++ + LL+ + S GQRQ V LAR L++K ++ +LDE +++D +
Sbjct: 117 VAKLLGLEH-LLNRKPLQ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171
Query: 1395 IQQTIRE--ETSRCTVITVAHRIPTVIDNDL----VLVLDEGKVLEYDSPRQLLEDNSSS 1448
++ I++ E T I V H ++ ++V+++G++ + +P +L E ++
Sbjct: 172 MRSEIKKLHERLGTTTIYVTHD---QVEAMTLADRIVVMNDGRIQQVGTPLELYERPANL 228
Query: 1449 FSKLVAEFL 1457
F VA F+
Sbjct: 229 F---VAGFI 234
|
Length = 338 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 24/249 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE EN+ +Y V + + + ++G +GSGK+T ++ + R++EP+ G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTN--LDP-LEQHSDQEIWEVINKCHL 1335
IDG DI +LR ++ + Q LF TV N L P L + ++I
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI--------- 110
Query: 1336 AEIVRQDQRLLDAPVAEDGENW----SVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
E + L+ AE + + S GQ+Q V +AR L +L++DE ++D T
Sbjct: 111 RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
Query: 1392 DNVIQQTIR--EETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448
+ +Q+ + ++ T++ V H I D + ++ G++++ +P ++L ++
Sbjct: 171 RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230
Query: 1449 FSKLVAEFL 1457
F VAEF+
Sbjct: 231 F---VAEFV 236
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-21
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 28/232 (12%)
Query: 1220 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
IEL+N+ Y LK + GE + +VG +GSGKSTL+ L + +P+ G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEF-VAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1277 RILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVI 1330
+LI+G D++ + ++L R ++ + Q+ L TV N++ PL
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L E++ + RLL +E S GQ+Q V +AR L+ +I++ DE T ++D+
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDL------VLVLDEGKVLE 1434
T + + +RE + T+I V H D +L V+ L +GK+ E
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTH------DPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 6e-21
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 605 ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--- 661
+ +P + + I KG V + G GSGKS+LL + G + SG + V GK
Sbjct: 10 PDGARPALDDIS-LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTK 67
Query: 662 ----------AYVPQ--SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
V Q T+ E + FG + EE+ E + E
Sbjct: 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV 122
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
L + +R LSGGQKQR+ +A + + D+ + D+P + +D L + LL
Sbjct: 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE-----LL 177
Query: 769 SQ-----KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
+ KT++ TH L+ L AD V+V++DGK
Sbjct: 178 KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 9e-21
Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
I KG + G GSGKS+LL + G + SG + + GK AYV
Sbjct: 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKKLAYV 81
Query: 665 PQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIE--MWADGDLSVVG-----E 716
PQS G T+ E +L G+ + + +D E A L ++G +
Sbjct: 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSK-----EDEEIVEEA---LELLGLEHLAD 133
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----- 770
R ++ LSGG++QR+ +ARA+ + + + D+P S +D H + ++ LL
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA---HQIE--VLELLRDLNREK 188
Query: 771 -KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
TV+ H L AD ++++KDGKI G E+++ ++N
Sbjct: 189 GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 50/204 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------AYVPQS 667
+ + KG A+ G G+GKS+LL +ILG + SG IK+ GK YVPQ
Sbjct: 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGYVPQK 83
Query: 668 SWIQTG---TIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLSVVGE 716
S + T+++ +L G+ ++ ++ E+V E AL + + M + +
Sbjct: 84 SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE--ALER-VGMED------LRD 134
Query: 717 RGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----- 770
R I LSGGQKQR+ LARA+ N D+ + D+PF+ VD ++ + LL +
Sbjct: 135 RQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG-----QKEIYDLLKELRQEG 189
Query: 771 KTVLYTTHQLEFLDAADLVLVMKD 794
KTVL TH DL LVM
Sbjct: 190 KTVLMVTH--------DLGLVMAY 205
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 28/229 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+EL+ L Y L ++ T + + ++G +G GK+TL++ + + P G IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL--------DPLEQHSDQEIWEVI 1330
IDG D++ G+ R + ++ QD LF TV N+ P + +
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE--- 113
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L E+V + LL+ E S GQ+Q V LAR L ++ +L+LDE +++D
Sbjct: 114 ----LLELVGLE-GLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436
+++ ++E T I V H + D + V++EG++++
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-20
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKK-AYVPQSS-- 668
+ + KG VA+ G G GKS+LL I G E P + G + G YV Q
Sbjct: 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83
Query: 669 --WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN------ 720
W+ T+ +N+ G ++R E E A L +VG G
Sbjct: 84 LPWL---TVLDNVALGLELRGKSKAEARE----------RAKELLELVGLAGFEDKYPHQ 130
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTH 778
LSGG +QR+ +ARA+ + + + D+PF A+DA T L + L+ L +KTVL TH
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE-LLRLWEETRKTVLLVTH 189
Query: 779 QLE---FLDAADLVLVMKDG 795
++ +L AD V+V+ +
Sbjct: 190 DVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-20
Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 35/250 (14%)
Query: 1220 IELENLLVQYN--PTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP--- 1273
+E+ENL V++ ++ ++ PGE +G+VG +GSGKSTL AL ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEI-LGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1274 -SGGRILIDGVDISMIGLQDLRS----RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1328
+ G +++DG D+ + +++R R+++I QDPM T+L+P+ DQ I E
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPVMTIGDQ-IRE 116
Query: 1329 VI---NKCHLAEIVRQDQRLLDA---PVAEDGENW----SVGQRQLVCLARVLLKKKRIL 1378
+ K AE ++ LL+ P E + + S G RQ V +A L K ++L
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176
Query: 1379 VLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLE 1434
+ DE T ++D T I +++ V+ + H V+ D V+V+ +G+++E
Sbjct: 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADRVVVMYKGEIVE 235
Query: 1435 YDSPRQLLED 1444
++L +
Sbjct: 236 TGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 50/236 (21%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
E+E+L V Y VL+ ++ + + +VG G+GKSTL++A+ +++P+ G I +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVI-----NK 1332
G + R R+ +PQ R ++D P+ + +V+
Sbjct: 59 FGKPLEKE-----RKRIGYVPQ---------RRSIDRDFPIS------VRDVVLMGLYGH 98
Query: 1333 CHLAEIVRQDQR--------------LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
L + + + L D + E S GQ+Q V LAR L++ +L
Sbjct: 99 KGLFRRLSKADKAKVDEALERVGLSELADRQIGE----LSGGQQQRVLLARALVQDPDLL 154
Query: 1379 VLDEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1432
+LDE A +D T I + +RE T++ V H + V++ D VL+L+ V
Sbjct: 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 4e-20
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 28/243 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGIT-CTFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I+ EN+ Y+P PM KG+ +F E+ + +VG TGSGKSTL+Q +++PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1277 RILIDGVDI----SMIGLQDLRSRLSIIPQDP--MLFQGTVRT-------NLDPLEQHSD 1323
I I G I L+ LR ++S++ Q P LF+ TV N E +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
++ + + K L+E + +P G GQ + V +A V+ + IL LDE
Sbjct: 123 EKALKWLKKVGLSE-----DLISKSPFELSG-----GQMRRVAIAGVMAYEPEILCLDEP 172
Query: 1384 TASIDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
A +D + Q ++ + + TVI V H + V + D VLVL+ GK++++ SP+++
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
Query: 1442 LED 1444
D
Sbjct: 233 FSD 235
|
Length = 287 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 27/265 (10%)
Query: 532 VLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS---D 588
VL LA F E LP + + + + RI E + + P + A
Sbjct: 277 VLLPLAAF----EAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGK 332
Query: 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648
+++ + ++ L G +VA+ G GSGKS+LL+++ G +
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLP------PGERVAILGPSGSGKSTLLATLAGLLD 386
Query: 649 RISG------------AAIKVHGKKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLE 695
+ G +V + + Q + + T+REN+ + D LE
Sbjct: 387 PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALE 446
Query: 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
L + DG +V+GE G LSGG++QR+ LARA+ +++ + + D+P +DA T
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 756 GTHLFKQCLMGLLSQKTVLYTTHQL 780
L + L LS +TV+ TH L
Sbjct: 507 ADELLEDLLAA-LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 7e-20
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 25/246 (10%)
Query: 1212 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271
IE+ + + + +L G+ P + + ++G +GSGKSTL++ + ++
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 1272 EPSGGRILIDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSD--- 1323
P G ILIDG DI S L ++R R+ ++ Q LF TV N+ PL +H+
Sbjct: 59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE 118
Query: 1324 ---QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380
+E+ V+ K L V D +E S G R+ V LAR + +L L
Sbjct: 119 SLIREL--VLMKLEL---VGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFL 169
Query: 1381 DEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437
DE T+ +D + VI + IRE + TVI V H + +++ D V VL +GKV+ +
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
Query: 1438 PRQLLE 1443
P +LL
Sbjct: 230 PEELLA 235
|
Length = 263 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-20
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQ 666
+ I KG V + G G GK++LL I G + S I + G+ V Q
Sbjct: 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
S + T+ EN+ FG +R+ + ++ E L +R + LSGG
Sbjct: 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE----EALELVGLEGFADRKPHQLSGG 140
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLE 781
Q+QR+ LARA+ V + D+P SA+DA + K+ L L + T +Y TH Q E
Sbjct: 141 QQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEE 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
L +D + VM DG+IEQ G E++
Sbjct: 200 ALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 8e-20
Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 33/321 (10%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLSALATF--RILQEPIYNLPELISMIAQTKVSLYRIQ 567
T ++ FG +++ L+ G L A R+ Q P+ L +L QT ++L R+
Sbjct: 375 TFAILLWFGAHLVIGGALSPGQ-LVAFNMLAGRVTQ-PVLRLAQLWQDFQQTGIALERLG 432
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK----KPTIKLTDKMKIMKG 623
+ + TEP S A A+ G + F+ P + + I G
Sbjct: 433 DILNSP------TEPRS-AGLAALPELRGAITF--ENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI--QTGTI-RENIL 680
+ + G GSGKS+L + +L + + V G + +W+ Q G + +EN+L
Sbjct: 484 EFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542
Query: 681 FGKDMRQSF--------YEEVLEGCAL---NQDIEMWADGDLSVVGERGINLSGGQKQRI 729
F + +R + +E V+ L + I G + VGE+G NLSGGQ+QRI
Sbjct: 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ N + IFD+ SA+D + L + + + +TV+ H+L + A D +
Sbjct: 603 AIARALVGNPRILIFDEATSALDYES-EALIMRNMREICRGRTVIIIAHRLSTVRACDRI 661
Query: 790 LVMKDGKIEQSGKYEDLIADQ 810
+V++ G+I +SG++E+L+A Q
Sbjct: 662 IVLEKGQIAESGRHEELLALQ 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 8e-20
Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYVPQ- 666
KG +V + G GSGKS+LL + G + SG + V G V Q
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE-VLVDGLDTSSEKSLLELRQKVGLVFQN 87
Query: 667 --SSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
T+ + + FG +++ E LE L + ++
Sbjct: 88 PDDQLFGP-TVEDEVAFGLENLGLPREEIE-ERVAEALELVGLEELLDRPPF-------- 137
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVL 774
NLSGGQKQR+ +A + ++ + D+P + +D G + L L + KT++
Sbjct: 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK-GRRELLELLKKLKEEGGKTII 193
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810
TH LE + + AD V+V+ DGKI G ++ D
Sbjct: 194 IVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 9e-20
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ +G K+A+ G GSGKS+LL + G PQ I +
Sbjct: 25 LKQGEKIALLGRSGSGKSTLLQLLTG----------------DLKPQQGEITLD--GVPV 66
Query: 680 L-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
K + LNQ ++ + +G R SGG++QR+ LAR + +
Sbjct: 67 SDLEKALSSLI-------SVLNQRPYLFDTTLRNNLGRR---FSGGERQRLALARILLQD 116
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ + + D+P +D T L + +L KT+++ TH L ++ D +L +++GKI
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII 175
Query: 799 QSG 801
G
Sbjct: 176 MQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-20
Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 25/249 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE EN+ +Y + + T + + ++G +GSGK+T ++ + R++EP+ G IL
Sbjct: 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTN-------LDPLEQHSDQEIWEVIN 1331
IDG DIS + +LR ++ + Q LF TV N L ++ + E+++
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
L D E S GQ+Q V +AR L IL++DE ++D T
Sbjct: 120 LVGLDP-----SEYADRYPHE----LSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 1392 DNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448
+Q+ I+E + T++ V H I + D + V+D G++++YD+P ++L + ++
Sbjct: 171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230
Query: 1449 FSKLVAEFL 1457
F V +F
Sbjct: 231 F---VEDFF 236
|
Length = 309 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 37/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + +G +A+ G GSGKS+LL ILG + G I + G+ +PQ S + IR+
Sbjct: 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE-ILIDGED--IPQLSEEELYEIRK 85
Query: 678 NI--------LFGKDMRQSFYEEV----LEGCALNQD-IEMWADGDLSVVGERGIN---- 720
+ LF + + +E V E L + I L +VG RG
Sbjct: 86 RMGVLFQQGALFS-SL--TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142
Query: 721 ---LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFK--QCLMGLLSQKT 772
LSGG ++R+ LARA+ + ++ D+P S +D + L + +GL T
Sbjct: 143 PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL----T 198
Query: 773 VLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
V+ TH L L AD V V+ DGK+ G E+L+A + VRQ
Sbjct: 199 VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP-WVRQ 243
|
Length = 263 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 14/235 (5%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I +N+ QY LK ++ P + +VG GSGKST+ + + + + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLD-PLEQHS--DQEIWEVINKCH 1334
+ I+ + LR + I+ Q+P F G V+ ++ LE H+ E+ +++
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA- 126
Query: 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
L ++ ++ P A G GQ+Q V +A VL +++LDEAT+ +D
Sbjct: 127 LKQVDMLERA-DYEPNALSG-----GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
Query: 1395 IQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1447
+ +R+ T+I++ H + ++ D V+V+++G V + +P ++ +
Sbjct: 181 LLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 41/251 (16%)
Query: 1220 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
+ + NL + Y L ++ GE +G+VG +GSGKSTL + L + +PS G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGET-LGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1277 RILIDGVDI-SMIGLQDLRSRLSIIPQDPML----FQGTVRTNL-DPLEQH----SDQEI 1326
IL+DG + + + ++ QDP + TV L +PL H S Q I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR-TVGRILSEPLRPHGLSKSQQRI 121
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E++++ L L P G GQRQ + +AR L+ + ++L+LDE T++
Sbjct: 122 AELLDQVGL-----PPSFLDRRPHELSG-----GQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1387 IDTATDNVIQ-------QTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDS 1437
+D +Q +++E T + ++H + ++++ D + V+D G+++E
Sbjct: 172 LDV----SVQAQILNLLLELKKE-RGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVE-IG 224
Query: 1438 PRQLLEDNSSS 1448
P + L + S
Sbjct: 225 PTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 38/197 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK-AYVPQSS-- 668
+ + +G VA+ G G GKS+LL I G + G + G YV Q
Sbjct: 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDAL 84
Query: 669 --WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------N 720
W+ T+ +N+ G +++ E E A+ L +VG G
Sbjct: 85 LPWL---TVLDNVALGLELQGVPKAEARER----------AEELLELVGLSGFENAYPHQ 131
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGG +QR+ LARA+ + DV + D+PFSA+DA T L ++ L+ + + KTVL TH
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRETGKTVLLVTH 190
Query: 779 QLE---FLDAADLVLVM 792
++ FL AD V+V+
Sbjct: 191 DIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 20/191 (10%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSW 669
G A+ G GSGKS++++ +L + G + + GK + V Q
Sbjct: 40 GEVTALVGPSGSGKSTVVA-LLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV 98
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLE---GCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ ++++NI +G ++ +E V E + I A G + VGE+G LSGGQK
Sbjct: 99 LFARSLQDNIAYG--LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +ARA+ N V I D+ SA+DA + +Q L ++TVL H+L ++ A
Sbjct: 157 QRVAIARALIRNPQVLILDEATSALDAES-EQQVQQALYDWPERRTVLVIAHRLSTVERA 215
Query: 787 DLVLVMKDGKI 797
D +LV+ G+I
Sbjct: 216 DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 3e-19
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 35/184 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + KG + G G+GK++L+ ILG + SG IKV GK + ++
Sbjct: 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGK------DIKKEPEEVKR 73
Query: 678 NI--LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
I L + S YE +L+V + LSGG KQR+ LA+A+
Sbjct: 74 RIGYLPEEP---SLYE------------------NLTV--RENLKLSGGMKQRLALAQAL 110
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMK 793
+ ++ I D+P S +D + F + L L + KT+L ++H LE + D V ++
Sbjct: 111 LHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169
Query: 794 DGKI 797
+G+I
Sbjct: 170 NGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 3e-19
Identities = 79/313 (25%), Positives = 143/313 (45%), Gaps = 65/313 (20%)
Query: 1178 LCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPM-V 1236
L N+ M S+E I + PLV +N+ + KI+ +N+ Y+ + +
Sbjct: 342 LPNITEYMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI 400
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI-DGVDISMIGLQDLRS 1295
K + T K VG +G GKST+++ + R+ +P+ G I+I D ++ I L+ RS
Sbjct: 401 YKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460
Query: 1296 RLSIIPQDPMLFQGTVRTN-------LDPLEQHSD---------QEIWEVINKCHL---- 1335
++ ++ QDP+LF +++ N L LE S+ QE N C
Sbjct: 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAG 520
Query: 1336 --------------------------AEIVRQDQRLL------------DAPVAEDGENW 1357
+E+V +++L + V +
Sbjct: 521 DLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKL 580
Query: 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI---REETSRCTVITVAHR 1414
S GQ+Q + +AR +++ +IL+LDEAT+S+D ++ ++Q+TI + +R T+I +AHR
Sbjct: 581 SGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII-IAHR 639
Query: 1415 IPTVIDNDLVLVL 1427
+ T+ + + VL
Sbjct: 640 LSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQS-SW 669
G +A+ G G GK++LL I G R I + G+ V Q +
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQR 728
T+ ENI FG +R E+ + E+ L + R + LSGGQ+QR
Sbjct: 84 FPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHELSGGQQQR 138
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDA 785
+ LARA+ + + D+P SA+DA L ++ L L + T +Y TH Q E L
Sbjct: 139 VALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALAL 197
Query: 786 ADLVLVMKDGKIEQSG 801
AD + VM +G+I Q G
Sbjct: 198 ADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 4e-19
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 32/230 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCT-FPGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1277
+EL + + L G++ T PGE + ++G G+GKSTL++ L V P G
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 1278 ILIDGVDISMIGLQDLRSR-LSIIPQDPMLF-QGTVRTNL----DPLEQHSDQEIWEVIN 1331
ILIDG ++ +D + ++ + Q+ L +V N+ +P + + +I+
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR------FGLID 118
Query: 1332 KCHLAEIVRQ------DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
+ + R+ D V + S+ QRQ+V +AR L R+L+LDE TA
Sbjct: 119 RKAMRRRARELLARLGLDIDPDTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTA 174
Query: 1386 SIDTA-TDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1432
++ T+ + IR ++ +I ++HR+ V + D + VL +G+V
Sbjct: 175 ALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-19
Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 19/239 (7%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ENL Y P LK ++ + + + ++G +G+GKSTL++ L +VEP+ G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1280 IDGVDISMIG---LQDLRSRLSIIPQDPMLF-QGTVRTNL--DPLEQHSDQEIWEVI-NK 1332
IDG DI+ + L+ LR ++ +I Q L + +V N+ L + S W +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS---TWRSLFGL 116
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGE----NWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
E R L + + S GQ+Q V +AR L+++ ++++ DE AS+D
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1444
A+ + ++ TVI H++ + D ++ L +G+++ +D P L D
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD 234
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 7e-19
Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 21/204 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQ 666
+++ GS VA+ G GSGKS+LL I G SG I+++G+ A +V Q
Sbjct: 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR-IRLNGQDATRVHARDRKIGFVFQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
+ + T+R+NI FG ++R+ ++ + + +E+ L +G+R N LSGG
Sbjct: 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKA--RVEELLELV---QLEGLGDRYPNQLSGG 134
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQCLMGLLSQKTVLYTTHQLEF 782
Q+QR+ LARA+ V + D+PF A+DA L + + L + TV T Q E
Sbjct: 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194
Query: 783 LDAADLVLVMKDGKIEQSGKYEDL 806
++ AD ++VM +GKIEQ G +++
Sbjct: 195 MEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 8e-19
Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 20/202 (9%)
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSW 669
G VA+ G G+GKS++L + G I I G I+ ++ VPQ +
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIRDVTQQSLRRAIGIVPQDTV 347
Query: 670 IQTGTIRENILFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ TI NI +G+ EEV E ++ I+ +G + VGERG+ LSGG+K
Sbjct: 348 LFNDTIAYNIKYGRPDAT--AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +AR + N + I D+ SA+D HT + L + + +T L H+L + A
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHT-EQAIQAALREVSAGRTTLVIAHRLSTIIDA 464
Query: 787 DLVLVMKDGKIEQSGKYEDLIA 808
D ++V+ +G+I + G +E+L+A
Sbjct: 465 DEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 8e-19
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 55/232 (23%)
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-----------KAYV 664
+++ +G + G GSGKS LL +I G I SG I ++GK +YV
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISYV 76
Query: 665 PQS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCA-------LNQDIEMWADGDLS 712
PQ+ + T+ +NI +G K ++ +VLE LN+ E
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-------- 128
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
LSGG++QR+ +ARA+ N + + D+PFSA+D T K+ L L +
Sbjct: 129 -------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKKIR 176
Query: 771 ----KTVLYTTHQLEFLDA---ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
TVL+ TH E +A AD V +M +GK+ Q GK E++ +E V
Sbjct: 177 KEFGVTVLHVTHDFE--EAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFV 226
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 8e-19
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+++E L Y LKGI + ++G G+GKSTL Q L +++PS GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1280 IDG--VDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLEQHSDQEIWEVIN-KCH 1334
DG +D S GL LR + ++ QDP LF +V ++ + +N K
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS----------FGAVNLKLP 114
Query: 1335 LAEIVRQDQRLLD----APVAEDGENW-SVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
E+ ++ L + + + S GQ++ V +A VL+ + ++LVLDE TA +D
Sbjct: 115 EDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174
Query: 1390 ATDNVIQQTIRE--ETSRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLED 1444
+ I + + E + T+I H I V + D V V+ EG+V+ +P+++ +
Sbjct: 175 MGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-18
Identities = 86/325 (26%), Positives = 156/325 (48%), Gaps = 45/325 (13%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLS--ALATFRILQEPIYNLPELISMIAQTKVSLYRIQ 567
T+++++ G ++ K L G V++ AT I + L ++++ I Q ++ +++
Sbjct: 253 TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR-----LDQVVAFINQVFMAAPKLE 307
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIE--AGEYAWDAREENFKKPTIK--LTD-KMKIMK 622
EF + ++ + +P AID+ G +D + +F + + D +
Sbjct: 308 EFFEVEDAVPDVRDPPG-----AIDLGRVKGAVEFD--DVSFSYDNSRQGVEDVSFEAKP 360
Query: 623 GSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVHGKK------AYVPQSSW 669
G VA+ G G+GKS+L++ + G I I G I+ + A V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LIDGTDIRTVTRASLRRNIAVVFQDAG 419
Query: 670 IQTGTIRENILFGK------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ +I +NI G+ +MR E + IE DG +VVGERG LSG
Sbjct: 420 LFNRSIEDNIRVGRPDATDEEMR-----AAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
G++QR+ +ARA+ + + I D+ SA+D T + K L L+ +T H+L +
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTV 533
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIA 808
AD +LV +G++ +SG +++L+A
Sbjct: 534 RNADRILVFDNGRVVESGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-18
Identities = 93/332 (28%), Positives = 147/332 (44%), Gaps = 36/332 (10%)
Query: 509 PTLVSVITFGVCILLKT--PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYR- 565
P L S F I L L+ G+ L+ F + L + I + L+
Sbjct: 369 PVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV-IPLWER 427
Query: 566 ---IQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIM 621
I E + E ++ K T+P + + +D Y D P I L D ++I
Sbjct: 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDG-------PLI-LDDVSLQIE 477
Query: 622 KGSKVAVCGSVGSGKSSLLSSILG-EIPRI-----SGAAIK------VHGKKAYVPQSSW 669
G VA+ G GSGKS+LL +LG E P G + V + V Q+
Sbjct: 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+ +G+I ENI G + E L +DI G +V+ E G LSGGQ+QR+
Sbjct: 538 LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ + +FD+ SA+D T + + L L + T + H+L + AD +
Sbjct: 598 LIARALVRKPRILLFDEATSALDNRTQAIV-SESLERL--KVTRIVIAHRLSTIRNADRI 654
Query: 790 LVMKDGKIEQSGKYEDLIADQN--SELV-RQM 818
V+ G++ Q G Y++L+A + ++L RQ+
Sbjct: 655 YVLDAGRVVQQGTYDELMAREGLFAQLARRQL 686
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-18
Identities = 107/406 (26%), Positives = 182/406 (44%), Gaps = 75/406 (18%)
Query: 448 EAKDARIKATS---ETLKSMRVLKLLSWE----QEFLKKLLRLREIERDSLKKYLYTCSA 500
E ++A KA E L MR ++ + E F + L ++ + +K L A
Sbjct: 331 ELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK---RKAL----A 383
Query: 501 IAFLFW-----ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISM 555
A W V V+ +G ++L ++SG ++S L L E + L + S
Sbjct: 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSG 443
Query: 556 IAQTKVSLYRIQEFIKEDNQKKPITEPTS-----------KASDVAIDIEAGEYAWDARE 604
+ Q + ++ E++ +KP T + DV+ +++ R
Sbjct: 444 MMQAVGASEKVFEYL----DRKPNIPLTGTLAPLNLEGLIEFQDVS-------FSYPNRP 492
Query: 605 ENFKKPTIK-LTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK 656
+ P +K LT + G VA+ G GSGKS++ + + G++ + G +
Sbjct: 493 D---VPVLKGLT--FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVPLV 546
Query: 657 ------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL----EGCALNQDIEMW 706
+H + A V Q + +G++RENI +G + + EE++ A + +E
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEIMAAAKAANAHDFIMEFP 604
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
D + VGE+G LSGGQKQRI +ARA+ V I D+ SA+DA +Q L
Sbjct: 605 NGYD-TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-----EQLLQE 658
Query: 767 LLSQK--TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
S+ TVL H+L ++ AD +LV+K G + + G ++ L+ DQ
Sbjct: 659 SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 33/220 (15%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1310
++G TGSGKS L++ + ++P G+IL++G DI+ L + +S +PQ+ LF T
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMT 87
Query: 1311 VRTNL---------DPLEQHSD-QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360
V N+ D E EI E++ HL R+ + L S G
Sbjct: 88 VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN--RKPETL------------SGG 133
Query: 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTV 1418
++Q V +AR L+ +IL+LDE +++D T +++ +++ + TV+ V H
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1419 -IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
D V ++ GK+++ P ++ + + F VAEFL
Sbjct: 194 WALADKVAIMLNGKLIQVGKPEEVFKKPKNEF---VAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 55/280 (19%), Positives = 92/280 (32%), Gaps = 23/280 (8%)
Query: 890 GALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSG---GSSFFILG 946
L L L ++ D R LI + I L + G
Sbjct: 8 LILAGATALVFPLL------LGRFLDSLIDGN-GDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006
L + + +RLF ++ + P+SFFD+ + +R + D S + + +L
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTAREL 1066
+L ++ I+M W+ L LV+L I LL A R+L
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWK---LTLVLLAILPLL---------ILLSAVLAKKLRKL 168
Query: 1067 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLC 1126
R A ES++G T++ F +E L R ++D T
Sbjct: 169 NRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSF 228
Query: 1127 LRINLLFNFAFFLVLIILVTLP-RSAIDPSLAGLAATYGL 1165
L+ ++ L L L + + GL
Sbjct: 229 GITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 55/191 (28%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK------AYVPQS 667
I G +A+ G GSGKS+L ILG + R+ GA I Y+PQ
Sbjct: 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD 84
Query: 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
+ +G+I ENIL SGGQ+Q
Sbjct: 85 DELFSGSIAENIL-----------------------------------------SGGQRQ 103
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAA 786
R+ LARA+Y N + + D+P S +D G Q + L + T + H+ E L +A
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVIAHRPETLASA 162
Query: 787 DLVLVMKDGKI 797
D +LV++DG++
Sbjct: 163 DRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 2e-18
Identities = 80/316 (25%), Positives = 155/316 (49%), Gaps = 29/316 (9%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569
+++ ++ G +++K L+ G V++ + +L I L ++ I Q + ++++F
Sbjct: 253 SMMCILVIGTVLVIKGELSVGEVIAFIGFANLL---IGRLDQMSGFITQIFEARAKLEDF 309
Query: 570 IKEDNQKKPITEPTS--KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVA 627
++ EP + +V +E ++ N + ++ + K G VA
Sbjct: 310 FDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF--ANSSQGVFDVSFEAK--AGQTVA 365
Query: 628 VCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVHGKK------AYVPQSSWIQTGT 674
+ G G+GK++L++ + +G+I I G I ++ A V Q + + +
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRKSIATVFQDAGLFNRS 424
Query: 675 IRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
IRENI G++ + EEV E A + I ++G ++VGERG LSGG++QR+ +
Sbjct: 425 IRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI 482
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
ARA+ N+ + + D+ SA+D T + K + L +T H+L + ADLVL
Sbjct: 483 ARAILKNAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLF 541
Query: 792 MKDGKIEQSGKYEDLI 807
+ G++ + G +++LI
Sbjct: 542 LDQGRLIEKGSFQELI 557
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 45/216 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G V + G G GKS+LL I G + + I + G+ A V Q
Sbjct: 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82
Query: 667 S-SWIQTGTIRENILFGKDMRQSF-------YEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ + T+ ENI FG +R +EV + L + +
Sbjct: 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-----------KP 131
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT-------GTHLFKQCLMGLLSQK 771
+ LSGGQ+QR+ LARA+ V++ D+P S +DA L ++
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER------LGT 185
Query: 772 TVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T +Y TH Q+E + AD ++VM DG+I+Q G +L
Sbjct: 186 TTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 14/221 (6%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLR 1294
L ++ + + G++G G+GK+TL + + P+ G +L DG DI+ GL
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEI 72
Query: 1295 SRLSIIP--QDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLD--- 1347
+RL I Q P LF TV N+ + + + + E + + LL+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG 132
Query: 1348 -APVAED-GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1405
A +A+ S GQ++ + +AR L ++L+LDE A ++ + + IRE R
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 1406 -CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1444
TV+ V H + V+ D V VLD+G+V+ +P ++ +
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 5e-18
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 43/245 (17%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+ENL Y + +L G++ T P + + ++GR G+GK+TL++ + ++ P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1280 IDGVDISMIGLQ-DLRSRLSI--IPQDPMLFQG-TVRTNLD----PLEQHSDQEIWEVI- 1330
DG DI+ GL R+R I +P+ +F TV NL + + E +
Sbjct: 59 FDGRDIT--GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY 116
Query: 1331 ----NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA- 1385
L E R+ Q S G++Q++ +AR L+ + ++L+LDE +
Sbjct: 117 ELFPR---LKE--RRKQL---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 162
Query: 1386 ---SIDTATDNVIQQTIREETSRCTVITV---AHRIPTVIDNDLVLVLDEGKVLEYDSPR 1439
I I++ E T++ V A + D VL+ G+V+ +
Sbjct: 163 LAPKIVEEIFEAIRELRDEGV---TILLVEQNARFALEIADR--AYVLERGRVVLEGTAA 217
Query: 1440 QLLED 1444
+LL D
Sbjct: 218 ELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 5e-18
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 46/252 (18%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKI-GVVGRTGSGKSTLIQALFRVVEP-SG- 1275
IE+ +L + Y LK I P + K+ ++G +G GKSTL++ L R+ + G
Sbjct: 7 AIEVRDLNLYYGDKH--ALKDINLDIP-KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 1276 ---GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEV 1329
G +L+DG +I + + +LR R+ ++ Q P F ++ N+ L H
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHG------- 116
Query: 1330 INKCHLAEIVRQ--------DQ---RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
I L EIV D+ RL + + G GQ+Q +C+AR L K +L
Sbjct: 117 IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG-----GQQQRLCIARALAVKPEVL 171
Query: 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAH------RIPTVIDNDLVLVLDEGKV 1432
++DE T+++D + I++ I E + T++ V H R+ +D G++
Sbjct: 172 LMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGEL 226
Query: 1433 LEYDSPRQLLED 1444
+E+ ++ +
Sbjct: 227 VEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 52/256 (20%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+E+ENL Y P LK I PGE + ++G +G+GKSTL++ + R+VEPS G I
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEF-VAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1279 LIDGVDISMIG---LQDLRSRLSIIPQDPML----------------FQGTVRTNLDPLE 1319
L++G DI+ + L+ LR R+ +I Q L ++ T R+ L
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1320 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379
+ + + + LA+ + QR + S GQ+Q V +AR L ++ +++
Sbjct: 120 EEDKERALSALERVGLAD--KAYQR---------ADQLSGGQQQRVAIARALAQQPDLIL 168
Query: 1380 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN-----------DLVLVLD 1428
DE AS+D T + ++ I I TVI N D ++ L
Sbjct: 169 ADEPIASLDPKTSKQVMDYLKR-------INKEDGI-TVIINLHQVDLAKKYADRIVGLK 220
Query: 1429 EGKVLEYDSPRQLLED 1444
G+++ +P +L ++
Sbjct: 221 AGEIVFDGAPSELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 9e-18
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 41/209 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------------- 661
+I G VA+ G GSGKS+LL+ +LG + + + + ++GK
Sbjct: 27 EIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKI 85
Query: 662 AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG--ERG 718
+V Q+ + + T+ EN+ + + A+ L V+G +R
Sbjct: 86 GFVFQNFNLLPDLTVLENVELPLLIAGK----------SAGRRKRAAEELLEVLGLEDRL 135
Query: 719 IN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
+ LSGGQ+QR+ +ARA+ +N + + D+P +D+ T + + L+ L++
Sbjct: 136 LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LLRELNKERG 193
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
KT++ TH E AD V+ +KDGKIE+
Sbjct: 194 KTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 9e-18
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 27/243 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE++NL Y P LK + + + ++G +G+GKSTL+++L +V+P+ G IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1280 IDGVDIS-MIG--LQDLRSRLSIIPQDPMLFQG-TVRTN--LDPLEQHSDQEIWEVINKC 1333
+GV I+ + G L+ LR + +I Q L +V N L L S W +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTS---TWRSL--- 116
Query: 1334 HLAEIVRQD-QRLLDA--------PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
++D + LDA + S GQ+Q V +AR L+++ +I++ DE
Sbjct: 117 -FGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 1385 ASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
AS+D + + +++ TVI H++ D ++ L G+++ +D P
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASE 234
Query: 1442 LED 1444
L D
Sbjct: 235 LTD 237
|
Length = 258 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 1e-17
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 14/232 (6%)
Query: 603 REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI------- 655
R EN KP +K K I G KV +CG GSGKSSL + + G +
Sbjct: 28 RYENNLKPVLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86
Query: 656 -----KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
+ + + + Q + +G+IR N+ E LE L ++ G
Sbjct: 87 KLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGL 146
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+VV E G N S GQ+Q LARA S + I D+ +++D T ++ ++ +M +
Sbjct: 147 DAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFAD 205
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
+TV+ H++ + ADLVLV+ G + + E+L+A ++ ++ +
Sbjct: 206 RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 35/246 (14%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS-- 1274
IE+ENL + Y LK I P + ++G +G GKSTL+++L R+ + P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1275 -GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEV 1329
G++L DG DI I + +LR R+ ++ Q P F ++ N P + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGP-------RLHGI 111
Query: 1330 INKCHLAEIVRQ--------DQ---RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
+K L EIV + D+ RL D+ + G GQ+Q +C+AR L + +L
Sbjct: 112 KDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG-----GQQQRLCIARALAVEPEVL 166
Query: 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437
+LDE T+++D I++ I+E + T++ V H + +D +G+++EY
Sbjct: 167 LLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
Query: 1438 PRQLLE 1443
Q+
Sbjct: 227 TEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-17
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ L+ + Y PM TF + +VG +GSGKSTL+ + P GR+L
Sbjct: 1 VRLDKIRFSYG-EQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
I+GVD + +S++ Q+ LF TV N+ + L
Sbjct: 57 INGVD--VTAAPPADRPVSMLFQENNLFAHLTVEQNVG----------LGLSPGLKLTA- 103
Query: 1339 VRQDQRLLDAPVAEDG---------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+D++ ++ +A G S G+RQ V LARVL++ K +L+LDE A++D
Sbjct: 104 --EDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 1390 ATDNVIQQ---TIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432
A + + ET + TV+ V H+ V+ LD G++
Sbjct: 162 ALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 44/273 (16%), Positives = 97/273 (35%), Gaps = 9/273 (3%)
Query: 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQW 338
L AG + + + + +G S ++L +V + + L +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVL----QGLLLQGS 61
Query: 339 YFGANRIGIRVRSALTVLIYKRSMAI---KFAGPSSGIIINMINVDVERIGDFFLYIHRI 395
++ R+G R+R L + ++ + + F S G + + + DV +I D +
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGL 121
Query: 396 WLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIK 455
+ + + I+ G L +++ + LA + + + +A
Sbjct: 122 FFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGS 181
Query: 456 ATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA-IAFLFWASPT-LVS 513
E+L +R +K E+ L++ + E + K T S
Sbjct: 182 VAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYAL 241
Query: 514 VITFGVCILLKTPLTSGAVLSALATFRILQEPI 546
+ FG +++ L+ G V + L+ L P+
Sbjct: 242 ALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 1220 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I L N + P+ L G++ + V+G G+GKSTL+ A+ ++P+ G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-----TVRTNLDPLEQHSDQEIW---- 1327
+ILIDGVD++ + + L+ + QDP+ G T+ NL E +
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLA--GTAPELTIEENLALAESRGKKRGLSSAL 119
Query: 1328 -EVINKCHLAEIVRQDQRL---LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
E + R L L + S GQRQ + L L +IL+LDE
Sbjct: 120 NERRRSSFRERLARLGLGLENRLSDRI----GLLSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 1384 TASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGK-VLEYDSP 1438
TA++D T + + + E + T + V H + +D + +++L GK VL+
Sbjct: 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234
|
Length = 263 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 34/237 (14%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ L+++ Y LPM T P + + ++G +G+GKSTL+ + P+ G IL
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
I+GVD +S++ Q+ LF TV N+ L ++
Sbjct: 58 INGVD--HTASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKLNAE--------- 105
Query: 1339 VRQDQRLLDAPVAEDG---------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+ ++A A+ G S GQRQ V LAR L++++ IL+LDE +++D
Sbjct: 106 ---QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 1390 ATDNVIQQ---TIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
A + + +E T++ V H D V+ LD G++ S ++LL
Sbjct: 163 ALRAEMLALVSQLCDERKM-TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
I G VA+ G GSGKS+LL I G SG+ I + G+ + +R
Sbjct: 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDL---TDLEDELPPLRRR 77
Query: 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
I G QD ++ L+V+ + LSGGQ+QR+ LARA+ +
Sbjct: 78 I----------------GMVF-QDFALFPH--LTVLENIALGLSGGQQQRVALARALAMD 118
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLYTTHQLEFLDA-ADLVLV 791
DV + D+P SA+D T ++ + LL TV+ TH L+ AD V+V
Sbjct: 119 PDVLLLDEPTSALDPIT-----RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 792 MKDGK 796
++DGK
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 1220 IELENLLVQYNPTLPMV--LKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
IEL+NL Y V LKG++ + GE + +VG +GSGKSTL+ L + P+ G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEF-VAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 1277 RILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD-PLE--QHSDQEIWE 1328
+ +DG DIS + ++L R + + Q L T N++ PL +E E
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
L E V RL + +E S GQ+Q V +AR L +I++ DE T ++D
Sbjct: 120 RAE--ELLERVGLGDRL-NHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDL------VLVLDEGKV 1432
+ T + + +RE + + T++ V H D +L ++ L +GK+
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTH------DPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 17/240 (7%)
Query: 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKST---LIQALFRVV 1271
+E +++ Y + L I+ + P ++G GSGKST LI L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLD-PLE--QHSDQEI 1326
+ +I +DG+ ++ + D+R ++ I+ Q+P TV ++ LE E+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM 120
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
+++ V D +LD +E N S GQ+Q V +A +L + +I++LDE+T+
Sbjct: 121 IKIVRD------VLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1387 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
+D A I + IR+ + + TVI++ H I D VLVLD+GK+L SP ++
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 1220 IELENLLVQY----NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
I+ +N+ +Y T + L + + + ++GR GSGKST+ + + ++ PS
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1276 GRILIDGVDISMIG-LQDLRSRLSIIPQDP------------MLFQGTVRTNLDPLEQHS 1322
G++ +DG+D S L D+R++ ++ Q+P + F G + P E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPENLGIPPEEIRE 123
Query: 1323 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382
+ E + K + E R LL S GQ+Q V +A +L + ++ DE
Sbjct: 124 RVD--ESLKKVGMYEYRRHAPHLL-----------SGGQKQRVAIAGILAMRPECIIFDE 170
Query: 1383 ATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1440
TA +D + + TI+E + T+I + H + ++ D ++V+D GKV+ +P++
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 1441 LLED 1444
+ ++
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 45/225 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWIQTG 673
+ G VA+ G G+GKS+LL+ I G SG I ++G A P S Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLFQEN 80
Query: 674 ------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NL 721
T+ +NI G + G LN + + + VG G L
Sbjct: 81 NLFAHLTVAQNIGLG----------LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLY 775
SGGQ+QR+ LAR + + + D+PFSA+D + ++ L+SQ T+L
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRAEMLALVSQLCDERKMTLLM 185
Query: 776 TTHQLEFLDA---ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
TH E DA AD V+ + +G+I G ++L++ + S
Sbjct: 186 VTHHPE--DAARIADRVVFLDNGRIAAQGSTQELLSGKASAAALL 228
|
Length = 231 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 6e-17
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296
+K ++ T + + ++G GSGKSTL + L ++EP+ G ILI+ + R
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 1297 LSIIPQDP-----------MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1345
+ +I QDP + +R N D + ++I+E + L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL---------- 138
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1405
L + GQ+Q V LAR L+ + +I++ DEA AS+D + + + + E +
Sbjct: 139 LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198
Query: 1406 CTV--ITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455
+ I V I +I + D VLV+ EG+V+E S +L +K + E
Sbjct: 199 QGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 6e-17
Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 14/232 (6%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
I +E++ +Y LK ++ + + GE + +VG GSGKSTL + L ++ P G
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEW-VAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLD-PLEQHSDQEIWEVINKCH 1334
I + G+ +S + D+R ++ ++ Q+P F G TV+ ++ LE E++ +
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVD 122
Query: 1335 LA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
A V + L P G GQ+Q V +A VL + I++LDEAT+ +D
Sbjct: 123 QALRQVGMEDFLNREPHRLSG-----GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 1394 VIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
+ +T+R+ E TV+++ H + D V+V+++G++LE +P ++ +
Sbjct: 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 7e-17
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID------GVDISMIG 1289
+LK IT P G++G +GSGKSTL++ L R++E +I +D G DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1290 LQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLEQH---SDQEIWEVINKC-HLAEIVRQDQ 1343
LR + ++ Q P F ++ N+ PL+ H +EI +++ +C + ++
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403
L++P ++ S GQ+Q + +AR L K ++L++DE T+ ID I++ I E
Sbjct: 145 DRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 1404 SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
+ ++ V+H V D V L G+++E+ S ++
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 7e-17
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 38/254 (14%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+ENL Y L+G++ + + ++GR G+GK+TL++ + +V P GRI+
Sbjct: 4 LEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 1280 IDGVDISMIGLQ-DLRSRLSI--IPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCH 1334
DG DI+ GL R+RL I +P+ +F TV NL D+E E
Sbjct: 62 FDGEDIT--GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD---- 115
Query: 1335 LAEIV--------RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
L E+ R++QR S G++Q++ +AR L+ + ++L+LDE +
Sbjct: 116 LEEVYELFPRLKERRNQR---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 166
Query: 1387 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443
+ I + I+E + T++ V ++ D VL+ G+++ + +LL
Sbjct: 167 LAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
Query: 1444 DNSSSFSKLVAEFL 1457
D + +L
Sbjct: 227 D-----PDVREAYL 235
|
Length = 237 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 9e-17
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
+L G++ + + ++G G+GKSTL++AL + P G + ++GV ++ ++L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1296 RLSIIPQD-----PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1350
+++PQ+ P Q V+ P + E E I LA D L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALA---ATD---LSGLA 129
Query: 1351 AEDGENWSVGQRQLVCLARVLLK------KKRILVLDEATASIDTATDNVIQQTIREETS 1404
D S G++Q V LARVL + R L LDE T+++D A + + R+
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 1405 R-CTVITVAHRIP-TVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1446
V+ V H + D +++L +G+V+ SP+ +L D +
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 9e-17
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 15/233 (6%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+E+L +Y LKG++ + P K ++G G+GKSTL+ L + P GR+
Sbjct: 5 IEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWEVINKCHL 1335
+ G +++ + +RS++ ++ QDP +F TV ++ P+ D++ EV +
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRVEE 121
Query: 1336 A-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
A + VR P + S GQ++ V +A VL ++VLDE A +D
Sbjct: 122 ALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 1395 IQQTIREETSRCTVITVA-HRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445
+ + + ++ + VA H + + D V+VL EG+VL L +++
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-16
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 69/203 (33%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSS 668
G V + G G+GKS+LL ++ G + SG I + GK AYVPQ
Sbjct: 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPKELARKIAYVPQ-- 80
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGIN-LSGGQK 726
AL + L+ +R N LSGG++
Sbjct: 81 -----------------------------ALELLGLA-----HLA---DRPFNELSGGER 103
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQ------KTVLYTTHQ 779
QR+ LARA+ + + D+P S +D AH + L+ LL + KTV+ H
Sbjct: 104 QRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLARERGKTVVMVLHD 157
Query: 780 LEF-LDAADLVLVMKDGKIEQSG 801
L AD V+++KDG+I G
Sbjct: 158 LNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 47/231 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I +G + + G GSGK++ L I I SG I + G+ YV
Sbjct: 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYV 80
Query: 665 PQSSWIQTG-----TIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
Q Q G T+ ENI K+ + +E+L+ L D S
Sbjct: 81 IQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL----------DPS 126
Query: 713 VVGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ- 770
+R + LSGGQ+QR+ +ARA+ ++ + + D+PF A+D T L Q + L +
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL--QEEIKELQKE 184
Query: 771 --KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
KT+++ TH + E L AD + VM G+I Q ++++A+ ++ V
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-16
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 44/213 (20%)
Query: 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF-------- 1268
I LENL ++ P +L + +++ + G +G+GK++L++AL
Sbjct: 390 DHGITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 1269 RVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQE 1325
R+ P+ +L +PQ P L QGT+R L + SD E
Sbjct: 449 RISMPADSALLF-------------------LPQRPYLPQGTLREALCYPNAAPDFSDAE 489
Query: 1326 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENW----SVGQRQLVCLARVLLKKKRILVLD 1381
+ V++K L ++ + W S G++Q + AR+LL K + + LD
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDR---------WDRVLSGGEQQRLAFARLLLHKPKWVFLD 540
Query: 1382 EATASIDTATDNVIQQTIREETSRCTVITVAHR 1414
EAT+++D T++ + Q ++EE TVI+V HR
Sbjct: 541 EATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-16
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1304
GE + G +G GKSTL++ + ++ P+ G +L +G D+S + + R ++S Q P
Sbjct: 28 AGEFIA-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86
Query: 1305 MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364
LF TV NL Q ++ LA +L + S G++Q
Sbjct: 87 ALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL-PDSILTKNI----TELSGGEKQR 141
Query: 1365 VCLARVLLKKKRILVLDEATASIDTAT----DNVIQQTIREETSRCTVITVAH 1413
+ L R L +IL+LDE T+++D + + +I + +RE+ V+ + H
Sbjct: 142 IALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ--NVAVLWITH 192
|
Length = 223 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 44/228 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ + KG V + G GSGKS+LL + G E +I V G+ +R
Sbjct: 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDK----KDILKLR 76
Query: 677 ENI--LFGKDMRQSF----YEEVLEGCALNQDIEMWADGD------------LSVVG--E 716
+ +F Q F + VLE L + L VG +
Sbjct: 77 RKVGMVF-----QQFNLFPHLTVLENVTLAP---VKVKKLSKAEAREKALELLEKVGLAD 128
Query: 717 RG----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
+ LSGGQ+QR+ +ARA+ + V +FD+P SA+D + +M L++
Sbjct: 129 KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAEEG 186
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH++ F + AD V+ M GKI + G E+ + SE RQ
Sbjct: 187 MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ 234
|
Length = 240 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 20/234 (8%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1293
L ++ P + GV+G +G+GKSTLI+ + + P+ G +++DG D++ + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1294 RSRLSIIPQD-PMLFQGTVRTNLD-PLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
R ++ +I Q +L TV N+ PLE EI + + LA + D+ D+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL-LALVGLGDKH--DSY 137
Query: 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CT 1407
+ N S GQ+Q V +AR L ++L+ DEAT+++D AT I + ++E R T
Sbjct: 138 PS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193
Query: 1408 VITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
++ + H + V D V V+ G+++E + ++ S + L +F+R T
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF---SHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG- 1275
KIE+ +L V + VL G+ P ++G +GSGKSTL++ R++E P
Sbjct: 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1276 --GRILIDGVDISMIGLQDLRSRLSIIPQDP------MLFQ----GTVRTNLDPLEQHSD 1323
G + +DG DI + + +LR R+ ++ Q P +F+ G L ++
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+ + + K L + V+ LDAP + S GQ+Q +C+AR L + +L+ DE
Sbjct: 121 ERVRWALEKAQLWDEVKDR---LDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1384 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
TA++D I+ E T++ V H +D V L +G+++E+ R++
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 43/208 (20%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVP--------- 665
+ G+ G+GKS+LL I G + + G I ++G KK +P
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 666 --QSSWIQTGTIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
Q + +REN+ FG ++ R S +E+L+ L+ + R
Sbjct: 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISV-DELLDLLGLDH------------LLNR 127
Query: 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVL 774
LSGG+KQR+ LARA+ + ++ + D+PFSA+D L + L + V+
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE-LKQIKKNLNIPVI 186
Query: 775 YTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
+ TH L + AD ++VM+DG+++ G
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-16
Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 55/245 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------------ 661
I +G + G GSGKS+LL ++ G P G+ + G
Sbjct: 47 IEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 662 --AYVPQS----SWIQTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWAD 708
+ V Q W T+ EN+ FG +M R+ +E LE L Q WAD
Sbjct: 107 RVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQ----WAD 159
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
GE LSGG +QR+ LARA + + + + D+PFSA+D T L + L+ L
Sbjct: 160 ---RKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE-LLELQ 211
Query: 769 SQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
S+ KT+++ +H L E L + + +M+ G+I Q G E+++ + ++ V AH
Sbjct: 212 SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH---- 267
Query: 826 DQVNP 830
NP
Sbjct: 268 --TNP 270
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 42/247 (17%)
Query: 601 DAREENFKK--PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----- 652
++EE KK T+ + D + + +G + G GSGKS+LL I I SG
Sbjct: 25 KSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84
Query: 653 ----------AAIKVHGKK-AYVPQS-SWIQTGTIRENILFG-------KDMRQSFYEEV 693
++ KK + V QS + + T+ EN+ FG + R+ E
Sbjct: 85 GQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA 144
Query: 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LE L E W E LSGG +QR+ LARA+ + D+ + D+ FSA+D
Sbjct: 145 LELVGL----EGWEH---KYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 754 HTGTHLFKQCLMGLLS--QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+ + L+ L + QKT+++ TH L E L D + +MKDG++ Q G E+++ +
Sbjct: 194 LIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
Query: 811 NSELVRQ 817
++ VR+
Sbjct: 253 ANDYVRE 259
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 20/202 (9%)
Query: 1251 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP-QDPMLFQG 1309
G++G G+GK+TL++ + ++ P G++ IDGVD +R ++ ++ + + +
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF-VRRKIGVLFGERGLYARL 90
Query: 1310 TVRTNL---DPLEQHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQL 1364
T R NL L S +EI K +AE+ + Q LD V E +S G +Q
Sbjct: 91 TARENLKYFARLNGLSRKEI-----KARIAELSKRLQLLEYLDRRVGE----FSTGMKQK 141
Query: 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-N 1421
V +AR L+ ILVLDE T+ +D T I++ R + + +H + V
Sbjct: 142 VAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS-SHIMQEVEALC 200
Query: 1422 DLVLVLDEGKVLEYDSPRQLLE 1443
D V+VL +G+V+ S L
Sbjct: 201 DRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 38/253 (15%)
Query: 1220 IELENLLVQY---NPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP-- 1273
+E++NL V + + + G++ GE +G+VG +GSGKS L +A+ ++
Sbjct: 2 LEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEI-LGIVGESGSGKSVLAKAIMGLLPKPN 59
Query: 1274 ---SGGRILIDGVDISMIG---LQDLR-SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEI 1326
GG IL DG D+ + L+ +R +++I QDPM T+L+P+ DQ I
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM-------TSLNPVMTIGDQ-I 111
Query: 1327 WEVINKCHL----AEIVRQDQRLLDA---PVAEDGEN-----WSVGQRQLVCLARVLLKK 1374
EV+ E + LL+ P E S G RQ V +A L
Sbjct: 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1375 KRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGK 1431
++L+ DE T ++D I ++E +I + H + V + D V V+ G+
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231
Query: 1432 VLEYDSPRQLLED 1444
++E ++ ++
Sbjct: 232 IVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
+EN+ Y +L ++ + I + G+ G+GK+TL + L +++ S G IL+
Sbjct: 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDP-LEQHSD--QEIWEVINKCHL 1335
+G I ++ R + + QD LF +VR L L++ ++ V+ L
Sbjct: 60 NGKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL 116
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
+ + L S GQ+Q + +A LL K +L+ DE T+ +D +
Sbjct: 117 YALKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
Query: 1396 QQTIREETSRCTVITVA 1412
+ IRE ++ + V
Sbjct: 166 GELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------- 662
+ I KG VA+ G GSGKS+LL+ ILG + R + ++V G
Sbjct: 25 LSIEKGEFVAIVGPSGSGKSTLLN-ILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRH 83
Query: 663 --YVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V QS + + T EN+ + +E A+ L VG
Sbjct: 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKE----------RRERAEELLERVGLGDR 133
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
LSGGQ+QR+ +ARA+ ++ + + D+P +D+ TG + +M LL +
Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG-----KEVMELLRELNK 188
Query: 771 ---KTVLYTTHQLEFLDAADLVLVMKDGKI 797
T++ TH E + AD ++ ++DGKI
Sbjct: 189 EAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 47/248 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
IE++NL + VLKGI+ + GE + ++G +GSGKSTL++ L + EP G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEV-VVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1279 LIDGVDIS-MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1337
+DG D+ + LR ++ M+FQ + NL P H V+ LA
Sbjct: 60 TVDGEDVGDKKDILKLRRKVG------MVFQ---QFNLFP---HLT-----VLENVTLAP 102
Query: 1338 IV-----RQD-----QRLLDAPV--AEDGENW----SVGQRQLVCLARVLLKKKRILVLD 1381
+ + + LL+ V A+ + + S GQ+Q V +AR L ++++ D
Sbjct: 103 VKVKKLSKAEAREKALELLEK-VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161
Query: 1382 EATASID--TATD--NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436
E T+++D + +V++ E T+I V H + + D V+ +D+GK++E
Sbjct: 162 EPTSALDPELVGEVLDVMKDLAEEGM---TMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218
Query: 1437 SPRQLLED 1444
P + ++
Sbjct: 219 PPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQS- 667
I G VA+ G GSGK++LL I G + R I G+ A +V Q
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 668 SWIQTGTIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ + T+ +N+ FG ++ +V E L Q L + +R
Sbjct: 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ---------LDWLADRYP 134
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQCLMGLLSQKTVLYT 776
LSGGQ+QR+ LARA+ V + D+PF A+DA L + + L L TV T
Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194
Query: 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
Q E L+ AD V+VM G+IEQ G +++ S V
Sbjct: 195 HDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ + +G +A+ G GSGKS+LL I+G + SG + + G+
Sbjct: 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLRRRM 79
Query: 662 AYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI- 719
+ QS + T+ EN+ F EE + L + L VG RG
Sbjct: 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGLRGAE 130
Query: 720 -----NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT 772
LSGG K+R+ LARA+ + ++ ++D+P + +D + + + L T
Sbjct: 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA-SGVIDDLIRSLKKELGLT 189
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ TH L+ A AD + V+ DGKI G E+L A + LVRQ
Sbjct: 190 SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD-PLVRQ 234
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ N+ ++ L + P + ++G +GSGKSTL++ + + +P GRI
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1335
++G D + + +D ++ + Q LF+ TVR N+ + +H +I + + L
Sbjct: 59 LNGQDATRVHARD--RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEE--L 114
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
E+V Q + L D + S GQRQ V LAR L + ++L+LDE ++D +
Sbjct: 115 LELV-QLEGLGDRYPNQ----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169
Query: 1396 QQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452
+ +R+ + T + V H ++ D ++V+ GK+ + SP ++ + ++ F
Sbjct: 170 RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF--- 226
Query: 1453 VAEFL 1457
V FL
Sbjct: 227 VMSFL 231
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-16
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
KI G VA+ G GSGKS++ +++L I I + G A V
Sbjct: 364 FKIPAGKTVALVGRSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYE-EVLEGCALNQD-IEMWADGDLSVVGERGINLS 722
Q+ + TI NI + + + S + E A D I +G +V+GE G+ LS
Sbjct: 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QRI +ARA+ +S + I D+ SA+D + + L L +T L H+L
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLST 541
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQ 810
++ AD +LV++DG+I + G + +L+A
Sbjct: 542 IEKADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 6e-16
Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 23/238 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I LEN+ Y P L+ I + IG++G+ GSGKSTL L ++ P G++L
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1280 IDGVDISMIG-LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
+ G+D LQ +R + I+ Q+P Q RT + L + N C
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPET-QFVGRTVEEDLAFGPE-------NLCLPPIE 112
Query: 1339 VRQDQRLLDAPVAEDG---------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+R + +D +AE G + S GQ Q V LA +L + L+ DE T+ +D
Sbjct: 113 IR---KRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 1390 ATDNVIQQTIREETSRC-TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1446
+ + + I++ + T++ + H + + D D ++V+D GK++ P +L D S
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 7e-16
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 23/282 (8%)
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
L EP+ L SM+ Q V+ R+ E + D ++ IDI+ +A+
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERVFELM--DGPRQQYGNDDRPLQSGRIDIDNVSFAY- 350
Query: 602 AREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK 661
R++N I L+ + VA+ G GSGKS+L S ++G P G I++ G+
Sbjct: 351 -RDDNLVLQNINLS----VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRP 404
Query: 662 -------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708
A V Q + T N+ G+D+ + + LE L + D
Sbjct: 405 LSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPD 464
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
G + +GE+G NLS GQKQ + LAR + + I D+ + +D+ T +Q L +
Sbjct: 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT-EQAIQQALAAVR 523
Query: 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
T++ H+L + AD +LV+ G+ + G ++ L+A Q
Sbjct: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-15
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 20/201 (9%)
Query: 623 GSKVAVCGSVGSGKSS---LLSSIL----GEI-----PRISGAAIKVHGKKAYVPQSSWI 670
G +VA+ G GSGKS+ L++ + GEI PR + A V Q ++
Sbjct: 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564
Query: 671 QTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
GT+R+N+ L+ + + + A++ I G + + E G NLSGGQ+QR+
Sbjct: 565 FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAAD 787
++ARA+ N + I D+ SA+D T ++ + L ++ T + H+L + D
Sbjct: 625 EIARALVRNPSILILDEATSALDPET-----EKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679
Query: 788 LVLVMKDGKIEQSGKYEDLIA 808
++V++ GK+ Q G +E+L A
Sbjct: 680 EIIVLERGKVVQRGTHEELWA 700
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 18/238 (7%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
+ ENL Y V+ ++ GE +G++G G+GK+T + +V P
Sbjct: 1 DMSTLVAENLAKSYKKRK--VVNDVSLEVNSGEI-VGLLGPNGAGKTTTFYMIVGLVRPD 57
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSI--IPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVIN 1331
G+IL+D DI+ + + R+RL I +PQ+ +F+ TV N+ + + ++++ +
Sbjct: 58 SGKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER 116
Query: 1332 KCHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
K L ++ L D+ + S G+R+ V +AR L + ++LDE A +D
Sbjct: 117 KEELDALLEEFHITHLRDSK----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172
Query: 1390 ATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
IQ+ I+ R +IT H + +D D ++ +GKVL SP +++ +
Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G V + G G GK++ L I G + + I + G+ A V Q
Sbjct: 21 LDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGINLS 722
+ + T+ +NI FG +R+ +E+ E A IE ++ + LS
Sbjct: 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-------HLLDRKPKQLS 132
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQKTVLYTTH- 778
GGQ+QR+ L RA+ V++ D+P S +DA + K+ L T +Y TH
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL--GTTTIYVTHD 190
Query: 779 QLEFLDAADLVLVMKDGKIEQSG 801
Q+E + AD + VM DG+I+Q G
Sbjct: 191 QVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 37/243 (15%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+ ENL V Y +L ++ + P K ++G G GKSTL++ R++ P G +
Sbjct: 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRT----------NL-DPLEQHSDQEI 1326
+ ISM+ + L RL+++PQ + +G TVR +L L + +
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV 119
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
+ + + + + D+RL D S GQRQ LA VL + +++LDE T
Sbjct: 120 NQAMEQTRINHLA--DRRLTDL---------SGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
Query: 1387 IDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVIDN------DLVLVLDEGKVLEYDSPR 1439
+D + + +RE T TV+TV H + N D ++VL G V+ +P
Sbjct: 169 LDINHQVELMRLMRELNTQGKTVVTVLHDL-----NQASRYCDHLVVLANGHVMAQGTPE 223
Query: 1440 QLL 1442
+++
Sbjct: 224 EVM 226
|
Length = 255 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 45/229 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAI------KVHGKKAYV 664
++I KG + + G GSGK++ + I GEI I G I ++ K YV
Sbjct: 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVELRRKIGYV 80
Query: 665 PQSSWIQTG-----TIRENIL-------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
Q Q G T+ ENI + K+ + +E+L L
Sbjct: 81 IQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL---------DPAE 127
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
LSGGQ+QR+ +ARA+ ++ + + D+PF A+D T L Q L Q
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL--QEEFKRLQQEL 185
Query: 771 -KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
KT+++ TH + E AD + +MK+G+I Q G ++++ ++ V +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 33/229 (14%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-----VEPSGGRILIDGVDISM--IG 1289
+KGI F K ++G +GSGKST +++L R+ + G+IL G+DI+ I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQR---L 1345
+ ++R + ++ Q P F ++ N+ LE+ V +K L EIV + L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAG------VKDKKVLDEIVETSLKQAAL 149
Query: 1346 LDAPVAED----GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
D V +D S GQ+Q +C+AR + K IL++DE +++D + +++T+ E
Sbjct: 150 WDQ-VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 1402 ETSRCTVITVAH------RIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
T+I V H R +D G ++EYD R + +
Sbjct: 209 LKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-15
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI----SMIGLQDLRSRLS 1298
T PG+ + GR+GSGK+TLI+ + + P G I+++G + I L + R+
Sbjct: 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 1299 IIPQDPMLF-QGTVRTNLD--------PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
+ Q+ LF +VR NL + S + + E++ HL + R RL
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL--LGRLPGRL---- 132
Query: 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ---QTIREETSRC 1406
S G++Q V + R LL R+L++DE A++D I + + E
Sbjct: 133 --------SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GI 183
Query: 1407 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL----------EDNSSSFSKLVAE 1455
++ V+H + V+ D V+VL++G+V ++ ED S +VAE
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAE 243
Query: 1456 F 1456
Sbjct: 244 H 244
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 15/228 (6%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+++ NL Y + ++ + G++G G+GK+T ++ L + P+ G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1335
I+G I + R L PQ LF TVR +L L+ EI E + L
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL--L 117
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
++ + S G ++ + LA L+ +L+LDE T+ +D A+ I
Sbjct: 118 LRVL-GLTDKANKRA----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172
Query: 1396 QQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQL 1441
I E ++I H + + D + ++ +GK+ SP++L
Sbjct: 173 WDLILEVRKGRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SG----GRILIDGVDI-SMIG 1289
VL ++ FP ++G TGSGK+T ++ L R+ + SG G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1290 LQDLRSRLSIIPQDPMLFQGTVRTN-LDPLEQHS--DQEIWEVINKCHLAEIVRQD---Q 1343
+ + R R+ ++ Q P F ++ N L + H ++ + + + L E+ D
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403
RL D+P G GQ+QL+CLAR L +L+LDE T+++D T I++ IR
Sbjct: 156 RLSDSPFRLSG-----GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1404 SRCTVITVAHRIPTV--IDNDLVLVLDEGKVLEYDSPRQLL 1442
R TVI V H + I + L D G+++E QL
Sbjct: 211 DRLTVIIVTHNLAQAARISDRAALFFD-GRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 42/256 (16%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+ N+ + + I+ + + ++G +G GK+TL++ + +PS G IL
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL--------DPLEQHSDQEIWEVI 1330
+DG DI+ + + + ++ Q LF TV N+ + + E +
Sbjct: 64 LDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L D + S GQ+Q V LAR L+ + ++L+LDE +++D
Sbjct: 122 ELVGLEG-------FADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-------NDLVLVLDEGKVLEYDSPRQL 1441
+++ ++E T + V H D +D + V+++G++ + +P ++
Sbjct: 171 LREQMRKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
Query: 1442 LEDNSSSFSKLVAEFL 1457
E ++ F VA+F+
Sbjct: 225 YERPATRF---VADFI 237
|
Length = 352 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 38/197 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA----------YVPQSSWIQ 671
G +A+ G G+GK++L + G I SG+ I ++GK YV Q Q
Sbjct: 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQDVDYQ 83
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGC----ALNQDIE-MWADGDLSVVGERG-INLSGGQ 725
LF S EE+L G A N+ E + D DL + ER ++LSGGQ
Sbjct: 84 --------LFTD----SVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQ 131
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTG---THLFKQC-LMGLLSQKTVLYTTHQLE 781
KQR+ +A A+ S D+ IFD+P S +D L ++ G K V+ TH E
Sbjct: 132 KQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----KAVIVITHDYE 187
Query: 782 FL-DAADLVLVMKDGKI 797
FL D VL++ +G I
Sbjct: 188 FLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 1231 PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMI 1288
P P VLKG+ + + ++G G+GKSTL+ L ++ P G +LIDG +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1289 GLQDLRSRLSIIPQDP--MLFQGTVRTNLD--PLEQH-SDQEIWEVINKCHLAEIVRQDQ 1343
GL + R R+ ++ QDP LF V ++ PL S+ E+ VR+
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR---------VREAL 112
Query: 1344 RLLDAPVAEDG--ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
+ A + S G+++ V +A + + +L+LDE TA +D A + +R
Sbjct: 113 TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1402 ETSRCTVITVA 1412
+ + ++
Sbjct: 173 LRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 3e-15
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 48/184 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + +G A+ G G+GKS+L+ + G SG I V GK+ + + R+
Sbjct: 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKE--------VSFASPRD 71
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVY 736
A I M + LS G++Q +++ARA+
Sbjct: 72 --------------------ARRAGIAM-------------VYQLSVGERQMVEIARALA 98
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL-EFLDAADLVLVMK 793
N+ + I D+P +A+ LFK ++ L V++ +H+L E + AD V V++
Sbjct: 99 RNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156
Query: 794 DGKI 797
DG++
Sbjct: 157 DGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 4e-15
Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 34/257 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--------V 1271
IE+EN Y +K +T + ++G +G GK+TL++++ R+ V
Sbjct: 4 IEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 1272 EPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHS------ 1322
E G+I G DI + + + R ++ ++ Q P F ++ N+ H
Sbjct: 62 E---GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 1323 -DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381
D+ + E + K L + V+ + L+ P G S GQ+Q +C+AR L + +++LD
Sbjct: 119 LDRIVEESLKKAALWDEVKSE---LNKP----GTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 1382 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440
E T+++D I++ + E + T++ V H I I D + + G+++EY R+
Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
Query: 1441 LLEDNSSSFSKLVAEFL 1457
++E +KL E+L
Sbjct: 232 IVERPK---NKLTEEYL 245
|
Length = 250 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKA-------Y 663
+ I G VA+ G G+GKS+LL I G E P R++G + A +
Sbjct: 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEE------VLEGCALNQDIEMWADGDLSVVGE 716
V Q + T+ +NI FG +R+ E V E L Q L + +
Sbjct: 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ---------LEGLAD 132
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTV 773
R LSGGQ+QR+ LARA+ V + D+PF A+DA L + L L T
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRKLHDRLGVTT 191
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
++ TH Q E L+ AD V+V+ G+IEQ G +++ S V
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFV 234
|
Length = 345 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-15
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---- 1275
IE NL V Y V+KG+ P ++G +G GKSTL++ R++E +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1276 -GRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQ----------GTVRTNLDPLEQHS 1322
G + + G +I + ++R + ++ Q P F G L ++
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1323 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382
D+ + + K L + V+ RL D P N S GQRQ + +AR L K +IL++DE
Sbjct: 123 DERVEWALKKAALWDEVKD--RLNDYP-----SNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 1383 ATASIDTATDNVIQQTIREETSRCTVITVAH------RIPTVIDNDLVLVLDEGKVLEYD 1436
TA+ID I++ + E T++ V H R+ +D V L GK++E
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARV-----SDYVAFLYLGKLIEVG 230
Query: 1437 SPRQLLED 1444
R++ E+
Sbjct: 231 PTRKVFEN 238
|
Length = 253 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 5e-15
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 54/254 (21%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+E NL V+ +L ++ T PGE + ++G G+GKSTL++AL + P G +
Sbjct: 3 LEARNLSVRLGGRT--LLDDVSLTLRPGEV-VAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTV-------RTNLDPLEQHSDQEIWEVI 1330
++G ++ +L R +++PQ L F TV R D + +
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 1331 NKC---HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL------KKKRILVLD 1381
+ HLA R +L S G++Q V LARVL R L+LD
Sbjct: 120 AQVDLAHLAG--RDYPQL------------SGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 1382 EATASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDNDL---------VLVLDEG 1430
E T+++D A + + + R+ VI V H DL +++L +G
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH--------DLNLAARYADRIVLLHQG 217
Query: 1431 KVLEYDSPRQLLED 1444
+++ +P ++L
Sbjct: 218 RLVADGTPAEVLTP 231
|
Length = 258 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 59/216 (27%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + KG V + G GSGKS+LL I + I + G K + + + +R+
Sbjct: 21 LTVKKGEVVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINE---LRQ 76
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVVG------E 716
+ +F Q F + VLE L + E A L VG
Sbjct: 77 KVGMVF-----QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA 131
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--------------AHTGTHLFKQ 762
LSGGQ+QR+ +ARA+ N V +FD+P SA+D A G
Sbjct: 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM----- 186
Query: 763 CLMGLLSQKTVLYTTHQLEF-LDAADLVLVMKDGKI 797
T++ TH++ F + AD V+ M DG+I
Sbjct: 187 ---------TMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 5e-15
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 31/236 (13%)
Query: 1220 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
IEL+N+ + + L ++ P + GV+G +G+GKSTLI+ + + P+ GR
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1278 ILIDGVDISMIGLQDLRS-RLSIIPQDPMLFQG-------TVRTNLD-PLE--QHSDQEI 1326
+L+DG D++ + ++LR R I M+FQ TV N+ PLE EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQI----GMIFQHFNLLSSRTVFDNVALPLELAGTPKAEI 117
Query: 1327 WEVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
+ + L E+V D+ D A S GQ+Q V +AR L ++L+ DEAT+
Sbjct: 118 KARVTE--LLELVGLSDKA--DRYPA----QLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 1386 SIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDS 1437
++D AT I + +++ T++ + H + V+ D V V+D G+++E +
Sbjct: 170 ALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 5e-15
Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 44/267 (16%)
Query: 1213 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-- 1270
E+ K+ +E+L V Y LKG++ P + ++G +G GKST ++ L R+
Sbjct: 39 EFDGDAKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96
Query: 1271 ------VEPSGGRILIDGVDISMIG--LQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQ 1320
++ G + +DG DI G L +LR R+ ++ Q P F ++R N+ P +
Sbjct: 97 RIKAARID---GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGP-RK 152
Query: 1321 HSDQEIWEVINKCHLAEIVRQDQR----------LLDAPVAED-----GEN---WSVGQR 1362
H D IN LA ++ +D + L A + ++ +N S GQ+
Sbjct: 153 HGD------INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQ 206
Query: 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV--ID 1420
Q +C+AR L ++++DE +++D + I+ I E TV+ V H + I
Sbjct: 207 QRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266
Query: 1421 NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447
+ + L G+++EYD ++ E+ S
Sbjct: 267 DQTAVFLTGGELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 1220 IELENLLVQY--NPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
+E+ N+ Y L+ I+ + GE + +VG +G GKSTL++ + + P+ G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEF-VALVGPSGCGKSTLLRIIAGLERPTSG 59
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTN-LDPLEQH--SDQEIWEV--- 1329
+L+DG + + Q L TV N LE E E
Sbjct: 60 EVLVDGEPV-----TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
Query: 1330 -INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
+ L+ L S G RQ V LAR L +L+LDE +++D
Sbjct: 115 LLELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRI 1415
T +Q+ + + + TV+ V H I
Sbjct: 164 ALTREQLQEELLDIWRETGKTVLLVTHDI 192
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 6e-15
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE N+ Y L GI + + + +VG +G+GKSTL++ +++ P+ G I
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1280 IDGVDISMIGLQD-----LRSRLSIIPQD-PMLFQGTVRTNLD-PLE--QHSDQEIWEVI 1330
++G D+S L+ LR ++ ++ QD +L V N+ LE +EI + +
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
E+V + P S G++Q V +AR ++ IL+ DE T ++D
Sbjct: 118 PA--ALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
Query: 1391 TDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKV 1432
T I +++ T + VA ++D V+ L+ GK+
Sbjct: 171 TTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 29/237 (12%)
Query: 1220 IELENLLVQYNP-TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
IE++NL +Y L ++ + + ++G GSGKST ++ + ++E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDP-MLFQG-TVRTNLD-PLEQH--SDQEIWEVINKC 1333
+IDG ++ + D+R ++ ++ Q+P F G TV ++ LE +E+ E +N
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN-- 122
Query: 1334 HLAEIV-------RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E+V R+ RL S GQ+Q V +A + + +I++LDEAT+
Sbjct: 123 EALELVGMQDFKEREPARL------------SGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 1387 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1441
+D + +TI+ + + TVI++ H + V +D VLV+ G+V +PR+L
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 8e-15
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 41/212 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG--------------EIPRISGAAIKVHGKK-AYV 664
I KG + + G GSGKS+L +ILG ++ ++S K+ K+ V
Sbjct: 28 IKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 665 PQ---SSWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
Q SS TI E I + GK ++ +E + L + + V+
Sbjct: 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV--LLLLVGVGL----PEEVLNR 141
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQ 770
LSGGQ+QR+ +ARA+ N + I D+P SA+D + ++ LL
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV-----QAQILDLLKKLQEELG 196
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
T+L+ TH L + AD V VM GKI + G
Sbjct: 197 LTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 1220 IELENLLVQYNPTLPMV--LKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I + L ++ V + G++ PGE G++G G+GK+T ++ L ++EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEV-TGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTN---------LDPLEQHSDQEI 1326
+DG D+ + R RL + L+ T R N L E +
Sbjct: 61 FATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT--ARL 117
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E+ ++ + E LLD V +S G RQ V +AR L+ +L+LDE T
Sbjct: 118 EELADRLGMEE-------LLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTG 166
Query: 1387 IDTATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVL 1433
+D +++ IR+ + ++ H + V D V+VL G+V+
Sbjct: 167 LDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 32/240 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+ ENL +Y V+ G++ + GE +G++G G+GK+T + +V+P G+I
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEI-VGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1279 LIDGVDISMIGLQDLRSRLSII--PQDPMLFQG-TVRTNLD-PLEQHSD------QEIWE 1328
L+DG DI+ + + R+RL I PQ+ +F+ TV N+ LE +++ E
Sbjct: 58 LLDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
++ + H+ + + L S G+R+ V +AR L + L+LDE A +D
Sbjct: 117 LLEEFHITHLRKSKASSL-----------SGGERRRVEIARALATNPKFLLLDEPFAGVD 165
Query: 1389 TATDNVIQQTIREETSR--CTVIT--VAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
IQ+ I+ R +IT ++ D ++ EGKVL +P ++ +
Sbjct: 166 PIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDR--AYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 54/218 (24%), Positives = 108/218 (49%), Gaps = 17/218 (7%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPM 1305
++G +GSGKST ++ L R++EP+ G+I IDG +I +L R ++ ++ Q
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81
Query: 1306 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG--ENWSVGQRQ 1363
LF T L + W + E + +L+ E + S G +Q
Sbjct: 82 LFPH--MTILQNTSLGPELLGW---PEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQ 136
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR--EETSRCTVITVAHRIPTVID- 1420
V LAR L + IL++DEA +++D + +Q ++ + T + T++ + H + I
Sbjct: 137 RVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196
Query: 1421 NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458
D ++++ G++++ +P ++L + ++ + V EF+
Sbjct: 197 GDRIVIMKAGEIVQVGTPDEILRNPANEY---VEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 28/130 (21%)
Query: 637 SSLLSSILGEIPRISGAAIKVHGKK--------------AYVPQSSWI-QTGTIRENILF 681
S+LL I G + SG I + G+ V Q + T+REN+ F
Sbjct: 1 STLLKLITGLLQPTSGT-ILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 682 G--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
G + EE LE L ++ E LSGGQKQR+ +ARA+
Sbjct: 60 GLRDKEADARAEEALERVGLPDFLD----------REPVGTLSGGQKQRVAIARALLKKP 109
Query: 740 DVYIFDDPFS 749
+ + D+P +
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKA-----YVPQSSWI 670
KG + G G+GK++ L + GE+ I+G +I+ K A Y PQ +
Sbjct: 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDAL 86
Query: 671 QTG-TIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
T+RE++ F ++++ E +L L A+ +R L
Sbjct: 87 FDELTVREHLRFYARLKGLPKSEIKEEV-ELLLRVLGLTD----KAN-------KRARTL 134
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGG K+++ LA A+ V + D+P S +D + ++ ++ + ++++ TTH ++
Sbjct: 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMD 193
Query: 782 FLDA-ADLVLVMKDGKI 797
+A D + +M DGK+
Sbjct: 194 EAEALCDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 23/231 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I EN+ Y P L+ ++ P + + + G +G+GKSTL++ ++ P+ G+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1280 IDGVDISMIGLQD---LRSRLSIIPQD-PMLFQGTVRTNLD-PLE--QHSDQEIWEVINK 1332
++G D+S + ++ LR ++ ++ QD +L TV N+ PL +EI +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV-- 118
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
+ ++V + P G G++Q V +AR ++ + +L+ DE T ++D
Sbjct: 119 SEVLDLVGLKHKARALPSQLSG-----GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173
Query: 1393 NVIQQTIREETSR--CTVITVAHRIPTVIDNDL---VLVLDEGKVLEYDSP 1438
I + EE +R TV+ H + V N + VL L++G+++ +S
Sbjct: 174 WEIMRLF-EEINRLGTTVLMATHDLELV--NRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-14
Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 42/244 (17%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQD 1292
+ GI+ T + +G+VG +GSGKSTL AL R++ G I DG DI S ++
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRP 360
Query: 1293 LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE--VINKCHLAEIVRQDQRLLDA-- 1348
LR R+ ++ QDP +L P Q I E +++ L+ R DQR+++A
Sbjct: 361 LRRRMQVVFQDPY-------GSLSP-RMTVGQIIEEGLRVHEPKLSAAER-DQRVIEALE 411
Query: 1349 PVAEDGE-------NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
V D +S GQRQ + +AR L+ K +++LDE T+++D + +Q + +
Sbjct: 412 EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQAQVLD 467
Query: 1402 ETSRCTVITVAHRIP-TVIDNDL---------VLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
+ H + I +DL V+V+ +GK++E + + +++
Sbjct: 468 LLRD---LQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524
Query: 1452 -LVA 1454
L+A
Sbjct: 525 ALLA 528
|
Length = 534 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 44/205 (21%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGRILIDGVDISMIGLQD 1292
+LK ++ PGE ++G +G+GKSTL+ AL R G +LI+G + +
Sbjct: 24 LLKNVSGKAKPGEL-TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRS 79
Query: 1293 LRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1351
R + +PQD +L TVR L A++ + L
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-----------------FAAKL----RGL------ 112
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1410
S G+R+ V +A L+ +L LDE T+ +D+++ + +R T+I
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 1411 VAHRIPTVIDN--DLVLVLDEGKVL 1433
H+ + I D +L+L +G+V+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+E+E + + VL+ I + + + ++G +G GKSTL++ + + +P+ G +
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH------SDQEIWEVI 1330
L+DG + + + Q+ L TV N+ LE + + E++
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
LA D + S G RQ V +AR L + ++L+LDE ++D
Sbjct: 116 ELVGLAG-------FEDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEG-----KVLEYDSPR 1439
T +Q + E +R TV+ V H + + D V+VL + LE D PR
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPR 221
|
Length = 248 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKAYVPQSSWIQTGT 674
I G VA+ G G+GKS+LL + G + SG+ ++ K + Q G
Sbjct: 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82
Query: 675 I--------R----ENILFGKDMRQSFY---------EEVLEGCALNQDIEMWADGDLSV 713
I R EN+L G+ R+S + EE A + + + L
Sbjct: 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----LDK 137
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD---AHTGTHLFKQCLMGLLSQ 770
+R LSGGQ+QR+ +ARA+ + + D+P +++D + L K+
Sbjct: 138 AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE--G 195
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKI 797
TV+ + HQ++ + AD ++ +KDG+I
Sbjct: 196 ITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 4e-14
Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 18/244 (7%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIKV----HGKKAY--VPQS 667
I G +V + G GSGKS+LLS+ L G+I +I G + +KA+ +PQ
Sbjct: 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI-QIDGVSWNSVPLQKWRKAFGVIPQK 85
Query: 668 SWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+I +GT R+N+ +GK + ++ V E L IE + V+ + G LS G K
Sbjct: 86 VFIFSGTFRKNLDPYGKWSDEEIWK-VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
Q + LAR+V S + + + D+P + +D T + ++ L + TV+ + H++E +
Sbjct: 145 QLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVILSEHRIEAMLEC 203
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ 846
LV+++ K+ Q + L+ +++ +Q + L K + Q+
Sbjct: 204 QRFLVIEENKVRQYDSIQKLLNEKS--HFKQAISPSDRLKLFPRRNSSKSKRKPRPQIQA 261
Query: 847 ITEE 850
+ EE
Sbjct: 262 LQEE 265
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-------KVHGKK--------AYV 664
I +G VA+ G G+GKS+LL S+ G + SG + K+ GK+ +
Sbjct: 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMI 86
Query: 665 PQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD-----GDLSVVGERG 718
Q + + ++ EN+L G+ S + + G +D D G L +R
Sbjct: 87 FQQFNLVPRLSVLENVLLGRLGYTSTWRSLF-GLFSKEDKAQALDALERVGILDKAYQRA 145
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQKT 772
LSGGQ+QR+ +ARA+ + + D+P +++D + +M +L T
Sbjct: 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK-----VMDILKDINQEDGIT 200
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
V+ HQ++ AD ++ +K G+I G +L + E+
Sbjct: 201 VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243
|
Length = 258 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV------PQSSWIQ 671
+ + G VA+ G G+GKS+LL+ I G I SG+ IKV+ + P S Q
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS-IKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 672 TG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
T+R+NI G + + + + D +R LSGG
Sbjct: 78 ENNLFAHLTVRQNIGLG--LHPGLKLNAEQQEKVVDAAQQVGIADYL---DRLPEQLSGG 132
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QKTVLYTTH 778
Q+QR+ LAR + + + + D+PFSA+D L ++ ++ L+ Q+T+L TH
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDP-----LLREEMLALVKQLCSERQRTLLMVTH 187
Query: 779 QLEFLDA-ADLVLVMKDGKIEQSGK 802
L A A + V+ GKI+
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-LGEIP---RISGAAIKVHGKKAYVPQSSWIQTG 673
+++ G VA+ G GSGK++LL I L E P I I + ++ Q I+
Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ- 82
Query: 674 TIRENILFGKDMRQSF--------YEEVLEGCAL-----NQDIEMWADGDLSVVGERGIN 720
+R+++ F + Q+F E ++EG + ++ A L+ VG G
Sbjct: 83 -LRQHVGF---VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138
Query: 721 ------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-TGTHLFKQCLMGLLSQK-T 772
LSGGQ+QR+ +ARA+ +V +FD+P SA+D G L + L +K T
Sbjct: 139 TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL--NTIRQLAQEKRT 196
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
++ TH++ F D AD + M G+I + G + L AD RQ
Sbjct: 197 MVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQ 242
|
Length = 250 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 6e-14
Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 55/371 (14%)
Query: 1116 FHNCGTMEWLCLRINLLFNFAFFLVLIIL---VTL-PRSAIDPSLA----GLAATYGLNL 1167
H GT W+C F + LI VT+ + +D A L L
Sbjct: 539 LHAVGTFTWVCT--------PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPL 590
Query: 1168 NVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLV 1227
N+L VI ++ +S++R+ F + P I+ P +S I + N
Sbjct: 591 NILPM-VISSIVQAS---VSLKRLRIFLSHEELEPDSIERRTIKPGEGNS--ITVHNATF 644
Query: 1228 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1287
+ LP L GIT + P + VVG+ G GKS+L+ AL ++ G + + G
Sbjct: 645 TWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----- 699
Query: 1288 IGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHL---AEIVRQ 1341
++ +PQ + ++R N+ L + Q +V+ C L EI+
Sbjct: 700 --------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQ---QVLEACALLPDLEILPS 748
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT-ATDNVIQQTIR 1400
R + E G N S GQ+Q V LAR + I + D+ +++D ++ + I
Sbjct: 749 GDR---TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805
Query: 1401 EE--TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458
E T I V H I + D+++V+ GK+ E S ++LL+ + + AEFLR
Sbjct: 806 PEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGA-----FAEFLR 860
Query: 1459 RTSKSNRNRDL 1469
+ + L
Sbjct: 861 TYAPDEQQGHL 871
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 20/232 (8%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE +L Y+ + L I P +I V+G G+GKSTL + +++P+ G +L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWE--VINKC 1333
I G I+ ++++R + ++ Q+P +F TV ++ P+ D+E V +
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 1334 HLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
H+ + + L D P + S G+++ V +A V+ + ++LVLDE TA +D
Sbjct: 123 HMLGL----EELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
Query: 1393 NVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
+ + + ET TVI H++ V + D + V+D+G+++ Y + ++
Sbjct: 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 6e-14
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 18/201 (8%)
Query: 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281
L+N+ ++ + +L + T K ++G +GSGKSTL+ + + + G++ ++
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 1282 GVDISMIGLQD----LRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVINKC 1333
G + + + R +L + Q+ L + TV NLD L+ S +E E +
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
E V + + L + E S G++Q V LAR +LK +++ DE T S+D +
Sbjct: 119 --LEKVGLNLK-LKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 1394 VIQQTIREETSRC-TVITVAH 1413
+ + E T+I V H
Sbjct: 172 EVLDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-14
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 1253 VGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMIGLQD--LRSRLSIIPQDPM 1305
+G +G GKST ++ R+ + G + IDG+D+ + LR+++ ++ Q P
Sbjct: 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96
Query: 1306 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL------LDAPVAEDGENWSV 1359
F ++ N+ + + NK L EIV + L + + S
Sbjct: 97 PFPKSIYDNV----AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG 152
Query: 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVI 1419
GQ+Q +C+AR + K +L++DE +++D NVI+ I+E T+I V H +
Sbjct: 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAK 212
Query: 1420 D-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
+D V G+++EY++ +++ ++ SS +K
Sbjct: 213 KVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTK 245
|
Length = 251 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 25/207 (12%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
LK ++ P ++IG++GR G+GKSTL++ L + P G + + G S++GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1296 RLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVINKCH-LAEIVRQDQRLLDAPVA 1351
+P L T R N+ L S +EI E I++ +E+ +D PV
Sbjct: 93 -GGF---NPEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL----GDFIDLPV- 140
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC-TVIT 1410
+ +S G + + A + IL++DE A D A Q+ +RE + TVI
Sbjct: 141 ---KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL 197
Query: 1411 VAHRIPTVIDN-DLVLVLDEGKVLEYD 1436
V+H ++ D LVL++GK+
Sbjct: 198 VSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 31/267 (11%)
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPIT----EPTSKASDVAIDIEAGEYAWDAREENFKK 609
S I + + L + + KP+ P + + ++ E +D K
Sbjct: 282 SRIKRLE-KLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKD 340
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVPQ-- 666
+ +I +G ++A+ G G+GKS+LL + GE+ +SG K Y Q
Sbjct: 341 LS------FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR 394
Query: 667 SSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T+ E + D + L + + LSGG+
Sbjct: 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGE 444
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD 784
K R+ LA+ + ++ + D+P + +D + L LL + TVL +H FLD
Sbjct: 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEGTVLLVSHDRYFLD 500
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQ 810
A + +++D E G YED + +
Sbjct: 501 RVATRIWLVEDKVEEFEGGYEDYLEQK 527
|
Length = 530 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 7e-14
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 29/205 (14%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP----------QS-SWIQTGTIRE 677
G G GK++LL + G + +I + G+ VP QS + T+ E
Sbjct: 3 GPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEE 61
Query: 678 NILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
N+ FG MR+ E VLE L Q E + LSGGQ+QR+ LAR
Sbjct: 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFAD--------RKPHQLSGGQQQRVALAR 113
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAADLVL 790
A+ + + D+P SA+D + L + Q T ++ TH Q E + +D +
Sbjct: 114 ALVFKPKILLLDEPLSALDKKL-RDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 791 VMKDGKIEQSGKYEDLIADQNSELV 815
+M+ GKI Q G E++ + + V
Sbjct: 173 IMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 7e-14
Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 47/221 (21%)
Query: 633 GSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------AYVPQS----SWIQ 671
GSGKS+L+ + I G I V GK + V QS
Sbjct: 64 GSGKSTLVRLLNRLIEPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR- 121
Query: 672 TGTIRENILFG-------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
T+ EN+ FG K R+ E LE L +AD E LSGG
Sbjct: 122 --TVLENVAFGLEVQGVPKAEREERALEALELVGLEG----YAD---KYPNE----LSGG 168
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQL-E 781
+QR+ LARA+ ++ D+ + D+ FSA+D T + + L+ L + +KT+++ TH L E
Sbjct: 169 MQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE-LLELQAKLKKTIVFITHDLDE 227
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
L D + +MKDG+I Q G E+++ + ++ VR +
Sbjct: 228 ALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 8e-14
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 41/244 (16%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I++ +L V++ T VL G+ + +G+VG G+GK+TL++A+ + P+ G +L
Sbjct: 4 IDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVR-----------TNLDPLEQHSDQEIW 1327
+ G D+ + + R++ +PQD L F+ VR + D + +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 1328 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
+ + +A+ D PV S G+RQ V LAR L + +L+LDE TAS+
Sbjct: 122 RAMERTGVAQFA-------DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 1388 DTATDNVIQQTIRE--------ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSP 1438
D I +R + + T + H + D +++L +G+V P
Sbjct: 171 D------INHQVRTLELVRRLVDDGK-TAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223
Query: 1439 RQLL 1442
+L
Sbjct: 224 ADVL 227
|
Length = 402 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 39/232 (16%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
E+ NL V Y + +L+G++ P + V+GR G GK+TL++ L ++ G I +
Sbjct: 2 EVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1281 DGVDISMIGLQDLRSRLSI--IPQDPMLF-QGTVRTNL----DPL---EQHSDQEIWEVI 1330
DG DI+ + + R+R I +PQ +F + TV NL L + EI+E+
Sbjct: 60 DGEDITKLPPHE-RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF 118
Query: 1331 NKCHLAEIVRQDQRLLDAPVAED-----GENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
PV ++ G + S GQ+Q + +AR L+ + ++L+LDE T
Sbjct: 119 ------------------PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
Query: 1386 SIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434
I + I + IR + ++ V + + D V++ G+V+
Sbjct: 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 47/231 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+ + G A+ G G+GKS+L+ + G P SG I + GK A
Sbjct: 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIAT 87
Query: 664 VPQ-SSWIQTGTIRENILFG------------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
V Q S + ++ ENI G K MR+ E+L L+ D +
Sbjct: 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-ARELLARLGLDIDPD------ 140
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
++VG +LS Q+Q +++ARA+ ++ V I D+P +A+ LF + L +Q
Sbjct: 141 -TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQ 194
Query: 771 -KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN-SELVRQM 818
++Y +H+L E + AD + V++DG++ + A+ + ELVR M
Sbjct: 195 GVAIIYISHRLDEVFEIADRITVLRDGRVVGTR---PTAAETSEDELVRLM 242
|
Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 47/237 (19%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS-RLSIIPQDPMLF 1307
++G +GSGKSTL++ + R++EP+ G++LIDG DI+ + L++LR ++S++ Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1308 -QGTVRTNLD-PLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN-----WSV 1359
TV N+ LE Q + E + L+ E E+ S
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAERE-----------ERAAEALELVGLEGWEHKYPDELSG 163
Query: 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE------TSRCTVITVAH 1413
G +Q V LAR L IL++DEA +A D +I++ +++E + T++ + H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1414 ------RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSN 1464
R+ D + ++ +G++++ +P ++L + ++ + V EF R ++
Sbjct: 220 DLDEALRL-----GDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFFRGVDRAK 268
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-13
Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 30/257 (11%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
+ G I +++L V Y VL ++ + + ++G++G GK+TL++A+ V+ +G
Sbjct: 2 ACGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1276 --GRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINK 1332
GRI I D++ + L+++ Q+ LF V N+ + K
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM------PK 111
Query: 1333 CHLAEIVRQDQRL--LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
+AE V +L L A S G +Q + +AR + + +L+LDE +++D
Sbjct: 112 ADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171
Query: 1391 TDNVIQQTIREETSR-------CTVITVAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1442
I+ +REE + T++ V H + + D ++ +G++ + P+ L
Sbjct: 172 ----IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227
Query: 1443 EDNSSSFSKLVAEFLRR 1459
+ + F AEFL
Sbjct: 228 DAPADGF---AAEFLGA 241
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 20/205 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+ NL M+ +G++ T GE V G G GK+TL++ L ++ P G +
Sbjct: 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQ-VTGPNGIGKTTLLRILAGLLRPDSGEV 57
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVINKCHL 1335
+G ++ + R+ L + + + + NL + + + I + + L
Sbjct: 58 RWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL 117
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
D P A+ S GQ++ + LAR+ L + + +LDE T ++D A ++
Sbjct: 118 TGFE-------DLPAAQ----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 1396 QQTIREETSR--CTVITVAHRIPTV 1418
+R +R ++T + V
Sbjct: 167 AGLLRAHLARGGIVLLTTHQDLGLV 191
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 50/233 (21%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL 680
G +++ GS GSGKS+ L I E P S +I+V+G++ I+ ++ L
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEE--------IRLKRDKDGQL 80
Query: 681 FGKDMRQ---------------------SFYEEVLE------GCALNQDIEMWADGDLSV 713
D RQ + E V+E G + + IE A+ L+
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIER-AEKYLAK 139
Query: 714 VG--ERG----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
VG E+ +LSGGQ+QR+ +ARA+ +V +FD+P SA+D + K +M
Sbjct: 140 VGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQD 197
Query: 768 LSQ--KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L++ +T++ TH++ F D + V+ + GKIE+ G E + + S ++Q
Sbjct: 198 LAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQ 250
|
Length = 256 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-13
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 28/147 (19%)
Query: 674 TIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQR 728
T+ EN+ FG M+++ E V+E + Q L +R LSGGQ+QR
Sbjct: 102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQ---------LEEFAQRKPHQLSGGQQQR 152
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQK---TVLYTTH-QLEF 782
+ +ARAV + V + D+ SA+D L KQ L L +K T ++ TH Q E
Sbjct: 153 VAIARAVVNKPKVLLLDESLSALDY----KLRKQMQNELKALQRKLGITFVFVTHDQEEA 208
Query: 783 LDAADLVLVMKDGKIEQSGK----YED 805
L +D ++VM+DG+IEQ G YE+
Sbjct: 209 LTMSDRIVVMRDGRIEQDGTPREIYEE 235
|
Length = 375 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG---------KKAY--VPQS 667
+ KG V + G G GK++LL I G E + I G K+ Y V QS
Sbjct: 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYGIVFQS 84
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------N 720
+ T+ +NI +G R EV + + L +VG G
Sbjct: 85 YALFPNLTVADNIAYGLKNRGMGRAEV------AERVAEL----LDLVGLPGSERKYPGQ 134
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKTVLYTT 777
LSGGQ+QR+ LARA+ ++ + + D+P SA+DA HL + + L L T++ T
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-RTEIRQLQRRLGVTTIMVTH 193
Query: 778 HQLEFLDAADLVLVMKDGKIEQSG 801
Q E L AD ++VM G IEQ G
Sbjct: 194 DQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 2e-13
Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 16/222 (7%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+++ N + L L I P + +VG+ G GKS+L+ A+ ++ G++
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 1280 IDGVDISMIGLQDLRSR----LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1335
+ S + RSR ++ Q P L TV N+ + Q V + C L
Sbjct: 60 WSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSL 119
Query: 1336 AEIVRQDQRLL----DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT-A 1390
+ D LL + E G N S GQRQ +C+AR L + I+ LD+ +++D
Sbjct: 120 ----QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEG 1430
+D+++Q+ I + + + T++ V H++ + D ++ + +G
Sbjct: 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 39/213 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
IE++NL + VLKGI T GE + ++G +GSGKSTL++ + + EP G I
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEV-VVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1279 LIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
+IDG+ + + +LR ++ M+FQ + NL P H V+ LA
Sbjct: 58 IIDGLKLTDDKKNINELRQKVG------MVFQ---QFNLFP---HLT-----VLENITLA 100
Query: 1337 EIVRQDQ----------RLLDAPVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLD 1381
I + LL+ D + S GQ+Q V +AR L ++++ D
Sbjct: 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
Query: 1382 EATASIDTATDNVIQQTIREET-SRCTVITVAH 1413
E T+++D + +++ T++ V H
Sbjct: 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTH 193
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 37/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSS-------------ILGE-IPRISGAAIKVHGKK-- 661
+ I KG + G GSGKS+ + I GE I + S ++ +K
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 662 AYVPQS-SWIQTGTIRENILFGKDM----RQSFYEEVLEGCALNQ-DIEMWADGDLSVVG 715
V Q + TI +N G ++ Q E+ LE L +E +
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALE--LLKLVGLEEYEH------- 124
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQKT 772
LSGG +QR+ LARA+ + D+ + D+ FSA+D + K+ L QKT
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKT 182
Query: 773 VLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+++ TH L E + D +++MK G+I Q G ++++ + +E V +
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEE 228
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---- 1270
S K+E L Y L I+ F + ++G +G GKST ++ L R+
Sbjct: 2 ASPPKMEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 1271 -VEPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1327
G IL+DG +I + + +LR R+ ++ Q P F ++ N+ +
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVN 114
Query: 1328 EVINKCHLAEIVRQDQR---LLDA---PVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381
V +K +LAE V + R L D + E S GQ+Q +C+AR L + +L++D
Sbjct: 115 GVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 1382 EATASIDTATDNVIQQTIREETSRCTVITVAH 1413
E +++D I++ I E +R T+I V H
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-13
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 61/217 (28%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+EL + ++ L G++ + GE ++G G+GKSTL++ L + +P G
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEV-HALLGENGAGKSTLMKILSGLYKPDSGE- 56
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
+L G + P + I +
Sbjct: 57 --------------------------ILVDGKEVSFASPRDAR-RAGI----------AM 79
Query: 1339 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA-TDNVIQQ 1397
V Q L SVG+RQ+V +AR L + R+L+LDE TA++ A + + +
Sbjct: 80 VYQ----L-----------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-K 123
Query: 1398 TIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1432
IR ++ VI ++HR+ V + D V VL +G+V
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-13
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1310
++G +G GK+TL++ L +P G I++DG D++ + LR ++++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 1311 VRTNLD-PLEQHS------DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
V N+ L+ + E + L E + L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR--EETSRCTVITVAHRIPTVID- 1420
V LAR L+ K +IL+LDE +++D + +Q ++ +E T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1421 NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
+D + ++ +GK+ + +P ++ E+ ++ F VA F+
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF---VARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 42/209 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY-VPQSSWIQ----T 672
++I G V + G GSGK++LL+ I G + + ++KV G++ Y + +Q
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQEGSLKVLGQELYGASEKELVQLRRNI 84
Query: 673 G------------TIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLS 712
G T R+N+ +++ + +LE L ++ +
Sbjct: 85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH---- 140
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
NLSGGQKQR+ +ARA+ + + D+P +A+D+ +G + + LM L+++
Sbjct: 141 -------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE--LMQKLAREQ 191
Query: 772 --TVLYTTHQLEFLDAADLVLVMKDGKIE 798
T+L TH LD AD ++ M+DGK+
Sbjct: 192 GCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 23/207 (11%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
VL I+ + G +G G+GK+T ++ + +++P G I DG +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALR 72
Query: 1296 RLSIIPQDPMLFQG-TVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1351
R+ + + P + T R NL L + I EV++ L + ++ +
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK------- 125
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1410
+S+G +Q + +A LL +L+LDE T +D +++ I + TV+
Sbjct: 126 ----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 1411 VAH---RIPTVIDNDLVLVLDEGKVLE 1434
+H I V D + ++++GK++E
Sbjct: 182 SSHLLSEIQKVADR--IGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY--------VPQSSW 669
+ G KVA+ G GSGKS++L IL + I I+V G++ Y + +
Sbjct: 21 FSVAAGEKVALIGPSGSGKSTILR-ILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79
Query: 670 IQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDI-----EMWADGDLSVVG---- 715
+R I F ++ + V E L + E A L +VG
Sbjct: 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK 139
Query: 716 --ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-----MGLL 768
LSGGQ+QR+ +ARA+ V +FD+ SA+D L + L +
Sbjct: 140 ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP----ELVGEVLNVIRRLASE 195
Query: 769 SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
T+L TH++ F + AD V G+I + GK +++ E R
Sbjct: 196 HDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERTR 244
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 14/215 (6%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMIGLQDL 1293
VLKG+ F G+VG G GKSTL L ++ P G +L G +D S GL L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 1294 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW----EVINKCHLAEIVRQDQRLLDAP 1349
R +++ + QDP Q T++D S + + E+ + A + Q P
Sbjct: 76 RQQVATVFQDPE--QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP 133
Query: 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCT-V 1408
+ + S GQ++ V +A L+ + R L+LDE TA +D A + IR ++ V
Sbjct: 134 I----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHV 189
Query: 1409 ITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
I +H I + + +D V VL +G++L + +P ++
Sbjct: 190 IISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
Length = 271 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 33/196 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVP 665
K+ G K+ + G G+GKS+L+ ++ + G I++ G +P
Sbjct: 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRSSLTIIP 88
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
Q + +GTIR N+ D + +E + G AL V E G+NLS GQ
Sbjct: 89 QDPTLFSGTIRSNL----DPFDEYSDEEIYG-ALR-------------VSEGGLNLSQGQ 130
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
+Q + LARA+ V + D+ +++D T L ++ + + T+L H+L +
Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIAHRLRTIID 189
Query: 786 ADLVLVMKDGKIEQSG 801
D +LVM G++++
Sbjct: 190 YDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 1254 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVR 1312
G G+GKSTL L R+ G+I + G D+ L RL ++ Q P L +VR
Sbjct: 34 GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVR 92
Query: 1313 TNLD---PLEQHSDQEIWEVINKCHLAEIVRQD--QRLLDAPVAEDGENWSVGQRQLVCL 1367
NL L S E I + R +R D V E + G R+ V +
Sbjct: 93 QNLRYHAALHGLSRAEARARIA----ELLARLGLAERA-DDKVRE----LNGGHRRRVEI 143
Query: 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVL 1425
AR LL + +L+LDE T +D A+ I +R +V+ H + + +D ++
Sbjct: 144 ARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLV 203
Query: 1426 VLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
VL G+VL + +L ++ + L A FL T
Sbjct: 204 VLHRGRVLADGAAAELR--GATGGADLEAAFLALT 236
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-13
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 62/233 (26%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKK--------------- 661
+ G + + G GSGKS+L +++G E RI+ + + G+
Sbjct: 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGK 91
Query: 662 --AYVPQ---SSWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
A + Q +S TI + I L GK R + +E L
Sbjct: 92 RIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL--------------L 137
Query: 712 SVVG----ERGIN----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763
VG ER LSGG +QR+ +A A+ + I D+P +A+D T +
Sbjct: 138 EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT-----QAQ 192
Query: 764 LMGLLSQ------KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIAD 809
++ LL VL+ TH L + + AD V+VM G+I ++G E+++++
Sbjct: 193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 35/231 (15%)
Query: 1224 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1283
L V LP I E G+ G +G+GKSTL++ + + +P GG I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 1284 DISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQHSDQEIWEVINK 1332
L D R ++++ PQ ++FQ VR NL L++ ++E +
Sbjct: 60 V-----LFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----R 109
Query: 1333 CHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
+ E++ LL+ A+ S G++Q V LAR L + +L+LDE +++D A
Sbjct: 110 ISVDELLDLLGLDHLLNRYPAQ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 1391 TDNVIQQTIREETSR--CTVITVAH---RIPTVIDNDLVLVLDEGKVLEYD 1436
+ +++ VI V H + D ++V+++G++
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR--IVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 19/215 (8%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
+E ENL + + ++ T GE + G G+GK+TL++ L ++ P G
Sbjct: 2 MLEAENLSCERGER--TLFSDLSFTLNAGEALQ-ITGPNGAGKTTLLRILAGLLRPDAGE 58
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL----DPLEQHSDQEIWEVINKC 1333
+ G I + ++ L + Q + + T NL + IWE + +
Sbjct: 59 VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV 118
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
LA L D PV S GQ++ V LAR+ L + +LDE ++D
Sbjct: 119 GLA-------GLEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1428
++ + ++ ++ + P I + + LD
Sbjct: 168 LLTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 6e-13
Identities = 60/231 (25%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 1220 IELENLLVQYNPTLPM-VLKGITCTFPGEKKIGVVGRTGSGKST---LIQALFRVVEPSG 1275
+E+ENL+ +Y + L G++ + + + ++G+ GSGKST LI LF E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE--- 61
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLEQHSDQEIWEVINKC 1333
G++ IDG ++ + +LR ++ ++ Q+P TV ++ ++ E+I +
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
A + +LD E S GQ+Q V +A ++ + I++LDE+T+ +D
Sbjct: 122 DEALLAVN---MLDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 1394 VIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1442
I + I E E + TV+++ H + +D +LV+ G++++ +P +L
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-13
Identities = 106/483 (21%), Positives = 184/483 (38%), Gaps = 45/483 (9%)
Query: 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020
+L I + P+ + S+R+L ++D + RL L A+I L
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAA 140
Query: 1021 LMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHH 1080
++ + ++F L +V + ++IW V AR + ++ ARE + IL
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYK-----HMAAARETEDKLQNDYQTILEG 195
Query: 1081 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV 1140
E + ++ + + + W N++ L
Sbjct: 196 RKELTLNRERAEYVHNN-LYIPDAQEYRHHIIRANTFHLLAVNW----SNIML-----LG 245
Query: 1141 LIILVTLPRSAIDPSLAG--LAATYGLNLNVLQA---WVIWNLCNVENKMISVERILQFT 1195
LI LV A+ A +AAT L L L+ + L + ++ +I +
Sbjct: 246 LIGLVFW--LALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLE 303
Query: 1196 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1255
P +A + P+W +EL N+ Y + I T + + ++G
Sbjct: 304 LAPYKADF--PRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGG 357
Query: 1256 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1315
GSGKSTL L + +P G IL+DG +S L+D R S + D LF +
Sbjct: 358 NGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417
Query: 1316 DPLEQHSDQ--EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373
Q ++ + E+ +K L D R + + S GQ++ + L LL+
Sbjct: 418 KASPQLIEKWLQRLELAHKTSL-----NDGRFSNLKL-------STGQKKRLALLLALLE 465
Query: 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRC--TVITVAHRIPTVIDNDLVLVLDEGK 1431
++ ILVLDE A D A Q + T+ ++H I D +L + G+
Sbjct: 466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQ 525
Query: 1432 VLE 1434
+ E
Sbjct: 526 LSE 528
|
Length = 546 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 7e-13
Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 24/219 (10%)
Query: 1248 KKIGVVGRTGSGKSTLIQALFRV---VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1304
K ++G +G GKST ++ R+ + G + I+G D+ + LR + ++ Q P
Sbjct: 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP 88
Query: 1305 MLFQGTVRTN------LDPLEQHSDQE---IWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355
+F ++ N L + ++ D+E + + + K L E V+ +L +A G
Sbjct: 89 NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD--KLKQNALALSG- 145
Query: 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1415
GQ+Q +C+AR L K ++L+LDE T+++D + VI++ ++E + ++I V H +
Sbjct: 146 ----GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
Query: 1416 PT---VIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
V D L G+++E+ ++ E+ +K
Sbjct: 202 QQGKRVADYTAFFHL--GELIEFGESKEFFENPKQEKTK 238
|
Length = 246 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1304
GE K+ + G +G GKSTL++ + ++ P+ G +L +G DIS + + R ++S Q P
Sbjct: 32 AGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90
Query: 1305 MLFQGTVRTNLD-PLE---QHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWS 1358
LF TV NL P + Q D I+ L ++ R +L +AE S
Sbjct: 91 TLFGDTVYDNLIFPWQIRNQQPDPAIF-------LDDLERFALPDTILTKNIAE----LS 139
Query: 1359 VGQRQLVCLARVLLKKKRILVLDEATASID----TATDNVIQQTIREETSRCTVITVAH 1413
G++Q + L R L ++L+LDE T+++D + +I + +RE+ V+ V H
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ--NIAVLWVTH 196
|
Length = 225 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 8e-13
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---KVHGKKAYVPQ--------S 667
++ G A+ G G+GK++LLS + GE P SG + GK + + S
Sbjct: 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112
Query: 668 SWIQ-----TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NL 721
S + T+R+ +L G Y+E L L + + +R +L
Sbjct: 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL 172
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTH 778
S G+++R+ +ARA+ + ++ I D+P +D L L + +L+ TH
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLI-AREQLLNRLEELAASPGAPALLFVTH 231
Query: 779 QL-EFLDAADLVLVMKDGKIEQSGK 802
E L++K+G++ GK
Sbjct: 232 HAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 8e-13
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQS- 667
I G VA+ G GSGK++LL I G + SG I+ HG +V Q
Sbjct: 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGFVFQHY 83
Query: 668 SWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDI----EMWADGDLSVVGER-GIN 720
+ + T+ +NI FG + R+ E A+ + EM L+ + +R
Sbjct: 84 ALFRHMTVFDNIAFGLTVLPRR----ERPNAAAIKAKVTQLLEMV---QLAHLADRYPAQ 136
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGGQKQR+ LARA+ + + D+PF A+DA L ++ L L + T ++ TH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL-RRWLRQLHEELKFTSVFVTH 195
Query: 779 -QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
Q E ++ AD V+VM G IEQ+G + + + + V
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFV 233
|
Length = 353 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 29/206 (14%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-AYVP----------QS 667
I +G + G G GK++LL I G E P + I + GK +P Q+
Sbjct: 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQN 80
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQ 725
+ T+ ENI FG +++ E+ E A E L R + LSGGQ
Sbjct: 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVA-----EALDLVQLEGYANRKPSQLSGGQ 135
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----TVLYTTH-QL 780
+QR+ +ARA+ + V + D+P A+D + + L L QK T ++ TH Q
Sbjct: 136 QQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE-LKRL--QKELGITFVFVTHDQE 192
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDL 806
E L +D + VM GKI+Q G E++
Sbjct: 193 EALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-12
Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 29/222 (13%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS--RLSIIPQDPMLFQG 1309
++G +GSGKST+++ L R++EP+ G++LIDGVDI+ I +LR R I M+FQ
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI----AMVFQS 114
Query: 1310 TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR--LLDAPVAEDGENW--------SV 1359
L P D + + LA I +++R LDA EN+ S
Sbjct: 115 FA---LMPHMTVLDNTAFGM----ELAGINAEERREKALDALRQVGLENYAHSYPDELSG 167
Query: 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC--TVITVAHRIPT 1417
G RQ V LAR L IL++DEA +++D +Q + + ++ T++ ++H +
Sbjct: 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE 227
Query: 1418 VID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458
+ D + ++ G+V++ +P ++L + ++ + V F R
Sbjct: 228 AMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY---VRTFFR 266
|
Length = 400 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 49/241 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW------IQTG 673
+ +G + + G GSGKS+L + G +P S +I G+ + IQ
Sbjct: 314 LREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 674 ------------TIRENI--------LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
T+ + + R++ E+LE L +
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF---------- 422
Query: 714 VGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-----QCLMGL 767
+R + LSGGQ+QR+ +ARA+ + I D+P SA+D + Q +GL
Sbjct: 423 -LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481
Query: 768 LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
T L+ +H L + AD V VM DG+I + G E + + R++ A D
Sbjct: 482 ----TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVPKPD 537
Query: 827 Q 827
Sbjct: 538 P 538
|
Length = 539 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 46/219 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQSSWI--- 670
+ KG + G G+GKS+L+ I G E P + G + + K I
Sbjct: 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87
Query: 671 -------QTGTIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ T+ EN+ K + E+LE L + +
Sbjct: 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA-------- 139
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH----LFK--QCLMGLLSQ 770
LSGGQKQR+ +ARA+ +N V + D+ SA+D T T L + +GL
Sbjct: 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-TQSILALLRDINRELGL--- 192
Query: 771 KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
T++ TH++E + D V VM+ G++ + G E++ A
Sbjct: 193 -TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 51/207 (24%)
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS------- 668
+ I KG A+ G GSGKS+LL+ I+G + + + ++G++ S
Sbjct: 17 LNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASKFRR 75
Query: 669 -----------WIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
I+ T+ EN+ G K+ R+ E LE LN ++
Sbjct: 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE-ALEKVGLNLKLK----- 129
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ I LSGG++QR+ LARA+ + + D+P ++D + ++ LL
Sbjct: 130 -------QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVLDLL 177
Query: 769 SQ-----KTVLYTTHQLEFLDAADLVL 790
+ KT++ TH E AD V+
Sbjct: 178 LELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-12
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 20/214 (9%)
Query: 1247 EKKI-GVVGRTGSGKSTLIQALFRVVEPSGG----RILIDGVDISMIGLQDLRSR----L 1297
E +I G+VG +G+GK+TL + + V+EP+ G R+ + VD++ G D R R +
Sbjct: 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAKRYI 367
Query: 1298 SIIPQDPMLFQGTVRTNLDPLEQHSDQEI---WEVINKCHLAEIVRQDQRLLDAPVAEDG 1354
I+ Q+ L+ RT LD L + E+ + ++V D+ + + +
Sbjct: 368 GILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP 425
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI---REETSRCTVITV 1411
+ S G+R V LA+VL+K+ RI++LDE T ++D T + +I REE + T I V
Sbjct: 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ-TFIIV 484
Query: 1412 AHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
+H + V+D D ++ +GK+++ P +++E+
Sbjct: 485 SHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 34/249 (13%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV----- 1270
+ +I++ENL + Y LK ++ P ++G +G GKST I+ L R+
Sbjct: 9 AQPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 1271 ---VEPSGGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQ 1324
+E G++ I+G DI + +LR + ++ Q P F ++ N+ + H
Sbjct: 67 NCRIE---GKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHG-- 121
Query: 1325 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN--------WSVGQRQLVCLARVLLKKKR 1376
NK L +V R A + ++ + S GQ+Q +C+AR L K +
Sbjct: 122 -----ANKKDLDGVVENALR--SAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK 174
Query: 1377 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435
I++ DE T+++D + I+ I T++ V H + +D G+++E+
Sbjct: 175 IILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234
Query: 1436 DSPRQLLED 1444
RQ+ +
Sbjct: 235 GQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I KG A+ G G GKS+LL + L G + + GK Y ++
Sbjct: 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDIYDLDVDVLEL 79
Query: 672 --------------TGTIRENILFG------KDMRQSFY--EEVLEGCALNQDIEMWADG 709
G+I +N+ +G K + EE L AL W +
Sbjct: 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL------WDE- 132
Query: 710 DLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
V +R + LSGGQ+QR+ LARA+ + +V + D+P SA+D + T ++ + L
Sbjct: 133 ----VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEELIAEL 187
Query: 768 LSQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGK 802
+ T++ TH ++ AD + +G++ + G
Sbjct: 188 KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 34/254 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I + N+ ++ L I+ + + ++G +G+GKSTL++ + + P GRI
Sbjct: 3 IRINNVKKRF-GAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1280 IDG---VDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTN---------LDPLEQHSDQEI 1326
++G D+S + ++D ++ + Q LF TV N P E +
Sbjct: 61 LNGRVLFDVSNLAVRD--RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E++ L + + L S GQRQ V LAR L + ++L+LDE +
Sbjct: 119 EELLRLVQLEGLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 1387 IDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443
+D +++ +R+ + T + V H ++ D V+VL++G++ + P ++ +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227
Query: 1444 DNSSSFSKLVAEFL 1457
+S F VA FL
Sbjct: 228 HPASRF---VARFL 238
|
Length = 345 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG----- 673
++ +G ++ + G G+GKS+LL + G P SG + V G+ + + + G
Sbjct: 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLG---LGGGFNPEL 99
Query: 674 TIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T RENI K++ + +E++E L I DL V S G
Sbjct: 100 TGRENIYLNGRLLGLSRKEIDE-KIDEIIEFSELGDFI------DLPVK-----TYSSGM 147
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-C---LMGLLSQ-KTVLYTTHQL 780
K R+ A A D+ + D+ + DA F++ C L LL Q KTV+ +H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGKTVILVSHDP 202
Query: 781 EFL-DAADLVLVMKDGKIEQSG 801
+ D LV++ GKI G
Sbjct: 203 SSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 47/258 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IELEN+ Y + L G++ + ++G +G GK+TL++ + P+ G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLEQHSDQEIWEVINKCHLAE 1337
+DG DI L + ++ + Q+ LF TV N+ L + K AE
Sbjct: 59 LDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLR----------LKKLPKAE 106
Query: 1338 IVRQDQRLLDAPVAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
I + LD E N S GQ+Q V +AR L+ + ++L+LDE A D
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG----ALD 162
Query: 1393 NVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVLDEGKVLEYDSPR 1439
+++ ++ E R T + V H D +D + V+++GK+ + +P
Sbjct: 163 LKLRKDMQLELKRLQKELGITFVFVTH------DQEEALTMSDRIAVMNKGKIQQIGTPE 216
Query: 1440 QLLEDNSSSFSKLVAEFL 1457
++ E+ ++ F VA+F+
Sbjct: 217 EIYEEPANRF---VADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 3e-12
Identities = 54/211 (25%), Positives = 105/211 (49%), Gaps = 21/211 (9%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSG- 1275
K++LE L V + +K ++ FP ++G +G GKST+++++ R+ + PS
Sbjct: 4 KVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1276 --GRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVI 1330
G+IL+D DI G+ +R R+ ++ Q P F ++ N+ + ++ +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI-----AGYKLNGRV 116
Query: 1331 NKCHLAEIVRQDQR---LLDA---PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
N+ EIV + L D + + S GQ+Q +C+AR + K ++++DE
Sbjct: 117 NRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176
Query: 1385 ASIDTATDNVIQQTIREETSRCTVITVAHRI 1415
+++D + I++ I E + T+I V H +
Sbjct: 177 SALDPISTLKIEELIEELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 28/238 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I +EN+ Y +VL ++ P ++G G+GKSTL+ + R+++ G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVRTNLD----PLEQ-HSDQEIWEVINKC 1333
IDG++++ ++L +LSI+ Q+ + + TVR + P Q +E +IN+
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119
Query: 1334 ----HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
HL ++ D R LD S GQRQ +A VL + ++LDE ++D
Sbjct: 120 IEYLHLEDL--SD-RYLD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 1390 ATDNVIQQTIR---EETSRCTVITVAHRIP-TVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
I + +R +E + T++ V H I +D ++ L GKV++ SP ++++
Sbjct: 169 KHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 1235 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
+ G++ T + + V G GSGK+TL++ L + P GR+L++G + R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR 73
Query: 1295 SRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1353
L + + +V NL HSD+++ E + + L D PVA+
Sbjct: 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-------FEDRPVAQ- 125
Query: 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
S GQ++ V LAR+LL + + +LDE T ++D A + + +R ++ +
Sbjct: 126 ---LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
Query: 1414 RIPTVIDNDLVLVLDEG 1430
+ LD G
Sbjct: 183 HQDLGLSEAGARELDLG 199
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 34/217 (15%)
Query: 1220 IELENL-----LVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1273
+E+E+L L Q VLK ++ T GE + + G +G+GKSTL+++L+ P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGEC-VALSGPSGAGKSTLLKSLYANYLP 60
Query: 1274 SGGRILI----DGVDISMIG---LQDLRSR--------LSIIPQDPMLFQGTVRTNLDPL 1318
GRIL+ VD++ + ++R + L +IP+ + +PL
Sbjct: 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPL 115
Query: 1319 -EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377
E+ +E + LA + +RL P A +S G++Q V +AR + I
Sbjct: 116 LERGVPREAARARARELLARL-NIPERLWHLPPA----TFSGGEQQRVNIARGFIADYPI 170
Query: 1378 LVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVAH 1413
L+LDE TAS+D A V+ + I E + +I + H
Sbjct: 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 29/187 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG---KKAYVPQSS----WIQ 671
G + V G G GK++LL+ I G +P I+ V G ++ V Q+ W
Sbjct: 27 GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWR- 85
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQ 730
+++N+ FG + + LE +M L +R I LSGGQ+QR+
Sbjct: 86 --NVQDNVAFGLQLAGVEKMQRLEIAH-----QMLKKVGLEGAEKRYIWQLSGGQRQRVG 138
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT---VLYTTHQLE---FLD 784
+ARA+ +N + + D+PF A+DA T + Q L+ L Q+T VL TH +E F+
Sbjct: 139 IARALAANPQLLLLDEPFGALDAFTREQM--QTLLLKLWQETGKQVLLITHDIEEAVFM- 195
Query: 785 AADLVLV 791
A +LVL+
Sbjct: 196 ATELVLL 202
|
Length = 255 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 28/213 (13%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS- 1274
GKI +++L + Y LK I + ++G +G GKST ++ L R+ + PS
Sbjct: 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1275 --GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWE 1328
G +L+DG DI S I + LR R+ ++ Q P F ++ N+ P
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP-------RTHG 112
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGEN--------WSVGQRQLVCLARVLLKKKRILVL 1380
+ +K L EIV ++ L A + ++ ++ S GQ+Q +C+AR L + +L++
Sbjct: 113 IKDKKKLDEIV--EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1381 DEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
DE T+++D + I++ I+E T++ V H
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
++ G+ T P G++G GSGKSTL++ L + P G + + GVD+ + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 1296 RLSIIPQD-----PMLFQGTVRTNLDP------LEQHSDQEIW-EVINKCHLAEIVRQDQ 1343
R++++ QD P+ + V P + D + + + L+ + +D
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-E 1402
L S G+RQ V +AR L ++ ++L+LDE T +D +RE
Sbjct: 136 STL-----------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 1403 TSRCTVITVAHRI---PTVIDNDLVLVLDEGKVLEYDSPRQLL 1442
+ TV+ H + + D+ V+VLD G+V+ PR++L
Sbjct: 185 ATGVTVVAALHDLNLAASYCDH--VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------YVP 665
I +G + + G GSGKS+L + G SG+ I + GK V
Sbjct: 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDGKPLAPKKRAKAFYRPVQMVF 88
Query: 666 QSS-------WIQTGTIRENILF-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
Q + E + G Q E+L+ L + D R
Sbjct: 89 QDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS---FLD--------R 137
Query: 718 GIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----- 771
+ LSGGQ+QRI +ARA+ + I D+P SA+D Q L LL K
Sbjct: 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQILNLLLELKKERGL 193
Query: 772 TVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808
T L+ +H L ++ D + VM +G+I + G E+L++
Sbjct: 194 TYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-PSGGR----ILIDGVDISMIGL 1290
VLK I FP + ++G +G GKSTL++AL R+ + SG R +L+D +I L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1291 Q--DLRSRLSIIPQDPMLFQGTVRTNL--DP--LEQHSDQEIWEVINKCHLAEIVRQDQR 1344
+LR R+ ++ Q P F ++ N+ P L + + EV+ K L + D+
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKS-LRQAALWDE- 136
Query: 1345 LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS 1404
+ + + G S GQ+Q +C+ARVL + ++++DE +++D + I++ ++E
Sbjct: 137 -VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195
Query: 1405 RCTVITVAHRIPTVI-DNDLVLVLDEGKVLEY 1435
T+ V H + +D L G ++EY
Sbjct: 196 NYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227
|
Length = 251 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 32/214 (14%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------AYVPQSS---W 669
GS A+ G GSGKS+L +++G + R++ I + G+ AYVPQS W
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVPQSEEVDW 91
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI--EMWADGDLSVVGERGI-NLSGGQK 726
+ + ++ G+ + ++ I A D+ R I LSGGQK
Sbjct: 92 SFPVLVEDVVMMGRYGHMGWLRR---AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK 148
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL---- 780
+R+ LARA+ V + D+PF+ VD T + L+ L KT+L +TH L
Sbjct: 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELRDEGKTMLVSTHNLGSVT 206
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
EF D VM G + SG E +N EL
Sbjct: 207 EFCDYT----VMVKGTVLASGPTETTFTAENLEL 236
|
Length = 272 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 33/246 (13%)
Query: 1220 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I + + +Y P L + + P + ++G TGSGKSTL+Q L +++P+ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1277 RILIDGVDISM----IGLQDLRSRLSIIPQDP--MLFQGTVR-------TNLDPLEQHSD 1323
+ I I+ L+ LR ++ I+ Q P LF+ TV N E+ +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382
Q+ E+I E+V + LL +P G GQ + V +A VL + +LVLDE
Sbjct: 123 QKAREMI------ELVGLPEELLARSPFELSG-----GQMRRVAIAGVLAMEPEVLVLDE 171
Query: 1383 ATASIDTATDNVIQQ---TIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438
TA +D + + + +E T + V H + D ++V+ +G V +P
Sbjct: 172 PTAGLDPKGRKEMMEMFYKLHKEKG-LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230
Query: 1439 RQLLED 1444
R++ D
Sbjct: 231 REIFAD 236
|
Length = 290 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 30/205 (14%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF 681
KG + + G G+GK++LL +ILG IP G +KV G P W G + + F
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGAS---PGKGWRHIGYVPQRHEF 60
Query: 682 GKDMRQSFYEEVLEGCA---------LNQDIEMWADG----DLSVVGERGI-NLSGGQKQ 727
D S V+ G D D L+ + +R + LSGGQ+Q
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQ 120
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQL-E 781
R+ +ARA+ + V + D+PF+ +D T ++ L L + +L TTH L +
Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPT-----QELLTELFIELAGAGTAILMTTHDLAQ 175
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
+ D V+++ +G++ G + L
Sbjct: 176 AMATCDRVVLL-NGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-12
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 23/225 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1277
+E+ + ++ + ++ + GE I ++G G+GKSTL++ LF + +P G
Sbjct: 5 LEMRGITKRFPGVV--ANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1278 ILIDGVDISMIGLQD-LRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHL 1335
I +DG ++ + +D +R + ++ Q ML TV N+ L + +
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-ILGLEPSKGGLIDRRQAR- 118
Query: 1336 AEIVRQDQRL-----LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI-DT 1389
A I +R DA VA+ SVG++Q V + + L + R+L+LDE TA +
Sbjct: 119 ARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1390 ATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKV 1432
D + + +R + T+I + H++ V+ D V VL GKV
Sbjct: 175 EADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+EN+ ++ L I+ + + G++G G+GK+T I+ + ++ P G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQ-----HSD--QEIWEVIN 1331
DG + + R+R+ +P++ L+ V L L Q + + I E +
Sbjct: 59 FDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
+ L+E ++R+ E S G +Q V ++ +L+LDE + +D
Sbjct: 115 RLELSE--YANKRV---------EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 1392 DNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435
+++ IRE TVI H++ V + D VL+L++G+ + Y
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIK----VHGKKAYVPQSSWIQTGT 674
+G A+ G GSGKS+LL+ I G E P+ I A P S Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ--- 77
Query: 675 IRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSGGQKQ 727
EN LF + Q+ + G L + + L+ VG G+ LSGG++Q
Sbjct: 78 --ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ 135
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDA 785
R+ LAR + + V + D+PF+A+D ++ L ++ TVL THQ E DA
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPAL-RAEMLDLVLDLHAETKMTVLMVTHQPE--DA 192
Query: 786 ---ADLVLVMKDGKIEQSG 801
A V+ + +G+I G
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------AYVPQSSWI 670
+ KG + G G+GK++ + ILG I SG + GK Y+P+ +
Sbjct: 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEERGL 81
Query: 671 -QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVGERGIN-LSGGQKQ 727
+ + +++ ++ EE I+ W + +LS + + LS G +Q
Sbjct: 82 YPKMKVIDQLVYLAQLKGLKKEEARR------RIDEWLERLELSEYANKRVEELSKGNQQ 135
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA- 785
++Q AV + ++ I D+PFS +D L K + L KTV+ +THQ+E ++
Sbjct: 136 KVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQMELVEEL 194
Query: 786 ADLVLVMKDGKI 797
D VL++ G+
Sbjct: 195 CDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 1235 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-L 1293
+ ++ + +G++G G+GK+TL + +PS G ++ G DI+ GL
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHR 75
Query: 1294 RSRLSIIP--QDPMLFQG-TVRTNL---------------DPLEQHSDQEIWEVINKCHL 1335
+RL I Q LF G TV N+ P + ++E E L
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--EL 133
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI-DTATDNV 1394
E V L N S GQ++ + +AR L + ++L+LDE A + T+ +
Sbjct: 134 LEFVG-----LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1395 IQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
+ IRE + T++ + H + V+ D ++VL+ G+V+ +P ++ +
Sbjct: 189 A-ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-12
Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 16/221 (7%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG----LQD 1292
+ + F K +VG+TGSGKSTLIQ + +++P+ G + +D + I+ ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1293 LRSRLSIIPQDP--MLFQGTVRTNLDPLEQHSDQEIWEVINKCH--LAEIVRQDQRLLDA 1348
+R R+ ++ Q P LF+ TV + ++ + EV N H L ++ + +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRC 1406
P G GQ + + + +L I+VLDE TA +D + + + ++
Sbjct: 143 PFQMSG-----GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197
Query: 1407 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446
T+I V+H + V D V+V+ EG ++ SP++L +D
Sbjct: 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 28/214 (13%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQD 1292
+L ++ + + ++G +GSGK+TL+ A+ VE G G+IL +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78
Query: 1293 LRSRLSIIPQDPMLFQG-TVR-----TNLDPLEQHSD----QEIWEVINKCHLAEIVRQD 1342
+ ++ + QD +L G TVR T + L + S ++ E + LA
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----L 133
Query: 1343 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE 1402
R+ V + S G+R+ V +A LL ++L+LDE T+ +D+ T + T+ +
Sbjct: 134 TRIGGNLV----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189
Query: 1403 TSR-CTVITVAHRIPTVIDN--DLVLVLDEGKVL 1433
R VI H+ + + D +L+L G+++
Sbjct: 190 ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 9e-12
Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 38/226 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK---------------- 661
+I KG + G G+GKS+LL I E P + ++ V G+
Sbjct: 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKI 85
Query: 662 AYVPQS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ Q + + + T+ EN+ F + + V E L + AD +
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL-VGLSDKADRYPA---- 140
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TV 773
LSGGQKQR+ +ARA+ +N + + D+ SA+D T + + L+ ++++ T+
Sbjct: 141 ---QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLKDINRELGLTI 195
Query: 774 LYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ TH++E + D V V+ G++ + G ++ A+ + ++
Sbjct: 196 VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEF 241
|
Length = 339 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 42/203 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI-- 675
+ + KG G G+GK++ + ILG I + I GK + + G +
Sbjct: 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIE 79
Query: 676 ----------RENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-- 720
REN+ +R+ +EVL+ VVG +
Sbjct: 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLD-----------------VVGLKDSAKK 122
Query: 721 ----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLY 775
S G KQR+ +A A+ N D+ I D+P + +D G ++ ++ L Q TVL
Sbjct: 123 KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILSLRDQGITVLI 181
Query: 776 TTHQLEFLD-AADLVLVMKDGKI 797
++H L + AD + ++ GK+
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281
L N + N TLP GIT F G +GSGK++LI + + P GRI ++
Sbjct: 10 LGNFALDANFTLPAR--GITALF---------GPSGSGKTSLINMIAGLTRPDEGRIELN 58
Query: 1282 G---VDISM-IGLQDLRSRLSIIPQDPMLFQG-TVRTNL----DPLEQHSDQEIWEVINK 1332
G VD I L + R+ + QD LF TVR NL + ++ ++
Sbjct: 59 GRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGI 118
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT- 1391
HL + R L S G++Q V + R LL +L++DE AS+D
Sbjct: 119 EHL--LDRYPGTL------------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 1392 DNVIQ--QTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436
++ + +R+E ++ V+H + V+ D V+VL+ GKV
Sbjct: 165 REILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS--- 1274
+ +NL + Y L IT + P + ++G +G GKSTL++ R+ + P
Sbjct: 7 LSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 1275 GGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1332
G IL +G +I G LR ++ ++ Q P F ++ N+ I NK
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENV-----AYGPRIHGEKNK 119
Query: 1333 CHLAEIVRQD-----------QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381
L IV + RL D+ ++ G GQ+Q +C+AR L ++++D
Sbjct: 120 KTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG-----GQQQRLCIARTLAVNPEVILMD 174
Query: 1382 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440
E +++D I+ I + TVI V H + +D + GK++E+D Q
Sbjct: 175 EPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234
Query: 1441 LLED 1444
+ E+
Sbjct: 235 IFEN 238
|
Length = 253 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 24/224 (10%)
Query: 607 FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH----GKK 661
+ + D + +G + G G+GK++LL I + SG
Sbjct: 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP 70
Query: 662 AYVPQSSWIQTG--------TIRENIL-FGK--DMRQSFYEEVLEGCALNQDIEMWADGD 710
++V + + G T REN+ F + + + + + L++ +++
Sbjct: 71 SFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA--ELSKRLQL----- 123
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
L + R S G KQ++ +ARA+ + + + D+P S +D T
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSE 813
+ V++++H ++ ++A D V+V+ G++ G E L A
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLR 227
|
Length = 245 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 71/280 (25%), Positives = 113/280 (40%), Gaps = 63/280 (22%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I LENL + Y +L+ ++ T ++IG+VGR G+GKSTL++ L +EP G +
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVI--------- 1330
R+ + Q+P +T LD + + E+ E++
Sbjct: 62 RPKG-----------LRVGYLSQEP--PLDPEKTVLDYVIE-GFGELRELLAELEEAYAL 107
Query: 1331 ---NKCHLAEIVRQDQRLLDAPVAE------------DGENWSV-----GQRQLVCLARV 1370
L + LD E E+ V G R+ V LAR
Sbjct: 108 LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARA 167
Query: 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE- 1429
LL++ +L+LDE T +D + ++ ++ TVI V+H D LD
Sbjct: 168 LLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH------DRYF---LDNV 216
Query: 1430 -GKVLEYDSPRQLLED---NSSSFSKLVAEFLRRTSKSNR 1465
+LE D R L N SS+ + AE LR+ + +
Sbjct: 217 ATHILELD--RGKLTPYKGNYSSYLEQKAERLRQEAAAYE 254
|
Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAIKVHGKK-----------AYVP 665
++I G +A+ G G GK++LL +I G + I + + A +
Sbjct: 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85
Query: 666 QS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
Q+ + + +N+ FG ++ ++ E A +++ GD + LSGG
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA--DALKLVGLGDAA--AHLPAQLSGG 141
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTH-QLE 781
+QRI +ARA+ DV + D+P SA+DA+ ++ ++ L L + T+L TH Q +
Sbjct: 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
L AD +MKDG++ G+ + L
Sbjct: 202 ALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1292
VL ++ + + +G++GR+G GKSTL + L + +P+ G + G D+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1293 LRSRLSIIPQD-PMLF--QGTVRTNL-DPLEQHSDQEIWEVINKC-HLAEIVRQDQRLLD 1347
R + ++ QD P + TVR + +PL + + E + L ++V D
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 1348 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-- 1405
+ S GQ Q + +AR L K +++VLDEA +++D VI + +R+
Sbjct: 146 KLPRQ----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 1406 --CTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434
IT H + V V V+D+G+++E
Sbjct: 202 TAYLFIT--HDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 24/245 (9%)
Query: 1217 SGKIELENLLVQYNPTLPMVLKGI---TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1273
S I L+N+ Y P K + + TF K V+G TGSGKST+IQ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1274 SGGRILIDGVDI-----SMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQ 1324
G+ ++ I + ++ LR + ++ Q P LFQ T+ ++ P+ ++
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1325 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
+ E K + E+++ Q L + V S GQ++ V LA ++ LVLDE T
Sbjct: 124 Q--EAYKK--VPELLKLVQ-LPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 1385 ASIDTATD----NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1439
+D + N+ ++ +E R +I V H + V+ D V+V+ EGKV+ SP
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKR--IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
Query: 1440 QLLED 1444
++ +
Sbjct: 237 EIFSN 241
|
Length = 289 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG---GRILIDGVDISMIGLQ 1291
LKGI+ + + +G +G GKST ++ R+ + P+ G I IDG +I G+Q
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1292 --DLRSRLSIIPQDPMLFQGTV--------RTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1341
+LR + ++ Q P F ++ R N Q + E + L + V+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
+L ++ A G GQ+Q +C+AR + +L++DE +++D + +++ I E
Sbjct: 139 --KLKESAFALSG-----GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1402 ETSRCTVITVAHRI---PTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
T++ V H + V D + G+++EYD +++ +
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTKKIFTN 235
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
I +G + + G G GKS+L ILG SG I GK +
Sbjct: 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGK----------------DIT 78
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
K+ R+ E+LE L ++ LSGGQ+QRI +ARA+ N
Sbjct: 79 KLSKEERRERVLELLEKVGLPEEFLYRYP----------HELSGGQRQRIGIARALALNP 128
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQLE-FLDAADLVLVMKDG 795
+ + D+P SA+D + L+ L ++ T L+ +H L +D + VM G
Sbjct: 129 KLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLG 186
Query: 796 KIEQSGKYEDLIAD 809
KI + G E++ ++
Sbjct: 187 KIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 65/260 (25%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 1212 PEWPSSGKIELE--NLLVQYNPTLP---MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQA 1266
P S I L NL ++ + L I+ TF K ++G +GSGKSTL+
Sbjct: 12 VPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTH 71
Query: 1267 LFRVVEPSGGRILIDGVDIS----------------MIGLQDLRSRLSIIPQDP--MLFQ 1308
+++ G I + + I + ++LR R+S++ Q P LF+
Sbjct: 72 FNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK 131
Query: 1309 GTVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366
T+ ++ P+ + + + K +L ++ D L +P G GQ++ V
Sbjct: 132 DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG-----GQKRRVA 186
Query: 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLV 1424
+A +L + IL+ DE TA +D ++ + Q I + + + TV + H + V++ D V
Sbjct: 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV 246
Query: 1425 LVLDEGKVLEYDSPRQLLED 1444
+V+D+GK+L+ +P ++ D
Sbjct: 247 IVMDKGKILKTGTPYEIFTD 266
|
Length = 320 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-11
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
+L+ ++ + P K V+G TGSGKSTL+Q+L E S GR+ + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355
++ +PQ + TVR N+ ++ + + + L + Q L+ + E G
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT-DNVIQQTIREETSRCTVITVAHR 1414
N S GQ+ V LAR + + + +LD+ +++D + V+++ + T + H+
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841
Query: 1415 IPTVIDNDLVLVLDEGKV 1432
+ V D V+ L +G+V
Sbjct: 842 VHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-11
Identities = 81/361 (22%), Positives = 163/361 (45%), Gaps = 45/361 (12%)
Query: 490 SLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS-ALATFRILQEPIYN 548
+L+ + I F+ + T +++ T G +L+ A+ LQ + +
Sbjct: 1107 TLRWFQMRIDIIFVFFFIAVTFIAIGTNQD-----GEGEVGIILTLAMNILSTLQWAVNS 1161
Query: 549 LPELISMIAQTKVSLYRIQEFI---KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR-E 604
++ ++ S+ R+ +FI +E+ + ++ + I+ + W + +
Sbjct: 1162 SIDVDGLMR----SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQ 1217
Query: 605 ENFKKPTIKLTD---------KMKIMKGSKVAVCGSVGSGKSSLLSSIL------GEIP- 648
+ + T K T+ + G +V + G GSGKS+LLS++L GEI
Sbjct: 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQI 1277
Query: 649 -RISGAAIKVHG-KKAY--VPQSSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALN 700
+S ++ + +KA+ +PQ +I +GT R+N+ D + + +E V E L
Sbjct: 1278 DGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLK 1333
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
IE + D V+ + G LS G KQ + LAR++ S + + + D+P + +D T +
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQII 1392
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
++ L S TV+ + H++E L LV++ ++Q + L+ + + L +Q +
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMS 1450
Query: 821 H 821
Sbjct: 1451 A 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 27/250 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ N+ ++ + L ++ P + + ++G +GSGK+TL++ + + P G IL
Sbjct: 3 IEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHLAE 1337
G D + + +Q+ + + Q LF+ TV N+ L + E + AE
Sbjct: 61 FGGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRV---KPRSERPPE---AE 112
Query: 1338 IVRQDQRLLDAPVAEDG------ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
I + LL V D S GQRQ V LAR L + ++L+LDE ++D
Sbjct: 113 IRAKVHELLKL-VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 1392 DNVIQQTIRE---ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447
+++ +R E TV V H ++ D V+V+++G++ + +P ++ + +S
Sbjct: 172 RKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 1448 SFSKLVAEFL 1457
F V FL
Sbjct: 231 PF---VYSFL 237
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KVHGKKAYV----- 664
I KG + + G GSGKS+L + G + G + K+ G + V
Sbjct: 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ 84
Query: 665 -PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ER 717
P++ ++ T+ E++ FG + C +I D L+ +G
Sbjct: 85 NPETQFVGR-TVEEDLAFGPE----------NLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
LSGGQ Q + LA + + IFD+ S +D +G + ++ KT++Y T
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYIT 193
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN-----------SELVRQMKAH 821
H LE L AD ++VM GKI G+ E++++D + EL +K H
Sbjct: 194 HNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENLKMH 248
|
Length = 274 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKVHGKK----------AYVPQ 666
K G A+ G G+GKS+LL+++ G +SG + ++G+ YVPQ
Sbjct: 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSFRKIIGYVPQ 89
Query: 667 -SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T T+RE ++F +R LSGG+
Sbjct: 90 DDILHPTLTVRETLMFAAKLRG---------------------------------LSGGE 116
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQL--EF 782
++R+ +A + SN + D+P S +D+ + + L L +T++ + HQ E
Sbjct: 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQPSSEI 175
Query: 783 LDAADLVLVMKDGKI 797
+ D +L++ G++
Sbjct: 176 FELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+++ KG V G G GK++LL +++G +P SG +I++ G+ AY
Sbjct: 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAY 79
Query: 664 VPQSSWI-QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL-----SVVGER 717
VPQ I T+ EN+L G ++ + E++ +L ++G R
Sbjct: 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPD--------EIY---ELFPVLKEMLGRR 128
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV------DAHTGTHLFKQCLMGLLSQK 771
G +LSGGQ+Q++ +ARA+ + + + D+P + D + + L ++
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG-------RVIRRLRAEG 181
Query: 772 --TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
+L L+F + AD VM+ G++ SG ++L D+ +
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDKVRRYL 228
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 37/201 (18%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKK----------AYVPQSS-WIQTG 673
A+ GS GSGK++LL +I G + + I +G+ AYV Q +
Sbjct: 37 AILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96
Query: 674 TIRENILF------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
T+RE + + + + ++ +E L + G +SGG+++
Sbjct: 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL------ALTRIGGNLVKGISGGERR 150
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQ--L 780
R+ +A + + V I D+P S +D+ T +L LSQ + V+ T HQ
Sbjct: 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-----TLSQLARRNRIVILTIHQPRS 205
Query: 781 EFLDAADLVLVMKDGKIEQSG 801
+ D +L++ G+I SG
Sbjct: 206 DLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 29/240 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
+E +L Y P LKGI F EK + ++G G+GKSTL +++P+ G
Sbjct: 2 LETRDLKYSY-PDGTEALKGIN--FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE 58
Query: 1278 ILIDG--VDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWEVIN 1331
+LI G + L ++R + I+ Q+P LF TV ++ PL +E
Sbjct: 59 VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE------ 112
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E+ ++ + L A E EN S GQ++ V +A +L K I+VLDE T+
Sbjct: 113 -----EVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 1387 IDTATDNVIQQTIREETSR-CTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLED 1444
+D + I + + + T+I H + V + D V V+ +GK+++ +P+++ D
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
|
Length = 275 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 30/202 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I KG VA+ GS GSGKS+LL +LG + + + +G+ S+ + +R
Sbjct: 26 LSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPTSGEVLFNGQSLSKLSSN--ERAKLR- 81
Query: 678 NILFGKDMRQSFYEEVLEGCALN-------------QDIEMWADGDLSVVG-ERGIN--- 720
N G F+ + + AL ++ + A L VG E IN
Sbjct: 82 NKKLG--FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKT-VLY 775
LSGG++QR+ +ARA+ + + + D+P +D + +F LM L+ T L
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF--DLMLELNRELNTSFLV 197
Query: 776 TTHQLEFLDAADLVLVMKDGKI 797
TH LE D VL MKDG++
Sbjct: 198 VTHDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 29/208 (13%)
Query: 609 KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667
KP L D + I G V V G G GK++LL+ I G + G+ I+++G++ P +
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGPGA 74
Query: 668 S------------WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
W+ + +N+ FG +R + E +M A L
Sbjct: 75 ERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAH-----QMLALVGLEGAE 126
Query: 716 ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT 772
+ I LSGG +QR+ +ARA+ + + D+PF A+DA T + ++ L+ L + K
Sbjct: 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETGKQ 185
Query: 773 VLYTTHQLE---FLDAADLVLVMKDGKI 797
VL TH +E FL +VL G++
Sbjct: 186 VLLITHDIEEALFLATRLVVLSPGPGRV 213
|
Length = 259 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 65/262 (24%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-----PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
++L ++ Y+ LPM F GE+ + ++G +G+GKSTL+ + + P+
Sbjct: 2 LKLTDITWLYH-HLPM-------RFDLTVERGER-VAILGPSGAGKSTLLNLIAGFLTPA 52
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQG-------TVRTN----LDP-LEQ 1320
G + ++G D + + P MLFQ TV N L+P L+
Sbjct: 53 SGSLTLNGQD----------HTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL 102
Query: 1321 HSDQEIWEVINKCHLAEIVRQD--QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
++ Q + L I RQ + LL + S GQRQ V LAR L++++ IL
Sbjct: 103 NAAQ-------REKLHAIARQMGIEDLLARLPGQ----LSGGQRQRVALARCLVREQPIL 151
Query: 1379 VLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAH------RIPTVIDNDLVLVLDEG 1430
+LDE +++D A + + + + + T++ V+H RI LV+ +G
Sbjct: 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP-----RSLVVADG 206
Query: 1431 KVLEYDSPRQLLEDNSSSFSKL 1452
++ +D P L +S S L
Sbjct: 207 RIA-WDGPTDELLSGKASASAL 227
|
Length = 232 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 30/246 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--------V 1271
IE +L V Y L ++ P + ++G +G GKST ++ + R+ V
Sbjct: 40 IEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV 97
Query: 1272 EPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN------LDPLEQHSD 1323
E G + G ++ + + LR R+ ++ Q P F ++ N + + D
Sbjct: 98 E---GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+ + E + + L + V+ DQ LD G + S GQ+Q +C+AR + ++++DE
Sbjct: 155 ERVEESLRRAALWDEVK-DQ--LD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207
Query: 1384 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTV--IDNDLVLVLDEGKVLEYDSPRQL 1441
+++D + I+ I E TV+ V H + I + + L G+++E+D ++
Sbjct: 208 ASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267
Query: 1442 LEDNSS 1447
E+ S
Sbjct: 268 FENPES 273
|
Length = 285 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 28/232 (12%)
Query: 1237 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSG---GRILI 1280
+K IT TF G K + + G G+GKSTL++ L V P G G I+
Sbjct: 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIF 66
Query: 1281 DGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNL---DPLEQHSDQEIWEVINKCHL 1335
+G ++ ++D R+ ++II Q+ L + +V N+ + + + + +
Sbjct: 67 EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ- 125
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
+++ Q + LD A N +GQ+QLV +A+ L K+ R+L+LDE TAS+ + V+
Sbjct: 126 -KLLAQLK--LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182
Query: 1396 QQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445
IR+ + I ++H++ V +D + V+ +G+ + + ED+
Sbjct: 183 LDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234
|
Length = 506 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 30/223 (13%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS- 1295
+K ++ T + + ++G GSGKSTL + L ++EP+ G +LID + G RS
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-GDYSYRSQ 87
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN-----KCHLAEIVRQD---QRLLD 1347
R+ +I QDP T+L+P Q I ++++ L R+ + L
Sbjct: 88 RIRMIFQDP-------STSLNP-----RQRISQILDFPLRLNTDLEPEQREKQIIETLRQ 135
Query: 1348 APVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE- 1401
+ D ++ + GQ+Q + LAR L+ + ++++ DEA AS+D + + + + E
Sbjct: 136 VGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
Query: 1402 -ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
E + I V + + +D VLV+ +G+V+E S +L
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 41/221 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTG----- 673
I +G+ V + G G GK+++L + G E P + I + G+ V S IQ
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGED--VTHRS-IQQRDICMV 83
Query: 674 ----------TIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGI 719
++ EN+ +G M EE V E L DL+ +R +
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV---------DLAGFEDRYV 134
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLY 775
+ +SGGQ+QR+ LARA+ V +FD+P S +DA+ + ++ + L Q+ T LY
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IRELQQQFNITSLY 192
Query: 776 TTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
TH Q E +D V+VM GKI Q G ++L S +
Sbjct: 193 VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233
|
Length = 351 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
VLK I + + + G TGSGK++L+ + +EPS G+I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355
R+S Q + GT++ N+ + + V+ C L E + + + + E G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158
Query: 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1414
S GQR + LAR + K + +LD +D T+ + + + + + T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1415 IPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1456
+ + D +L+L EG Y + + L+ FS + +
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFSSKLMGY 259
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 44/233 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ELEN+ ++ L + + + ++G +G GK+T ++ + + EP+ GRI
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQH--SDQEI 1326
I G D++ + P+D M+FQ TV N+ L+ EI
Sbjct: 59 IGGRDVTDLP-----------PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E + + +AE+++ + LLD + S GQRQ V L R ++++ ++ ++DE ++
Sbjct: 108 DERVRE--VAELLQIEH-LLDRKPKQ----LSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
Query: 1387 IDTATDNVIQQTIREETSR------CTVITVAH-RIPTVIDNDLVLVLDEGKV 1432
+D ++ +R E R T I V H ++ + D + V+++G++
Sbjct: 161 LDAK----LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVP-----------QS 667
A+ G GSGK++L+ I G R I ++G K ++P ++
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 668 SWIQTGTIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
++R N+ +G R+ +E V IE+ G L +G LS
Sbjct: 85 RLFPHLSVRGNLRYGMKRARPSERRISFERV---------IELLGIGHL--LGRLPGRLS 133
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT---VLYTT 777
GG+KQR+ + RA+ S+ + + D+P +A+D + L L L + +LY +
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKYEILPYLERLHAEFGIPILYVS 189
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
H L E L AD V+V++DG++ +G ++ A +
Sbjct: 190 HSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 52/194 (26%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDI--SMIG 1289
L GI+ F ++ ++G +G GKST ++ L R+ + G I +G +I S +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLD--------PLEQHSDQEIWEVINKCHLAEIVRQ 1341
L +LR + ++ Q P F +V N+ ++ DQ + E + + A I ++
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ---AAIWKE 136
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
+ LD + + +S GQ+Q +C+AR L + ++++LDE T+++D + + I++T+ E
Sbjct: 137 TKDNLD----RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 1402 ETSRCTVITVAHRI 1415
+ T I V H +
Sbjct: 193 LKHQYTFIMVTHNL 206
|
Length = 251 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 1236 VLKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
+ G++ GE + + G GSGK+TL++ + ++ P+ G I +DG DI D+
Sbjct: 17 LFSGLSFTLAAGEALV-LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---DDPDVA 72
Query: 1295 SRLSII-PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE- 1352
+ ++ M TV NL E W +I + + AP+A
Sbjct: 73 EACHYLGHRNAMKPALTVAENL---------EFWAAFLGGEELDIAAALEAVGLAPLAHL 123
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1412
S GQ++ V LAR+L+ + I +LDE TA++D A + + IR ++ ++ A
Sbjct: 124 PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
Query: 1413 HRIPTVIDN 1421
IP +
Sbjct: 184 THIPLGLPG 192
|
Length = 207 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 51/165 (30%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1311
+ G +G+GKS+L +AL + GRI + L +PQ P L GT+
Sbjct: 32 ITGPSGTGKSSLFRALAGLWPWGSGRIGMPE-----------GEDLLFLPQRPYLPLGTL 80
Query: 1312 RTNLDPLEQHSDQEI--WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369
R +Q I W D L S G++Q + AR
Sbjct: 81 R----------EQLIYPW--------------DDVL------------SGGEQQRLAFAR 104
Query: 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1414
+LL K + + LDEAT+++D +++ + Q ++E TVI+V HR
Sbjct: 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------------KKAY 663
I G VA+ G G+GKS+LL I + S +I + G +
Sbjct: 25 INPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------E 716
+ Q + I+ T+ EN+L G+ + + +L G +D E A L VG +
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLL-GRFSEEDKER-ALSALERVGLADKAYQ 141
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------Q 770
R LSGGQ+QR+ +ARA+ D+ + D+P +++D T +M L
Sbjct: 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ-----VMDYLKRINKEDG 196
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKI 797
TV+ HQ++ AD ++ +K G+I
Sbjct: 197 ITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 48/201 (23%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1309
+G+VG +G GKSTL + + + EP+ G IL +G DI
Sbjct: 42 LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI------------------------ 77
Query: 1310 TVRTNLDPLEQHSDQEIWEVINKCHLAE--IVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367
++ + + E++ K L E + R L S GQRQ + +
Sbjct: 78 -----TKLSKEERRERVLELLEKVGLPEEFLYRYPHEL------------SGGQRQRIGI 120
Query: 1368 ARVLLKKKRILVLDEATASIDTAT-DNVIQ--QTIREETSRCTVITVAHRIPTVID-NDL 1423
AR L +++V DE +++D + ++ + ++EE T + ++H + V +D
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG-LTYLFISHDLSVVRYISDR 179
Query: 1424 VLVLDEGKVLEYDSPRQLLED 1444
+ V+ GK++E ++ +
Sbjct: 180 IAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 54/217 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV--------PQSSW 669
+I KG +V + G G+GKS+LL I G SG +KV GK A + P+
Sbjct: 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPE--- 103
Query: 670 IQTGTIRENILF--------GKDMRQSFYEEVLE----GCALNQDIEMWADGDLSVVGER 717
TG RENI K++ +E++E G ++Q ++
Sbjct: 104 -LTG--RENIYLRGLILGLTRKEI-DEKVDEIIEFAELGDFIDQPVK------------- 146
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGL----LSQKT 772
S G R+ + A + D+ + D+ + DA F++ CL L KT
Sbjct: 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKT 199
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
++ +H L + D + ++ G+I G E++I
Sbjct: 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 45/248 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPS--- 1274
+++ +L V YN L ++ F + ++G +GSGKSTL++++ R+ + P
Sbjct: 6 LQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 1275 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN---------------LDP 1317
G I+ +G +I DLR + ++ Q P F ++ N LD
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE 123
Query: 1318 LEQHSDQ--EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
+ S + IW+ + RL D+ + G GQ+Q VC+ARVL
Sbjct: 124 AVEKSLKGASIWDEVK-----------DRLHDSALGLSG-----GQQQRVCIARVLATSP 167
Query: 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI--PTVIDNDLVLVLDEGKVL 1433
+I++LDE T+++D + I++T+ T++ V + + I + LD G ++
Sbjct: 168 KIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD-GDLI 226
Query: 1434 EYDSPRQL 1441
EY+ +Q+
Sbjct: 227 EYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP---------QSS 668
+ I +G +++ G G GKS+LL+ I G + + + + + GK+ P S
Sbjct: 6 LTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 669 WIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ T+RENI D+ +S ++E + I + G +R LSG
Sbjct: 65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVE-----EHIALV--GLTEAADKRPGQLSG 117
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL- 780
G KQR+ +ARA+ V + D+PF A+DA T +L ++ LM + + TVL TH +
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE-LMQIWEEHRVTVLMVTHDVD 176
Query: 781 EFLDAADLVLVMKDGKIEQSGK 802
E L +D V+++ +G G+
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 33/219 (15%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL- 1293
V+K I+ T PGE +G+VG +GSGKST AL R++ S G I DG + + + L
Sbjct: 301 VVKNISFTLRPGET-LGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1294 --RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI--VRQDQRLLDA- 1348
R R+ ++ QDP ++L+P + + +I E + H + +++Q+++
Sbjct: 359 PVRHRIQVVFQDP-------NSSLNP--RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 1349 -PVAEDGEN-------WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400
V D E +S GQRQ + +AR L+ K +++LDE T+S+D I ++
Sbjct: 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
Query: 1401 --EETSRCTVITVAHRIPTVIDNDL---VLVLDEGKVLE 1434
++ + + ++H + V L V+VL +G+V+E
Sbjct: 470 SLQQKHQLAYLFISHDLHVV--RALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 45/256 (17%)
Query: 1208 SRPSPEWPSSGK--------IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGS 1258
P P+ P IEL+N+ V+ N +L ++ PGE +VG G+
Sbjct: 12 ELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKK--ILGDLSWQVNPGEHWA-IVGPNGA 68
Query: 1259 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSIIPQDPMLFQGTVRTNLDP 1317
GK+TL+ L PS G + + G +LR R+ ++ L + R
Sbjct: 69 GKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETV 125
Query: 1318 LE--------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
+ + E L E++ + L D P S G+++
Sbjct: 126 RDVVLSGFFASIGIYQEDLTAEDLAAAQ--WLLELL-GAKHLADRPFGS----LSQGEQR 178
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC---TVITVAHR---IPT 1417
V +AR L+K +L+LDE +D + + E + ++ V H IP
Sbjct: 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238
Query: 1418 VIDNDLVLVLDEGKVL 1433
+ L+L EG+V+
Sbjct: 239 CFTH--RLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296
+ G+ + G +G G+GK+T I+ L ++ P+ G + G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67
Query: 1297 LSIIPQDPMLFQG-TVRTNLDPL-------EQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1348
+ I+PQ + + T R NL+ + + +++ E++ L E+ R +
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE---LFELGEAADRPV-- 122
Query: 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CT 1407
+S G R+ + +A L+ + +L LDE T +D T I IR T
Sbjct: 123 ------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1408 VITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
++ H + D + ++D G+++ +P +L
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-11
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 14/219 (6%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
VLK I+ + + V G TGSGKS+L+ + +EPS G+I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355
R+S PQ + GT++ N+ + + VI C L E + + E G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD-NVIQQTIREETSRCTVITVAHR 1414
S GQR + LAR + K + +LD +D T+ + + + + S T I V +
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK 607
Query: 1415 IPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
+ + D +L+L EG Y + +L S L+
Sbjct: 608 LEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 46/222 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I K A+ G G GKS+LL S+ L RI G + G+ Y + ++
Sbjct: 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVVEL 80
Query: 672 ---TG-----------TIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
G +I +NI +G K EE L+ AL W +
Sbjct: 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL------WDE- 133
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ +
Sbjct: 134 ----VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIEELIQ 188
Query: 766 GLLSQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDL 806
L + T++ TH ++ +D DG++ + G E +
Sbjct: 189 ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 6e-11
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 43/232 (18%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDI--SMIG 1289
LKGI F + ++G +G GKST ++ L R+ + P G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
+ LR ++ ++ Q P F ++ N VI LA + +D+ +LD
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYEN--------------VIYGLRLAGV--KDKAVLDEA 124
Query: 1350 VA-----------------EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
V E + S GQ+Q VC+ARVL K +++LDE T+++D +
Sbjct: 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184
Query: 1393 NVIQQTIREETSRCTVITVAHRI--PTVIDNDLVLVLDEGKVLEYDSPRQLL 1442
I+ + E + T+I V H + + I + L G ++E+ +Q+
Sbjct: 185 TQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFL-TGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 1235 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
+ I+ T P G++G G+GKSTL++ + ++ P+ G I+ DG + +DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLH 70
Query: 1295 SRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1351
S+I P+ T R NL L D I EV+N L ++ +
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK------- 123
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1410
+S+G +Q + +A LL ++L+LDE T +D +++ IR + TVI
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179
Query: 1411 VAH 1413
+H
Sbjct: 180 SSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 52/267 (19%)
Query: 1219 KIELENLLVQYNPTLPMVLK---GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
+I+++N++ +N LP LK ++ + I ++G+TGSGK+T I+ L ++ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1276 GRI--------------LIDGVDISMI----------GLQDLRSRLSIIPQ--DPMLFQG 1309
G I + V ++ ++++R R+ ++ Q + LF+
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1310 TVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVC 1366
T+ ++ P+ +E + ++ E+V D+ L +P S GQ++ V
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLDESYLQRSPF-----ELSGGQKRRVA 175
Query: 1367 LARVLLKKKRILVLDEATASIDTA-TDNV--IQQTIREETSRCTVITVAHRIPTVIDNDL 1423
LA +L + LV DE TA +D + I + ++ T+I V H +DN L
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHD----LDNVL 229
Query: 1424 -----VLVLDEGKVLEYDSPRQLLEDN 1445
+ +GK+++ +L DN
Sbjct: 230 EWTKRTIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-11
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 44/218 (20%)
Query: 1235 MVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1293
VLKGI T GE ++G G+GKSTL++ + +V P G + I G
Sbjct: 25 EVLKGIDFTLHAGEVH-ALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN---------P 74
Query: 1294 RSRLS----------IIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINK--CHLAE 1337
+RL+ ++PQ+P+LF +V+ N+ P Q S Q++ +++ C L
Sbjct: 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD- 133
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA-TDNVIQ 1396
LD+ + V RQ+V + R L++ RIL+LDE TAS+ A T+ +
Sbjct: 134 --------LDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFS 181
Query: 1397 QTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKV 1432
+ IRE ++ ++ ++H++P + D + V+ +G +
Sbjct: 182 R-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 9e-11
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1273
K +ENL + Y LK I P + ++G +G GKSTL++ L R+ +
Sbjct: 3 KFNIENLDLFYGEN--QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1274 SGGRILIDGVDI-SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVIN 1331
G++ +DG DI I + DLR ++ ++ Q P F ++ N+ L + +
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQG------IKD 114
Query: 1332 KCHLAEIVRQDQR----------LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381
K L E+V + R L + S GQ+Q +C+AR + + ++++D
Sbjct: 115 KKVLDEVVERSLRGAALWDEVKDRLKSH----AFGLSGGQQQRLCIARTIAMEPDVILMD 170
Query: 1382 EATASIDTATDNVIQQTIREETSRCTVITVAH 1413
E T+++D + I++ + E T++ V H
Sbjct: 171 EPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 35/220 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA------------AIKVHGKKAYVP 665
+K G+ + G G+GKS+L+ I I G+ I + K V
Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83
Query: 666 QSSWIQTGTIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
Q + GT+++NI +G K++ +Y L LN++ +A D+
Sbjct: 84 QQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---LSIVGLNKE---YATRDVK------- 130
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTT 777
NLSGG+ QR+ +AR + +N +V + D+P SA+D T T + ++ ++ L ++ TV++ T
Sbjct: 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 778 HQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
H +E D + G + + K D + +E+ +
Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229
|
Length = 241 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 45/228 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSS---LLSSIL----GEIPRISGAAIKVHGKKAYV------- 664
+I +G VA+ G GSGKS+ +L+ +L GEI +I G I K +
Sbjct: 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENLK-EIRKKIGII 88
Query: 665 ---PQSSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
P + +I T+ ++I FG K M+ + A +E + D +
Sbjct: 89 FQNPDNQFIGA-TVEDDIAFGLENKKVPPKKMKDIIDD-----LAKKVGMEDYLDKEPQ- 141
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
NLSGGQKQR+ +A + N ++ IFD+ S +D G K+ ++ L K
Sbjct: 142 ------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK-GKREIKKIMVDLRKTRKK 194
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819
T++ TH ++ AD V+V +GK+ GK ++++ ++ E++ + K
Sbjct: 195 TLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK--EILEKAK 240
|
Length = 271 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 38/232 (16%)
Query: 613 KLTDKMKI--MKGSKVAVCGSVGSGKSSLLSSILGEI------------PRISGAAIKVH 658
+L D + + G +A+ G G+GKS+LL ++ GE+ P S ++
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74
Query: 659 GKKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+A +PQ+S + T++E + G+ +S E + Q + A DLS + R
Sbjct: 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL---AATDLSGLAGR 131
Query: 718 GIN-LSGGQKQRIQLAR------AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
LSGG++QR+QLAR + D+P SA+D H + + L Q
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA---H--QHHTLRLARQ 186
Query: 771 KT-----VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
VL H L L A AD ++++ G++ SG +D++ D+ E V
Sbjct: 187 LAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237
|
Length = 259 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 56/278 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
+ G V G+ G+GKS+L+ + L E P SG+ I V G+ + S + R
Sbjct: 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVI-VDGQD--LTTLSNSELTKARRQ 83
Query: 679 I--LFGKDMRQSF----YEEVLEGCAL--------NQDIEMWADGDLSVVG------ERG 718
I +F Q F V AL +I+ L++VG
Sbjct: 84 IGMIF-----QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP 138
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KT 772
NLSGGQKQR+ +ARA+ SN V + D+ SA+D T Q ++ LL + T
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-----TQSILELLKEINRRLGLT 193
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPP 831
+L TH+++ + D V V+ +G++ + G ++ + + L ++ R +L ++ P
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFI--RSTLH-LSIP 250
Query: 832 QEDKCLSRVPCQMSQITEERFAR--PISCGEFSGRSQD 867
++ ++ FA P+ EF+G++ D
Sbjct: 251 ED---------YQERLQATPFADSVPMVRLEFTGQTVD 279
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 60/250 (24%)
Query: 1246 GEKKIGVV-GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR----SRLSII 1300
E +I V+ G +GSGKSTL++ L R++EP+ G IL+DG DI+ + +LR ++S
Sbjct: 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKIS-- 109
Query: 1301 PQDPMLFQG-------TVRTNLD-PLE------QHSDQEIWEVINKCHLAEIVRQDQRLL 1346
M+FQ TV N+ LE ++ E + L + L
Sbjct: 110 ----MVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNEL 165
Query: 1347 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRC 1406
S G +Q V LAR L IL++DEA +A D +I+ +++E
Sbjct: 166 -----------SGGMQQRVGLARALANDPDILLMDEAF----SALDPLIRTEMQDELLEL 210
Query: 1407 ------TVITVAH------RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454
T++ + H RI D + ++ +G++++ +P ++L + ++ + V
Sbjct: 211 QAKLKKTIVFITHDLDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNPANDY---VR 262
Query: 1455 EFLRRTSKSN 1464
+F+R +S
Sbjct: 263 DFVRNVDRSR 272
|
Length = 386 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAY------VPQSSWI-Q 671
A+ G G+GKS+L+ I G +P SG +++ G KA+ VPQ +
Sbjct: 41 ALLGGNGAGKSTLMKIIAGIVPPDSGT-LEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99
Query: 672 TGTIRENILFGKDMRQSFYEEVLE-----GCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+++ENILFG RQ+ +++ + GC L+ D + G L V +
Sbjct: 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS---SAGSLEV----------ADR 146
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQL-EFLD 784
Q +++ R + +S + I D+P +++ LF + + LL+Q +++ +H+L E
Sbjct: 147 QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQ 205
Query: 785 AADLVLVMKDGKIEQSGKYEDLIADQ 810
AD + VM+DG I SGK DL D
Sbjct: 206 LADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ENL+ +Y ++G++ + G++G G+GK+T I+ L +++P+ GR
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS----------DQEIWEV 1329
+ G D+ +++R R+ I+ QD + T + L H+ + I E+
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSVDDEL--TGWENLYIHARLYGVPGAERRERIDEL 115
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
++ L E D V +S G R+ + +AR L+ + +L LDE T +D
Sbjct: 116 LDFVGLLEAA-------DRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP 164
Query: 1390 ATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
T + + I + E T++ H + D V ++D G+++ +P +L
Sbjct: 165 QTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 30/225 (13%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
+L ++ TFP K G++G GSGKSTL++ L R PS G IL+D + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1296 RLSIIPQDPMLFQG-TVRT-----------NLDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1343
+++ +PQ +G TVR L +++ E I+ L +
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA---H 142
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTI 1399
RL+D+ S G+RQ +A ++ + R L+LDE T+++D A ++ +
Sbjct: 143 RLVDS--------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194
Query: 1400 REETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLE 1443
+E TVI V H I D ++ L G+++ +P +L+
Sbjct: 195 QERG--LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 45/217 (20%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
E+ L ++ ++ ++ GE +G+ G G+G++ L +ALF + P+ G I
Sbjct: 6 EVRGL------SVKGAVRDVSFEVRAGEI-VGIAGLVGNGQTELAEALFGLRPPASGEIT 58
Query: 1280 IDGVDISMIGLQD-LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE-VINKCHLAE 1337
+DG ++ +D +R+ ++ +P+D +G V D + E + L
Sbjct: 59 LDGKPVTRRSPRDAIRAGIAYVPEDRKR-EGLV----------LDLSVAENIALSSLL-- 105
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
S G +Q V LAR L + R+L+LDE T +D I +
Sbjct: 106 --------------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145
Query: 1398 TIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKV 1432
IRE V+ ++ + ++ D +LV+ EG++
Sbjct: 146 LIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 52/209 (24%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1273
+IE+ENL ++ +LK + P ++G +G GKST I+ L R+ +
Sbjct: 3 RIEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1274 SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQE---IW 1327
G I +DGVDI + + +LR ++ ++ Q P F ++ N+ L H + + I
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1328 EVINKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E + + A + + + LD + S GQ+Q +C+AR + ++++DE ++
Sbjct: 121 ERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 1387 IDTATDNVIQQTIREETSRCTVITVAHRI 1415
+D + I+ I + T++ V H +
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 27/226 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE N+ Y P L ++ + + + G +G+GK+TL++ L+ + PS G++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1280 IDGVDISMIGLQD-----LRSRLSIIPQD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINK 1332
I G D++ L+ LR R+ ++ QD +L TV N+ PL EV K
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL---------EVRGK 109
Query: 1333 CHLAEIVRQDQRLLDAPVAED-----GENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
EI R+ L E E S G++Q V +AR ++ +L+ DE T ++
Sbjct: 110 KE-REIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1388 DTATDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGK 1431
D I ++ R T + VA +++D V++LD+G+
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+ + +G VA+ G G+GK++LL +I+G +P SG +I+ G+ Y
Sbjct: 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGY 79
Query: 664 VPQSSWIQTG-TIRENILFG-----KDMRQSFYEEVLEGCALNQDI-----EMWADGDLS 712
VP+ I T+ EN+L G + R++ E V E + E
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE-------LFPRLKERR------ 126
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF-----SAVDAHTGTHLFKQCLMGL 767
+ LSGG++Q + +ARA+ S + + D+P V+ +F + + L
Sbjct: 127 --KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIF-EAIREL 178
Query: 768 LSQK-TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
+ T+L F L+ AD V++ G++ G +L+AD
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 37/253 (14%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+E+E+L +Y VLKG++ I ++G +GSGKST ++ + + +PS G I
Sbjct: 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1279 LIDGVDISMIG-------------LQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQ 1324
++G +I + LQ LR+RL ++ Q L+ TV N+ H
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH--- 120
Query: 1325 EIWEVINKCHLAEIVRQDQRLLD-APVAEDGENW----SVGQRQLVCLARVLLKKKRILV 1379
V+ AE + + ++ L +AE + + S GQ+Q V +AR L + +++
Sbjct: 121 ----VLGVSK-AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML 175
Query: 1380 LDEATASIDT----ATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434
DE T+++D V+Q E T++ V H + D + V+ L +GK+ E
Sbjct: 176 FDEPTSALDPELVGEVLKVMQDLAEEGR---TMVVVTHEMGFARDVSSHVIFLHQGKIEE 232
Query: 1435 YDSPRQLLEDNSS 1447
P Q+ + S
Sbjct: 233 EGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 29/221 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSS---LLSSILG-----------EIPRISGAAIK-VHGKK- 661
+ I +G + G GSGKS+ LL+ ++ +I +IS A ++ V KK
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 662 AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQ-DIEMWADGDLSVVGER 717
A V QS + + T+ +N FG ++ EE E AL Q +E +A
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD----- 163
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGLLSQKTVLYT 776
LSGG +QR+ LARA+ N D+ + D+ FSA+D T + + + + Q+T+++
Sbjct: 164 --ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 777 THQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
+H L E + D + +M++G++ Q G ++++ + ++ VR
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 40/216 (18%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS--- 1274
I L+N+ + Y +K + C P K ++G +G GKST++++L R+ +
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1275 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN-------------LDPLE 1319
GR+L DG D+ + ++R R+ ++ Q P F ++ N +D L
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELV 131
Query: 1320 QHSDQE--IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377
+ S ++ +W+ +C +D+ + E G + S GQ+Q +C+AR + + +
Sbjct: 132 ERSLRKAAVWD---EC-------KDK------LNESGYSLSGGQQQRLCIARTIAIEPEV 175
Query: 1378 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
+++DE +++D + I++T+ E T++ V H
Sbjct: 176 ILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 65/236 (27%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP--QDP--MLF 1307
++G +G GKSTL++ L +P+ G+I++DGVD LS +P Q P M+F
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD------------LSHVPPYQRPINMMF 97
Query: 1308 QG-------TVRTNL------DPLEQHS-DQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1353
Q TV N+ D L + + E++ H+ E ++ L
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL------- 150
Query: 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTV----- 1408
S GQRQ V LAR L K+ ++L+LDE ++D + +Q + + R V
Sbjct: 151 ----SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 1409 -------ITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
+T+A RI +++ GK ++ P ++ E ++ +S AEF+
Sbjct: 207 THDQEEAMTMAGRIA---------IMNRGKFVQIGEPEEIYEHPTTRYS---AEFI 250
|
Length = 377 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 21/225 (9%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDI--SMIG 1289
LK I + ++G +G GKST I+ L R+VE PS G+IL +I
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR----- 1344
+++LR+ + ++ Q P F ++ N+ +I + +K L EIV + R
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVT-----YGPKIHGIKDKKTLDEIVEKSLRGAAIW 154
Query: 1345 -LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403
L + ++ S GQ+Q +C+AR L + ++++DE T+++D + +++ ++E
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 1404 SRCTVITVAHRIPTV--IDNDLVLVLDEGKVLEYDSPRQLLEDNS 1446
++I V H + I + L+ G V EYD ++ + S
Sbjct: 215 KDYSIIIVTHNMQQAARISDKTAFFLN-GYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 32/235 (13%)
Query: 1237 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSG---GRILI 1280
+KGI TF G K + G+ G G+GKSTL++ L V P G G I
Sbjct: 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-SGVYPHGTWDGEIYW 62
Query: 1281 DGVDISMIGLQDL-RSRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEI 1338
G + ++D R+ + II Q+ L L E EI + +
Sbjct: 63 SGSPLKASNIRDTERAGIVIIHQELTLVP-----ELSVAENIFLGNEITLPGGRMAYNAM 117
Query: 1339 VRQDQRLL------DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
+ + LL V ++ GQ+QLV +A+ L K+ R+L+LDE ++S+
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET 177
Query: 1393 NVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445
++ IR+ + + ++H++ V D + V+ +G+ + + ED+
Sbjct: 178 EILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDD 232
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KT 772
G+ ++LSGGQ+QR+ +ARA+ +V +FD+P SA+D + + +M L++ KT
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKT 204
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
++ TH++ F + V+ + GKIE+ G E L + S ++Q
Sbjct: 205 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
|
Length = 257 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 38/254 (14%)
Query: 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGK 636
+ S VAID+ + K + + G + G G+GK
Sbjct: 28 EAKASIPGSMSTVAIDLA------GVSKSYGDKAVVNGL-SFTVASGECFGLLGPNGAGK 80
Query: 637 SSLLSSILGEIPRISGAAIKVHG------------KKAYVPQ-SSWIQTGTIRENIL--- 680
S++ ILG +G I V G + VPQ + T+REN+L
Sbjct: 81 STIARMILGMTSPDAGK-ITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG 139
Query: 681 --FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
FG R+ E V+ +E AD +S +LSGG K+R+ LARA+ ++
Sbjct: 140 RYFGMSTREI--EAVIPSLLEFARLESKADARVS-------DLSGGMKRRLTLARALIND 190
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
+ I D+P + +D H HL + L LL++ KT+L TTH +E + D + V++ G+
Sbjct: 191 PQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
Query: 797 IEQSGKYEDLIADQ 810
G+ LI +
Sbjct: 250 KIAEGRPHALIDEH 263
|
Length = 340 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 34/245 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
IE++NL+ +++ VL GI PGE + ++G +GSGK+TL++ + + +P G I
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEV-VAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 1279 LIDGVDISM---IGLQ-----DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE-- 1328
+ + I + Q LR + + Q+ LF RT L+ I E
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPH--RTVLE--------NIIEGP 110
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGEN------WSVGQRQLVCLARVLLKKKRILVLDE 1382
VI K E R L A V G+ S GQ+Q V +AR L + +++ DE
Sbjct: 111 VIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDE 170
Query: 1383 ATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1439
T+++D + TIR+ + R VI V H + D D + +D+G+++E +
Sbjct: 171 PTSALDPELVGEVLNTIRQLAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAK 229
Query: 1440 QLLED 1444
L D
Sbjct: 230 ALFAD 234
|
Length = 250 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 39/203 (19%)
Query: 627 AVCGSVGSGKSSLLSSILG----EIPRIS-----------GAAIKVHGKK-AYVPQSSWI 670
A+ G GSGK+SL++ I G + RI G + ++ YV Q + +
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 671 -QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
T+R N+ +G M +S + +Q + + L + LSGG+KQR+
Sbjct: 88 FPHYTVRGNLRYG--MWKSMRAQ------FDQLVALLGIEHL--LDRYPGTLSGGEKQRV 137
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKT---VLYTTHQL-EF 782
+ RA+ + ++ + D+P +++D K+ ++ L + +LY +H L E
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPR-----KREILPYLERLRDEINIPILYVSHSLDEV 192
Query: 783 LDAADLVLVMKDGKIEQSGKYED 805
L AD V+V+++GK++ SG E+
Sbjct: 193 LRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 33/233 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHGKKAYVPQ 666
K+ +G G G+GK++ + + + SG A KV VPQ
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQ 73
Query: 667 SSWIQTG-TIRENI-----LFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ + T REN+ L+G KD + EE+LE E+ D V
Sbjct: 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL------FELGEAADRPVGT--- 124
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
SGG ++R+ +A ++ DV D+P + +D T + + L + T+L TT
Sbjct: 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-WDYIRALKEEGVTILLTT 181
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829
H +E D D + ++ G+I G E+L + + +SL
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEV 234
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 1220 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I L+N+ Y P L + T +G TGSGKST++Q L + P+ G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1277 RILIDGVDISMIG----LQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWE 1328
+ +D I+ ++ +R ++ ++ Q P LF+ TV ++ P QE E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
+ + LA +V + L + E S GQ + V +A +L + +ILVLDE TA +D
Sbjct: 123 ALAREKLA-LVGISESLFEKNPFE----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 1389 TATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
+ ++ S T++ V H + V + D V VL++GK++ P+ + +D
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 1252 VVGRTGSGKSTLIQALFRVVE--PSG---GRILIDGVDI--SMIGLQDLRSRLSIIPQDP 1304
++G +G GKST ++++ R+ + PS G IL +G++I S I + +LR + ++ Q P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 1305 MLFQGTVRTNLDPLEQHS--------DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356
F ++ N+ +++ D+ + E + K L + V+ RL + ++ G
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD--RLHSSALSLSG-- 167
Query: 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1416
GQ+Q +C+AR L K +L+LDE +++D ++ I++ I E ++I V H +
Sbjct: 168 ---GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 1417 TVID-NDLVLVLDEGKVLEYDSPRQLL 1442
+ +D G ++EYD Q+
Sbjct: 225 QALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 25/213 (11%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQD 1292
VLKG++ + + + +VG +GSGKSTL+ L + P+ G +L +G +S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1293 LRSR-LSIIPQ-DPMLFQGTVRTNLD-PL------EQHSDQEIWEVINKCHLAEIVRQDQ 1343
LR++ L I Q +L T N+ PL + + + +E++ K L +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL------EH 133
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-- 1401
R+ P G G+RQ V +AR L+ + +++ DE T ++D +I + E
Sbjct: 134 RINHRPSELSG-----GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 1402 ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
+ + V H + D VL + +G++
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HGKKAYVPQSSWIQTGTIRENIL 680
G+ + +CG G GKSSL ILGE+ + G + GK YVPQ ++ GT+R+ I+
Sbjct: 478 GNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQII 536
Query: 681 --------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
+ + E++L+ L +E +G S V + LSGG+KQRI +A
Sbjct: 537 YPDSSEDMKRRGLSDKDLEQILDNVQLTHILE--REGGWSAVQDWMDVLSGGEKQRIAMA 594
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGL----LSQKTVL--YTTHQLEF 782
R Y I D+ SAV ++++ C G+ +S + L Y + L
Sbjct: 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM 651
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-10
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSRLSII 1300
+PGE + +VG +GSGKST +AL R+VE GG I+ +G I + LQ LR + I
Sbjct: 348 WPGET-LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406
Query: 1301 PQDPMLFQGTVRTNLDPLEQ--HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW- 1357
QDP +LDP + S E V + LL+ W
Sbjct: 407 FQDPY-------ASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459
Query: 1358 -----SVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
S GQRQ +C+AR L ++++ DEA +++D +
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
Length = 623 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 46/226 (20%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---- 1275
I++ NL Y+ +L+G++ K ++G +G GKST ++ L R+ E
Sbjct: 8 IKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65
Query: 1276 -GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN---------------LDP 1317
GR+ +I + L LR ++S++ P LF +V N +D
Sbjct: 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD 125
Query: 1318 LEQHS--DQEIW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1374
+ + + D ++W E+ +K H + + + S GQ+Q +C+AR L K
Sbjct: 126 IVESALKDADLWDEIKHKIHKSAL-----------------DLSGGQQQRLCIARALAVK 168
Query: 1375 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV 1418
++L++DE +D ++ I+ S T++ V+H + V
Sbjct: 169 PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-10
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 15/209 (7%)
Query: 625 KVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSWIQ 671
KV V G G+GKSS+L+++ G I I + G + +PQS +
Sbjct: 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
+GT+R NI + + E LE + I+ G + V E G N S GQ+Q + L
Sbjct: 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
ARA+ S + + D+ ++VD T + L ++ + T+L H+L + D +LV
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDS-LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV 1441
Query: 792 MKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ G++ + ++L++ S R + +
Sbjct: 1442 LSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470
|
Length = 1495 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ LEN+ V + VL ++ K + ++G G+GKSTL++ + +V P G I
Sbjct: 5 VSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI- 61
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQ----DPMLFQGTVR-TNLDPLEQHSDQEIWEVINKCH 1334
++ + R+ +PQ D L R L P + D I + +
Sbjct: 62 ----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED--ILPALKRV- 108
Query: 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT----A 1390
Q L+DAP+ + S G+ Q V LAR LL + ++LVLDE T +D A
Sbjct: 109 ------QAGHLIDAPM----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 1391 TDNVIQQTIREETSRCTVITVAHRIPTVI-DNDLVLVLDE 1429
++I Q +R E C V+ V+H + V+ D VL L+
Sbjct: 159 LYDLIDQ-LRRELD-CAVLMVSHDLHLVMAKTDEVLCLNH 196
|
Length = 251 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 5e-10
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 25/208 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----------RISGAAIKVHGKKAYVPQSS 668
I +G + G G+GKS++ +LG I + A VPQ
Sbjct: 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFD 86
Query: 669 WIQTG-TIRENIL-FGKDMRQSF--YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+ T+REN+L FG+ S E V+ +E AD ++ LSGG
Sbjct: 87 NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA-------LLSGG 139
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFL 783
K+R+ LARA+ ++ + I D+P + +D H HL + L LL++ KT+L TTH +E
Sbjct: 140 MKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEA 198
Query: 784 DA-ADLVLVMKDGKIEQSGKYEDLIADQ 810
+ D + V++ G+ G+ LI +Q
Sbjct: 199 ERLCDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 28/233 (12%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI------- 1288
VLKG++ I ++G +GSGKST ++ + + +PS G I+++G I+++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1289 ------GLQDLRSRLSIIPQDPMLFQG-TVRTNL--DPLE--QHSDQEIWEVINKCHLAE 1337
L+ LR+RL+++ Q L+ TV N+ P++ S QE E K +LA+
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK-YLAK 138
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA-TDNV-- 1394
+ ++ PV G GQ+Q V +AR L + +L+ DE T+++D V
Sbjct: 139 VGIDERAQGKYPVHLSG-----GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
Query: 1395 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1447
I Q + EE V+T + + V+ L +GK+ E +P QL + S
Sbjct: 194 IMQQLAEEGKTMVVVTHEMGFARHVSSH-VIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGR 1277
E+++L V+ +LKG+ T GE ++G GSGKSTL + E + G
Sbjct: 5 EIKDLHVEVEGKKE-ILKGVNLTVKEGEVHA-IMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
Query: 1278 ILIDGVDISMIGLQDL----RSRLSIIP--QDPMLFQGTVRTNLDPL-----EQHSDQEI 1326
IL DG DI +L R+R I Q P+ G TN D L + + I
Sbjct: 63 ILFDGEDIL-----ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGI 115
Query: 1327 WEVINK--CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
K AE++ D+ L+ V E +S G+++ + ++LL + ++ +LDE
Sbjct: 116 LPEFIKELKEKAELLGLDEEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172
Query: 1385 ASID-TATDNVIQ--QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
+ +D A V + +REE +IT R+ I D V VL +G++++
Sbjct: 173 SGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1309
IG++G G GK+T I+ L V++P G I I+ +S I ++G
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY-------IKAD----YEG 76
Query: 1310 TVRTNL-DPLEQHSDQEIW--EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366
TVR L + + E+ + +I+ D+ + + S G+ Q V
Sbjct: 77 TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL--DREVPEL---------SGGELQRVA 125
Query: 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID--ND 1422
+A L K I +LDE +A +D + + IR E + T V H I +ID D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLAD 184
Query: 1423 LVLVLDEGKVLEYD--SPRQLLEDNSSSFSKLVAEFLRRTSKSNRNR 1467
++V + G+ +P Q L + F K + RR ++ R R
Sbjct: 185 RLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPR 230
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 7e-10
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 59/181 (32%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I G ++ + G G+GKS+LL I GE+ G
Sbjct: 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG------------------------- 55
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
+ +G ++ ++E+ LSGG+K R+ LA+ +
Sbjct: 56 IVTWGSTVKIGYFEQ----------------------------LSGGEKMRLALAKLLLE 87
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDG 795
N ++ + D+P + +D + L L TV+ +H FLD A ++ ++DG
Sbjct: 88 NPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143
Query: 796 K 796
K
Sbjct: 144 K 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 8e-10
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 31/225 (13%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
V++ ++ T + +G++G G+GK+T + +V G I+ID DIS++ L R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1296 RLSI--IPQDPMLFQG-TVRTNLDPL---------EQHSDQ--EIWEVINKCHLAEIVRQ 1341
R I +PQ+ +F+ +V NL + EQ D+ E+ E + HL + +
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-- 134
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
G++ S G+R+ V +AR L + ++LDE A +D + I++ I
Sbjct: 135 ------------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182
Query: 1402 -ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
S V+ H + + + ++ +G ++ + +P ++L+D
Sbjct: 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 1210 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1269
S + KI++ NL Y LK I + +G +G GKSTL++ R
Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61
Query: 1270 VVE--P---SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS 1322
+ E P + G IL+DG +I + LR+++ ++ Q P F ++ N+ +
Sbjct: 62 MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRL- 120
Query: 1323 DQEIWEVINKCHLAEIVRQDQRLLDAPV--------AEDGENWSVGQRQLVCLARVLLKK 1374
+E +++ + E R + L A + + G + S GQ+Q +C+AR + +
Sbjct: 121 ----FEKLSRAEMDE--RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIR 174
Query: 1375 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
+L+LDE +++D + I++ I E TV+ V H
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 24/212 (11%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
VL + P + + VVGR+G GKSTL++ L + PS G +L L + R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-----LAEARE 81
Query: 1296 RLSIIPQDPMLFQ-GTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1353
++ QD L V N+ L+ + + LA+ R + P A
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD------RANEWPAALS 135
Query: 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITV 1411
G GQ+Q V LAR L+ + +L+LDE ++D T +Q I + TV+ V
Sbjct: 136 G-----GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190
Query: 1412 AHRIP-TVIDNDLVLVLDEGKV---LEYDSPR 1439
H + V D VL+++EGK+ L D PR
Sbjct: 191 THDVSEAVAMADRVLLIEEGKIGLDLTVDLPR 222
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 42/223 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---IQTG--- 673
+ +G VA+ G GSGKS+L + G + +G I V G ++ W Q G
Sbjct: 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMV-LSEETVWDVRRQVGMVF 87
Query: 674 ----------TIRENILFGKDMRQSFYEEVLEGC--ALNQ-DIEMWADGDLSVVGERGIN 720
T+++++ FG + EE++E AL Q +E + + +
Sbjct: 88 QNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-------R 140
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-------TGTHLFKQCLMGLLSQKTV 773
LSGGQKQR+ +A + D+ I D+ S +D T L +Q + TV
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI------TV 194
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
L TH L+ AD V+VM G+I + G E+ I L
Sbjct: 195 LSITHDLDEAAQADRVIVMNKGEILEEGTPEE-IFKSGHMLQE 236
|
Length = 279 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-------- 671
I +GSK A+ G G+GKS+LL + G I +KV G++ W++
Sbjct: 28 IPEGSKTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86
Query: 672 -------TGTIRENILFG-KDMRQSFYEEVLE--GCALNQDIEMWADGDLSVVGERGINL 721
+ T+ +++ FG +M +EV AL + MW D + +L
Sbjct: 87 DPDDQVFSSTVWDDVAFGPVNMGLD-KDEVERRVEEALKA-VRMWDFRD-----KPPYHL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQL 780
S GQK+R+ +A + + DV + D+P + +D G + L L +Q KTV+ TH +
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP-RGQETLMEILDRLHNQGKTVIVATHDV 198
Query: 781 EF-LDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+ + AD V+V+K+G++ G L +
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 32/221 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------KKA-----Y 663
+++ G V + G G+GK++ I+G + SG I + K+A Y
Sbjct: 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK-ILLDDEDITKLPMHKRARLGIGY 83
Query: 664 VPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV---GERGI 719
+PQ + I T+ +NI+ ++R+ ++ L+ +E + + +
Sbjct: 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLE-----EFHITHLRDSKAY 138
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+LSGG+++R+++ARA+ +N + D+PF+ VD + Q ++ L + VL T
Sbjct: 139 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI--QRIIKHLKDRGIGVLITD 196
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H + E LD D ++ DGK+ G E+++ N+E VR+
Sbjct: 197 HNVRETLDICDRAYIISDGKVLAEGSPEEIV---NNEDVRR 234
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHGKKA-----YVPQS 667
+G V + G G+GK++ I+G + SG + +H K+A Y+PQ
Sbjct: 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRARLGIGYLPQE 83
Query: 668 SWIQTG-TIRENIL-------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ I T+ ENIL K R+ EE+LE I + +
Sbjct: 84 ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE----EFHIT-------HLRKSKAS 132
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+LSGG+++R+++ARA+ +N + D+PF+ VD + Q ++ +L + VL T
Sbjct: 133 SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI--QKIIKILKDRGIGVLITD 190
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H + E L D ++ +GK+ G E++ A+ ELVR+
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN---ELVRK 228
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 39/236 (16%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-----MIGL 1290
LK I+ +++G++G G+GKSTL++ + + +P+ G++ + G ++ G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPLIELGAGF 100
Query: 1291 Q-DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
+L R +I + L G R + D+++ E+I L + +D P
Sbjct: 101 DPELTGRENIYLR--GLILGLTR-------KEIDEKVDEIIEFAELGD-------FIDQP 144
Query: 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA----TDNVIQQTIREETSR 1405
V + +S G + + + IL+LDE A D A + + + +
Sbjct: 145 V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-- 198
Query: 1406 CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
T++ V+H + + D + L+ G++ SP +++ ++ + +A+ L
Sbjct: 199 -TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP----AYEEDLADRLSLN 249
|
Length = 249 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 37/267 (13%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
G N ++ I+ P + +G +G G+GKST ++ L ++ P+
Sbjct: 19 EPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS 78
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSD----QEIWEVI 1330
G++ ++G D R R + ++ + L L + I+E+
Sbjct: 79 GKVRVNGKD-------PFRRREEYLRSIGLVM--GQKLQLWWDLPALDSLEVLKLIYEIP 129
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLDEATA 1385
+ AE + +LD E W S+GQR LA LL ++L LDE T
Sbjct: 130 DD-EFAERLDFLTEILDL---EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185
Query: 1386 SIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDNDL------VLVLDEGKVLEYDS 1437
+D I++ ++E TV+ H I +D+ VL++D+G+++ +D
Sbjct: 186 GLDVNAQANIREFLKEYNEERQATVLLTTH-----IFDDIATLCDRVLLIDQGQLV-FDG 239
Query: 1438 PRQLLEDNSSSFSKLVAEFLRRTSKSN 1464
L++ + + E + S S
Sbjct: 240 TLAQLQEQFGPYKEFSVELKQAKSLSQ 266
|
Length = 325 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL---GEIP--RISGAAIKVHGKKAYVP------- 665
MKI K A+ G G GK++LL SI IP R+ G I G+ Y P
Sbjct: 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVTEY 82
Query: 666 --------QSSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
Q +I +N+ FG K EE L+ AL +++
Sbjct: 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK----- 137
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
S + + G LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ L L
Sbjct: 138 --SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP-IATQRIEKLLEELSE 194
Query: 770 QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + + + AD + M G++ + G +++ ++L +
Sbjct: 195 NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEE 243
|
Length = 250 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF- 681
G + V G GSGK++LL + G P ++G + Q +I +L+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL-------LNGGPLDFQRDSIARGLLYL 78
Query: 682 ----GKDMRQSFYEEVLEGCALNQDIEMW---ADGDLSVVGERGIN-LSGGQKQRIQLAR 733
G S E + A + D ++ A L+ +R + LS GQ++R+ LAR
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALAR 138
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQ 779
+ S ++I D+P +A+D G F + + G ++ V+ TTHQ
Sbjct: 139 LLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD- 1303
GE +G++G G+GK+TL++A+ ++ P+ G + + G + +PQ
Sbjct: 5 KGEL-LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVPQRH 58
Query: 1304 ------PMLFQGTV---RTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354
P+ TV RT + + + V L D PV E
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR--DALRRVGL-TELADRPVGE-- 113
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVAH 1413
S GQRQ V +AR L + +L+LDE +D T ++ + E + ++ H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 1414 RIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
+ + +VL G+V+ +P+QL +
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 27/218 (12%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
K KG VA+ G G+GKS+L G I + + + + G+ + S ++ +R+
Sbjct: 24 KAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSLLE---VRKT 79
Query: 679 --ILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVGERGI------NLS 722
I+F Q F V E A LN +++E L VG G +LS
Sbjct: 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL 780
GGQK+R+ +A + ++ + D+P S +D + + K L+ L+++ T++ +TH +
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDLNKEGITIIISTHDV 197
Query: 781 EFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ + AD V VM DGKI + G +++ +D E +R+
Sbjct: 198 DLVPVYADKVYVMSDGKIIKEGTPKEVFSD--IETIRK 233
|
Length = 275 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP----QSSWI--QTG--- 673
G + + G GSGK++LL I G +P +G IK+ G P ++ +
Sbjct: 28 GEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYLGHRNAMKP 86
Query: 674 --TIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
T+ EN+ F + LE L + L LS GQK+R
Sbjct: 87 ALTVAENLEFWAAFLGGEELDIAAALEAVGL-APLA-----HL-----PFGYLSAGQKRR 135
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHT 755
+ LAR + SN ++I D+P +A+DA
Sbjct: 136 VALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 35/228 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V + G GSGKS+LL I ++ I+ + V G K P+ + IR+
Sbjct: 22 LNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDGLKVNDPK---VDERLIRQ 77
Query: 678 N--ILFGKDMRQSFY--------EEVLEG-----CALNQDIEMWADGDLSVVG--ERG-- 718
++F Q FY E V+ G A ++ E A L+ VG ER
Sbjct: 78 EAGMVF-----QQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH 132
Query: 719 --INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVL 774
LSGGQ+QR+ +ARA+ + +FD+P SA+D + K +M L+++ T++
Sbjct: 133 YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK--VMQDLAEEGMTMV 190
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
TH++ F A ++ + G+I + G + LI + S+ +++ H
Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQH 238
|
Length = 240 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 1252 VVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDISMIGLQD---LRSRLSIIPQD 1303
++G +G GKST ++A+ R+ + PS G ++ DG DI D LR ++ ++ Q
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG-KFTDEVLLRKKIGMVFQK 128
Query: 1304 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR---LLDAPVAEDGEN---W 1357
P F ++ N+ + + +K L EIV + R L D +N
Sbjct: 129 PNPFPKSIFDNI-----AYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL 183
Query: 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPT 1417
S GQ+Q +C+AR L + IL+LDE T+++D I+ I+E T++ V H +
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243
Query: 1418 VID-NDLVLVLDEGKVLEYDSPRQLL 1442
+D + EG ++E+ QL
Sbjct: 244 ASRVSDYTMFFYEGVLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 35/225 (15%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMI---GLQDLRS-RLSIIPQ 1302
+G+VG +GSGKS AL ++ +G G +G +I + L LR+ ++S+I Q
Sbjct: 45 LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQ 104
Query: 1303 DPMLFQGTVRTNLDPLEQHSDQ--EIWEVINKCHLAEIVRQDQRLLDA---PVAEDGEN- 1356
DPM T+L+P + +Q E+ + AE + R+LDA P A
Sbjct: 105 DPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157
Query: 1357 ----WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE---ETSR---C 1406
+S G RQ V +A LL + ++L+ DE T TA D +Q I E R
Sbjct: 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPT----TALDVTVQAQIMTLLNELKREFNT 213
Query: 1407 TVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450
+I + H + V D VLV+ G+ +EY + R + S +S
Sbjct: 214 AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYS 258
|
Length = 330 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+G + + G GSGKS+L ++L IP R G I +K P +Q
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQ----- 366
Query: 677 ENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVG---ERGIN-------- 720
++F R + + + EG +++ A+ D V+ E G++
Sbjct: 367 --VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC----LMGLLSQK--- 771
SGGQ+QRI +ARA+ ++ + D+P SA+D Q L+ L QK
Sbjct: 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGL 478
Query: 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ L+ +H L + A V+VM+DGKI + G E + A+ E R + A
Sbjct: 479 SYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528
|
Length = 534 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ L+ + +Y LPM + + ++G +G+GKSTL+ + +EP+ G I
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTN----LDP---LEQHSDQEIWEVIN 1331
++ + GL + +S++ Q+ LF TVR N L P L +++ +
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ 114
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
+ +A+ + RL E S GQRQ V LAR L++ IL+LDE +++D
Sbjct: 115 QVGIADYL---DRL--------PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163
Query: 1392 DN----VIQQTIREETSRCTVITVAHRIPTVIDN-DLVLVLDEGKV 1432
+++Q E + T++ V H + + V+ +GK+
Sbjct: 164 REEMLALVKQLCSER--QRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------KAYVPQSSWI--QTG- 673
G + + G G+GK++LL + G + R + G+ ++Y ++ Q G
Sbjct: 28 GEALQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 674 ----TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSG 723
T EN+ F + S + AL Q VG G+ LS
Sbjct: 87 KTELTALENLHFWQRFHGSGNAATIWE-ALAQ------------VGLAGLEDLPVGQLSA 133
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTTH 778
GQ++R+ LAR S + ++I D+PF+A+D L L++ VL TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEG-----VALLTALMAAHAAQGGIVLLTTH 188
Query: 779 QLEFLDAADLVLV 791
Q + +A + +
Sbjct: 189 QPLPIASAQIRRL 201
|
Length = 209 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 54/283 (19%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGR 1277
IE++NL +++ VLK I+ T + +G++GR+G+GKS L+ L + EP+ GR
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1278 IL---------------------------------IDGVDISMIGLQDLRSRLSIIPQDP 1304
I+ +D ++S + +R R++I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1305 MLFQG--TVRTN-LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361
G TV N L+ LE+ + V L E+V+ R+ +A D S G+
Sbjct: 119 FALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH--IARD---LSGGE 173
Query: 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVI 1419
+Q V LAR L K+ + + DE T ++D T ++ + E + S +++ +H P VI
Sbjct: 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVI 232
Query: 1420 DN--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
++ D + L+ G++ E +P ++ + F + V+E +
Sbjct: 233 EDLSDKAIWLENGEIKEEGTP----DEVVAVFMEGVSEVEKEC 271
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQK+R+ +A + ++ IFD+P + +D + + L + KTV TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 781 E-FLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
E L+ AD V+VM GKI ++G ++ DQ
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 34/243 (13%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITC-TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
S I+ N+ +Y L V+ G++ GE G++G G+GK+T ++ L + P
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGEC-FGLLGPNGAGKTTTLRMLLGLTHPD 60
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQ----DPMLFQGTVRTNLDPLEQH---SDQEIW 1327
G I + G + R R+ ++PQ DP TVR NL ++ S
Sbjct: 61 AGSISLCGEPVPSRARH-ARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAAR 116
Query: 1328 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
++ L E + + + DA V E S G ++ + LAR L+ +LVLDE T +
Sbjct: 117 ALVPP--LLEFAKLENKA-DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169
Query: 1388 DTATDNVIQQTIREETSRCTVITV-------AHRIPTVIDNDLVLVLDEGKVLEYDSPRQ 1440
D +++ + +R +R I + A R+ D + V++EG+ + +P
Sbjct: 170 DPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHA 224
Query: 1441 LLE 1443
L+E
Sbjct: 225 LIE 227
|
Length = 306 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 46/241 (19%)
Query: 1184 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK-IELENLLVQYNPTLPMVLKGITC 1242
K+ + + P E + P P +E EN+ Y+ +LK ++
Sbjct: 289 KLEARLAEER----PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRL-LLKDLSF 343
Query: 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI--I 1300
+I +VG G+GKSTL++ L + P G + + + I
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-------------GETVKIGYF 390
Query: 1301 PQDPMLFQGTVRTNLDPLEQHSD--QEIWEVINKCHLA------EIVRQDQRLLDAPVAE 1352
Q + + + LE+ S+ + E + +L E + +L
Sbjct: 391 DQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVL------ 440
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1412
S G++ + LA++LL+ +L+LDE T +D + +++ + + TV+ V+
Sbjct: 441 -----SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG--TVLLVS 493
Query: 1413 H 1413
H
Sbjct: 494 H 494
|
Length = 530 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296
LKG+ T + I ++G +G GKSTL+ + + +P+ G ++++G I+ G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------- 53
Query: 1297 LSIIPQDPMLFQG-------TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
P ++FQ TVR N+ + + ++K IV + L+
Sbjct: 54 ----PDRMVVFQNYSLLPWLTVRENI----ALAVDRVLPDLSKSERRAIVEEHIALVGLT 105
Query: 1350 VAEDGE--NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSR 1405
A D S G +Q V +AR L + ++L+LDE ++D T +Q+ + + E R
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1406 CTVITVAHRI-PTVIDNDLVLVLDE------GKVLEYDSPR 1439
TV+ V H + ++ +D V++L G++LE PR
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPR 206
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-09
Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 29/255 (11%)
Query: 1210 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKI--------------GVVGR 1255
E G E + + T+ + L G++ ++ G+K + G++G
Sbjct: 17 SPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGP 75
Query: 1256 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ-DPMLFQGTVRTN 1314
G+GKST+ + + + P G+I + GV + + R+R+ ++PQ D + + TVR N
Sbjct: 76 NGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVREN 134
Query: 1315 LDPLEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371
L ++ S +EI VI L E R + + DA V++ S G ++ + LAR L
Sbjct: 135 LLVFGRYFGMSTREIEAVIPS--LLEFARLESKA-DARVSD----LSGGMKRRLTLARAL 187
Query: 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDE 1429
+ ++L+LDE T +D ++I + +R +R I + + D + VL+
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247
Query: 1430 GKVLEYDSPRQLLED 1444
G+ + P L+++
Sbjct: 248 GRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 40/193 (20%)
Query: 633 GSGKSSLLSSILGEIPRISGAAIKVHGKKA------------YVPQSSWIQTGTIRENIL 680
G+GK++L+ + P SG I++ G+ Y+PQ
Sbjct: 35 GAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIGYLPQ-----------EFG 82
Query: 681 FGKDMRQSFYEEVLEGCALNQDI----------EMWADGDLSVVGERGIN-LSGGQKQRI 729
+ E L+ A + I E+ +L ++ I LSGG ++R+
Sbjct: 83 VYPNFTV---REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADL 788
+A+A+ + + I D+P + +D F+ L L + V+ +TH +E +++ +
Sbjct: 140 GIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQ 198
Query: 789 VLVMKDGKIEQSG 801
V V+ GK+ G
Sbjct: 199 VAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-09
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 40/202 (19%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYVP----QS 667
+ + G VG+G++ L ++ G P SG I + GK AYVP
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGE-ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 668 SWIQTGTIRENILF---GKDMRQSFY---EEVLEGCALNQDIEMWADGDLSVVGERGINL 721
+ +I ENI + R+ +E + + + +G L
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TL 402
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYT 776
SGG +Q++ LAR + ++ V I D+P +D G K + L+ + K +L
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGID--VGA---KAEIYRLIRELAAEGKAILMI 457
Query: 777 THQL-EFLDAADLVLVMKDGKI 797
+ +L E L +D +LVM++G+I
Sbjct: 458 SSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 5e-09
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 61/233 (26%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAI----------------KVH 658
++ KG + + G GSGKS L +I+G +P RI G I K+
Sbjct: 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIR 86
Query: 659 GKK-AYVPQSSWIQTG-----TIRENIL------FGKDMRQSFYEEVLEGCALNQDIEMW 706
GK+ A + Q T TI + I ++ E +E L
Sbjct: 87 GKEIAMIFQDP--MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIE--LLEL----- 137
Query: 707 ADGDLSVVG----ERGIN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757
VG ER + LSGG +QR+ +A A+ N + I D+P +A+D
Sbjct: 138 -------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 758 HLFKQCLMGLLSQK--TVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLI 807
+ L L +K ++ TH L + + AD V VM G+I + G E++
Sbjct: 191 QILDL-LKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 53/225 (23%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWIQTG 673
+ +G +VA+ G G+GKS+LL+ I G + SG+ + ++G+ + P S Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 674 ------TIRENILFGKDMRQSFYEEVLEGCALN-------QDI--EMWADGDLS-VVGER 717
T+ +NI G + G LN I +M + L+ + G+
Sbjct: 81 NLFSHLTVAQNIGLGLN----------PGLKLNAAQREKLHAIARQMGIEDLLARLPGQ- 129
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QK 771
LSGGQ+QR+ LAR + + + D+PFSA+D +Q ++ L+S Q
Sbjct: 130 ---LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRQEMLTLVSQVCQERQL 181
Query: 772 TVLYTTHQLEFLDAADLV---LVMKDGKIEQSGKYEDLIADQNSE 813
T+L +H LE DAA + LV+ DG+I G ++L++ + S
Sbjct: 182 TLLMVSHSLE--DAARIAPRSLVVADGRIAWDGPTDELLSGKASA 224
|
Length = 232 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-09
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGG-------------RILIDGVDISMIGLQDLR-S 1295
+ +VG +GSGKS AL R++E +GG R +I+ + S ++ +R +
Sbjct: 45 LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGA 104
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA----EIVRQDQRLLDA--- 1348
+++I Q+PM T+L+P+ +Q I E I + H E + + +R+LD
Sbjct: 105 DMAMIFQEPM-------TSLNPVFTVGEQ-IAESI-RLHQGASREEAMVEAKRMLDQVRI 155
Query: 1349 PVAED-----GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR--E 1401
P A+ S G RQ V +A L + +L+ DE T ++D I Q I+ +
Sbjct: 156 PEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ 215
Query: 1402 ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441
+ VI + H + V + D VLV+ +G+ +E S Q+
Sbjct: 216 KEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 51/213 (23%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
+LK I+ +F PG KIGV+G G+GKSTL+ RI+ GVD G
Sbjct: 20 ILKDISLSFFPG-AKIGVLGLNGAGKSTLL------------RIMA-GVDKEFNGEARPA 65
Query: 1295 SRLSI--IPQDPMLFQG-TVRTN-----------LDPLEQHSDQ---------------- 1324
+ + +PQ+P L TVR N LD + S +
Sbjct: 66 PGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQA 125
Query: 1325 EIWEVINKCHLAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380
E+ E+I+ ++ R+ + +DA P D S G+R+ V L R+LL K +L+L
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLL 185
Query: 1381 DEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
DE T +D + ++Q ++E TV+ V H
Sbjct: 186 DEPTNHLDAESVAWLEQHLQEYPG--TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 6e-09
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS---GGRILIDGVDI--SMIG 1289
LK I + P + ++G +G GKST I+ L +++ P+ G + +G +I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1290 LQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1347
L +LR + ++ Q F ++ N+ P I NK L EIV ++ L D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIV--EKSLKD 138
Query: 1348 APVAEDGEN--------WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTI 1399
+ ++ ++ S GQ+Q +C+AR L +L++DE T+++D + I++ I
Sbjct: 139 VALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
Query: 1400 REETSRCTVITVAH 1413
+ + T++ V H
Sbjct: 199 LKLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-09
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 20/210 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AY-----------VP 665
+I KV + G GSGKS+LL + + + + G I+V+G++ AY +P
Sbjct: 1332 RIAPREKVGIVGRTGSGKSTLLLTFM-RMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLS 722
Q + GT+R+N+ ++ EV LE L + + ++G S V E G N S
Sbjct: 1391 QDPVLFDGTVRQNV---DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS 1447
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GQ+Q + +ARA+ +I D +A + +M S TV+ H+L
Sbjct: 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+ D ++VM G + + G +L+ ++ S
Sbjct: 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537
|
Length = 1560 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 7e-09
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYV 664
+ KG A+ G G+GKS+L+ + G SG I+V GK+ V
Sbjct: 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIRLGIGMV 84
Query: 665 PQS-SWIQTGTIRENILFGK--------DMRQSFYEEVLEGCA-LNQDIEMWAD-GDLSV 713
Q + T T+ ENI+ G D RQ+ + E ++ A DLSV
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA-RARIKELSERYGLPVDPDAKVADLSV 143
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
G++QR+++ +A+Y + + I D+P + + LF+ ++ L+ K
Sbjct: 144 ----------GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEGK 191
Query: 772 TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830
T+++ TH+L E + AD V V++ GK+ G + + EL M L V P
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRGKV--VGTVDPVAETTEEELAELMVGREVVLRVVKP 249
Query: 831 P 831
P
Sbjct: 250 P 250
|
Length = 501 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 593 IEAGEYAWDAREEN-FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI-----LG 645
+GE +AR+ N F L D M I + A+ G G GKS+ L I L
Sbjct: 33 ASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLI 92
Query: 646 EIPRISGAAIKVHGKKAY---------------VPQSSWIQTGTIRENILFGKDMR---- 686
+ R+ G + GK Y V Q +I +N+ +G ++
Sbjct: 93 DAARVEGE-LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG 151
Query: 687 --QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744
EE L AL +++ D G++LSGGQ+QR+ +ARA+ + +V +
Sbjct: 152 DIDERVEESLRRAALWDEVKDQLD-------SSGLDLSGGQQQRLCIARAIAPDPEVILM 204
Query: 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-----------FLDAADLVLVMK 793
D+P SA+D T + + L + TV+ TH ++ FL +LV
Sbjct: 205 DEPASALDP-VATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263
Query: 794 DGKI---EQSGKYEDLI 807
KI +S + ED I
Sbjct: 264 TDKIFENPESQRVEDYI 280
|
Length = 285 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 7e-09
Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 25/240 (10%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1273
K+E +NL + Y L I K ++G +G GKST ++ L R+ +
Sbjct: 4 KMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 1274 SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPL------EQHSD 1323
G +L+DG +I + + +LR R+ ++ Q P F ++ N+ P ++ D
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+ + + K L + V+ D + + S GQ+Q +C+AR + K ++++DE
Sbjct: 122 KIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 1384 TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442
T+++D + I+ + E T++ V H + +D G ++E++ ++
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-09
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFR------VVEPSGGRILIDGVDISMI 1288
+KGI+ GE + +VG +GSGKS ++ PSG IL DG D+
Sbjct: 25 AVKGISFDIEAGET-LALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAA 82
Query: 1289 GLQDLR----SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCH---------- 1334
+ LR +++ +I Q+PM T+L+PL Q + EV+ + H
Sbjct: 83 SERQLRGVRGNKIGMIFQEPM-------TSLNPLHTIGKQ-LAEVL-RLHRGLSRAAARA 133
Query: 1335 ----LAEIV--RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
L E+V + ++ LDA E S GQRQ V +A L + +L+ DE T ++D
Sbjct: 134 RALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
I ++E ++ + H + V D V V+ G+++E + L
Sbjct: 190 VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 9e-09
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 1166 NLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK---NSRPS------PEWPS 1216
NLN L A I++ NK +R + +P + +K N + + ++
Sbjct: 21 NLNELDAKAIYDEFQKLNKY---QRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNH 77
Query: 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---VEP 1273
+ E+ N Y VL + K +G +G GKST ++ L ++ +E
Sbjct: 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG 137
Query: 1274 SG--GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHS---DQEI 1326
+ G I G + I +LR+R+ ++ Q P F+ ++ N+ +++ D++I
Sbjct: 138 TSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKI 197
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
E I + L D+ D A G S GQ+Q +C+AR + + +L++DE T++
Sbjct: 198 LEKIVEKSLKSAALWDEVKDDLDKA--GNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 1387 IDTATDNVIQQTIREETSRCTVITVAHRI 1415
+D I++ I E + ++I V H +
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 9e-09
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 18/238 (7%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKK---IGVVGRTGSGKSTLIQALFRVVEPSGG 1276
I+ E + Y P P + + KK ++G TGSGKSTL+Q L +++P+ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1277 RILIDGVDISMIGLQD----LRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWE 1328
++ + + +S Q +R ++ ++ Q P LF+ TV ++ P +E E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
I L + D+ +P G GQ + V +A +L + +LVLDE TA +D
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFELSG-----GQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1389 TATDNVIQQTIRE-ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
+ Q S TV+ V H + V D D V +L++G ++ +P + ++
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I K A+ G G GKS+LL + L R+ G + + GK Y P+ ++
Sbjct: 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE-VLLDGKNIYDPKVDVVEL 86
Query: 672 --------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
+I +N+ +G K++ + E L+ AL W +
Sbjct: 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE-IVESSLKKAAL------WDE- 138
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ +
Sbjct: 139 ----VKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEELIT 193
Query: 766 GLLSQKTVLYTTHQLEFLDAA---DLVLVMKDGKIEQSGKYEDL 806
L + T++ TH ++ AA D G++ + G + +
Sbjct: 194 ELKKKYTIVIVTHNMQ--QAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----KAYVPQSSWIQTGTIRE 677
+G +A+ G GSGKS+L + G I SG I ++ Y +S I+
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE-ILINDHPLHFGDYSFRSKRIRMIFQDP 96
Query: 678 NILFGKDMRQSFYEEVLEG-CALNQDIEMWADGD-----LSVVG------ERGIN-LSGG 724
N +R ++L+ LN D+E L +VG + L+ G
Sbjct: 97 NTSLNPRLRIG---QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPG 153
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQLE 781
QKQR+ LARA+ + I D+ +++D + L LM L +K + +Y T +
Sbjct: 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVTQHIG 211
Query: 782 FLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ +D VLVM +G++ + G D++A EL +++
Sbjct: 212 MIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRL 249
|
Length = 267 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-08
Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 76/236 (32%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+++ +G VA+ G G+GK++LL +I+G + SG I G+ AY
Sbjct: 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR-IIFDGEDITGLPPHERARLGIAY 82
Query: 664 VPQSSWI-QTGTIRENILFG------KDMRQSFYEEVLE-----GCALNQDIEMWADGDL 711
VP+ I T+ EN+L G K+ ++ EEV E NQ
Sbjct: 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQ---------- 132
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---- 767
R LSGG++Q + +ARA+ S + + D+P GL
Sbjct: 133 -----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPS----------------EGLAPKI 171
Query: 768 ----------LSQK---TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
L ++ T+L F L+ AD V+++G+I SG +L+AD
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 41/251 (16%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP 665
+ ++ L G ++ + G G+GKS+LL + GE+ SG + G + Y+
Sbjct: 19 LENVSLTLNP------GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLS 72
Query: 666 QSSWIQTG-TIRENILFG---------------KDMRQSFYEEVLEGCALNQDIEMW-AD 708
Q + T+ + ++ G + E + E AL ++++ W +
Sbjct: 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132
Query: 709 GDLSVVGER-GI--------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759
G +LSGG ++R+ LARA+ D+ + D+P + +D + L
Sbjct: 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL 192
Query: 760 FKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDLIADQNSELVR 816
L TV+ +H FLD A +L + GK+ G Y + +Q +E +R
Sbjct: 193 EDY----LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL-EQKAERLR 247
Query: 817 QMKAHRKSLDQ 827
Q A + +
Sbjct: 248 QEAAAYEKQQK 258
|
Length = 530 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPS-GGRILIDG--VDISMIGLQDLRSRLSIIPQD--- 1303
+GV G G+G++ L+QALF G + I+G VDI Q +R+ ++++P+D
Sbjct: 289 LGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPEDRKR 347
Query: 1304 ----PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL------DAPVAED 1353
P+L G T L L+ + L I QRL P+
Sbjct: 348 HGIVPILGVGKNIT-LSVLKSFC--FKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-- 402
Query: 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVA 1412
S G +Q LA++LL R+L+LDE T +D I + I + +I V+
Sbjct: 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460
Query: 1413 HRIPTVID-NDLVLVLDEGKV 1432
+ V+ +D VLV+ EGK+
Sbjct: 461 SELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 1e-08
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 1251 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ-DPMLFQG 1309
G++G G+GKST+ + L ++ P G+I + G + + R + ++PQ D + +
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLDPEF 92
Query: 1310 TVRTNLDPLEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366
TVR NL ++ S +EI VI L E R + + D VA S G ++ +
Sbjct: 93 TVRENLLVFGRYFGMSTREIEAVIPS--LLEFARLESKA-DVRVAL----LSGGMKRRLT 145
Query: 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN--DLV 1424
LAR L+ ++L+LDE T +D ++I + +R +R I + + D +
Sbjct: 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 205
Query: 1425 LVLDEGKVLEYDSPRQLLED 1444
VL+ G+ + P L+++
Sbjct: 206 CVLESGRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 630 GSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKA-----YVPQSSWIQTG-TIRE 677
G G+GK++ L +LG P + G + + A VPQ + T+RE
Sbjct: 40 GPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99
Query: 678 NIL-FGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
N+L FG+ + + ++ +E AD VGE LSGG K+R+ LARA
Sbjct: 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---VGE----LSGGMKRRLTLARA 152
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAA----DLV 789
+ ++ DV + D+P + +D HL + L LL++ KT+L TTH F++ A D +
Sbjct: 153 LVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTH---FMEEAERLCDRL 208
Query: 790 LVMKDGKIEQSGKYEDLIADQ 810
V+++G+ G LI +
Sbjct: 209 CVIEEGRKIAEGAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-------TV 773
LSGGQ+QR+ + RA+ V++FD+P S +DA L Q M L Q+ T
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA----KLRVQ--MRLEIQRLHRRLKTTS 188
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
LY TH Q+E + AD V+VM G EQ G
Sbjct: 189 LYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 1215 PSSGKIELENLLVQYNPTLPM------VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL 1267
P+ IE+ +L + T+ +LKG+ GE + +VG +GSGKSTL+ L
Sbjct: 2 PAENIIEVHHL----SKTVGQGEGELSILKGVELVVKRGET-VAIVGPSGSGKSTLLAVL 56
Query: 1268 FRVVEPSGGRILIDGVDISMI---GLQDLRSR-LSIIPQDPMLFQG-TVRTNLD-PLEQH 1321
+ +PS G + + G + + LR+R + + Q L T N+ PLE
Sbjct: 57 AGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116
Query: 1322 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381
+ L E V +RL P G G++Q V LAR + +L D
Sbjct: 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSG-----GEQQRVALARAFAGRPDVLFAD 171
Query: 1382 EATASIDTAT 1391
E T ++D AT
Sbjct: 172 EPTGNLDRAT 181
|
Length = 228 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 40/223 (17%)
Query: 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-- 1272
P E+E + V Y L +V + P +K I +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1273 PSG---GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTV-------------RTN 1314
P GR+L +I S I LR ++ ++ Q P F ++ + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1315 LDPLEQHSDQE--IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372
LD L + S + IWE + +D+ + E G S GQ+Q +C+AR +
Sbjct: 134 LDELVEDSLRRAAIWEEV----------KDK------LKEKGTALSGGQQQRLCIARAIA 177
Query: 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1415
K +L++DE +++D + +++ E + T+I V H +
Sbjct: 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 30/246 (12%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---- 1275
I++++L YN + ++GI+ K ++G +G GKST I+ L R+ E G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1276 -GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1332
G + G +I I + LR ++ ++ Q P F ++ N+ I + +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGEN--------WSVGQRQLVCLARVLLKKKRILVLDEAT 1384
L EIV + L A + ++ ++ S GQ+Q +C+AR L K ++L++DE
Sbjct: 121 ADLDEIV--ESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 1385 ASIDTATDNVIQQTIREETSRCTVITVAHRIPT---VIDNDLVLVLDE---GKVLEYDSP 1438
+++D +++ I S T+ V H + V D DE G+++E+
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 1439 RQLLED 1444
Q+ +
Sbjct: 239 TQIFSN 244
|
Length = 259 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 51/228 (22%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1292
VL ++ + + + ++GR+G GKSTL + L + PS G + G ++ + +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1293 LRSRLSIIPQDPMLF---QGTVR----------TNLDPLEQ-HSDQEIWEVINKCHLAEI 1338
R + ++ QD + + TVR +LD E+ E +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE---------MLRA 137
Query: 1339 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD-NVIQQ 1397
V D +LD + S GQ Q VCLAR L + ++L+LDEA +++D VI+
Sbjct: 138 VDLDDSVLDKRPPQ----LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 1398 --TIREET-SRCTVIT--------VAHRIPTVIDNDLVLVLDEGKVLE 1434
++++ + C IT R V+V+D G+++E
Sbjct: 194 LKKLQQQFGTACLFITHDLRLVERFCQR---------VMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ + G +A+ G G GKS+LL + I SG + G+ +Y
Sbjct: 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYC 82
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
Q+ + T+ +N++F +R + A + +A D S++ + LSGG
Sbjct: 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRA----AALDLLARFALPD-SILTKNITELSGG 137
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH-QLE 781
+KQRI L R + + + D+ SA+D ++ + + ++ VL+ TH + +
Sbjct: 138 EKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRYVREQNVAVLWITHDKDQ 196
Query: 782 FLDAADLVLVMKDGKI 797
+ AD V+ ++ G
Sbjct: 197 AIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281
+ +L + Y L+ ++ T + + V+G +G GK+TL+ + V PS G I ++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 1282 GVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1340
G I G + ++ Q+ L V N+ Q I K EI
Sbjct: 66 GRRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRG------IEKAQRREIAH 114
Query: 1341 QDQRLLDAPVAEDGENW--SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398
Q L+ AE W S G RQ V +AR L + ++L+LDE ++D T +Q+
Sbjct: 115 QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 1399 I 1399
+
Sbjct: 175 L 175
|
Length = 259 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-08
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 40/183 (21%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG--- 682
V + G VG+G++ L ++ G P SG I + GK + + R+ I G
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGE-ITLDGKP--------VTRRSPRDAIRAGIAY 79
Query: 683 --KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740
+D R+ EG L+ + ++++ LSGG +Q++ LAR + +
Sbjct: 80 VPED-RKR------EGLVLDLSVAE----NIAL----SSLLSGGNQQKVVLARWLARDPR 124
Query: 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQL-EFLDAADLVLVMKD 794
V I D+P VD K + L+ + K VL + +L E L D +LVM +
Sbjct: 125 VLILDEPTRGVDVGA-----KAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179
Query: 795 GKI 797
G+I
Sbjct: 180 GRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 25/201 (12%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSRLSIIP 1301
PGE + G +G+GKSTL++ + + PS G+I G DI+ + ++ LR ++ +I
Sbjct: 27 PGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIF 85
Query: 1302 QD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWS 1358
QD +L TV N+ PL +I +I R+ LD + + +N+
Sbjct: 86 QDHHLLMDRTVYDNVAIPL----------IIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 1359 V----GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVA 1412
+ G++Q V +AR ++ K +L+ DE T ++D A I + + EE +R TV+
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMAT 194
Query: 1413 HRIPTVID-NDLVLVLDEGKV 1432
H I + + +L L +G +
Sbjct: 195 HDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-08
Identities = 99/532 (18%), Positives = 177/532 (33%), Gaps = 70/532 (13%)
Query: 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCST 992
F L + F +G + A + L + + + API D + ++ +
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 993 DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCH 1052
D + + +A AL I ++ + +F + + + ++ TA
Sbjct: 119 DIDQI-NAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI-------IIGTA--- 167
Query: 1053 YLLQAYYITTARELARMVGTRKAPIL-----HHFSESIAGATTIRCFNQENRFLLRSHSL 1107
A + A H GA ++ +H
Sbjct: 168 ----AQLLAFMGG---FKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSF--AHGA 218
Query: 1108 IDDYSC-VTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPR--SAIDPSLAGLAATYG 1164
I + + + + + N FFL++ + ++ID AA
Sbjct: 219 IQESANNIADLHIIEILIFIAAENF-GQLLFFLLIGCALFAAAMFASIDA-----AAISA 272
Query: 1165 LNLNVLQ-----AWVIWNLCNVENKMISVERILQFT---NIPSEAPLVIKNSRPSPEWP- 1215
L +L ++ L + I+ +R+ F N P +
Sbjct: 273 FVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHD 332
Query: 1216 -SSGKIELENLLVQYNP-----TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1269
S IEL++ V NP + L I + +VG G GKSTL +
Sbjct: 333 KSVDSIELKD--VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390
Query: 1270 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1329
+ P G IL+DG +S D R S I D LF + D E S +
Sbjct: 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DEGEHASLDNAQQY 448
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDG-----ENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
+ + +A+ V+ EDG S GQ++ + L L+ + IL+ DE
Sbjct: 449 LQRLEIADKVK----------IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA 498
Query: 1385 ASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
A D A + + + R T+I ++H D ++ L G +++
Sbjct: 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 1208 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1267
+ P+W +EL N+ Y + I T + + ++G GSGKSTL L
Sbjct: 314 PQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369
Query: 1268 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1327
+ +P G IL+DG ++ +D R S + D LF L P + ++ +
Sbjct: 370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL----LGPEGKPANPALV 425
Query: 1328 EV-INKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
E + + +A + +D R+ + S GQ++ + L L +++ IL+LDE A
Sbjct: 426 EKWLERLKMAHKLELEDGRISNL-------KLSKGQKKRLALLLALAEERDILLLDEWAA 478
Query: 1386 SID 1388
D
Sbjct: 479 DQD 481
|
Length = 547 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 1251 GVVGRTGSGKSTLIQALFRV--VEPSG---GRILIDGVDISMIGLQD--LRSRLSIIPQD 1303
++G +G GK+T ++A+ R+ + P GRIL+DG DI + +R R+ ++ Q
Sbjct: 34 ALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93
Query: 1304 PMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQR---LLDA---PVAEDGEN 1356
P F +V N+ + ++ + ++ HL E+ + R L D +
Sbjct: 94 PNPFPTMSVFDNV-----VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATG 148
Query: 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1415
S GQ+Q +C+AR L + IL++DE T+++D A+ I+ + + T+I V H +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M+I K A G G GKS+LL L + RI G I++ G+ Y + +
Sbjct: 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIYDKK---VDV 101
Query: 673 GTIRENI--LFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSV--------------- 713
+R + +F + +S YE V+ G L Q I D +V
Sbjct: 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRL-QGINNRRVLDEAVERSLRGAALWDEVKD 160
Query: 714 -VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
+ E LSGGQ+QR+ +ARA+ +V + D+P SA+D + L + L+ L K
Sbjct: 161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST--LKIEELITELKSKY 218
Query: 772 TVLYTTHQLE 781
T++ TH ++
Sbjct: 219 TIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ I KG A+ G GSGKS+L +I+G ++ I G
Sbjct: 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------------- 63
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQ----DIEMWADGDLSVVGERGIN--LSGGQKQRIQ 730
E+I D+ E G L +I + D R +N SGG+K+R +
Sbjct: 64 EDIT---DL--PPEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNE 114
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQLEFLDA--AD 787
+ + + D+ I D+P S +D L + + L + VL TH LD D
Sbjct: 115 ILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPD 173
Query: 788 LVLVMKDGKIEQSG 801
V V+ DG+I +SG
Sbjct: 174 RVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
+KI + A+ G G GKS+LL + L E R+ G +++ G+ Y P I+
Sbjct: 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDPIE- 82
Query: 673 GTIRENILFGKDMRQSF-----YEEVLEGCALNQ---------DIEMWA-------DGDL 711
+R + F Y+ V G LN + WA D
Sbjct: 83 --VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK 140
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + NLSGGQ+QR+ +ARA+ + + D+P + +D GT ++ L L +
Sbjct: 141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFELKKEY 199
Query: 772 TVLYTTHQ-LEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + +D V + GK+ + G + + EL +
Sbjct: 200 TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEK 246
|
Length = 253 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 3e-08
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH----LFKQC--LMGLLSQKTV 773
LSGGQKQR+ +ARA+ SN V + D+ SA+D T T L K +GL T+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-TRSILELLKDINRELGL----TI 194
Query: 774 LYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ TH+++ + D V V+ G++ + G ++ + L R+
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
|
Length = 343 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN- 678
I GS VA+ G GSGKS+LL + G + SG + + G++ + +R+
Sbjct: 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT-VTI-GERVITAGKKNKKLKPLRKKV 87
Query: 679 -ILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVG------ERG-INLS 722
I+F Q F E V + +N +D + A + +VG R LS
Sbjct: 88 GIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL 780
GGQ +R+ +A + +V + D+P + +D G + L +K T + TH +
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLHKEKGLTTVLVTHSM 206
Query: 781 EFLDAA---DLVLVMKDGKIEQSGKYEDLIAD 809
E DAA D ++VM G + G ++ AD
Sbjct: 207 E--DAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---------RISGAAIKVHGKKAYVPQSS 668
+ I G VA+ G GSGKS+LL + G I + G ++ G+ A + S
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 669 WIQTG------------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG- 715
TG ++ EN+L G F+ Q A L+ VG
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR--ALQALTRVGM 142
Query: 716 -----ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+R LSGGQ+QR+ +ARA+ + V + D+P +++D + + +M L
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA-----RIVMDTLRD 197
Query: 771 ------KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
TV+ T HQ+++ L + ++ ++ G + G + ++ L R +
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSI 252
|
Length = 262 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 47/205 (22%), Positives = 76/205 (37%), Gaps = 41/205 (20%)
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
A N + + I V V G GSGKS+L++ L SG A +
Sbjct: 5 GANVHNLQN------LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFL 54
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
+ I + L Q + L L Q +
Sbjct: 55 PKFSRNK------LIFIDQL------QFLIDVGLGYLTLGQKLS---------------T 87
Query: 721 LSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTT 777
LSGG+ QR++LA ++S ++I D+P + + L + + GL+ TV+
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIE 146
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H L+ L +AD ++ G + GK
Sbjct: 147 HNLDVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA-----------AIKVHGKKAYVPQS 667
+ KG V G G+GKS+ + I G +P SG+ +V Y+P+
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEH 83
Query: 668 SWIQTGT-IRENILFGKDMRQSFYEEVLEGCALNQDI-EMWADGDLSVVGERGIN-LSGG 724
+ + +RE + F + ++G L Q + EM L + I LS G
Sbjct: 84 NPLYLDMYVREYLQFIAGIYG------MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKG 137
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784
+QR+ LA+A+ + V I D+P + +D + + + + + KT++ +TH ++ ++
Sbjct: 138 YRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQEVE 196
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIA 808
A D V+++ GKI K ++L A
Sbjct: 197 AICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 39/205 (19%)
Query: 1237 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1283
GI TFPG K + ++G G+GKSTL++ L +P G ILIDG
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 1284 DISMIGLQD-LRSRLSIIPQD----PMLFQGTVRTNLDPLEQ--HSDQEIWEVINKCHLA 1336
++ L + ++II Q+ P + TV NL L Q H ++N+ L
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEM---TVAENL-YLGQLPHK----GGIVNRRLLN 118
Query: 1337 EIVR-QDQRL-----LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
R Q + L D P+ S+GQRQ+V +A+ L + R++ DE T+S+
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174
Query: 1391 TDNVIQQTIREETSRCTVIT-VAHR 1414
+ + IRE + VI V+HR
Sbjct: 175 EIEQLFRVIRELRAEGRVILYVSHR 199
|
Length = 501 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG---AAIKVHGKKAYVPQSS--WI------- 670
G + V G G GK++LL + G + SG ++ P + ++
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN------LSGG 724
+ EN+ F+ A++ + + L+ VG G LS G
Sbjct: 86 PELSALENL--------HFW------AAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAG 131
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQ 779
Q++R+ LAR S + ++I D+P +A+D G L L L++ VL TTHQ
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 32/199 (16%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI--LGE-IPRIS-GAAIKVHGKKAY 663
KK + + + A+ G GSGKS+LL SI + + P ++ +I +G Y
Sbjct: 17 KKKALN-SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 664 VPQSSWIQTGTIRENILFGKDMRQ------SFYEEVLEGCALN--QDIEMWADG-DLSVV 714
P++ + +R+ I G +Q S YE V+ G L +D ++ + + S+
Sbjct: 76 SPRTDTVD---LRKEI--GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK 130
Query: 715 G------------ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
G + + LSGGQ+QR+ +AR + ++ + + D+P SA+D + + ++
Sbjct: 131 GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EE 189
Query: 763 CLMGLLSQKTVLYTTHQLE 781
L+GL T+L T ++
Sbjct: 190 TLLGLKDDYTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 36/196 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPR----ISGAAIKVHGKKAYVPQSSWIQTGT 674
I G VAV G G GKS+LL + G E P ++G A P +
Sbjct: 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA----------PLAE------ 78
Query: 675 IRENI-LFGKDMRQSFYEEVLE--GCALNQDIEMWADGDLSVVG--ERGIN----LSGGQ 725
RE+ L +D R +++V++ G L A L+ VG +R LSGGQ
Sbjct: 79 AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQ 138
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQL-E 781
KQR+ LARA+ + + D+P A+DA T + Q L+ L Q+ TVL TH + E
Sbjct: 139 KQRVALARALIHRPGLLLLDEPLGALDALTRIEM--QDLIESLWQQHGFTVLLVTHDVSE 196
Query: 782 FLDAADLVLVMKDGKI 797
+ AD VL++++GKI
Sbjct: 197 AVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 4e-08
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 25/222 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+++ KGS A+ G GSGKS+LL + G + G + V G S + +R+
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTV-GDIVVSSTSKQKEIKPVRK 84
Query: 678 N--ILFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG-------ERGIN 720
++F Q F E VL+ A + E A L +VG +
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ +R+ +A + +V + D+P + +D + + S +TV+ TH +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 781 -EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
+ D AD V +++ G I G D+ + V +KAH
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQE-----VDFLKAH 241
|
Length = 288 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-------- 669
+KI +A G G GKS+LL I GA KV G+ Y ++ +
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA--KVEGRLLYRDRNIYDSQINSVK 98
Query: 670 --IQTG-----------TIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
Q G +I ENI F K E+ L A+ ++++
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK------ 152
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ E+G LSGGQ+QR+ +ARA+ DV + D+P SA+D + + + CL L Q
Sbjct: 153 -DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE-LKEQ 210
Query: 771 KTVLYTTHQLE 781
T++ TH ++
Sbjct: 211 YTIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 54/212 (25%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGRILIDGVDISMIGLQD 1292
+LKG+ T GE ++G GSGKSTL + + E + G IL G DI+ + ++
Sbjct: 15 ILKGVNLTIKKGEVHA-LMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 1293 LRSRLSII--PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1350
R+RL I Q P G N D L R ++
Sbjct: 74 -RARLGIFLAFQYPPEIPGV--KNADFL-------------------------RYVN--- 102
Query: 1351 AEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD--------NVIQQTIREE 1402
E +S G+++ + ++LL + + +LDE D+ D VI + +REE
Sbjct: 103 ----EGFSGGEKKRNEILQLLLLEPDLAILDE----PDSGLDIDALRLVAEVINK-LREE 153
Query: 1403 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
+IT R+ I D V VL +G++++
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
LKGI+ T + +G +G G+GK+T ++ L +++P+ G + + G+ + +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLR 94
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHS-DQEIWEV------INKCHLAEIVRQDQRLLDA 1348
R+ ++ + + +L ++ I+++ L+E++ + LLD
Sbjct: 95 RIGVV----FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL-DLEELLDT 149
Query: 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RC 1406
PV S+GQR +A LL + IL LDE T +D I+ ++E
Sbjct: 150 PV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205
Query: 1407 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437
TV+ +H + + VLV+D+G++L YD
Sbjct: 206 TVLLTSHYMKDIEALARRVLVIDKGRLL-YDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQDL 1293
L G++ T K + VVG +G GKSTL + L + P+GG + G D+ + L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1294 RSRLSIIPQDPMLFQG------TVRTNL-DPLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1346
R ++ I+ Q+P G V L +PL ++ ++ E +
Sbjct: 91 RQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTS------LSAAERREKALA----M 137
Query: 1347 DAPVAEDGENW-------SVGQRQLVCLARVLLKKKRILVLDEATASID 1388
A V E++ S GQRQ + +AR L+ ++V DE +++D
Sbjct: 138 MAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYV 664
+ +G + G VGSG++ L++ + G R G I+++GK AY+
Sbjct: 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE-IRLNGKDISPRSPLDAVKKGMAYI 343
Query: 665 PQSSWIQTG-----TIRENI----------------LFGKDMRQSFYEEVLE----GCA- 698
+S G +I +N+ LF + Q E E C
Sbjct: 344 TESRR-DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS 402
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
+NQ+I LSGG +Q++ +++ + +V IFD+P +D
Sbjct: 403 VNQNIT---------------ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447
Query: 759 LFKQCLMGLLSQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQ 799
++K +M L+ K +L + +L E + D + V +G++ Q
Sbjct: 448 IYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 48/218 (22%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG- 1275
+ ENL V Y L +K + P + +G +G GKST+++ R+ + P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1276 --GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN-------------LDPL 1318
G++ G ++ + ++R R+ ++ Q P F ++ N +D L
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1319 EQHSDQE--IW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
+ S ++ +W EV +K + + G + S GQ+Q +C+AR + +
Sbjct: 128 VERSLRQAALWDEVKDK-----------------LKQSGLSLSGGQQQRLCIARAIAVQP 170
Query: 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
++++DE +++D + I++ + E + T+I V H
Sbjct: 171 EVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 45/222 (20%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIPR-----ISGAAIKVHGKK------AYVPQ 666
I KG ++ G GSGKS++ ++G E + + AI + V Q
Sbjct: 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQ 90
Query: 667 SSWIQ--TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ Q ++ ++ FG +M E L+ ++M D
Sbjct: 91 NPDNQFVGSIVKYDVAFGLENHAVPYDEM-HRRVSEALK------QVDMLERAD-----Y 138
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----- 771
LSGGQKQR+ +A + N V I D+ S +D +Q L+ L+ +
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA-----RQNLLDLVRKVKSEHN 193
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
T++ TH L AD V+VM G + + G ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 38/246 (15%)
Query: 1235 MVLKGITCTF-------------PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281
+VLK IT F + ++G +G GK+T+++ + + +P+ G+I ID
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 1282 GVDISMIGLQDLRSRLSIIPQDPMLFQ-----GTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
G D++ +Q + + ++ Q LF V L L + K
Sbjct: 67 GEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLG----------VPKEERK 114
Query: 1337 EIVRQDQRLLDAPVAEDG--ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
+ V++ L+D ED + S GQ+Q V LAR L+ K ++L+ DE +++D
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 1395 IQQTIREETSR--CTVITVAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
+++ IRE + T + V H + +D V+V+++GK+++ SP++L +S F
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF-- 232
Query: 1452 LVAEFL 1457
+A F+
Sbjct: 233 -MASFM 237
|
Length = 351 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 50/223 (22%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-------- 1270
+E+ NL + Y L I+ P + +G +G GKSTL++ R+
Sbjct: 25 ALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1271 VEPSGGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1328
+E G I +DG +I + +LR R+ M+FQ R N P + I+E
Sbjct: 83 IE---GEIRLDGQNIYDKKVDVAELRRRVG------MVFQ---RPNPFP------KSIYE 124
Query: 1329 -VINKCHLAEIVRQDQRLLDAPVA-----------------EDGENWSVGQRQLVCLARV 1370
V+ L I ++R+LD V E+ S GQ+Q + +AR
Sbjct: 125 NVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182
Query: 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
+ + +L+LDE T+++D + I++ I E S+ T++ V H
Sbjct: 183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 7e-08
Identities = 45/158 (28%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGIN 720
V Q + +I ENI FGK+ + E+V C A+++ IE + + VG G +
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQKQRI +ARA+ + + D+ S++D+++ L ++ ++ + + KT++ H
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAH 1417
Query: 779 QLEFLDAADLVLVM----KDGKIEQS-GKYEDLIADQN 811
++ + +D ++V + G Q+ G +E+L++ Q+
Sbjct: 1418 RIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455
|
Length = 1466 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG-------THLFKQCLMGLLSQKTV 773
LSGGQ+QR+ + R + + V++ D+P S +DA + L K+ +T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL------GRTM 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGK 802
+Y TH Q+E + AD ++V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTH 778
LSGGQKQR+ +A AV + I D+ S +D L + + G+ Q TV+ TH
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITH 199
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
L+ + +D VLVMK+G++E + +L + + ++L+
Sbjct: 200 DLDEVALSDRVLVMKNGQVESTSTPRELFS-RGNDLL 235
|
Length = 279 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 47/214 (21%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHGKK----AYV 664
+ + G V + G G+GK++ ++G +PR +G I +H + Y+
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 665 PQSSWI-QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER-GINLS 722
PQ + I + ++ +N++ +R E E ++ E+ + + + + G +LS
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDSMGQSLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-E 781
GG+++R+++ARA+ +N + D+PF+ VD + + + S VL T H + E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
L + ++ G + G +++ D++ + V
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRV 233
|
Length = 241 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 41/237 (17%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------AYVPQS-SWIQTGTIRENI 679
G G+GK++ ILG + G I +G Y+P+ T+ + +
Sbjct: 35 GPNGAGKTTTFRMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL 93
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI---NLSGGQKQRIQLARAVY 736
+ +++ E+ + ++ W + L +VG++ LS G +Q+IQ AV
Sbjct: 94 KYLAELKGMPKAEI------QKKLQAWLE-RLEIVGKKTKKIKELSKGNQQKIQFISAVI 146
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKD 794
++ I D+PFS +D L K + L + T+++++H++E ++ D +L++K
Sbjct: 147 HEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 795 GKIEQSGKYEDLIAD-----------------QNSELVRQMKAHRKSLDQVNPPQED 834
G+ G ED+ N + ++ + ++ E
Sbjct: 206 GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWRIQIENET 262
|
Length = 300 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-08
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 12/94 (12%)
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTV--- 773
+LSGG+KQR+ + RA+ + ++ + D+P +++D K+ L+ L + + +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR-----KRELLPYLERLAREINIP 181
Query: 774 -LYTTHQL-EFLDAADLVLVMKDGKIEQSGKYED 805
LY +H L E L AD V+V++ GK++ G E+
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 674 TIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+I EN+ +G +R +S EE +E N +W + +G+ NLSGGQ+QR+
Sbjct: 114 SIFENVAYGLRIRGVKRRSILEERVENALRNA--ALWDEVK-DRLGDLAFNLSGGQQQRL 170
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
+ARA+ ++ ++ +FD+P SA+D T ++ + L ++ T+L TH ++
Sbjct: 171 CIARALATDPEILLFDEPTSALDP-IATASIEELISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 43/231 (18%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ----DPM 1305
IG++G G GK+T ++ L V++P G +DL ++S PQ D
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEG------------SEEDL--KVSYKPQYISPD-- 413
Query: 1306 LFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362
+ GTV L S E++ +L + LL+ PV + S G+
Sbjct: 414 -YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-------EDLLERPV----DELSGGEL 461
Query: 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID 1420
Q V +A L ++ + +LDE +A +D ++ + IR E + T + V H I +ID
Sbjct: 462 QRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMID 520
Query: 1421 --NDLVLVLD--EGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNR 1467
+D ++V + GK P + E + L F RR ++ R R
Sbjct: 521 YVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTF-RRDPETGRPR 570
|
Length = 591 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 61/244 (25%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----KVHGKKAYVPQSSWI--- 670
M I + S A+ G G GKS+ L + RI A I ++ G+ Y + +
Sbjct: 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125
Query: 671 -QTG-----------TIRENILFG--------------------KDMRQSFYEEVLEGCA 698
+ G +IRENI +G KD E L A
Sbjct: 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
L ++ + + + LSGGQ+QR+ +AR + + +V + D+P SA+D T
Sbjct: 186 LWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 759 LFKQCLMGLLSQKTVLYTTHQLE-----------FLDAADLVLVMKDGKI---EQSGKYE 804
+ + L + TV+ TH ++ FL +LV KI +S + E
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVE 297
Query: 805 DLIA 808
D I
Sbjct: 298 DYIT 301
|
Length = 305 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL------------SSILGEIPRISGAAIKVHGKKAY-- 663
+ I K A+ G G GKS+LL I G+I +G I G
Sbjct: 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIMDSGADVVAL 85
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q +I EN+ +G K+ + + E+ L+G AL +++
Sbjct: 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK----- 140
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+ + ++LSGGQ+QR+ +AR + N +V + D+P SA+D T + + L
Sbjct: 141 --DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDLKK 197
Query: 770 QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
+ TV+ TH + + +D M GK+ + K + + + EL
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEEL 243
|
Length = 253 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 42/180 (23%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTGTIR 676
+I G ++ + G G+GKSSL ++ G P SG ++PQ ++ GT+R
Sbjct: 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLR 81
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
E +++ W D LSGG++QR+ AR +
Sbjct: 82 EQLIYP-----------------------WDD-----------VLSGGEQQRLAFARLLL 107
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVMKD 794
D+ SA+D + + L LL + TV+ H+ D VL +
Sbjct: 108 HKPKFVFLDEATSALDEES-----EDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHGKKAYVPQ 666
++ +G + G G+GK++ + + + SG A +V + V Q
Sbjct: 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
Query: 667 SSWIQTG-TIRENI-LFGK------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ T EN+ + + R+ +E+L+ + + D V
Sbjct: 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLEAADRLVK---- 130
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC-LMGLLSQKTVLYTT 777
SGG ++R+++AR++ +V D+P +D T H+++ + T+L TT
Sbjct: 131 -TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806
H +E + D V ++ G+I G E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 28/234 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
+ I K A G G GKS++L L R+ G + HGK Y P ++
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVDPVEV 89
Query: 673 ---------------GTIRENILFGKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVG 715
+I +NI +G + + +E++E +L Q +W D +
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-SLRQAA-LW-DEVKDKLK 146
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
+ G++LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ + L Q T++
Sbjct: 147 QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELMHELKEQYTIII 205
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV 828
TH ++ +D+ E G+Y L+ +E + + + D V
Sbjct: 206 VTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259
|
Length = 264 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 36/223 (16%)
Query: 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR----- 1269
P+ K E+ L Y LK I ++ ++G +G GKST ++ R
Sbjct: 12 PTQQKSEVNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 1270 ---------VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN------ 1314
++ P IL VD ++R R+S++ Q P F ++ N
Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPI-----EVRMRISMVFQKPNPFPKSIFENVAYGLR 124
Query: 1315 LDPLEQHS--DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372
+ +++ S ++ + + L + V+ RL D N S GQ+Q +C+AR L
Sbjct: 125 IRGVKRRSILEERVENALRNAALWDEVKD--RLGDLAF-----NLSGGQQQRLCIARALA 177
Query: 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1415
IL+ DE T+++D I++ I + ++ T++ V H +
Sbjct: 178 TDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-07
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLY 775
LSGGQ+QR+ +ARA+ + V + D+P A+D+H+G +M +L Q TV+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE-----VMAILHQLRDRGHTVII 199
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
TH + A+ V+ ++DG+I + + ++ + + +
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEI---------VRNPPAQEKVNVAGGTEPV 240
|
Length = 648 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 35/233 (15%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSS---LLSSILGEIP------RISGAAIKVH 658
KKP + I +GS A+ G GSGKS+ L++ +L +P +I+ I +
Sbjct: 19 KKPALNDIS-FSIPRGSWTALIGHNGSGKSTISKLINGLL--LPDDNPNSKITVDGITLT 75
Query: 659 GKKAY--------VPQSSWIQ--TGTIRENILFGKDMRQSFYEEVLEGCA-LNQDIEMWA 707
K + V Q+ Q T+ +++ FG + R E+++ + D+ M
Sbjct: 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM-- 133
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
L + NLSGGQKQR+ +A + + I D+ S +D + K L+
Sbjct: 134 ---LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK--LIRK 188
Query: 768 LSQK---TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L +K TV+ TH ++ + AD VLV+ DGK+ G ++ E++++
Sbjct: 189 LKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF--SKVEMLKE 239
|
Length = 282 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKST---LIQALFRVVEPSGGRILIDGVDISMIG-- 1289
VL I PGE I + G +GSGK+T LI L V E G + + G ++
Sbjct: 20 VLFDINLEINPGEIVI-LTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEK 75
Query: 1290 -LQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCH-LAEIVRQDQRL 1345
L LR + I Q L T R N+ LE + E + + E V L
Sbjct: 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL 135
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIRE 1401
P N S GQ+Q V +AR L+ + ++++ DE TA++D+ + ++Q+ RE
Sbjct: 136 DYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1402 ETSRCTVITVAH--RIPTVIDNDLVLVLDEGKVL 1433
+ CT++ V H RI V D ++ +++GK+L
Sbjct: 191 QG--CTILIVTHDNRILDVADR--IVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHG--------KKAYVPQSSWI 670
GS + G GSGKS+LL + G + +G A + +HG + A V Q S
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS-- 84
Query: 671 QTG---TIRENILFGKDMRQSFY-------EEVLEGCALNQDIEMWADGDLSVVGERGIN 720
T T+R+ + G+ +S + V++ ++ AD D+S
Sbjct: 85 DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-------T 137
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--AHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG++QR+ +ARA+ + + D+P + +D A T + L + TV+ H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALH 195
Query: 779 QLEF-LDAADLVLVMKDGKIEQSG 801
L D V+V+ G++ +G
Sbjct: 196 DLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI--IPQDPM-- 1305
+G+ G G+G+S L++A+ + +P+ GRIL++G D+ R RL + +P+D
Sbjct: 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 1306 --LFQGTVRTNLDPLEQHSDQEI-------WEVINKCHLAEIVRQ-DQRL--LDAPVAED 1353
+ ++ NL L +H + I K E++ + D R DAP
Sbjct: 347 GLVLDLSLAENL-VLGRHDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPAR-- 402
Query: 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE 1402
+ S G +Q + LAR L ++ +L+ + T +D I + + E
Sbjct: 403 --SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449
|
Length = 501 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSRLSII 1300
+ GE +GVVG +G GKST +A+ +V+ + G + G D+ + + +RS + +I
Sbjct: 45 YEGET-LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 1301 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVIN---KCHLAEIVRQDQR-----------LL 1346
QDP+ +L+P I E+I + + ++ RQ+ + LL
Sbjct: 104 FQDPL-------ASLNP-----RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL 151
Query: 1347 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIREE 1402
+ +S GQ Q + +AR L+ + ++++ DE +++D + N++QQ RE
Sbjct: 152 PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE- 210
Query: 1403 TSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
++I +AH + V +D VLV+ G +E + ++ + ++K
Sbjct: 211 -MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIP-- 1301
PGE ++ ++G G+GK+TL+ + P G +L DG D + L + R +R I
Sbjct: 30 PGELRV-LIGPNGAGKTTLMDVITGKTRPQEGEVLFDG-DTDLTKLPEHRIARAGIGRKF 87
Query: 1302 QDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL---------DAPVA 1351
Q P +F+ TVR NL+ L + D+ ++ + AE R+ LL D A
Sbjct: 88 QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA 146
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITV 1411
S GQ+Q + + +L + ++L+LDE A + A + ++ + +++ V
Sbjct: 147 ----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVV 202
Query: 1412 AHRIPTVID-NDLVLVLDEGKVL 1433
H + V + D V VL EG VL
Sbjct: 203 EHDMGFVREIADKVTVLHEGSVL 225
|
Length = 249 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLRSR-LSIIPQDP 1304
+ +VG +GSGKS A+ ++ P + G IL+DG + + +R R ++ I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNP 71
Query: 1305 MLFQGTVRT-------NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1357
+ T L L + S Q +I + A + + +L +
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKLSKQAR-ALILEALEAVGLPDPEEVLKKYPFQ----L 126
Query: 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRI 1415
S G Q V +A LL + L+ DE T +D + + +RE ++ + H +
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 1416 PTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
V D V V+D+G+++E + +++ + ++
Sbjct: 187 GVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 35/262 (13%)
Query: 593 IEAGEYAWDAREENFKKPTIKLTDK-------MKIMKGSKVAVCGSVGSGKSSLLSSILG 645
+EAG+ A D N + + + DK +KI S + G GSGKS+LL +L
Sbjct: 1 MEAGKSAEDVF--NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLN 57
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ-------SFYEEVL---- 694
+ I + IKV GK Y + + Q I+ G +Q S Y+ +
Sbjct: 58 RLIEIYDSKIKVDGKVLYFGKDIF-QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116
Query: 695 -EGCALNQDIEMWADGDLSVVG----------ERGINLSGGQKQRIQLARAVYSNSDVYI 743
G ++I+ + L VG LSGGQ+QR+ +ARA+ V +
Sbjct: 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL 176
Query: 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ-LEFLDAADLVLVMKDGKIEQSGK 802
D+P S +D + ++ + L ++ ++ +H + AD V + +G++ + G
Sbjct: 177 MDEPTSMIDI-VNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
Query: 803 YEDLIADQNSELVRQMKAHRKS 824
++ +EL + R S
Sbjct: 236 SNEIFTSPKNELTEKYVIGRIS 257
|
Length = 257 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKAYVPQSSWIQTG 673
+ G + G G+GK++ L + G + +G A V + A + +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 674 --------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLSG 723
T REN+ + + L+G L +E AD G ++ R S
Sbjct: 86 STGLYDRLTARENLEYFAGLYG------LKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEF 782
G +Q++ +ARA+ + V + D+P + +D T ++ + L + K +L++TH ++
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIRQLRALGKCILFSTHIMQE 198
Query: 783 LDA-ADLVLVMKDGKIEQSG 801
++ D V+V+ G++ G
Sbjct: 199 VERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE---- 677
+ S++AV G G+GKS+L G + SG+ + + G+ I IRE
Sbjct: 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL-IRGEP--------ITKENIREVRKF 79
Query: 678 -NILFGKDMRQSFYEEVLEG-----CALNQDIEMWADGDLSVVGERGI---------NLS 722
++F Q F V + L D E A S + G+ +LS
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQ 779
GG+K+R+ +A + V + D+P + +D L + L + TV+++THQ
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPETYGMTVIFSTHQ 197
Query: 780 LEFL-DAADLVLVMKDGKIEQSGKYEDL 806
L+ + + AD + VM G+I G E++
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 65/257 (25%), Positives = 120/257 (46%), Gaps = 41/257 (15%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+ N+ + T VL I+ P + + ++G +GSGK+TL++ + + + G I
Sbjct: 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TV---------------RTNLDPLEQHSD 1323
G D+S + +D ++ + Q LF+ TV R N ++
Sbjct: 61 FHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118
Query: 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
Q + E++ HLA+ R +L S GQ+Q V LAR L + +IL+LDE
Sbjct: 119 Q-LLEMVQLAHLAD--RYPAQL------------SGGQKQRVALARALAVEPQILLLDEP 163
Query: 1384 TASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440
++D +++ +R+ E + T + V H ++ D V+V+ +G + + +P Q
Sbjct: 164 FGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223
Query: 1441 LLEDNSSSFSKLVAEFL 1457
+ + ++ F V EF+
Sbjct: 224 VWREPATRF---VLEFM 237
|
Length = 353 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 44/209 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSL---LSSIL------GEIPRISGAAIKVHGKK------- 661
+K+ G V++CG G+GKS+L LS + GEI G ++ +
Sbjct: 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDTERAGI 84
Query: 662 -------AYVPQSSWIQTGTIRENILFGKDMRQSF---YEEVLEGCALNQDIEMWADGDL 711
A V + S + ENI G ++ Y+ + ++ A L
Sbjct: 85 AIIHQELALVKELS------VLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQLKL 133
Query: 712 SV-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ NL GQ+Q +++A+A+ + + I D+P +++ L ++ L
Sbjct: 134 DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD--IIRDLKA 191
Query: 771 KTV--LYTTHQLEFLDA-ADLVLVMKDGK 796
+ +Y +H+L + A +D + V++DG+
Sbjct: 192 HGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-07
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--------ISGAAIK------------- 656
+++ G V +CG G+GKS+L+ + G P SG+ +K
Sbjct: 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81
Query: 657 -VHGKKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGD 710
+H + VP+ S + ENI G ++ R ++ L L +++++ AD
Sbjct: 82 IIHQELTLVPELS------VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
VG+ G GGQ+Q +++A+A+ + + I D+P S++ L ++ L
Sbjct: 136 TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDLKA 189
Query: 771 KTV--LYTTHQLEFLDA-ADLVLVMKDGK 796
V +Y +H+L + A D + V++DG+
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 4e-07
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 35/250 (14%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVPQSSWI-QTG 673
A G G+GK++ LS + G +P SG + V GK PQ + +
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVL-VGGKDIETNLDAVRQSLGMCPQHNILFHHL 1018
Query: 674 TIRENILFGKDMRQSFYEEV-LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
T+ E+ILF ++ +EE LE A+ +D + + E +LSGG ++++ +A
Sbjct: 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGGMQRKLSVA 1073
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLV 791
A ++ V + D+P S VD ++ ++ L+ S +T++ +TH ++ D D + +
Sbjct: 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDEADLLGDRIAI 1132
Query: 792 MKDGKIEQSGKYEDLIADQNS-------ELVRQMK---AHRKSLDQVNPPQEDKCLSRVP 841
+ G++ SG L +N LVR+MK + R + +R P
Sbjct: 1133 ISQGRLYCSGTPLFL---KNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCP 1189
Query: 842 CQMSQITEER 851
++ +IT E+
Sbjct: 1190 ARVDEITPEQ 1199
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 5e-07
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 31/203 (15%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-----------LRSRLS 1298
+G+ G G+G++ L +ALF S G IL+DG + + +D R
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347
Query: 1299 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL-------DAPVA 1351
++ + N+ L +I++ + + R L + P+
Sbjct: 348 LVLDMS------IAENIT-LASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG 400
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVIT 1410
S G +Q V LAR L ++L+LDE T ID I + IRE + ++
Sbjct: 401 ----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM 456
Query: 1411 VAHRIPTVIDN-DLVLVLDEGKV 1432
++ +P ++ D +LV+ EG++
Sbjct: 457 ISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 45/209 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI-P-----RISGAAI-KVHGKK-AYVPQS-- 667
+ I G V + G G+GKS+LL I E P R++G + + G+ Y+ +
Sbjct: 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81
Query: 668 ------SWIQTGTIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+ + EN+ F +++R+ LE L+
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV-PAALELVGLSHKHRALPAE---- 136
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQC-LMGLLS 769
LSGG++QR+ +ARA+ ++ + I D+P +D T +L K+ G
Sbjct: 137 -------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-- 187
Query: 770 QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797
TV+ TH E +D V+ ++ GK+
Sbjct: 188 --TVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 78/345 (22%), Positives = 133/345 (38%), Gaps = 68/345 (19%)
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVI--TFGVCILLKTPLTSGAVLSALATFRI 541
+E ++ + A + W++ L+ +I F + + L T+ A L
Sbjct: 219 QEYRHHIIRANTFHLLA---VNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVL-VLLF 274
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDV-AIDIEAGEYAW 600
L+ P+ + ++ + +V+ +I + E K D +++ +A+
Sbjct: 275 LRTPLLSAVGILPTLLTAQVAFNKIAKL--ELAPYKADFPRPQAFPDWKTLELRNVRFAY 332
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
++ F I LT I +G V + G GSGKS+L + G
Sbjct: 333 --QDNAFHVGPINLT----IKRGELVFLIGGNGSGKSTLAMLLTG--------------- 371
Query: 661 KAYVPQSSWIQTGTIRENILFGK--------DMRQSF---YEEV--------LEGCALNQ 701
Y PQS G I + GK D R+ F + + EG A Q
Sbjct: 372 -LYQPQS-----GEILLD---GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQ 422
Query: 702 DIEMWAD-----GDLSVVGERGIN--LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
IE W S+ R N LS GQK+R+ L A+ D+ + D+ + D
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482
Query: 755 TGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDAADLVLVMKDGKI 797
F Q L+ LL + KT+ +H + AD +L M++G++
Sbjct: 483 F-RREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 38/209 (18%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK----------AYVPQSS- 668
G +AV GS G+GK++L++++ P+ SG+ + ++G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGS-VLLNGMPIDAKEMRAISAYVQQDDL 109
Query: 669 WIQTGTIRENILF----------GKDMRQSFYEEVLEGCALN--QDIEMWADGDLSVVGE 716
+I T T+RE+++F K ++ +EVL+ L + + G +
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG--- 166
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLY 775
LSGG+++R+ A + ++ + D+P S +D+ + Q L GL KT++
Sbjct: 167 ----LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV-QVLKGLAQKGKTIIC 221
Query: 776 TTHQ--LEFLDAADLVLVMKDGKIEQSGK 802
T HQ E + D +++M +G++ G
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 35/199 (17%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--------VEPSGGRILIDGVDI--S 1286
L + P + +G +G GKST ++ L R+ V G+I +DG DI
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT---GKITLDGEDIYDP 91
Query: 1287 MIGLQDLRSRLSIIPQDPMLFQGTVRTN------LDPLEQHSDQEIWEVINKCHLAEIVR 1340
+ + +LR+R+ ++ Q P F ++ N + L + +K L EIV
Sbjct: 92 RLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR----------SKAELDEIVE 141
Query: 1341 QDQR---LLDA---PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
R L + + E G S GQ+Q +C+AR + ++++DE +++D
Sbjct: 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAK 201
Query: 1395 IQQTIREETSRCTVITVAH 1413
+++ I E T++ V H
Sbjct: 202 VEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 5e-07
Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 45/175 (25%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF 681
G + + G GSGK++L ++ E+ G I + G I + + +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG--------EDILEEVLDQLLLI 52
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
VG + + SG + R+ LA A DV
Sbjct: 53 I-------------------------------VGGKKASGSGELRLRLALALARKLKPDV 81
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQK------TVLYTTHQLEFLDAADLVL 790
I D+ S +DA L + LL TV+ TT+ + L A L
Sbjct: 82 LILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 56/231 (24%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAIKVHGKKAYV------ 664
I +G V V GS G+GKS+LL++I G++ SG V + +
Sbjct: 29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88
Query: 665 PQSSWIQTGTIRENILF----GKDM---------RQSFYEEVLEGCALNQDIEMWADGDL 711
P + TI EN+ GK R+S + E L L G
Sbjct: 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL---------GLE 139
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + +R LSGGQ+Q + L A + + D+ +A+D T + + L+ K
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME------LTAK 193
Query: 772 -------TVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
T L TH +E LD + ++++ GKI D+ ++ + L
Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL-----DVTGEEKASL 239
|
Length = 263 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-07
Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 38/296 (12%)
Query: 498 CSAIAFLFWASPTLVS-VITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
S + + A+P S ITFG L++ G V S+L+ F I N I
Sbjct: 302 LSVVLPILIAAPRYFSGQITFGG--LMQAVGAFGQVHSSLSWF------IDNYDA----I 349
Query: 557 AQTKVSLYRIQEFIKE-DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT 615
A + +L R+ EF + + + +P + D A + +++
Sbjct: 350 ADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGI------TLENLSLRTP 403
Query: 616 DKMKIMK--------GSKVAVCGSVGSGKSSLLSSILGEIPRISGA-AIKVHGKKAYVPQ 666
D ++ G ++ + G G+GK+SLL ++ G P SG ++ ++PQ
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463
Query: 667 SSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
++ GT+RE + + D + VL L E L LSG
Sbjct: 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAE-----RLDEEDRWDRVLSG 518
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
G++QR+ AR + D+ SA+D T L+ Q L L TV+ H+
Sbjct: 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 23/224 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+++ +L Y P L+ I T GE + V+G +G GK+TL+ + V G I
Sbjct: 2 LQISHLYADY-GGKP-ALEDINLTLESGELLV-VLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1338
+DG + G + R + + +L V+ N+ Q + + K EI
Sbjct: 59 TLDGKPVEGPGAE----RGVVFQNEGLLPWRNVQDNVAFGLQLAG------VEKMQRLEI 108
Query: 1339 VRQDQRLLDAPVAEDGENW--SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1396
Q + + AE W S GQRQ V +AR L ++L+LDE ++D T +Q
Sbjct: 109 AHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 1397 Q---TIREETSRCTVITVAHRIPTVI--DNDLVLVL-DEGKVLE 1434
+ +ET + V+ + H I + +LVL+ G+V+E
Sbjct: 169 TLLLKLWQETGK-QVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGG QR+ +A A+ I D+P + +D + K L L +L TH
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL-LRELRQLFGTGILLITH 184
Query: 779 QLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
L + AD V VM DG+I + G +++ + E R++ +
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-07
Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 39/225 (17%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG-------------VDISMIGLQ 1291
GEK + ++G +GSGKST+++ L + G+I ++G V L+
Sbjct: 25 AGEK-VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83
Query: 1292 DLRSRLSIIPQDPMLF----------QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1341
+R+++ ++ Q LF + V + + + E+++ LA+
Sbjct: 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-ELLDMVGLAD---- 138
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
+ P G GQ+Q V +AR L + ++++ DE T+++D + IR
Sbjct: 139 --KADHMPAQLSG-----GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191
Query: 1402 ETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443
S T++ V H + + D V D+G+++E P ++
Sbjct: 192 LASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 44/167 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I + A+ G G GKS+ L ++ L +I G + + G+ Y Q
Sbjct: 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVNQL 82
Query: 672 ---TG-----------TIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
G +I +N+ +G KD ++ E+ L+G AL W +
Sbjct: 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL------WDE- 135
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D
Sbjct: 136 ----VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
TI ++I+FG EE + A + IE+ D S + LSGGQK+R+ LA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA--KYIEL-VGLDESYLQRSPFELSGGQKRRVALAG 178
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLE-FLDAADLVLV 791
+ D +FD+P + +D G + L Q KT++ TH L+ L+ +
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 792 MKDGKIEQSGKYEDLIADQN 811
KDGKI + G D+++D
Sbjct: 238 FKDGKIIKDGDTYDILSDNK 257
|
Length = 305 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-07
Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 51/257 (19%)
Query: 1236 VLKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG--GRILIDGVDISMIGLQD 1292
+L G+T PGE + V+G +GSGKSTL+ AL ++ + G IL + + Q
Sbjct: 83 ILNGVTGMASPGEI-LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QI 138
Query: 1293 LRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHL----AEIVRQDQ-RLL 1346
L+ R + QD +L+ TVR E + C L + +Q++ +
Sbjct: 139 LK-RTGFVTQDDILYPHLTVR---------------ETLVFCSLLRLPKSLTKQEKILVA 182
Query: 1347 DAPVAEDG----ENW----------SVGQRQLVCLARVLLKKKRILVLDEATASID-TAT 1391
++ ++E G EN S G+R+ V +A +L +L+LDE T+ +D TA
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
Query: 1392 DNVIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQLLE-----D 1444
++ T++T H+ + + D VLVL EG+ L + +
Sbjct: 243 YRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVG 302
Query: 1445 NSSSFSKLVAEFLRRTS 1461
S SF A+FL +
Sbjct: 303 FSPSFPMNPADFLLDLA 319
|
Length = 659 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 8e-07
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 25/207 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV--------------- 664
I KG V++ G GSGKS+ I G G +K+ G+
Sbjct: 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK-VKIDGELLTAENVWNLRRKIGMVFQ 88
Query: 665 -PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
P + ++ T+ +++ FG + + EE+++ D + A L LSG
Sbjct: 89 NPDNQFV-GATVEDDVAFGMENQGIPREEMIK----RVDEALLAVNMLDFKTREPARLSG 143
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLE 781
GQKQR+ +A + ++ I D+ S +D TG + + + + TVL TH L+
Sbjct: 144 GQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEIMRVIHEIKEKYQLTVLSITHDLD 202
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
++D +LVMK G+I + +L A
Sbjct: 203 EAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 36/200 (18%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK----VHGKKAY 663
K +K D + + A+ G G GKS+ L ++ I G I + G+ Y
Sbjct: 17 KFEALKGID-LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 664 VPQSSWIQTG---------------TIRENILFG------KDMR--QSFYEEVLEGCALN 700
P +Q +I EN+++G KD E L+ A+
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+++ + E ++LSGGQ+QR+ +AR + DV + D+P SA+D + T +
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI- 187
Query: 761 KQCLMGLLSQKTVLYTTHQL 780
+ L+ L Q T++ TH +
Sbjct: 188 ENMLLELRDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-07
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQ------ 666
I KG + + G G+GK++LL + G P RI+G + + +P
Sbjct: 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN-RLRGRQLPLLRRRIG 82
Query: 667 -----SSWIQTGTIRENILF-----GKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVV 714
+ T+ EN+ GK R Q L L + + +
Sbjct: 83 VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE------ 136
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQ-CLMGLLSQ 770
LSGG++QR+ +ARA+ ++ + + D+P +D L K+ G
Sbjct: 137 -----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT--- 188
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
TV+ TH L +D A V+++ DG+
Sbjct: 189 -TVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 53/233 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY---------------- 663
+ G A+ G G+GKS+L+ +L I + I ++ Y
Sbjct: 28 VYPGEIHALLGENGAGKSTLMK-VLSGIHEPTKGTITINNI-NYNKLDHKLAAQLGIGII 85
Query: 664 VPQSSWIQTGTIRENILFG---------------KDMRQSFYEEVLEGCALNQDIEMWAD 708
+ S I T+ EN+ G ++MR +L L D++
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-AAMMLLRVGLKVDLD---- 140
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
E+ NLS KQ +++A+ + ++ V I D+P S++ +LF +M L
Sbjct: 141 -------EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LIMNQL 191
Query: 769 SQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ ++Y +H+L E D VMKDG SG D+ N ++VR M
Sbjct: 192 RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV---SNDDIVRLM 241
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-07
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVE-PSGGRILIDG--VDISMIGLQDLRSRLSIIPQD--- 1303
+G+ G G+G++ L+Q LF G I IDG V I Q + ++++P+D
Sbjct: 291 LGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP-QQAIAQGIAMVPEDRKR 349
Query: 1304 ----PMLFQGTVRTNLDPLEQHSDQEIWEVINKCH-LAEIVRQDQRL------LDAPVAE 1352
P++ G T L L++ + I+ L I+ QRL + +A
Sbjct: 350 DGIVPVMGVGKNIT-LAALDRFTG---GSRIDDAAELKTILESIQRLKVKTASPELAIA- 404
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIREETSRCTV 1408
S G +Q LA+ LL +IL+LDE T ID +I Q +++ + +
Sbjct: 405 ---RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA---I 458
Query: 1409 ITVAHRIPTVID-NDLVLVLDEGKV 1432
I ++ +P V+ +D VLV+ EGK+
Sbjct: 459 IVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-06
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 43/219 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW 669
G VA+ G G+GKS+LL ++ GE+ SG ++++G+ +A +PQ S
Sbjct: 28 GEVVAILGPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLADWSPAELARRRAVLPQHSS 86
Query: 670 IQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQ 727
+ T+ E + G R E AL A DL+ + R LSGG++Q
Sbjct: 87 LSFPFTVEEVVAMG---RAPHGLSRAEDDALVA--AALAQVDLAHLAGRDYPQLSGGEQQ 141
Query: 728 RIQLARA-----VYSNSDVYIF-DDPFSAVD-AHTGTHLFKQCLMGLLSQKT------VL 774
R+QLAR ++ D+P SA+D AH + ++ L Q V+
Sbjct: 142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVI 195
Query: 775 YTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQN 811
H L L A AD ++++ G++ G +++ +
Sbjct: 196 VVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVLTPET 233
|
Length = 258 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 66/268 (24%), Positives = 125/268 (46%), Gaps = 55/268 (20%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE +N+ + PT VL I + + ++G +GSGKSTL++ + ++ E + G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNLDP----LE--------------Q 1320
+DG+ + D + +I Q+ M+FQ + L P LE +
Sbjct: 60 VDGLKV-----NDPKVDERLIRQEAGMVFQ---QFYLFPHLTALENVMFGPLRVRGASKE 111
Query: 1321 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380
++++ E++ K LAE R P G GQ+Q V +AR L K ++++
Sbjct: 112 EAEKQARELLAKVGLAE------RAHHYPSELSG-----GQQQRVAIARALAVKPKLMLF 160
Query: 1381 DEATASIDTATDN---VIQQTIREETSRCTVIT----VAHRIPTVIDNDLVLVLDEGKVL 1433
DE T+++D + + Q + EE ++T A ++ + + + +D+G++
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL-----IFIDKGRIA 215
Query: 1434 EYDSPRQLLEDNSSSFSKLVAEFLRRTS 1461
E P+ L+ N S+ + EFL+ S
Sbjct: 216 EDGDPQVLI-KNPP--SQRLQEFLQHVS 240
|
Length = 240 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHGKKA--------YVPQSSWIQT 672
G +AV G GSGKS+LL+++ G I +G + + K +V Q +
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 673 G-TIRENILF----------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE---RG 718
T+RE ++F K + E V+ L + +++G RG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRG 206
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
I SGG+++R+ +A + N + I D+P S +DA T + L L + KT++ +
Sbjct: 207 I--SGGERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVLTLGSLAQKGKTIVTSM 263
Query: 778 HQ--LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
HQ D VLV+ +G+ GK D +A
Sbjct: 264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 59/217 (27%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
+LK I+ +F PG KIGV+G G+GKSTL+ RI+ GVD G
Sbjct: 22 ILKDISLSFFPG-AKIGVLGLNGAGKSTLL------------RIMA-GVDKEFEG----E 63
Query: 1295 SRLS------IIPQDPMLFQG-TVRTN-----------LDPLEQHSDQ------------ 1324
+R + +PQ+P L TVR N LD +
Sbjct: 64 ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALA 123
Query: 1325 ----EIWEVINKCHLAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKR 1376
E+ E+I+ ++ Q + +DA P S G+R+ V L R+LL+K
Sbjct: 124 AEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 1377 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413
+L+LDE T +D + ++Q + + TV+ V H
Sbjct: 184 MLLLDEPTNHLDAESVAWLEQFLHDYPG--TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR---VVE--PS 1274
IE ENL + Y T L I ++G +G GKST ++ L R +VE
Sbjct: 8 IETENLNLFY--TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKI 65
Query: 1275 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINK 1332
G ++ +G +I + + +LR ++ ++ Q P F ++ N+ +I +K
Sbjct: 66 EGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS-----YGPKIHGTKDK 120
Query: 1333 CHLAEIVRQDQRL------LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
L EIV Q + + + + + S GQ+Q +C+AR L + ++++DE T++
Sbjct: 121 KKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180
Query: 1387 IDTATDNVIQQTIREETSRCTVITVAHRI 1415
+D + I++ I T+I V H +
Sbjct: 181 LDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+G +A+ G+ G+GKS+LL + G + R A+ + G+ + ++ R
Sbjct: 13 FAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQSGAVLIDGEPLDYSRKGLLERRQ-RV 70
Query: 678 NILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVGERGIN------LSG 723
++F Q F +V + A LN ++E L+ VG G+ LSG
Sbjct: 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSG 130
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLE 781
G+K+R+ +A AV DV + D+P + +D G L L ++ TV+ +TH ++
Sbjct: 131 GEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRLRAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 34/221 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS----SWIQTGTI 675
I G +A+ G GSGKS SILG +P S AA G + + S Q +
Sbjct: 33 IEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAASERQLRGV 90
Query: 676 REN---ILFGKDMR-----QSFYEEVLEGCALNQDI--EMWADGDLSVVGERGI------ 719
R N ++F + M + +++ E L++ + L ++ GI
Sbjct: 91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-- 771
LSGGQ+QR+ +A A+ + D+ I D+P +A+D + L+ L +
Sbjct: 151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--LLKELQAELG 208
Query: 772 -TVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810
+L+ TH L + AD V VM+ G+I ++G E L A
Sbjct: 209 MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP 249
|
Length = 534 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 66/230 (28%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHGKK--------AYVP 665
+ + +GS V + G G+GK++LL +I G + +G A V A VP
Sbjct: 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM-----------WADGDLSVV 714
Q + ++ F D+RQ +EM W + D + V
Sbjct: 84 QDT---------SLSFEFDVRQV--------------VEMGRTPHRSRFDTWTETDRAAV 120
Query: 715 GERGIN--------------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
ER + LSGG++QR+ LARA+ + V + D+P +++D +
Sbjct: 121 -ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAA---DLVLVMKDGKIEQSGKYEDLI 807
+ + KT + H L+ AA D ++++ DG++ +G D++
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGA----AIKVHGKKAYVPQSSWIQ----------- 671
A+ G G GKS+LL ++ +SGA A+ + + Y P +
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 672 ----TGTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+I +N+ FG M QS +EV+E +L Q +W D + + G+ LSG
Sbjct: 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEK-SLRQ-AALW-DEVKDNLHKSGLALSG 150
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-- 781
GQ+QR+ +AR + +V + D+P SA+D T ++ + L T+ TH ++
Sbjct: 151 GQQQRLCIARVLAIEPEVILMDEPCSALDP-VSTMRIEELMQELKQNYTIAIVTHNMQQA 209
Query: 782 --------FLDAADLVLVMKDGKI 797
FL DLV + G+I
Sbjct: 210 ARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 627 AVCGSVGSGKSSLL---SSILGEIP--RISGAAIKVHGKKAYVPQSSWIQTG-------- 673
A+ G G GKS+ L + + +I +I+G IK G+ Y + ++
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDDIENIKITGE-IKFEGQNIYGSKMDLVELRKEVGMVFQ 92
Query: 674 -------TIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
++ +N+ +G K++ EE L+ A+ ++ + D +
Sbjct: 93 QPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA----- 147
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
SGGQ+QRI +ARA+ V + D+P SA+D + + + ++ LM L Q T + TH
Sbjct: 148 --FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLMELKHQYTFIMVTH 204
Query: 779 QLEFLD-AADLVLVMKDGKIEQSGKYEDL 806
L+ +D + +G + ++G E++
Sbjct: 205 NLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 42/221 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQSSWIQ 671
+ I GS A G GSGKS+++ + G +P R+ I K + Q
Sbjct: 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ----- 82
Query: 672 TGTIRENI--LFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG------ 715
IR+ + +F Q F E VL+ A ++ E A L++VG
Sbjct: 83 ---IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 716 ERG-INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQK 771
E+ LSGGQ +R+ +A + + + D+P + +D L FK+ L Q
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK-----LHQS 194
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIAD 809
T++ TH + + + AD V V++ GK+ SGK +D+ D
Sbjct: 195 GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-------- 669
M I + A+ G G GKS+ + L I + G +KV G + Q+ +
Sbjct: 28 MDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP-VKVEGVVDFFGQNIYDPRININR 85
Query: 670 --IQTG-----------TIRENILFGKDMRQS----------FYEEVLEGCALNQDIEMW 706
Q G +I EN+ +G +R S E L+G AL Q+++
Sbjct: 86 LRRQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVK-- 141
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+ + + LSGGQ+QR+ +ARA+ V + D+P SA+D T ++ +
Sbjct: 142 -----DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP-IATMKVEELIHS 195
Query: 767 LLSQKTVLYTTHQLE 781
L S+ T+ TH ++
Sbjct: 196 LRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 72/265 (27%), Positives = 108/265 (40%), Gaps = 64/265 (24%)
Query: 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281
L +L + N TLP +GIT F GR+G+GK++LI A+ + P GRI+++
Sbjct: 10 LGDLCLTVNLTLPA--QGITAIF---------GRSGAGKTSLINAISGLTRPQKGRIVLN 58
Query: 1282 G---VDISM-IGLQDLRSRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
G D I L + R+ + QD LF VR NL S
Sbjct: 59 GRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVA--------QFD 110
Query: 1337 EIVR--QDQRLLDA-PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
+IV + LLD P + G G++Q V + R LL +L++DE AS+D
Sbjct: 111 KIVALLGIEPLLDRYPGSLSG-----GEKQRVAIGRALLTAPELLLMDEPLASLDLPRK- 164
Query: 1394 VIQQTIRE---------ETSRCTVITVAHRIPTVI---DNDLVLVLDEGKVLEYDS---- 1437
RE ++ V+H + ++ D V+VL++GKV +
Sbjct: 165 ------RELLPYLERLAREINIPILYVSHSLDEILRLADR--VVVLEQGKVKAFGPLEEV 216
Query: 1438 -------PRQLLEDNSSSFSKLVAE 1455
P E+ SS V E
Sbjct: 217 WASSAMRPWLPKEEQSSILKVTVLE 241
|
Length = 352 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 58/189 (30%)
Query: 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307
+ I +VG GSGK+TL +AL R + P GG ++ + + + D + + +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS 62
Query: 1308 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367
RL L
Sbjct: 63 GE-------------------------------LRLRLA--------------------L 71
Query: 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIR-------EETSRCTVITVAHRIPTVID 1420
A K +L+LDE T+ +D + ++ + TVI + +
Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131
Query: 1421 NDLVLVLDE 1429
L D
Sbjct: 132 ALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 38/218 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY--------- 663
+KI+K S A+ G G GKS+ L ++ L E +I G I GK Y
Sbjct: 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI-YEGKNIYSNNFDILEL 86
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q+ +I +NI +G KD ++ E+ L+ AL +++
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK----- 141
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+ ++LSGGQ+QR+ +AR + +V + D+P SA+D T ++ ++ L
Sbjct: 142 --DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINLKE 198
Query: 770 QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806
T++ TH ++ +D +G IE+ ++L
Sbjct: 199 SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 31/181 (17%)
Query: 1253 VGRTGSGKSTLIQALFRV--VEPSG---GRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307
+G +G GKST+++ L R+ V P G +L+DG D+ G+ + R +I M+F
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTI----GMVF 91
Query: 1308 QGTVRTNLDPLEQHSDQ-----EIWEVINKCHLAEIVRQDQR----------LLDAPVAE 1352
Q R N P D ++ V NK L E+V + R LD P
Sbjct: 92 Q---RPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1412
G S GQ+Q +C+AR + + +L++DE +++D + I+ I E T++ V
Sbjct: 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT 204
Query: 1413 H 1413
H
Sbjct: 205 H 205
|
Length = 258 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP---RISG-----------AAIKVHGKKAYVPQSS 668
G V V G GSG S+LL ++ + G A K G+ YV +
Sbjct: 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEED 92
Query: 669 W-IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
T T+RE + F + G+ V RGI SGG+++
Sbjct: 93 VHFPTLTVRETLDFALRCK----------------------GNEFV---RGI--SGGERK 125
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQ--LEFL 783
R+ +A A+ S + V +D+ +D+ T +C+ M + + T + +Q E
Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLDSST-ALEILKCIRTMADVLKTTTFVSLYQASDEIY 184
Query: 784 DAADLVLVMKDGKI 797
D D VLV+ +G+
Sbjct: 185 DLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ----DPM 1305
IG+VG G GK+T + L V++P G + + + IS PQ D
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISY------------KPQYIKPD-- 412
Query: 1306 LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWSVGQRQ 1363
+ GTV L + ++ EI++ Q +RLLD V + S G+ Q
Sbjct: 413 -YDGTVEDLLRSITDDLGSSYYKS-------EIIKPLQLERLLDKNVKD----LSGGELQ 460
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID 1420
V +A L + + +LDE +A +D + + IR E T + V H I +ID
Sbjct: 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMID 518
|
Length = 590 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS---SWIQTGTIRENI--LF 681
A+ G G GKS+ + ++ I + +K+ G+ Y + + +R+NI +F
Sbjct: 42 AIIGPSGCGKSTFIKTLNLMIQMVPN--VKLTGEMNYNGSNILKGKVDLVELRKNIGMVF 99
Query: 682 --GKDMRQSFYEEVLEGCALN----------------QDIEMWADGDLSVVGERGINLSG 723
G QS ++ V G ++ +D+ +W D + + ++LSG
Sbjct: 100 QKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALW-DEVKDRLHTQALSLSG 158
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
GQ+QR+ +ARA+ +N DV + D+P SA+D T ++ ++ L + T++ TH ++
Sbjct: 159 GQQQRLCIARALATNPDVLLMDEPTSALDP-VSTRKIEELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------ 661
P +K D +K+ S A+ G G+GKS+LL + G + SG+ I GK+
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSS 67
Query: 662 --------AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
+ V Q + + ++ +N+ G+ + + V + ++ + D+
Sbjct: 68 KEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF--VDQDKMYRDTKAIFDELDID 125
Query: 713 V-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + LS Q Q I++A+A N+ + I D+P S++ HLF ++ L ++
Sbjct: 126 IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKER 183
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
++Y +H++ E D + +++DG+ + L D+
Sbjct: 184 GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDK 225
|
Length = 491 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIGLQDLRSRLSIIP 1301
GE + ++G +G GKSTL+ + + G + ++ + M L + ++ I+
Sbjct: 27 KGEI-VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPAAQRQIGILF 83
Query: 1302 QDPMLF-QGTVRTNL------DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354
QD +LF +V NL + + L QD L
Sbjct: 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATL-------- 135
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1414
S GQR V L R LL + + L+LDE + +D A + +Q + E A
Sbjct: 136 ---SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR-------AAG 185
Query: 1415 IPTV-IDNDLVLVLDEGKVLE 1434
IPTV + +DL V +V+E
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIE 206
|
Length = 213 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 20/238 (8%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
S ++ E L + Y V + +T P ++G G GKSTL++ L R++ P+
Sbjct: 4 SVARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH 61
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDP-----MLFQGTV---RTNLDPLEQHSDQEIW 1327
G + +DG I +++ R+ ++ Q+ + Q V R PL +E
Sbjct: 62 GHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE 121
Query: 1328 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
E + K A + L D V + S GQRQ +A VL ++ I++LDE T +
Sbjct: 122 EAVTKAMQATGITH---LADQSV----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174
Query: 1388 DTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLV-LDEGKVLEYDSPRQLL 1442
D + + + + E T+ V H + L+ L EGK++ +P++++
Sbjct: 175 DISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I+L + Y L IT P + + ++G +G+GKS+L++ L + P G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1280 IDG--VDISMI----GLQDLRSRLSIIPQDPMLF-QGTVRTNL--DPL------EQHSDQ 1324
I G D S ++DLR + ++ Q L+ TV+ NL P + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA 120
Query: 1325 EIWEVINKCHLAEIVRQDQRLLDA-PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383
+++ + L D P+ G GQ+Q V +AR L+ + ++L+ DE
Sbjct: 121 RAEKLLKRLRLKP-------YADRYPLHLSG-----GQQQRVAIARALMMEPQVLLFDEP 168
Query: 1384 TASIDTATDNVIQQTIRE--ETSRCTVIT-----VAHRIPTVIDNDLVLVLDEGKVLE 1434
TA++D I I+E ET VI VA + + V+ ++ G ++E
Sbjct: 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTAS-----RVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI---LIDGVDISMIGLQD------LR 1294
+PGE +G+VG +GSGKSTL+ L + P G + G ++ + L + +R
Sbjct: 27 YPGEV-LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMR 85
Query: 1295 SRLSIIPQDP-------MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1347
+ + Q+P + + L + I L E+ R+ D
Sbjct: 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW-LEEVEIDPTRIDD 144
Query: 1348 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NVIQQTIREET 1403
P A +S G +Q + +AR L+ + R++ +DE T +D + ++++ +R+
Sbjct: 145 LPRA-----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-- 197
Query: 1404 SRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
VI V H + + +LV+ +G+V+E Q+L+D +++L+
Sbjct: 198 LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQKQRIQL 731
+I +N+L G + + G A + ++ +W D + + LSGGQ+Q + L
Sbjct: 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-DAVKDRLSDSPFRLSGGQQQLLCL 174
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-EFLDAADLVL 790
AR + N +V + D+P SA+D T T ++ + L + TV+ TH L + +D
Sbjct: 175 ARTLAVNPEVLLLDEPTSALDP-TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAA 233
Query: 791 VMKDGKIEQSGKYEDLIAD-QNSELVR 816
+ DG++ + G E L + +++E R
Sbjct: 234 LFFDGRLVEEGPTEQLFSSPKHAETAR 260
|
Length = 276 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 43/216 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQ 666
I KG ++ G G+GKS+LLS + + + SG I + G + + + Q
Sbjct: 24 IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSILKQ 82
Query: 667 SSWIQTG-TIRENILFGK----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN- 720
+ I + T+R+ + FG+ R + + + +N+ IE L + +R ++
Sbjct: 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI----INEAIEYL---HLEDLSDRYLDE 135
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQ------KT 772
LSGGQ+QR +A + ++D + D+P + +D K +M +L + KT
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD-------MKHSVQIMKILRRLADELGKT 188
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807
++ H + F +D ++ +K+GK+ + G +++I
Sbjct: 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL------------SSILGEIPRISGAAIKVHGKK---- 661
M+I + S VA G G GKS+ L + + GEI RI G I G +
Sbjct: 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIYDKGVQVDEL 82
Query: 662 ----AYVPQSSWIQTGTIRENILFG------KD---MRQSFYEEVLEGCALNQDIEMWAD 708
V Q +I EN+ +G KD +RQ EE L+G AL +++
Sbjct: 83 RKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV-EETLKGAALWDEVK---- 137
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ E LSGGQ+QR+ +ARA+ + V + D+P SA+D T ++ + L
Sbjct: 138 ---DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP-ISTAKVEELIHELK 193
Query: 769 SQKTVLYTTHQLE 781
T++ TH ++
Sbjct: 194 KDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 49/222 (22%)
Query: 1253 VGRTGSGKSTLIQALFR------VVEPSGGRILIDGVDISMIGLQDLR----SRLSIIPQ 1302
VG +GSGKS ++ R VV PSG I G + Q LR +++++I Q
Sbjct: 41 VGESGSGKSVTALSILRLLPSPPVVYPSG-DIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99
Query: 1303 DPMLFQGTVRTNLDPLEQHS-DQEIWEVIN-------KCHLAEIV--------RQ-DQRL 1345
+PM+ +L+PL H+ +++++EV++ + EI+ RQ +RL
Sbjct: 100 EPMV-------SLNPL--HTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRL 150
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ET 1403
D P S G+RQ V +A LL + +L+ DE T ++D + I Q +RE +
Sbjct: 151 TDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205
Query: 1404 SRCTVITVAHRIPTV---IDNDLVLVLDEGKVLEYDSPRQLL 1442
++ + H + V D V V+ G+ +E + L
Sbjct: 206 LNMGLLFITHNLSIVRKLADR--VAVMQNGRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 46/187 (24%)
Query: 627 AVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY----VPQSSWIQTG---- 673
A+ G G GKS+LL + L E +I+G + + G+ Y V I+ G
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK-LTMDGEDIYGNIDVADLR-IKVGMVFQ 90
Query: 674 -------TIRENILFG------KDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVGER- 717
+I EN+ +G KD + E L G AL W + V +R
Sbjct: 91 KPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL------WDE-----VKDRL 139
Query: 718 ---GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
LSGGQ+QR+ +AR + DV + D+P SA+D TH ++ + L T++
Sbjct: 140 KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEELKKNYTIV 198
Query: 775 YTTHQLE 781
TH ++
Sbjct: 199 IVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 1243 TFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1300
+F +K +G +G G+GKST ++ + + P G + + G D+ + ++++ + +
Sbjct: 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQRNIGYL 80
Query: 1301 PQ-DPMLFQGTVRTNLDPL-------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1352
P+ +P+ VR L + Q Q + E+I L + + +
Sbjct: 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL---RPEQHKKIGQ---- 133
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVA 1412
S G RQ V LA+ L+ ++L+LDE T +D I+ I+ T+I
Sbjct: 134 ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189
Query: 1413 HRIPTV--IDNDLVLVLDEGKVL 1433
H + V I + V+++++GK++
Sbjct: 190 HIMQEVEAICDR-VIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 40/203 (19%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY---- 663
KK IK D M+ K A+ G GSGKS+ L S+ I A +V G+ Y
Sbjct: 32 KKEAIKGID-MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIA--RVTGQILYRGID 88
Query: 664 -----------------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCA 698
V Q +I ENI F KD + E L+ A
Sbjct: 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA 148
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
L ++ DL + + LSGGQ+QR+ +ARA+ D+ + D+P SA+D T
Sbjct: 149 LWDQVK----DDL---HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTM 200
Query: 759 LFKQCLMGLLSQKTVLYTTHQLE 781
++ + L T++ TH ++
Sbjct: 201 QLEETMFELKKNYTIIIVTHNMQ 223
|
Length = 267 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------A 662
+ +G VA+ G GSGKS+LL+ +L + S +++ G+
Sbjct: 33 VKRGETVAIVGPSGSGKSTLLA-VLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG 91
Query: 663 YVPQS-SWIQTGTIRENI-----LFGKDMRQSFY--EEVLEGCALNQDIEMWADGDLSVV 714
+V QS I T EN+ L G+ S + +LE L + + +
Sbjct: 92 FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA------ 145
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
LSGG++QR+ LARA DV D+P +D TG + L+ L+++
Sbjct: 146 -----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD--LLFALNRERGT 198
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIE 798
T++ TH + D L ++ G++
Sbjct: 199 TLVLVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296
L+ + T PG +VG GSGKSTL +AL V + G+I I G Q L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 1297 L-SIIPQD-------PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV-----RQDQ 1343
L + +PQ P+L + V + W K +IV R D
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVV------MMGRYGHMGWLRRAKKRDRQIVTAALARVD- 131
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-E 1402
+++ + GE S GQ++ V LAR + ++ ++++LDE +D T+ I +RE
Sbjct: 132 -MVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 1403 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVL 1433
T++ H + +V + V+ +G VL
Sbjct: 190 DEGKTMLVSTHNLGSVTEFCDYTVMVKGTVL 220
|
Length = 272 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 1240 ITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQDLRSR 1296
I+ T P K ++G +G GK+TL++ + + P G IL DG +I S L +R R
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 1297 LSIIPQDPMLFQ-GTVRTNLD-------PLEQHSD--QEIWEVINKCHLAEI-VRQDQRL 1345
+S MLFQ G + T+++ PL +H+ + L + +R +L
Sbjct: 86 MS------MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL 139
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1405
+ + + S G + LAR + + +++ DE D T V+ + I E S
Sbjct: 140 MPSEL-------SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA 192
Query: 1406 --CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445
T + V+H +P V+ D ++ + K++ + S + L +
Sbjct: 193 LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 40/207 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR--- 676
I +G +A+ GS GSGKS+LL +LG + + + +G+ + + S +R
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAKAELRNQK 88
Query: 677 -----------------ENI----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
EN+ L GK LE A A G
Sbjct: 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA--------AVGLEHRAN 140
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---T 772
R LSGG++QR+ +ARA+ +N + + D+P +DA +F+ L+G L++
Sbjct: 141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQGTA 198
Query: 773 VLYTTHQLEFLDAADLVLVMKDGKIEQ 799
L TH L+ L M+DG++
Sbjct: 199 FLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 47/261 (18%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
SS + ++N+ ++ LK I+ + + + ++G +G GK+TL++ + + +
Sbjct: 1 SSPYLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA 58
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQD-PMLFQG-------TVRTNLD-PLEQHSDQEI 1326
G I G DI+ RL +D ++FQ TV N+ L+
Sbjct: 59 GTIYQGGRDIT---------RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---- 105
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDG--ENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
+ + +AE V + L+ P +E S GQ+Q V LAR L +L+LDE
Sbjct: 106 ---MGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162
Query: 1385 ASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVIDN-------DLVLVLDEGKVLEY 1435
+++D ++ IR+ R T I V H D D ++V++ G + +
Sbjct: 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTH------DQEEALSMADRIVVMNHGVIEQV 216
Query: 1436 DSPRQLLEDNSSSFSKLVAEF 1456
+P+++ ++ F VA+F
Sbjct: 217 GTPQEIYRHPATPF---VADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-06
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKA--------------- 662
+G A+ G GSGKS+L+ +I + +G I + K
Sbjct: 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVF 91
Query: 663 YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
P+S + RE I+FG ++F + E + M V+ + +S
Sbjct: 92 QFPESQLFEDTVERE-IIFGP---KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLYT 776
GGQ ++I + + N D+ + D+P + +D + K+ +M LL KT++
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS-----KRQVMRLLKSLQTDENKTIILV 202
Query: 777 THQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+H + E AD V+VMK+G I ++L D+
Sbjct: 203 SHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-06
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 50/202 (24%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-YVPQSSWI-QTGTIRENIL 680
G+K+ V G G+GKS+LL + G +G A G K Y+PQ + T T+REN+
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE 90
Query: 681 FG----KDMRQSFYE-----------------------EVLEGCA---LNQDIEMWAD-- 708
G KD F E E+++ L++ +E+ D
Sbjct: 91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150
Query: 709 ----GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQ 762
D V LSGG+++R+ L R + S D+ + D+P + +DA + L Q
Sbjct: 151 RCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
Query: 763 CLMGLLSQKTVLYTTHQLEFLD 784
G TV+ TH FLD
Sbjct: 206 EYPG-----TVVAVTHDRYFLD 222
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
++ +GS VA+ G GSGKS+L+ + SG I + G P++ +R+
Sbjct: 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHI-TPETGNKNLKKLRKK 86
Query: 679 I--LFGKDMRQSFYEEVLEGC-------------ALNQDIEMWADGDLS--VVGERGINL 721
+ +F Q F VL+ A + ++ LS ++ + L
Sbjct: 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL- 780
SGGQ +R+ +A + ++ D+P + +D + + + TV+ TH +
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ + AD VLV++ GK+ + +++ +D+
Sbjct: 207 DVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
Length = 287 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 42/205 (20%)
Query: 1233 LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI--DGVDISMIGL 1290
LP VL+ ++ + + + + G +GSGKSTL+++L+ P G+IL+ +G + ++
Sbjct: 24 LP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 1291 Q-----DLRSR--------LSIIPQ--------DPMLFQGTVRTNLDPLEQHSDQEIWEV 1329
+ ++R L +IP+ +P+L +G R + + ++
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREV-------ARAKAADL 135
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+ + +L E RL A +S G++Q V +AR + IL+LDE TAS+D
Sbjct: 136 LTRLNLPE------RLWSLAPA----TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
Query: 1390 ATDNVIQQTIREETSR-CTVITVAH 1413
V+ + IRE +R ++ + H
Sbjct: 186 TNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGGQ+QR+ +ARA+ + + D+P SA+D T++ + + L T++ TH
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQELKKNFTIIVVTHS 207
Query: 780 L-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ + +D V + G+I + +++ + S ++
Sbjct: 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKR 246
|
Length = 251 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 46/242 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI--------------------KV 657
+ K V G+ GSGKS+++ G I +G I K
Sbjct: 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKE 91
Query: 658 HGKKAYVPQSSWIQTGTIRENILFGK----DMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
G P+ Q TI ++I FG + +Q Y++V E L Q E +
Sbjct: 92 IGLVFQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK----- 145
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
LSGGQK+R+ LA + + + + D+P +D G F L + K
Sbjct: 146 --RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP-KGEEDFINLFERLNKEYKK 202
Query: 772 TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830
++ TH + + L AD V+VM +GK+ G ++ ++Q EL+ ++ +++P
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQ--ELLTKI--------EIDP 252
Query: 831 PQ 832
P+
Sbjct: 253 PK 254
|
Length = 289 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-- 1293
VLKGI+ + + +VG +GSGKSTL+ L + +P+ G + G D++ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1294 --RSRLSIIPQDPMLFQGTVRTNLDP-LEQHSDQEIWEVI----NKCHLAEIVRQDQRL- 1345
R I FQ R +L L + E+ V K L QRL
Sbjct: 83 LRREHFGFI------FQ---RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLG 133
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1405
L+ V S GQ+Q V +AR L+ ++++ DE T ++D+ + + + + R
Sbjct: 134 LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193
Query: 1406 C-TVITVAH 1413
TVI V H
Sbjct: 194 GHTVIIVTH 202
|
Length = 648 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 45/210 (21%)
Query: 623 GSKVAVCGSVGSGKSSLLSSI-LGEIPR-----ISGAAI---KVHGKKA---------YV 664
G + + G G+GKSSLL + L E+PR I+G K KA V
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 665 PQSS--WIQTGTIRENIL--------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
Q W T++EN++ KD + E++L+ L + +
Sbjct: 88 FQQYNLWPHL-TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP------- 139
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--T 772
++LSGGQ+QR+ +ARA+ V +FD+P +A+D + ++ L++ T
Sbjct: 140 ----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--IIKELAETGIT 193
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801
+ TH++E A V+ M++G I + G
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
L+GG ++R+++ARA+ + + D+P +D + + + L++ +VL+ T
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH--VRALARDQGLSVLWAT 190
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H ++ ++A D ++V+ G++ G +L +
Sbjct: 191 HLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEA 230
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI- 1278
IELENL Y L +LK I+ T +IG+VGR G+GKSTL++ + +EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1279 LIDGVDIS 1286
V I
Sbjct: 59 WGSTVKIG 66
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY--------- 663
+ I + A+ G G GKS+ L + L +I G + + GK Y
Sbjct: 25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE-VLLDGKNIYDKDVDVVEL 83
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q +I +N+ +G KD ++ E L+ AL +++
Sbjct: 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK----D 139
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
DL + + LSGGQ+QR+ +AR + DV + D+P SA+D T + ++ L
Sbjct: 140 DLK---KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKK 195
Query: 770 QKTVLYTTHQLE 781
+ T++ TH ++
Sbjct: 196 EYTIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 52/229 (22%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA------------------- 662
G A+ G G+GKS+LL IL + +I + G++
Sbjct: 29 AGQVHALMGENGAGKSTLLK-ILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQE 87
Query: 663 --YVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLS 712
VP+ T+ EN+ G+ + R YE + L DI D D
Sbjct: 88 LHLVPEM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI----DPDTP 137
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
+ LS GQ+Q +++A+A+ N+ V FD+P S++ A LF+ ++ L
Sbjct: 138 LK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEG 190
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ +LY +H++E + A D + V KDG+ + ++D+ +LV+ M
Sbjct: 191 RVILYVSHRMEEIFALCDAITVFKDGRYVAT--FDDMAQVDRDQLVQAM 237
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 30/220 (13%)
Query: 1236 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALF--RVVEPSGGRILIDGVDISMIGLQD 1292
+LKG+ T GE ++G GSGKSTL + + E + G IL G D+ + +
Sbjct: 15 ILKGVNLTVKKGEIHA-IMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE 73
Query: 1293 LRSRLSII--PQDPMLFQGTVRTNLD----PLEQHSDQEIWEVINKCHLAEIVRQDQRLL 1346
R+R + Q P G +NL+ L E ++ ++++ LL
Sbjct: 74 -RARAGLFLAFQYPEEIPGV--SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL 130
Query: 1347 DAP--VAEDGEN--WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD--------NV 1394
N +S G+++ + ++ L + ++ +LDE ID+ D
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE----IDSGLDIDALKIVAEG 186
Query: 1395 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
I + +RE +IT R+ I D V VL +G++++
Sbjct: 187 INR-LREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIP-- 1301
PGE ++ ++G G+GK+T++ + P G +L G D++ GL + + +R I
Sbjct: 27 PGELRV-IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT--GLPEHQIARAGIGRKF 83
Query: 1302 QDPMLFQG-TVRTNLDPLEQHSDQEIWEVI-NKCHLAEIVRQDQRL----LDAPVAEDGE 1355
Q P +F+ TV NL+ L D+ ++ + + E R ++ L L
Sbjct: 84 QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG 142
Query: 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT---IREETSRCTVITVA 1412
S GQ+Q + + +L++ ++L+LDE A + TD ++T ++ + +V+ V
Sbjct: 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSLAGKHSVVVVE 199
Query: 1413 HRIPTV--IDNDLVLVLDEGKVL 1433
H + V I D V VL +G VL
Sbjct: 200 HDMEFVRSIA-DKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF---Q 1308
+ G G+GK++L++ L + P G +L G I R R +L+ Q
Sbjct: 32 IEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR-------RQRDE--YHQDLLYLGHQ 82
Query: 1309 GTVRTNLDPLE----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358
++T L LE D+ +WE + + LA D PV S
Sbjct: 83 PGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-------GFEDVPVR----QLS 131
Query: 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRIP 1416
GQ++ V LAR+ L + + +LDE +ID ++ + + + ++T +P
Sbjct: 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191
Query: 1417 TVIDNDLVLVLDEG 1430
+ +D V L G
Sbjct: 192 --VASDKVRKLRLG 203
|
Length = 204 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
G++LSGGQ+QR+ +ARA+ + +V + D+P SA+D T ++ ++ L T+ T
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDYTIALVT 205
Query: 778 HQLE 781
H ++
Sbjct: 206 HNMQ 209
|
Length = 261 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 35/218 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----KVHGKKAY------------ 663
+ G + G G+GK++L + I G + SG+ + + G +
Sbjct: 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQ 82
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ER 717
+P+ T+ EN++ R + ++ A+ L VG
Sbjct: 83 IPRL--FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP 140
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPF---SAVDAHTGTHLFKQCLMGLLSQK--T 772
LS GQ++R+++ARA+ ++ + + D+P + + L ++ L ++ T
Sbjct: 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE-----LRERGIT 195
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
VL H ++ + AD V V+ G++ G +++ +
Sbjct: 196 VLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 34/189 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL---SSILGEIPRISGAAIKVHGKK------------- 661
M+I + A+ G+ G GKS+ L + + +I +I G +++ GK
Sbjct: 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRKNV 81
Query: 662 AYVPQSSWIQTGTIRENILFG---------KDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
V Q + +I ENI + KD ++ + L+ L ++++
Sbjct: 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------D 134
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
+ + + LSGGQ+QR+ +ARA+ + + D+P SA+D + + ++ L L +
Sbjct: 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLS 193
Query: 773 VLYTTHQLE 781
++ TH ++
Sbjct: 194 MIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281
++NL+ + P+ + + TF + +G G+GK+T + L ++ P+ G +L+
Sbjct: 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990
Query: 1282 GVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVR 1340
G DI L +R L + PQ +LF TV ++ Q + WE + L
Sbjct: 991 GKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WE---EAQLEMEAM 1045
Query: 1341 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400
+ L E+ ++ S G ++ + +A + +++VLDE T+ +D + I +
Sbjct: 1046 LEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105
Query: 1401 EETSRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSP 1438
+ S T+I H + + D + ++ +G++ +P
Sbjct: 1106 KYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-05
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 43/233 (18%)
Query: 1237 LKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL-FRVVEPSG----GRILIDGVDISMIGL 1290
LK ++ PGE + V+G +G+GK+TL+ AL FR P G G +L++G+ I
Sbjct: 41 LKNVSGVAKPGEL-LAVMGSSGAGKTTLMNALAFR--SPKGVKGSGSVLLNGM---PIDA 94
Query: 1291 QDLRSRLSIIPQDPML-----------FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1339
+++R+ + + QD + FQ +R ++ + + EV+
Sbjct: 95 KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVL--------- 145
Query: 1340 RQDQRLLDAP-----VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
Q L V + S G+R+ + A LL +L DE T+ +D+
Sbjct: 146 -QALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 1395 IQQTIRE-ETSRCTVITVAHRIPT--VIDN-DLVLVLDEGKVLEYDSPRQLLE 1443
+ Q ++ T+I H+ P+ + + D ++++ EG+V SP Q +
Sbjct: 205 VVQVLKGLAQKGKTIICTIHQ-PSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 48/212 (22%), Positives = 103/212 (48%), Gaps = 18/212 (8%)
Query: 1237 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1283
+ I+ +FPG K + ++G G+GKSTL++ LF + + G IL G
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60
Query: 1284 DISMIGLQD-LRSRLSIIPQD-PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1341
+I ++ L + +S++ Q+ ++ Q +V N+ L ++ + ++ +K +
Sbjct: 61 EIDFKSSKEALENGISMVHQELNLVLQRSVMDNM-WLGRYPTKGMFVDQDKMYRDTKAIF 119
Query: 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
D+ +D SV Q Q++ +A+ +I+++DE T+S+ N + IR+
Sbjct: 120 DELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 1402 ETSR-CTVITVAHRIPTVID-NDLVLVLDEGK 1431
R C ++ ++H++ + D + +L +G+
Sbjct: 180 LKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ----------- 666
+ + +G A+ G G GK++LL I G+I G I G+ +P
Sbjct: 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGEN--IPAMSRSRLYTVRK 84
Query: 667 --SSWIQTG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
S Q+G + +N+ + +L + + L VG RG
Sbjct: 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMK---------LEAVGLRG 135
Query: 719 I------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
LSGG +R LARA+ D+ +FD+PF D T L K L+ L+
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK--LISELNSAL 193
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T + +H + E L AD ++ D KI G + L A+ + VRQ
Sbjct: 194 GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR-VRQ 241
|
Length = 269 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1292
VL ++ + + + +VG +GSGKSTL+ L + P+ G ++ +G +S + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1293 LRSR-LSIIPQ-DPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
LR++ L I Q +L T N+ PL +I K AEI + +L A
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPL----------LIGKKKPAEINSRALEMLAAV 133
Query: 1350 VAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401
E N S G+RQ V +AR L+ R+++ DE T ++D + I Q + E
Sbjct: 134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190
|
Length = 233 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLSIIPQDPMLFQ 1308
+ +VG G+GKSTL+ + + G I G + +L R R + Q F
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFA 86
Query: 1309 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368
V L L Q D+ E++N +A + D +L + G W Q V LA
Sbjct: 87 MPVWHYL-TLHQP-DKTRTELLN--DVAGALALDDKLGRSTNQLSGGEW-----QRVRLA 137
Query: 1369 RVLLK-------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVI 1419
V+L+ ++L+LDE S+D A + + + + ++ +H + T+
Sbjct: 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLR 197
Query: 1420 DNDLVLVLDEGKVLEYDSPRQLL 1442
+L GK+L ++L
Sbjct: 198 HAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 627 AVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ---------- 671
A+ G G GKS+ L + L R+ G I + G+ Y P ++
Sbjct: 36 ALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDVVELRRRVGMVFQ 94
Query: 672 -----TGTIRENILFG---KDMRQSFY-----EEVLEGCALNQDIEMWADGDLSVVGERG 718
+I EN+ +G ++ Y E L AL +++ + E
Sbjct: 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESA 147
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
+ LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ + L ++ T++ TH
Sbjct: 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHELKARYTIIIVTH 206
Query: 779 QLE 781
++
Sbjct: 207 NMQ 209
|
Length = 253 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHGKKAYVPQSSWIQ-- 671
+ I K S A+ G G GKS+ + ++ I G I + G Y P ++
Sbjct: 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83
Query: 672 -------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
+I +N+ +G +D + EE L+ AL +++ D
Sbjct: 84 KKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD-- 141
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ + LSGGQ+QR+ +AR + + +V + D+P SA+D + T + + + L
Sbjct: 142 -----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKED 195
Query: 771 KTVLYTTHQLE 781
T++ TH ++
Sbjct: 196 YTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 34/159 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK----VHGKKAYVPQSSWIQT--- 672
I +G A+ G G GKS++L S+ I G ++K G Y P+ ++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 673 ------------GTIRENILFGK-------DMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+I ENI FG DM + E L A+ W D
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDE-LVERSLRKAAV------W-DECKDK 147
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+ E G +LSGGQ+QR+ +AR + +V + D+P SA+D
Sbjct: 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVV---EPSGGRILIDGVDISMIG--LQDLR---------- 1294
+ ++G +GSGKSTL++ L ++ + +G I + G + G +D+R
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92
Query: 1295 ------SRLSIIPQDPMLFQGTV---RTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1345
+RLS++ + G+ RT + Q + + + + Q
Sbjct: 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ET 1403
L S GQ+Q V +AR L+++ ++++ DE AS+D + ++ T+R+ +
Sbjct: 153 L-----------SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN 201
Query: 1404 SRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDN 1445
TV+ H++ + + ++ L +G V YD Q ++
Sbjct: 202 DGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDNE 243
|
Length = 262 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 39/205 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
I KG V + G G+GKS+LL I GE R + I V+G + + + +R
Sbjct: 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHD--LSRLKGREIPFLRRQ 80
Query: 679 I--LFGKD----MRQSFYEEV--------LEGCALNQDIEMWADGDLSVVGERG------ 718
I +F +D ++ YE V + + + L +VG +
Sbjct: 81 IGVVF-QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE----VLDLVGLKHKARALP 135
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGG++QR+ +ARA+ + V + D+P +D +M L + TV
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-----IMRLFEEINRLGTTV 190
Query: 774 LYTTHQLEFLDAADL-VLVMKDGKI 797
L TH LE ++ VL ++DG++
Sbjct: 191 LMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1311
+ G G GKS+L + L + GGR+ + +L +PQ P + GT+
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTL 531
Query: 1312 RTNL---DPLEQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
R + D E SD+++ ++++ L I+ ++ A V + + S G++Q
Sbjct: 532 RDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW-SA-VQDWMDVLSGGEKQ 589
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1414
+ +AR+ K + +LDE T+++ + + + RE T+ +V+HR
Sbjct: 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 37/220 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSS 668
G A+ G G GKS+LL + SG + + K A +PQ
Sbjct: 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDKPISMLSSRQLARRLALLPQHH 85
Query: 669 WIQTG-TIRENILFGKDMRQSFY------EEVLEGCALNQ-DIEMWADGDLSVVGERGIN 720
G T+RE + +G+ S + + A+ Q I AD L+ +
Sbjct: 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-------D 138
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQ+QR LA + ++ V + D+P + +D + L + LM L+ KTV+ H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR--LMRELNTQGKTVVTVLH 196
Query: 779 QL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L + D ++V+ +G + G E+++ L+R
Sbjct: 197 DLNQASRYCDHLVVLANGHVMAQGTPEEVMTP---GLLRT 233
|
Length = 255 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M+I K S A+ G G GKS+ + + L + RI G + + G+ Y P ++
Sbjct: 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK-VSIEGEDIYEPDVDVVE- 90
Query: 673 GTIRENI--LFGKD--MRQSFYEEVLEGCALN----QDIEMWADGDL------SVVGER- 717
+R+N+ +F K S Y+ V G ++ +D++ + L +R
Sbjct: 91 --LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRL 148
Query: 718 ---GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
++LSGGQ+QR+ +AR + + +FD+P SA+D T + +M L T++
Sbjct: 149 KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-ISTARIEDLIMNLKKDYTIV 207
Query: 775 YTTHQLE 781
TH ++
Sbjct: 208 IVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---IQTGT 674
M+I + A+ G G GKS+ L L + + ++V G+ + Q+ + +
Sbjct: 28 MEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE-VRVEGRVEFFNQNIYERRVNLNR 85
Query: 675 IRENI--LFGKD--MRQSFYEEVLEGCALN----------------QDIEMWADGDLSVV 714
+R + + K S Y+ V G + +D ++W D +
Sbjct: 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLW-DEIKHKI 144
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQCLMGLLSQK 771
+ ++LSGGQ+QR+ +ARA+ V + D+P +D L + + L S+
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS--LRLRSEL 202
Query: 772 TVLYTTHQL 780
T++ +H L
Sbjct: 203 TMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
AY P+++ I I E I+ E+ L+ AL +++ DL G L
Sbjct: 184 AYGPRNNGINDRKILEKIV----------EKSLKSAALWDEVK----DDLDKAGNA---L 226
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL- 780
SGGQ+QR+ +ARA+ +V + D+P SA+D T ++ ++ L + +++ TH +
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDP-IATAKIEELILELKKKYSIIIVTHSMA 285
Query: 781 EFLDAADLVLVMKDGKIEQSGK 802
+ +D + G IE++G+
Sbjct: 286 QAQRISDETVFFYQGWIEEAGE 307
|
Length = 329 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-05
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-AYVP---------- 665
+ I KG A+ G+ G GKS+LL + G E P + I + G ++VP
Sbjct: 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 666 QS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
QS + T+ +NI FG K + V E L + M +
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL---VHM-----QEFAKRKPHQ 149
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTH 778
LSGGQ+QR+ LAR++ + + D+P A+D + + + L + V+ T
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
Q E + A + +M GK Q G+ E++ +
Sbjct: 210 QEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
|
Length = 377 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 7e-05
Identities = 63/290 (21%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 529 SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASD 588
S VL+ L ++ P+ L + ++AQ +++ R+ +F + N+ +P E S A +
Sbjct: 271 SAFVLALL----YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE-LSDADN 325
Query: 589 VAIDIEAGEYAWDA---REENFKKPTIKLTD-------KMKIMKGSKVAVCGSVGSGKSS 638
V + A + + D+ ++ + + ++ ++I +G V + G G GKS+
Sbjct: 326 VLL--LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKST 383
Query: 639 LLSSILG-EIPR-----ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY-- 690
L G IP+ + GAA+ + Y S I + L G D +
Sbjct: 384 LAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443
Query: 691 --EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
++ L+ + +++ DG S LS GQ++R+ L A + + +FD+
Sbjct: 444 NAQQYLQRLEIADKVKI-EDGGFSTT----TALSTGQQKRLALICAWLEDRPILLFDEWA 498
Query: 749 SAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAADLVLVMKDGKI 797
+ D +++ L L Q KT++ +H ++ + AD ++ + G I
Sbjct: 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 43/176 (24%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
I + + + P LK + T +PGE ++G G+GKSTL++ L + EP+ G I
Sbjct: 6 ISMAGIGKSFGPV--HALKSVNLTVYPGEIHA-LLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1279 LIDGVDISMIGLQD-LRSRLSIIPQD-PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
I+ ++ + + + + + II Q+ ++ + TV NL + +H +++ V N
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGV-NIIDWR 120
Query: 1337 EIVRQDQRLLD-----APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
E+ + +L + E N S+ +Q++ +A+ L+ +++++DE T+S+
Sbjct: 121 EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 58/236 (24%)
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---------R 1294
+PGE +G+VG +GSGK+TL+ AL + P G + D + L L R
Sbjct: 30 YPGEV-LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 1295 SRLSIIPQDPM----------------LFQ------GTVR-TNLDPLEQHSDQEIWEVIN 1331
+ + Q P L G +R T D LE+
Sbjct: 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLER----------- 137
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTAT 1391
EI R+ D P +S G +Q + +AR L+ R++ +DE T +D +
Sbjct: 138 ----VEI--DAARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 1392 DNVIQQTIREETSR--CTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLED 1444
+ +R V+ V H + + +LV+ +G+V+E Q+L+D
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGGQ+QR+ +ARA+ V +FD+P +A+D + ++ L++ T + TH
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--IIRELAETGITQVIVTH 199
Query: 779 QLEFL-DAADLVLVMKDGKIEQSG 801
++E A V+ M++G I + G
Sbjct: 200 EVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I KG A+ G G+GKS+L ++ G + SG I GK + ++ +RE
Sbjct: 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMK---LRE 82
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALN-----QDIEMWADGDLSVVGERGIN------ 720
++ +F Q F Y++V G A+N ++ D L G +
Sbjct: 83 SVGMVFQDPDNQLFSASVYQDVSFG-AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LS GQK+R+ +A + V + D+P + +D G + L+ + + T++ TH
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMKLLVEMQKELGLTIIIATH 200
Query: 779 QLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
++ + D V VMK+G++ G +++ A++ E++R
Sbjct: 201 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EMLR 237
|
Length = 283 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISG---AAIKVHGKKAY----- 663
+ I +G V + G G GKS+L +LG E P G + ++A+
Sbjct: 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ 91
Query: 664 -VPQ---SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL--SVVGER 717
V Q S+ T+R+ I G+ +R + E + E+ L +
Sbjct: 92 LVFQDSPSAVNPRMTVRQII--GEPLRH--LTSLDESEQKARIAELLDMVGLRSEDADKL 147
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVL 774
LSGGQ QRI +ARA+ + + D+ S +D + + L+ L Q L
Sbjct: 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE--LLRKLQQAFGTAYL 205
Query: 775 YTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDL 806
+ TH L + + V VM G+I E+ + L
Sbjct: 206 FITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
L+ GQKQR+ LARA+ V I D+ +++D + L LM L +K + +Y T
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 778 HQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
L + +D VLVM G++ + G D++A EL +++ A
Sbjct: 208 QHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIA 251
|
Length = 267 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT---VLYTT 777
LSGG +QR+ +A A+ V I D+P +A+D + + L+ +L ++ V++ T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H + + + AD VLVM G+ ++G E +
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 46/232 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ + +G A+ G GSGKS+L +I+G ++ I G+ I +
Sbjct: 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED--------ILELSPD 76
Query: 677 ENILFG----------------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG----- 715
E G D ++ + + ++G
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 716 -ERGIN--LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
ER +N SGG+K+R ++ + + + I D+P S +D + + + L +
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGR 195
Query: 773 -VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
VL TH LD D V V+ DG+I +SG + EL +++
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG---------DPELAEELEEK 238
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-04
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 70/232 (30%)
Query: 557 AQTKVSLYRIQEFIKEDNQKKPITE-----PTSKASDVAIDIEAGEYAWDAR----EENF 607
A++K L R +E + ++ QK+ T P + D I+ E + + + +F
Sbjct: 284 AKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSF 343
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---KKAYV 664
K P G V V G G+GKS+L I G+ SG IK+ G K AYV
Sbjct: 344 KLP-----------PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT-IKI-GETVKLAYV 390
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN---- 720
QS R+ + D ++ +EE+ G D+ +G+R +
Sbjct: 391 DQS--------RDAL----DPNKTVWEEISGG------------LDIIQLGKREVPSRAY 426
Query: 721 -----------------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
LSGG++ R+ LA+ + S +V + D+P + +D T
Sbjct: 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 49/188 (26%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWI--QTG---- 673
V + G G+GK+SLL + G +G + G+ Y ++ Q G
Sbjct: 30 VQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTE 88
Query: 674 -TIRENILFGKDMRQSFYEEVLEGCALNQDI---EMWADGDLSVVGERGI------NLSG 723
T EN+ FY L+ +W L+ VG G LS
Sbjct: 89 LTALENL--------RFY------QRLHGPGDDEALWEA--LAQVGLAGFEDVPVRQLSA 132
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTTH 778
GQ++R+ LAR + + ++I D+PF+A+D G L LL+Q V+ TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQ-GV----ARLEALLAQHAEQGGMVILTTH 187
Query: 779 QLEFLDAA 786
Q + +
Sbjct: 188 QDLPVASD 195
|
Length = 204 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT----GTHLFKQCLMGLLSQKTVLYTT 777
SGG + RI LARA++ D+ + D+P + +D H T+L K KT + +
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-------PKTFIVVS 398
Query: 778 HQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKS 824
H EFL+ D++ + + G Y+ + +L Q KA +
Sbjct: 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESN 447
|
Length = 718 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 42/194 (21%)
Query: 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ 671
+ L K G VAV G G+GK++LL ILG A K G++ Y P S ++
Sbjct: 402 LNLEIKP----GDVVAVVGQSGAGKTTLLRMILG--------AQKGRGEEKYRPDSGKVE 449
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GD----LSVVGERGIN----- 720
+ L + F E + +E GD + ++ G++
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTI--------LEHLRSKTGDLNAAVEILNRAGLSDAVLY 501
Query: 721 ------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
LS GQK+R +LA+ + +V + D+ + +D T + ++ + L+++
Sbjct: 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGI 559
Query: 772 TVLYTTHQLEFLDA 785
T++ TH+ E +A
Sbjct: 560 TLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA----AIKVHGKKAYVPQSSWIQTGTI 675
I G V + G GSGKS+L+ + G + SG + + KK ++ I
Sbjct: 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK--------VKLSDI 81
Query: 676 REN--ILFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG--------ER 717
R+ ++F Q F E + + A ++IE +++VG +
Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVL 774
LSGGQK+R+ +A V + I D+P + +D + + + L ++ T++
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK--IKELHKEYNMTII 199
Query: 775 YTTHQLEFLDAA---DLVLVMKDGKIEQSGKYED------------LIADQNSELVRQMK 819
+H +E D A D ++VM GK E G + L Q + LVR+++
Sbjct: 200 LVSHSME--DVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQVTYLVRKLR 257
|
Length = 287 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSL---LSSILGEIPRISGAA 654
Y +++ EE+ +K + + +++ KG + + G GSGKS++ ++++L IP S
Sbjct: 12 YKYESNEESTEKLALDDVN-LEVKKGEFLVILGRNGSGKSTIAKHMNALL--IP--SEGK 66
Query: 655 IKVHGKKAYVPQSSWIQTGTIREN--ILFGKDMRQSFYEEVLEGCALN--------QDIE 704
+ V G ++ W IR ++F Q V E A ++I
Sbjct: 67 VYVDGLDTSDEENLW----DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 705 MWADGDLSVVGERGIN------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
D L VG LSGGQKQR+ +A + + IFD+P + +D +G
Sbjct: 123 ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGRR 181
Query: 759 LFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+ L + T++ TH +E AD ++VM GK+ G
Sbjct: 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M + S A+ G G GKS++L SI L R++G I + Y +
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK-ILLDDTDIY---DRGVDP 80
Query: 673 GTIRENI--LFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSV------------VG 715
+IR + +F K S Y+ V+ G LN + ++ D V V
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR-SEADEIVESSLKRVALWDEVK 139
Query: 716 ER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+R + LSGGQ+QR+ +AR + +V + D+P SA+D T ++ + L +
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP-ISTLKIEELIEELKEKY 198
Query: 772 TVLYTTHQLE 781
T++ TH ++
Sbjct: 199 TIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQD 1303
GE +G+ G G+G++ L + L+ + GGRI+++G +I+ + L L +P+D
Sbjct: 288 AGEI-LGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346
Query: 1304 PM---LF-QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL-------DAPVAE 1352
L+ + N+ L H+ + W I ++ + +R L +
Sbjct: 347 RQSSGLYLDAPLAWNVCAL-THNRRGFW--IKPARENAVLERYRRALNIKFNHAEQAA-- 401
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400
S G +Q V +A+ L ++L++DE T +D + N I Q IR
Sbjct: 402 --RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG +Q+ LA+ + +N V I D+P VD ++K L+ L+Q+ ++ ++
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK--LINQLAQEGVAIIVVSS 461
Query: 778 HQLEFLDAADLVLVMKDGKIEQS 800
E L +D VLV+ +GK++
Sbjct: 462 ELAEVLGLSDRVLVIGEGKLKGD 484
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIREN 678
I + + + G G GK++ + + G + G +Y PQ GT+R+
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD- 80
Query: 679 ILFGKDMR---QSFYE-EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
+L +++ E+ + + Q ++ LSGG+ QR+ +A
Sbjct: 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAAC 129
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG--------LLSQKTVLYTTHQLEFLD-A 785
+ ++D+Y+ D+P + +D +Q LM ++KT H + +D
Sbjct: 130 LSKDADIYLLDEPSAYLDV-------EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182
Query: 786 ADLVLVMKDGK 796
AD ++V +G+
Sbjct: 183 ADRLIVF-EGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 42/210 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-------------RISGAAIKVHGKK-- 661
+ + G VA+ G G GKS+L ++G E P +++ A K +
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQ 92
Query: 662 --------AYVPQSS--WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
A P+ + I +R + K R + E+L L D
Sbjct: 93 MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL----------DD 142
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
SV+ +R LSGGQ QR+ LARA+ + I D+ S +D + + L+ L Q+
Sbjct: 143 SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR--LLKKLQQQ 200
Query: 772 T---VLYTTHQLEFLDA-ADLVLVMKDGKI 797
L+ TH L ++ V+VM +G+I
Sbjct: 201 FGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 48/212 (22%)
Query: 1253 VGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP------ML 1306
VG +G GKSTL++ + + + + G + I R++ +P P M+
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGE------------KRMNDVP--PAERGVGMV 80
Query: 1307 FQG-------TVRTNLD---PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356
FQ +V N+ L +EI + +N +AE+++ L P A G
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVN--QVAEVLQLAHLLDRKPKALSG-- 136
Query: 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR------CTVIT 1410
GQRQ V + R L+ + + +LDE +++D A ++ +R E SR T+I
Sbjct: 137 ---GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEISRLHKRLGRTMIY 189
Query: 1411 VAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1441
V H ++ + D ++VLD G+V + P +L
Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIRE 677
+I G + + G G GK++ + + G I G+ + K +Y PQ S GT+ +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--KVSYKPQYISPDYDGTVED 420
Query: 678 ---NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
+ + F E+++ L +E D LSGG+ QR+ +A A
Sbjct: 421 LLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVD-----------ELSGGELQRVAIAAA 469
Query: 735 VYSNSDVYIFDDPFSAVD 752
+ +D+Y+ D+P + +D
Sbjct: 470 LSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 672 TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----GI 719
T +IR+N++ G K E+ L G L W + V +R G
Sbjct: 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL------WNE-----VKDRLDKPGG 147
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGGQ+QR+ +ARA+ DV + D+P SA+D T + + L T++ TH
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-ISTLAIEDLINELKQDYTIVIVTHN 206
Query: 780 LE 781
++
Sbjct: 207 MQ 208
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 32/215 (14%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-------------HGKKAYVPQSSW 669
G + + G GSGKS+LL + G + G A + ++ + ++ W
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCA---------LNQDIEMW---ADGDLSVVGER 717
G + +N G MR S + E + + W + D + + +
Sbjct: 89 ---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDL 145
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLY 775
SGG +QR+Q+AR + + + D+P +D L L GL+ V+
Sbjct: 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVII 204
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809
TH L A +LVM+ G++ +SG + ++ D
Sbjct: 205 VTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 21/210 (10%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLSIIPQD 1303
GE + +VG G+GKSTL+ + ++ P G I G + +L R R + Q
Sbjct: 21 AGEI-LHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78
Query: 1304 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVR--QDQRLLDAPVAEDGENWSVGQ 1361
F V L L Q V L E+ L V S G+
Sbjct: 79 TPPFAMPVFQYLT-LHQPDKTRTEAV--ASALNEVAEALGLDDKLGRSV----NQLSGGE 131
Query: 1362 RQLVCLARVLLK-------KKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAH 1413
Q V LA V+L+ ++L+LDE S+D A + + + E + V+ +H
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191
Query: 1414 RIPTVIDN-DLVLVLDEGKVLEYDSPRQLL 1442
+ + + D V +L +GK+L ++L
Sbjct: 192 DLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 41/224 (18%)
Query: 1237 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1283
LKGI FPG K + +VG G+GKST+++ L + G IL G
Sbjct: 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGK 66
Query: 1284 DISMIGLQDLR-SRLSIIPQDPMLF-QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1341
+++ G + + + + II Q+ L Q T+ N+ +E + ++ +
Sbjct: 67 EVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENI-----FLGREFVNRFGRIDWKKMYAE 121
Query: 1342 DQRLL---------DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT-ASIDTAT 1391
+LL D V E S+G++Q+V +A+VL + +++++DE T A DT T
Sbjct: 122 ADKLLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177
Query: 1392 D---NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGK 1431
+ VI++ ++ + ++ ++HR+ + + D V V +G+
Sbjct: 178 ESLFRVIRE-LKSQ--GRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 62/261 (23%), Positives = 118/261 (45%), Gaps = 47/261 (18%)
Query: 571 KEDNQKKPITEPTSKASD-VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMK------- 622
E +T+ + +D ++ E+GE + R ++ IK +K I+
Sbjct: 730 GEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVK-IK-KEKRVILNNVDGWVK 787
Query: 623 -GSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKK---------AYVPQSSW- 669
G+ A+ G+ G+GK++LL+ + + I+G V+G+ YV Q
Sbjct: 788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLH 847
Query: 670 IQTGTIRENILFGKDMRQS----------FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ T T+RE++ F +RQ + EEV++ + E +AD +VVG G
Sbjct: 848 LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM----ESYAD---AVVGVPGE 900
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIF-DDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYT 776
L+ Q++R+ + + + + +F D+P S +D+ T + LM L+ + +L T
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC--KLMRKLADHGQAILCT 958
Query: 777 THQ--LEFLDAADLVLVMKDG 795
HQ + D +L+++ G
Sbjct: 959 IHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MG 766
DG V + I+LSGG+ QR+ +A A+ N+ Y+FD+P + +D + + +
Sbjct: 59 DGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118
Query: 767 LLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803
+KT L H L LD +D + V + + G Y
Sbjct: 119 EEGKKTALVVEHDLAVLDYLSDRIHVFEG----EPGVY 152
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)
Query: 599 AWDAREENFKKPTIKLTDKM--KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656
AWD N P IK D + + +G + + G VG+G++ L+ + G P I
Sbjct: 267 AWDP--VN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF 321
Query: 657 VHGKK--------------AYVP----QSSWIQTGTIRENIL---FGKDMRQSFYEEVLE 695
+ GK A VP + + + +NI + S ++ E
Sbjct: 322 IDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE 381
Query: 696 GCALNQDIEMW----ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751
+ + I+ A +L++ LSGG +Q+ LA+ + N + I D+P +
Sbjct: 382 LKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
Query: 752 DAHTGTHLFKQCLMGLLSQK--TVLYTTHQL-EFLDAADLVLVMKDGKI 797
D ++K L+ L Q+ ++ + +L E L +D VLVM +GK+
Sbjct: 437 DVGAKYEIYK--LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
SGGQ+QRI +ARA+ + DV + D+P SA+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773
+ E G LSGGQ+QR+ +ARA+ + +V + D+P SA+D T ++ + L T+
Sbjct: 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP-IATAKVEELIDELRQNYTI 215
Query: 774 LYTTHQLE 781
+ TH ++
Sbjct: 216 VIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 60/266 (22%)
Query: 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--YVP 665
P +K + + G +A+ G G+GKS+++ + G R +G+ I GK+ P
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEVTFNGP 73
Query: 666 QSS-------------WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD-- 710
+SS I TI ENI G++ F G + +M+A+ D
Sbjct: 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF------GRIDWK--KMYAEADKL 125
Query: 711 ---LSV-------VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH-- 758
L++ VGE LS G++Q +++A+ + S V I D+P DA T T
Sbjct: 126 LARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEP---TDALTDTETE 178
Query: 759 -LFKQCLMGLLSQKT-VLYTTHQL-EFLDAADLVLVMKDGK-IEQSGKYEDLIADQNSEL 814
LF+ + L SQ ++Y +H+L E + D V V +DG+ I + +AD +
Sbjct: 179 SLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE-----VADLTEDS 232
Query: 815 VRQMKAHRKSLDQ---VNPPQEDKCL 837
+ +M RK DQ ++ + L
Sbjct: 233 LIEMMVGRKLEDQYPRLDKAPGEVRL 258
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 32/207 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP-------------QSSW 669
G + + G GSGK++LL I G + +G ++ W
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGC------------ALNQDIEMWADGDLSVVGER 717
G + +N G M+ S + E A QD + DL + +
Sbjct: 92 ---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDL 148
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLY 775
SGG +QR+Q+AR + + + D+P +D L L GL+ V+
Sbjct: 149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVI 207
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSG 801
TH L AD ++VMK G++ +SG
Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 48/213 (22%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI-LIDGVDISMIGLQDLRSRLSIIPQD 1303
PG + IG++GR G+GKSTLI+ L + P G I L G+ +L Q
Sbjct: 337 PGSR-IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI------------KLGYFAQH 383
Query: 1304 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ--DQRLLD---------APVAE 1352
+ F +R + PL+ HLA + Q +Q+L D V E
Sbjct: 384 QLEF---LRADESPLQ--------------HLARLAPQELEQKLRDYLGGFGFQGDKVTE 426
Query: 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT-IREETSRCTVITV 1411
+ +S G++ + LA ++ ++ +L+LDE T +D + + I E + V
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHD 486
Query: 1412 AHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
H + + D DL LV D GKV +D LED
Sbjct: 487 RHLLRSTTD-DLYLVHD-GKVEPFDGD---LED 514
|
Length = 638 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSS---------ILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
G A+ G G+GK++L+ I G+I RISG K ++ + S + +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFPKK---QETFARISGYCEQN 961
Query: 674 -------TIRENILF----------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
T+RE++++ K+ + F +EV+E L+ + ++VG
Sbjct: 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-------AIVGL 1014
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
G+ LS Q++R+ +A + +N + D+P S +DA + + + + +TV+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074
Query: 776 TTHQ--LEFLDAADLVLVMKDG 795
T HQ ++ +A D +L+MK G
Sbjct: 1075 TIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCS 991
V L GGS + + R L R+ ++ S+ R + FFD + + +R S
Sbjct: 216 VSAGLRGGSFNYTMARINL----------RIREDLFRSLLRQDLGFFDENKTGELTSRLS 265
Query: 992 TDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQ--------VFPLFLVILGISIWY 1043
+D T+ + + L L+ LL ++ M + + + +FL Y
Sbjct: 266 SDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325
Query: 1044 QVV 1046
Q++
Sbjct: 326 QLL 328
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--S 769
++VG LSGGQKQRI +ARA+ N + I D+ S++D + +L ++ + L
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGNE 629
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKD 794
+ + H+L + A+ + V+ +
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 55/218 (25%)
Query: 628 VCGSVG---SGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQ 671
V G +G SGKS+LL +LG S I + K AY+PQ
Sbjct: 39 VTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAA 97
Query: 672 TG-TIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-L 721
G T+RE + G+ + E+V E +L L + R ++ L
Sbjct: 98 EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSL 148
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
SGG++QR +A V +S + D+P SA+D AH Q VL H+L
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---------------QVDVLALVHRL 193
Query: 781 EFLDAADLVLVMKDGKIEQSGKYED-LIADQNSELVRQ 817
++ V+ D I + +Y D L+A + E++ Q
Sbjct: 194 SQERGLTVIAVLHD--INMAARYCDYLVALRGGEMIAQ 229
|
Length = 265 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 674 TIRENILFG---------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+I +NI FG +M + E L AL +++ + + G +LSGG
Sbjct: 109 SIYDNIAFGVRLFEKLSRAEMDERV-EWALTKAALWNEVK-------DKLHQSGYSLSGG 160
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
Q+QR+ +AR + +V + D+P SA+D T ++ + L TV+ TH ++
Sbjct: 161 QQQRLCIARGIAIRPEVLLLDEPCSALDP-ISTGRIEELITELKQDYTVVIVTHNMQ 216
|
Length = 260 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG 682
G + + G G+GKS+LL+ + G +I+ G+ P +W T R
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQ----PLEAWSATELARHRAYLS 78
Query: 683 KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE---------RGIN-LSGGQKQRIQLA 732
+ F V L+Q + L+ V R N LSGG+ QR++LA
Sbjct: 79 QQQTPPFAMPVWHYLTLHQPDKTRT-ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
Query: 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFK----QCLMGLLSQKTVLYTTHQLE 781
V + + D+P +++D + L + C GL ++ ++H L
Sbjct: 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL----AIVMSSHDLN 193
Query: 782 F-LDAADLVLVMKDGKIEQSGKYEDLI 807
L A ++K GK+ SG+ E+++
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRLSIIPQDPMLF- 1307
+ ++G G+GK+TL+ L + GRI+ DG DI+ + +R ++I+P+ +F
Sbjct: 34 VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93
Query: 1308 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367
+ TV NL ++++ ++ + + RL + + G S G++Q++ +
Sbjct: 94 RMTVEENLAMGGFFAERDQFQE----RIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAI 148
Query: 1368 ARVLLKKKRILVLDEATASIDTATDNVIQ-----QTIREETSRCTVITVAHRIPTVIDND 1422
R L+ + R+L+LDE S+ A + Q + +RE+ T+ V N
Sbjct: 149 GRALMSQPRLLLLDE--PSLGLAPIIIQQIFDTIEQLREQG--MTIFLVEQNA-----NQ 199
Query: 1423 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458
+ + D G VLE + +LED + L E +R
Sbjct: 200 ALKLADRGYVLE--NGHVVLEDTGDAL--LANEAVR 231
|
Length = 237 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ + +G+ A+ G G GK++ L +I L R++G I + G+ Y P+ +
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDPVAM 83
Query: 672 ---------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWAD 708
T ++ +N++ G +D E L G AL +++
Sbjct: 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---- 139
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ LSGGQ+QR+ +ARA+ ++ + D+P SA+D + + + LM L
Sbjct: 140 ---DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTDL 194
Query: 769 SQ-KTVLYTTHQL 780
+ T++ TH +
Sbjct: 195 KKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 24/200 (12%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQDPMLFQ 1308
+G+ G G+G+S L++ L+ + G++ +DG I + +D +R+ + + P+D +
Sbjct: 282 VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRK-AE 340
Query: 1309 G-----TVRTNLD--PLEQHSD-----QEIWEVINKCHLAEIVRQDQRL-LDAPVAE-DG 1354
G +V N++ H WE N A+ R + L + P E
Sbjct: 341 GIIPVHSVADNINISARRHHLRAGCLINNRWEAEN----AD--RFIRSLNIKTPSREQLI 394
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAH 1413
N S G +Q L R L + ++++LDE T ID + I I E ++ V+ V+
Sbjct: 395 MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454
Query: 1414 RIPTVID-NDLVLVLDEGKV 1432
+P V+ D ++V+ EG++
Sbjct: 455 DLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLE----GCALNQDIEMWADGD 710
++ K YV + G + E L K + ++EV+E L++D+
Sbjct: 161 LRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLDRDVS------ 212
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
LSGG+ QR+ +A A+ ++DVY FD+P S +D + +
Sbjct: 213 ---------ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDG 263
Query: 771 KTVLYTTHQLEFLDA-ADLVLVM 792
K V+ H L LD +D V ++
Sbjct: 264 KYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 48/240 (20%)
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI---LIDGVDISMIGLQD------LR 1294
+PGE +G+VG +GSGK+TL++ + + P G + + DG + + + LR
Sbjct: 30 YPGEV-LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88
Query: 1295 SRLSIIPQDPMLFQGTVRTNLDPLEQH--SDQEIWE---VINKCHLAEIVRQDQRLL--- 1346
+ + Q+P D L + I E I H I + Q L
Sbjct: 89 TEWGFVHQNP----------RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138
Query: 1347 --------DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD----NV 1394
D P +S G +Q + +AR L+ + R++ +DE T +D + ++
Sbjct: 139 EIDLDRIDDLPRT-----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 193
Query: 1395 IQQTIREETSRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
++ +RE V+ V H + + D ++V+ +G+V+E ++L+D +++L+
Sbjct: 194 LRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----S 1274
+IEL N+ +Q P+V G++ T + + +VG +GSGKS A ++ +
Sbjct: 4 QIELRNIALQ--AAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1275 GGRILIDGVDISMIGLQDLRSRL-SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKC 1333
GR+L+DG ++ LR R + I Q+P R+ +PL C
Sbjct: 61 AGRVLLDGKPVA---PCALRGRKIATIMQNP-------RSAFNPLHTMHTH----ARETC 106
Query: 1334 HLAEIVRQDQRLLDAPVAEDGEN-----------WSVG--QRQLVCLARVLLKKKRILVL 1380
D L A A EN S G QR ++ LA LL + ++
Sbjct: 107 LALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALA--LLCEAPFIIA 164
Query: 1381 DEATASIDTATDNVIQQTIRE------ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1433
DE T T D V Q I + + ++ V H + V D V V+ G+++
Sbjct: 165 DEPT----TDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220
Query: 1434 E 1434
E
Sbjct: 221 E 221
|
Length = 254 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 44/230 (19%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQA----LFRVVEPSG----GRILIDGVDISMIGLQDLRSR 1296
PG ++GR G+GKSTL++A L P G G + ++G ++ I L
Sbjct: 26 PGRV-TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARL 84
Query: 1297 LSIIPQD-----PMLFQGTVRTNLDP------LEQHSDQEI-WEVINKCHLAEIVRQDQR 1344
+++PQ + V P H D EI W+ + +V +D
Sbjct: 85 RAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT 144
Query: 1345 LLDAPVAEDGENWSVGQRQLVCLARVLLK---------KKRILVLDEATASIDTATDNVI 1395
L S G+ V ARVL + R L+LDE TA++D A + +
Sbjct: 145 TL-----------SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRL 193
Query: 1396 QQTIREETS--RCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLL 1442
T+R V+ + H + D + +L +G ++ + +P +L
Sbjct: 194 LDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 721 LSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776
LSGG+K+ LA + +YI D+ +D G L + L L+ V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 777 THQLEFLDAADLVLVMK 793
TH E + AD ++ +K
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHGKKAYVPQSSWIQTGTIR 676
I KG V + G G GKS+LLS ++G + +G + ++ ++ + ++ Q G
Sbjct: 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIG--- 80
Query: 677 ENILFGKDM---RQSFYEEVLEGCALNQDIE-----MWADGDLSVVGERGI------NLS 722
ILF + S + +L AL ++ A+ L G G LS
Sbjct: 81 --ILFQDALLFPHLSVGQNLL--FALPATLKGNARRNAANAALERSGLDGAFHQDPATLS 136
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTT 777
GGQ+ R+ L RA+ + + D+PFS +D L Q + S+ + T
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDV----ALRDQFRQWVFSEVRAAGIPTVQVT 192
Query: 778 HQLEFLDAADLVLVMKDGKIEQS 800
H L+ + A V+ M + EQ+
Sbjct: 193 HDLQDVPAGSRVIEM--AQWEQN 213
|
Length = 213 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V + G+ G+GK++LL ++ G+ PR + I GK + W +RE
Sbjct: 26 LHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDI----TDWQTAKIMRE 80
Query: 678 NILFGKDMRQSF----YEEVLEGCALNQDIEMWADGDLSVVG----------ERGINLSG 723
+ + R+ F EE L + + + + V +R +SG
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSG 140
Query: 724 GQKQRIQLARAVYSNSDVYIFDDP 747
G++Q + + RA+ S + + D+P
Sbjct: 141 GEQQMLAIGRALMSQPRLLLLDEP 164
|
Length = 237 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 28/146 (19%)
Query: 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1311
+VG+ G+GK+T+I+AL ++ G S+ ++ +G V
Sbjct: 27 IVGQNGAGKTTIIEALK----------------YALTGELPPNSKGGAHDPK-LIREGEV 69
Query: 1312 RTNLDPLEQHSDQEIWEVINKCHLAE---IVRQDQRLLDAPVAEDGENWSVGQRQLVC-- 1366
R + ++++ + + + + E Q + + P+ + S G++ L
Sbjct: 70 RAQVKLAFENANGKKYTITRSLAILENVIFCHQGE--SNWPLLDMRGRCSGGEKVLASLI 127
Query: 1367 ----LARVLLKKKRILVLDEATASID 1388
LA IL LDE T ++D
Sbjct: 128 IRLALAETFGSNCGILALDEPTTNLD 153
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 45/209 (21%), Positives = 96/209 (45%), Gaps = 23/209 (11%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
+ I+ P + G++G G+GK+T + + ++EP+ G I +G +S Q++++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355
R+ +P++ L+ + +Q + + AEI ++ Q L+ E
Sbjct: 73 RIGYLPEERGLYP-----KMTVEDQ---LKYLAELKGMPKAEIQKKLQAWLER--LEIVG 122
Query: 1356 N-------WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CT 1407
S G +Q + ++ + +L+LDE + +D +++ I E T
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 1408 VITVAHRIPTVID-NDLVLVLDEGKVLEY 1435
+I +HR+ V + D +L+L +G+ + Y
Sbjct: 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI--LGEI---PRISGAAIKVHGKKAY--------- 663
++I + A+ G GSGKS+LL L E+ R+SG + G+ +
Sbjct: 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY-LDGQDIFKMDVIELRR 82
Query: 664 -------VPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGD 710
+P I +I EN+ G + ++ E V AL + ++W +
Sbjct: 83 RVQMVFQIPNP--IPNLSIFENVALGLKLNRLVKSKKELQERVRW--AL-EKAQLWDEVK 137
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ G LSGGQ+QR+ +ARA+ +V + D+P + +D T + + L
Sbjct: 138 DRLDAPAG-KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN-TAKIESLFLELKKD 195
Query: 771 KTVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + +D V + G+I + G ++ + EL +
Sbjct: 196 MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEK 243
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 630 GSVGSGKS-------SLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-IQT-----GTIR 676
G G GKS SL+S G + G I + Y Q S+ QT T+
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQRIQLARAV 735
+N++F +R + D+E +A D + + I LSGG+KQRI L R +
Sbjct: 99 DNLIFPWQIRNQQPDPA----IFLDDLERFALPDTIL--TKNIAELSGGEKQRISLIRNL 152
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVM 792
V + D+ SA+D ++ + + + ++ VL+ TH + ++ AD V+ +
Sbjct: 153 QFMPKVLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTH 778
+LSGG+KQR+ LAR + +++ D+P +D T + + + +++ T+H
Sbjct: 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
Query: 779 QLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
E + D +D + +++G+I++ G ++++A
Sbjct: 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI------------LGEIP----RISGAAIKV---- 657
M I K + A+ G G GKS+ L SI GEI I + I V
Sbjct: 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101
Query: 658 ------HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
K P+S + I + + + R+S +E++E +W D
Sbjct: 102 REIGMVFQKPNPFPKSIY---NNITHALKYAGERRKSVLDEIVEESLTKA--ALW-DEVK 155
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ ++LSGGQ+QR+ +AR + V + D+P SA+D + + ++ + L +
Sbjct: 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEY 214
Query: 772 TVLYTTHQLE 781
+++ TH ++
Sbjct: 215 SIIIVTHNMQ 224
|
Length = 268 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGG-----RILIDGVDISMIGLQDL--RSRLSII 1300
+ G +G +G GKST++++L R+ + G + G D+ G+ + R + ++
Sbjct: 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 1301 PQDPMLFQGTVRTN------LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354
Q P F ++ N L+ + + + L + V+ ++ G
Sbjct: 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV-------SG 147
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1414
+ S GQ+Q +C+AR + + +L+LDE +++D +++ + E T+ V H
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Query: 1415 IPTVI 1419
+ I
Sbjct: 208 MQQAI 212
|
Length = 261 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 58/246 (23%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I+L + Y L IT P + + ++G +G+GKS+L++ L + P G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1280 IDG--------VDISMIGLQDLRSRLSIIPQDPMLFQG-------TVRTNL--DPL---- 1318
I G I ++LR + M+FQ TV+ NL P
Sbjct: 61 IAGNHFDFSKTPSDKAI--RELRRNVG------MVFQQYNLWPHLTVQQNLIEAPCRVLG 112
Query: 1319 --EQHSDQEIWEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
+ + +++ + L R L S GQ+Q V +AR L+ +
Sbjct: 113 LSKDQALARAEKLLERLRLKPYADRFPLHL------------SGGQQQRVAIARALMMEP 160
Query: 1376 RILVLDEATASIDTATDNVIQQTIRE--ETSRCTVIT-----VAHRIPTVIDNDLVLVLD 1428
++L+ DE TA++D I IRE ET VI VA + + V+ ++
Sbjct: 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS-----RVVYME 215
Query: 1429 EGKVLE 1434
G ++E
Sbjct: 216 NGHIVE 221
|
Length = 242 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 43/220 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQSS------WIQTG 673
KG + V G +G+G++ L+ + G +PR SG + + G PQ +I
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGY-VTLDGHEVVTRSPQDGLANGIVYISED 335
Query: 674 TIRENILFGKDMRQSFYEEVLE-----GCALNQDIEMWADGDL------------SVVGE 716
R+ ++ G ++++ L G +L E A D +G
Sbjct: 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG- 394
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL------FKQCLMGLLSQ 770
LSGG +Q++ +AR + + V I D+P VD + FK + +
Sbjct: 395 ---LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSI--- 448
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+L ++ E L +D +LVM +G+I SG++ A Q
Sbjct: 449 --ILVSSEMPEVLGMSDRILVMHEGRI--SGEFTREQATQ 484
|
Length = 501 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 50/249 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-GKK---AYVPQSSWIQTGTI 675
+ +G K+A+ G G GK++LL +LG++ SG ++H G K AY Q
Sbjct: 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG---RIHCGTKLEVAYFDQH-------- 390
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVG---------ERGIN----L 721
R + D ++ + + EG Q++ + +G V+G +R + L
Sbjct: 391 RAEL----DPEKTVMDNLAEG---KQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKAL 441
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ 779
SGG++ R+ LAR S++ I D+P + +D T + L LL Q TVL +H
Sbjct: 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-----LELLEELLDSYQGTVLLVSHD 496
Query: 780 LEFLD--AADLVLVMKDGKIEQ-SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKC 836
+F+D + + +GKI + G Y D A Q +K + + +
Sbjct: 497 RQFVDNTVTECWIFEGNGKIGRYVGGYHD--ARQQQAQYLALKQPAVKKKEEAAAPKAET 554
Query: 837 LSRVPCQMS 845
+ R ++S
Sbjct: 555 VKRSSKKLS 563
|
Length = 635 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG QR+ +A A+ + I D+P +A+D + + L+ L QK ++ T
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE--LLLELQQKENMALVLIT 211
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H L + +AA ++VM G++ ++GK D+
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL------FKQCL-MGLLSQKTV 773
LSGG++QR+ +A A+ + ++ I D+P +A+D + +Q L MGL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL------ 210
Query: 774 LYTTHQLEFL-DAADLVLVMKDGK-IEQS 800
L+ TH L + AD V VM++G+ +EQ+
Sbjct: 211 LFITHNLSIVRKLADRVAVMQNGRCVEQN 239
|
Length = 529 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI-----QTGTIREN--ILFG 682
G G+GKS+LL I G I R S I G ++ + Q G I ++ +L
Sbjct: 35 GHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL-- 91
Query: 683 KDMRQSFYEEV----LEGCALNQDIEMWADGDLSVVG------ERGINLSGGQKQRIQLA 732
M ++ Y+ V + A DI L VG I LSGG++QR+ +A
Sbjct: 92 --MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA 149
Query: 733 RAVYSNSDVYIFDDPFSAVD 752
RAV + V + D+P +D
Sbjct: 150 RAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQDP---- 1304
+GV G G+G++ L++ L+ + + G + +DG ++ QD L + + I +D
Sbjct: 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDG 340
Query: 1305 MLFQGTVRTN--LDPLEQHSDQEIWEVINKCHLAEIVRQDQ--RL-------LDAPVAED 1353
++ +V+ N L L S + H E RL ++ +
Sbjct: 341 LVLGMSVKENMSLTALRYFSRA--GGSLK--HADEQQAVSDFIRLFNIKTPSMEQAIG-- 394
Query: 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTVITVA 1412
S G +Q V +AR L+ + ++L+LDE T +D I Q I + + ++I V+
Sbjct: 395 --LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452
Query: 1413 HRIPTVID-NDLVLVLDEGKV 1432
+P V+ +D +LV+ EG++
Sbjct: 453 SEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 649 RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708
++ +KV K YV G + E +L KD R +E+++ L
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGE-LLKKKDERGKL-DELVDQLELRH------- 131
Query: 709 GDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
V +R I LSGG+ QR+ +A A+ ++D Y FD+P S +D
Sbjct: 132 -----VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 43/222 (19%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---GLQD 1292
+L G+ + I ++G +GSGKSTL+ L + + S G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1293 LRSR--------LSIIP--------QDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA 1336
LR++ +IP + P L +G + S ++ + L
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGES-------SRQSRNGAKALLEQLGLG 137
Query: 1337 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1396
+ RL P G G++Q V LAR + +L DE T ++D T + I
Sbjct: 138 K------RLDHLPAQLSG-----GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 1397 QTI----REETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLE 1434
+ RE + T+I V H + D L L G++ E
Sbjct: 187 DLLFSLNREHGT--TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 63/261 (24%), Positives = 125/261 (47%), Gaps = 43/261 (16%)
Query: 1222 LENLLVQYNPTLPMV-LKGITCTFPGEKKIG-------------VVGRTGSGKSTLIQAL 1267
+ L Q + P+V L+GI+ +F G++ I ++G +G GK+T+++ +
Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60
Query: 1268 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD---PLEQHSD 1323
P GRI++DG DI+ + + ++ + Q LF TV N+ +++
Sbjct: 61 AGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118
Query: 1324 QEI----WEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378
EI E + L E R+ +L S GQ+Q V +AR ++ K ++L
Sbjct: 119 AEITPRVMEALRMVQLEEFAQRKPHQL------------SGGQQQRVAIARAVVNKPKVL 166
Query: 1379 VLDEATASIDTATDNVIQQTIR--EETSRCTVITVAH-RIPTVIDNDLVLVLDEGKVLEY 1435
+LDE+ +++D +Q ++ + T + V H + + +D ++V+ +G++ +
Sbjct: 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 1436 DSPRQLLEDNSSSFSKLVAEF 1456
+PR++ E+ + F VA F
Sbjct: 227 GTPREIYEEPKNLF---VARF 244
|
Length = 375 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQ 779
LS G++ R+ LA+ + + I D+P +D T + L ++T + +H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 780 LEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
++F LD D +M+DGKI + G E+++ +
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
IKV K YV + G +RE +L D R +EV+E L L +
Sbjct: 160 IKVVHKPQYVDLIPKVFKGKVRE-LLKKVDERGKL-DEVVE--RLG----------LENI 205
Query: 715 GERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL------MGL 767
+R I LSGG+ QR+ +A A+ ++D Y FD+P S +D +Q L L
Sbjct: 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-------IRQRLNVARLIREL 258
Query: 768 LSQKTVLYTTHQLEFLDA-ADLVLVM 792
K VL H L LD AD V +
Sbjct: 259 AEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 35/227 (15%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP----RISG---------AAIKVHGKKAYV---- 664
+G +A+ G GSGKS ++ LG +P + +G A + G+K
Sbjct: 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQN 87
Query: 665 PQSSWIQTGTI----RENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
P+S++ T+ RE L GK + LE L + V+
Sbjct: 88 PRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL--------ENAARVLKLYPF 139
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+SGG QR+ +A A+ + I D+P + +D + L ++ ++ +L T
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVT 198
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM-KAHR 822
H + + AD V VM G+I + G E L + R + AH
Sbjct: 199 HDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSAHL 245
|
Length = 254 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 51/181 (28%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIPQD 1303
E+ + +VGR G+GKSTL++ L V GRI+ + QDL +RL QD
Sbjct: 28 DNER-VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE---------QDLIVARL---QQD 74
Query: 1304 -PMLFQGTV-----------------------RTNLDPLEQHSD-----QEIWEVINKCH 1334
P +GTV DP E++ + QE + N
Sbjct: 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ 134
Query: 1335 LAEIVRQDQRLL----DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L + + L DA ++ W R+ L R L+ +L+LDE T +D
Sbjct: 135 LENRINEVLAQLGLDPDAALSSLSGGW---LRK-AALGRALVSNPDVLLLDEPTNHLDIE 190
Query: 1391 T 1391
T
Sbjct: 191 T 191
|
Length = 635 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 46/204 (22%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------AYVPQS- 667
+A+ G GSGKS+LL+ IL + S + + G+ +V QS
Sbjct: 39 IALIGESGSGKSTLLA-ILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF 97
Query: 668 SWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----G 718
I T EN+ L G+ RQS N + L G+R
Sbjct: 98 MLIPTLNALENVELPALLRGESSRQS----------RNGAKALLEQLGL---GKRLDHLP 144
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLY 775
LSGG++QR+ LARA DV D+P +D TG + L+ L+++ T++
Sbjct: 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD--LLFSLNREHGTTLIL 202
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQ 799
TH L+ D L + +G++++
Sbjct: 203 VTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSIIP--QDPML 1306
IG+VG GSGKSTL + + P+ G++ +G ++S+I + L +L+ I + ML
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISAGLSGQLTGIENIEFKML 111
Query: 1307 FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366
G R + + ++I L E + Q PV + +S G R +
Sbjct: 112 CMGFKRKEIKAMTP-------KIIEFSELGEFIYQ-------PV----KKYSSGMRAKLG 153
Query: 1367 LARVLLKKKRILVLDEATASID-TATDNVIQQTIREETSRCTVITVAHRIPTV 1418
+ + ILV+DEA + D T + + + T+ V+H + V
Sbjct: 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV 206
|
Length = 264 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1470 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-273 Score=2598.24 Aligned_cols=1235 Identities=43% Similarity=0.738 Sum_probs=1152.8
Q ss_pred CCCcccCCH--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHH
Q 000475 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1470)
Q Consensus 201 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (1470)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.++++|++.|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999999999999999999999999854 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1470)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~ 355 (1470)
++++.++++.+.+.+.|++|.+|+.+++|+++++. ..+. ||+++++++++.++++++.|||+|..+++|+|+|+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998743 3444 999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCC---CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000475 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1470)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~ 432 (1470)
+||+|+|++++.++ +.|+|+|+|++|++|+.++..++|.+|.+|+|+++++++||..+| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999999886 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1470)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v 512 (1470)
.+++++++++|++.|+.+|+|++.|+|+|+|||+|||||||++|.++|++.|++|+++++|..|..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 000475 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1470)
Q Consensus 513 ~~~~f~~~~-~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1470)
+++||++|+ ..++.++++++|+++++||+|+.|+.++|..++.+.|++||++|+++||..+| +++...+.+.+..+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 77889999999999999999999999999999999999999999999999998 4444443345556678
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCEeEEEcCCCC
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~ 669 (1470)
|+++|++|+|+++ ++.++|+| ||++++|+++||||++||||||||++|+|||++.+|++ .++|.+|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999975 45669999 99999999999999999999999999999999999997 99999999999999
Q ss_pred CCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCC
Q 000475 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1470)
Q Consensus 670 i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~s 749 (1470)
|+||||||||+||.|||+++|++|+++|+|++|++.+|+||+|+|||||.||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCC
Q 000475 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1470)
Q Consensus 750 aLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 829 (1470)
|||+|+++|||++|+++.+++||||+|||+++++++||+|++|+||+|.+.|+|+|+++ .+..+.++..+ .+.++.+
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~--~~~~~~~ 749 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHE--EESEQEE 749 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhc--cchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999997 77777776322 1111111
Q ss_pred C-CCCCcc--cccCcc-----cccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHH
Q 000475 830 P-PQEDKC--LSRVPC-----QMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQV 901 (1470)
Q Consensus 830 ~-~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~ 901 (1470)
+ ..+... ....+. ......++ +....+.+..++.++|+++.|.|+|++|+.|+++.+|+..+++++++.+
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v 827 (1381)
T KOG0054|consen 750 EASEKDLESGESSRESESRSLESLSSEEE--KSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFV 827 (1381)
T ss_pred ccccccccccccccchhhhhhhhhccccc--ccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 0 000000 000000 00000000 0111122345677889999999999999999999888888888889999
Q ss_pred HHHHHHhhhhHHHHHhccccc--c---ccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000475 902 LFQALQMGSNYWIAWATDEKR--K---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1470)
Q Consensus 902 ~~~~~~~~~~~wl~~~~~~~~--~---~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ 976 (1470)
+.++++++++||+++|++... . .+...|+++|++++++++++.++|++.+...++++|++||++|+++++|+||+
T Consensus 828 ~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~ 907 (1381)
T KOG0054|consen 828 LTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMS 907 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 999999999999999996432 1 35678999999999999999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 000475 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQ 1056 (1470)
Q Consensus 977 ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~ 1056 (1470)
|||+||+|||+||||+|++.+|..+|..+..++..+++++++++++++++|+++++++|+.+++++++
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~------------ 975 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQ------------ 975 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 000475 1057 AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA 1136 (1470)
Q Consensus 1057 ~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~ 1136 (1470)
+||++++||++|+++.+|||+++||+||+.|+.|||||++|++|.+++..++|.+++++|+..+++||+++|+|++++++
T Consensus 976 ~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~ 1055 (1381)
T KOG0054|consen 976 RYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLV 1055 (1381)
T ss_pred HHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCC
Q 000475 1137 FFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS 1216 (1470)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1216 (1470)
+++++++++..+.+..+||.+|++++|+++++..++|++|+.+++|++|+||||+.||+++|+|+|+..+..+||++||+
T Consensus 1056 v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~ 1135 (1381)
T KOG0054|consen 1056 VLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPS 1135 (1381)
T ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCC
Confidence 99999988877766578999999999999999999999999999999999999999999999998887777779999999
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcc
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1296 (1470)
+|+|+|+|+++||+|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||++
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1297 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1297 isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
+++|||||+||+||+|+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++|
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000475 1377 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1456 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~ 1456 (1470)
|||||||||++|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.++
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhcc
Q 000475 1457 LRRTS 1461 (1470)
Q Consensus 1457 ~~~~~ 1461 (1470)
+.++.
T Consensus 1376 ~~~~~ 1380 (1381)
T KOG0054|consen 1376 ALSSR 1380 (1381)
T ss_pred HHhhc
Confidence 86653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-209 Score=2122.44 Aligned_cols=1416 Identities=31% Similarity=0.506 Sum_probs=1173.6
Q ss_pred chhhcchhhhhHHHHHHHHHHHHHHHHHHhhcCCCcchhh--hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q 000475 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFK 84 (1470)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1470)
+...-.|.++.++..+++++++...+....+.....++.. ...+....+.++|+....+++...+..........+ +
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTS-L 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc-c
Confidence 3344467677777777777666665554422111111101 122234555666666666666444333211111112 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhc-----cccccchHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Q 000475 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1470)
...+...+..+++..+++.+.+.++ +..++++.+++||++. +++.+ . ........... ....+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~~ 181 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNL-V---LSVKEYYSSFV--LYLYISEV 181 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHH-H---HHHHHHHhccc--cceehhHH
Confidence 3344443555666666522111122 1456799999999998 65544 2 11222222210 01122222
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCCCCCC------ccccccccccCCCCcccCCHhHHHHHHhHHHHHHhhccCCC
Q 000475 157 DFVSLPLLVLLCFNATYACCCARDPSDLDIPLL------REEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKL 230 (1470)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L 230 (1470)
.+.+.+.+..+. .+.|..+. ..+.|.. .+.++.+.+.+++||++||+|||++|||+||++++||+++|
T Consensus 182 ~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L 255 (1622)
T PLN03130 182 AAQVLFGILLLV----YFPNLDPY--PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPL 255 (1622)
T ss_pred HHHHHHHHHHHH----HHhcCCCC--cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 222221111100 01122221 0111100 01111233467899999999999999999999999999999
Q ss_pred CCCCCCCCCcCCcHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000475 231 ELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH 309 (1470)
Q Consensus 231 ~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~ 309 (1470)
+.+|||+|+++|+++.++++|++.|+++.+ ++|+|+++++++||+.+++.++++++..++.+++|++++.+++++.+++
T Consensus 256 ~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~ 335 (1622)
T PLN03130 256 TEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE 335 (1622)
T ss_pred ChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998754 5689999999999999999999999999999999999999999997643
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHHhHHHHH
Q 000475 310 DHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIG 386 (1470)
Q Consensus 310 ~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~ 386 (1470)
. ... |++++++++++.++.+++.++|++...++++++|+.++..+|+|.++++.... ++|+++|+|++|++++.
T Consensus 336 ~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~ 412 (1622)
T PLN03130 336 P--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQ 412 (1622)
T ss_pred c--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 2 333 77777777777777788888999999999999999999999999999987543 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000475 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466 (1470)
Q Consensus 387 ~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~ 466 (1470)
+++..+|.+|..|+++++++++||..+| +++++|++++++++|++..+++++++.++++++.+|+|++.++|+++|||+
T Consensus 413 ~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~ 491 (1622)
T PLN03130 413 QICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDT 491 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 889999888999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000475 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPI 546 (1470)
Q Consensus 467 IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl 546 (1470)
||+|+||+.|.+++++.|++|++..++..+..++..++....|.++++++|++|.+.++.+|++.+|++++++++++.|+
T Consensus 492 IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl 571 (1622)
T PLN03130 492 VKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPL 571 (1622)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888788888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcE
Q 000475 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSK 625 (1470)
Q Consensus 547 ~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~ 625 (1470)
..+|..+..+.++++|++||++|+..+|..+... .+.......|+++|++|+|+++ +..+.|+| ||++++|++
T Consensus 572 ~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge~ 645 (1622)
T PLN03130 572 FMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAISIKNGYFSWDSK-----AERPTLSNINLDVPVGSL 645 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceEEEeeEEEccCC-----CCCceeeceeEEecCCCE
Confidence 9999999999999999999999998766321111 1111123469999999999854 23578999 999999999
Q ss_pred EEEEcCCCCChHHHHHHHhCCCcCCC-CcEEEECCEeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHH
Q 000475 626 VAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1470)
Q Consensus 626 ~~ivG~~GsGKSTLl~~llG~~~~~~-G~~i~~~g~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~ 704 (1470)
++|+||+|||||||+++|+|+++|.+ |++ .+++++|||+|+||+|++||||||+||+++++++|++++++|+|++|++
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 646 VAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999 886 8999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhh
Q 000475 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784 (1470)
Q Consensus 705 ~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 784 (1470)
.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~ 804 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS 804 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCc-c-cccCcccc--cchhhhhcc-CCCCCC
Q 000475 785 AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK-C-LSRVPCQM--SQITEERFA-RPISCG 859 (1470)
Q Consensus 785 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~-~~~~~~ 859 (1470)
.||+|++|++|+|+++|+++|+.+ .+..+.++...+....+..+...+.. . ....+... .....+... ......
T Consensus 805 ~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1622)
T PLN03130 805 QVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKE 883 (1622)
T ss_pred hCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999987 55566666544321110000000000 0 00000000 000000000 000001
Q ss_pred CCCCCCccchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccc--cccccchhhhHHHhh
Q 000475 860 EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLS 937 (1470)
Q Consensus 860 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~ 937 (1470)
....+.++|+++.|.++|++|+.|+++.++.+++.+++++.++.+++.+++++|+++|++... ......|+++|++++
T Consensus 884 ~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~ 963 (1622)
T PLN03130 884 GKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLS 963 (1622)
T ss_pred cchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHH
Confidence 112345678889999999999999999877666666667777888889999999999986322 122456788899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHH
Q 000475 938 GGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLS 1017 (1470)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~ 1017 (1470)
++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++
T Consensus 964 ~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~ 1043 (1622)
T PLN03130 964 FGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLS 1043 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchH
Q 000475 1018 IIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1097 (1470)
Q Consensus 1018 ~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e 1097 (1470)
.++++++++|...++++|+.+++++++ ++|.+++|+++|.+..+++|+++|+.|+++|+.|||+|+++
T Consensus 1044 ~~i~i~~~~~~~~~~~~pl~~~~~~~~------------~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~ 1111 (1622)
T PLN03130 1044 TFVLIGIVSTISLWAIMPLLVLFYGAY------------LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 1111 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHH
Confidence 999988888877777777766655555 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CcCHHHHHHHHHHHHHHHHHHHH
Q 000475 1098 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS----AIDPSLAGLAATYGLNLNVLQAW 1173 (1470)
Q Consensus 1098 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~gl~l~y~l~l~~~~~~ 1173 (1470)
++|.+++.+..|.+.+..+.....++|++.++++++++++.+.+.+.+..... ...++.+|++++|++.+...+.+
T Consensus 1112 ~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~ 1191 (1622)
T PLN03130 1112 DRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTA 1191 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887666554443322111 11267899999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEE
Q 000475 1174 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1253 (1470)
Q Consensus 1174 ~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIV 1253 (1470)
+++.+.++|+.++|+||+.+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||
T Consensus 1192 l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIV 1271 (1622)
T PLN03130 1192 VLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIV 1271 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEE
Confidence 99999999999999999999999998876544445567789999999999999999988788999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHc
Q 000475 1254 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKC 1333 (1470)
Q Consensus 1254 GrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~ 1333 (1470)
||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||+++
T Consensus 1272 GrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a 1351 (1622)
T PLN03130 1272 GRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERA 1351 (1622)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEec
Q 000475 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH 1413 (1470)
Q Consensus 1334 ~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAH 1413 (1470)
+++++|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||||+|||
T Consensus 1352 ~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAH 1431 (1622)
T PLN03130 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1431 (1622)
T ss_pred CcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000475 1414 RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1459 (1470)
Q Consensus 1414 Rl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~~ 1459 (1470)
|++|+++||||+|||+|+|+|+|+|++|+++++|.|++|+++....
T Consensus 1432 RL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1432 RLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred ChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 9999999999999999999999999999998789999999987753
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-205 Score=2087.82 Aligned_cols=1415 Identities=30% Similarity=0.504 Sum_probs=1169.2
Q ss_pred hhhcchhhhhHHHHHHHHHHHHHHHHHHhhcCCCcchhh--hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhccc-cccc
Q 000475 8 ELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSFK 84 (1470)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (1470)
...-.|.++..+..+++++++...+....+++....+.. ...+....+.++|+....+++...+.... ...+ .. +
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 107 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLF-DMDEETD-L 107 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccc-c
Confidence 344456666677777777666666555432222211101 12223455566666666665533332221 1111 12 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhc-----cccccchHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Q 000475 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1470)
...+...+..+++..+++.+.+.++ +..++++++++||++. +++.+ . ........... ....+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~~ 181 (1495)
T PLN03232 108 PPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDL-V---LPLKNSINRTA--LYLCISSR 181 (1495)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHH-H---HHHHHHHhccc--cceehhHH
Confidence 3334443555666666622111122 1456799999999998 66554 2 11111112110 01122222
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCC---CCCCc--cccccccccCCCCcccCCHhHHHHHHhHHHHHHhhccCCCC
Q 000475 157 DFVSLPLLVLLCFNATYACCCARDPSDLD---IPLLR--EEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLE 231 (1470)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~ 231 (1470)
.+.+.+.+..+. .+.|..+. +... .+..+ +.+..+.+.+++||++||+|||++|||++|++++||+++|+
T Consensus 182 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~ 256 (1495)
T PLN03232 182 CCQALFGILLLV----YIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPIT 256 (1495)
T ss_pred HHHHHHHHHHHH----hcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 222221111100 11122211 0000 00111 00112335678999999999999999999999999999999
Q ss_pred CCCCCCCCcCCcHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000475 232 LLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD 310 (1470)
Q Consensus 232 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~ 310 (1470)
.+|||+|+++|+++.++++|++.|+++.+ ++++++++++++||+.++..++++++.+++.+++|++++.+++++++++.
T Consensus 257 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~ 336 (1495)
T PLN03232 257 EKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP 336 (1495)
T ss_pred hhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999998754 46899999999999999999999999999999999999999999976432
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHHhHHHHHH
Q 000475 311 HSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGD 387 (1470)
Q Consensus 311 ~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~~ 387 (1470)
... |+.++++++++.++.+++.++|++...++++++|+.++..+|+|.++++.... ++|+++|+|++|++++.+
T Consensus 337 --~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~ 413 (1495)
T PLN03232 337 --AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQ 413 (1495)
T ss_pred --cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 333 88888888889999999999999999999999999999999999999987543 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000475 388 FFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467 (1470)
Q Consensus 388 ~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~I 467 (1470)
+...+|.+|..|++++++++++|..+| ++++++++++++++|++..+++++++.++++++.+|+|.+.++|+++|||+|
T Consensus 414 ~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~I 492 (1495)
T PLN03232 414 IAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTV 492 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8889998888899999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 000475 468 KLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIY 547 (1470)
Q Consensus 468 K~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~ 547 (1470)
|+|+||+.+.+++++.|++|.+..++..+..+...++....|.++++++|++|.+.++++|++.+|+++++++.+..|+.
T Consensus 493 K~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~ 572 (1495)
T PLN03232 493 KCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLN 572 (1495)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888777777778888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEE
Q 000475 548 NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKV 626 (1470)
Q Consensus 548 ~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~ 626 (1470)
.+|..+..+.++++|++||++|++.+|+.+... .+.......|+++|++|+|+.+ +..+.|+| ||++++|+++
T Consensus 573 ~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~v 646 (1495)
T PLN03232 573 MLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSLV 646 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCEE
Confidence 999999999999999999999998765321111 1111123469999999999854 23578999 9999999999
Q ss_pred EEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCEeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhc
Q 000475 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706 (1470)
Q Consensus 627 ~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l 706 (1470)
+|+||+|||||||+++|+|+++|.+|++..+++.+|||+|+||+|++||||||+||+++++++|++++++|+|++|++.+
T Consensus 647 aIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~L 726 (1495)
T PLN03232 647 AIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLL 726 (1495)
T ss_pred EEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhC
Confidence 99999999999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhc
Q 000475 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786 (1470)
Q Consensus 707 ~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 786 (1470)
|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.++++|+|+|||+++.++.|
T Consensus 727 p~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~a 806 (1495)
T PLN03232 727 PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM 806 (1495)
T ss_pred CCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCCCCC-CCcccccCcccccchhhhhccCCC-CCCCCCCC
Q 000475 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ-EDKCLSRVPCQMSQITEERFARPI-SCGEFSGR 864 (1470)
Q Consensus 787 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 864 (1470)
|+|++|++|+|+++|+++|+.+ .+..+.++...+....+..+..+ .+......+.......++...... .+.....+
T Consensus 807 D~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1495)
T PLN03232 807 DRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVL 885 (1495)
T ss_pred CEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 9999999999999999999987 55566665543321111000000 000000000000000000000000 00111235
Q ss_pred CccchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccc--cccccchhhhHHHhhhHHHH
Q 000475 865 SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSSF 942 (1470)
Q Consensus 865 ~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~~ 942 (1470)
.++|+++.|.++|++|+.|+++.++++.+.+++++.++.+++.+++++|+++|++... ......|+++|++++++..+
T Consensus 886 ~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~ 965 (1495)
T PLN03232 886 VKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVA 965 (1495)
T ss_pred hhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHH
Confidence 6778899999999999999999877666666666777788888999999999985321 22346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 000475 943 FILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILM 1022 (1470)
Q Consensus 943 ~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~ 1022 (1470)
+.+++.+++...+.++++++|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++..++.+++.++++
T Consensus 966 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 966 VTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHH
Q 000475 1023 SQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLL 1102 (1470)
Q Consensus 1023 ~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~ 1102 (1470)
+.+++...++++|+.+++++.+ .+|.+++|+++|.+..+++|+++|++|+++|+.|||+|+++++|.+
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~ 1113 (1495)
T PLN03232 1046 GTVSTISLWAIMPLLILFYAAY------------LYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAK 1113 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHH
Confidence 8777766666666666555555 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1103 RSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI-----DPSLAGLAATYGLNLNVLQAWVIWN 1177 (1470)
Q Consensus 1103 ~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~gl~l~y~l~l~~~~~~~i~~ 1177 (1470)
++.+..|.+.+..+.....++|+..++++++++++.+.+.+.+.. .+.. .++.+|++++|+..+...+.++++.
T Consensus 1114 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~ 1192 (1495)
T PLN03232 1114 INGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQ 1192 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999899999999999988766555444433322 2221 2567888999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCC
Q 000475 1178 LCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTG 1257 (1470)
Q Consensus 1178 ~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTG 1257 (1470)
+.++|+.++|+||+.+|.+.|+|++...+...+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||
T Consensus 1193 ~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SG 1272 (1495)
T PLN03232 1193 ASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTG 1272 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCC
Confidence 99999999999999999999888654333344667899999999999999998887889999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHH
Q 000475 1258 SGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1337 (1470)
Q Consensus 1258 SGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~ 1337 (1470)
||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||+++++++
T Consensus 1273 SGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232 1273 AGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKD 1352 (1495)
T ss_pred CCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhh
Q 000475 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPT 1417 (1470)
Q Consensus 1338 ~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~t 1417 (1470)
+|+++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||++||+.||++|++.+++||||+||||++|
T Consensus 1353 ~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred HHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000475 1418 VIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1459 (1470)
Q Consensus 1418 i~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~~ 1459 (1470)
+++||||+|||+|+|+|+|+|+||+++++|.|++|+++....
T Consensus 1433 i~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1433 IIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999999998888999999987654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-202 Score=2056.50 Aligned_cols=1232 Identities=33% Similarity=0.591 Sum_probs=1092.7
Q ss_pred cCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhcC------------------
Q 000475 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT------------------ 260 (1470)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~------------------ 260 (1470)
.+.+||++||++||++|||+||++++||+++|+.+|||+++++|+++.++++|++.|+++.+
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 45789999999999999999999999999999999999999999999999999999986510
Q ss_pred ------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 000475 261 ------------------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (1470)
Q Consensus 261 ------------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~ 316 (1470)
++++|+++++++||+.++..++++++.+++.+++|++++.+++|+.++.. ....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~- 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQ- 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccch-
Confidence 23689999999999999999999999999999999999999999976543 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHHhHHHHHHHHHHHH
Q 000475 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (1470)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~~~~~~~~ 393 (1470)
||+++++++++.++.+++.++|+|...++|+++|++|+..||+|+|+++.... ++|+++|+|++|++++.++..++|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999987654 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccH
Q 000475 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1470)
Q Consensus 394 ~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE 473 (1470)
.+|..|++++++++++|..+| ++++++++++++++|++..++++.+++++++|+.+|+|++.++|+++|||+||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (1470)
Q Consensus 474 ~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~--~~~L~~~~vft~l~~~~~l~~pl~~lp~ 551 (1470)
+.|.+++++.|++|++..++..+......+.++..|.++.+++|++|.+. ++.|+++.+|++++++++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877777888999999999998876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCC-CCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEE
Q 000475 552 LISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAV 628 (1470)
Q Consensus 552 ~i~~~~~a~vs~~Ri~~fL~~~e~-~~~~~~~~~-~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~i 628 (1470)
.+..+.++++|++||++|++.++. ++....... ......|+++|++|+|+.+ ..+.|+| ||++++|++++|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEE
Confidence 999999999999999999987652 211111111 1112369999999999753 3468999 999999999999
Q ss_pred EcCCCCChHHHHHHHhCCCcCCCCcEEEECCEeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccC
Q 000475 629 CGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708 (1470)
Q Consensus 629 vG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~ 708 (1470)
+||||||||||+++|+|+++|++|++ .++|++|||+|+||++++||+|||.||.++++++|++++++|++.+|++.+|+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 748 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS 748 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCC
Confidence 99999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHH--HhhcCCcEEEEEcCCcchhhhc
Q 000475 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQLEFLDAA 786 (1470)
Q Consensus 709 g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~--~~~~~~~tvilvtH~~~~l~~~ 786 (1470)
||+|.+|++|.+|||||||||+||||+|++||+|||||||||||+++++++++.++ .+.++++|+|+|||++++++.|
T Consensus 749 g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 99999999999999999999999999999999999999999999999999999887 3566789999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCC--CCC------CCCccc---c---------cCcccc--
Q 000475 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV--NPP------QEDKCL---S---------RVPCQM-- 844 (1470)
Q Consensus 787 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~---~---------~~~~~~-- 844 (1470)
|+|++|++|++++.|+++++.+ ++..+.++...+....+.. +.. .+.... . ..+...
T Consensus 829 D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1522)
T TIGR00957 829 DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQL 907 (1522)
T ss_pred CEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999987 4555655554322110000 000 000000 0 000000
Q ss_pred ---cc-hhh-hhc-------cCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhH
Q 000475 845 ---SQ-ITE-ERF-------ARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNY 912 (1470)
Q Consensus 845 ---~~-~~~-~~~-------~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 912 (1470)
.. ... .+. ..........+..++|+++.|+++|++|+.|+++.+ +..+++++++.++.+++..++++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 986 (1522)
T TIGR00957 908 SASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNY 986 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 000 000000011234566778899999999999999875 44444555566777888899999
Q ss_pred HHHHhccccc----cccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHH
Q 000475 913 WIAWATDEKR----KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1470)
Q Consensus 913 wl~~~~~~~~----~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~iln 988 (1470)
|+++|.+... ..+...++++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+|
T Consensus 987 ~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~iln 1066 (1522)
T TIGR00957 987 WLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN 1066 (1522)
T ss_pred HHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHH
Confidence 9999986321 122446778999999999888888989999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 000475 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELAR 1068 (1470)
Q Consensus 989 R~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~r 1068 (1470)
||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++ ++|.+++|+++|
T Consensus 1067 R~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~r~~~~ 1134 (1522)
T TIGR00957 1067 RFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQ------------RFYVASSRQLKR 1134 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888887777777776666666 899999999999
Q ss_pred HHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000475 1069 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLP 1148 (1470)
Q Consensus 1069 l~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~ 1148 (1470)
++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.++++.+.....++|+..++++++++++.+++.+.+ ..
T Consensus 1135 ~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~ 1213 (1522)
T TIGR00957 1135 LESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-IS 1213 (1522)
T ss_pred HHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 99999999999999999999999999999999999999999999999999999999999999988765554444333 33
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEE
Q 000475 1149 RSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQ 1228 (1470)
Q Consensus 1149 ~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~ 1228 (1470)
.+.+++|.+|++++|++.+...+.++++.++++|+.++|+||+.+|.+.|+|.+...+...++++||..|.|+|+||+|+
T Consensus 1214 ~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~ 1293 (1522)
T TIGR00957 1214 RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLR 1293 (1522)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEE
Confidence 56789999999999999999999999999999999999999999999988876533334456678999999999999999
Q ss_pred eCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCc
Q 000475 1229 YNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1308 (1470)
Q Consensus 1229 Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~ 1308 (1470)
|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+
T Consensus 1294 Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~ 1373 (1522)
T TIGR00957 1294 YREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS 1373 (1522)
T ss_pred eCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccC
Confidence 98877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 000475 1309 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388 (1470)
Q Consensus 1309 gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD 1388 (1470)
||||+||||+++++|+|||+||++|+++++|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||
T Consensus 1374 gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD 1453 (1522)
T TIGR00957 1374 GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453 (1522)
T ss_pred ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000475 1389 TATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1456 (1470)
Q Consensus 1389 ~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~ 1456 (1470)
.+||+.||++|++.+++||||+||||++|+++||||+|||+|+|+|+|+|++|+++ +|.|++|+++.
T Consensus 1454 ~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1454 LETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999986 69999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-197 Score=1997.50 Aligned_cols=1235 Identities=27% Similarity=0.464 Sum_probs=1077.7
Q ss_pred CCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhc---CCCCChHHHHHHHHHHHH
Q 000475 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (1470)
Q Consensus 201 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~---~~~~~l~~~l~~~~~~~~ 277 (1470)
.+||++||+|||++|||+||++++||+++|+.+|||+|+++|+++.++++|++.|+++. .++++|+++++++||+.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999998753 245899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1470)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~i 357 (1470)
++.++++++.+++.+++|++++.+++|++.... .....||+++++++++.++++++.++++|...++|+++|++|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999964332 2222389999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCC---CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000475 358 YKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1470)
Q Consensus 358 y~K~L~ls~~~~---~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~ 434 (1470)
|+|.|+++..+. ++|+++|+|++|++++.+++.++|.+|..|+++++++++||..+| +++++|+++++++++++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999976543 789999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1470)
Q Consensus 435 ~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 514 (1470)
+++++.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+......++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000475 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1470)
Q Consensus 515 ~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~i~~ 593 (1470)
++|++|.+.++ ++++.+||++++|++++.|+. .+|..+..+.++++|++||++||..+|.++... ......+++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----NLTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----cCCCCceEE
Confidence 99999987754 789999999999999999985 799999999999999999999998876322111 112235999
Q ss_pred eeeEEEeCCCc--------cc------cC------------CCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCC
Q 000475 594 EAGEYAWDARE--------EN------FK------------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 594 ~~~~f~w~~~~--------~~------~~------------~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~ 646 (1470)
+|++|+|+... .. .. ...+.|+| ||++++|++++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999996420 00 00 01357899 999999999999999999999999999999
Q ss_pred CcCCCCcEEEECCEeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 647 ~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
++|++|++ .++|.+|||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||.|.+|++|.+||||||
T Consensus 476 ~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 476 LEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999997 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhH
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 806 (1470)
|||+||||+|++|++|||||||||||+++++++++.|+.+.++++|+|+|||+++.++.||+|++|++|++.+.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888877789999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHhh---h----c-------------cc--C-------C------CCCCC--Cc--------------
Q 000475 807 IADQNSELVRQMKAHR---K----S-------------LD--Q-------V------NPPQE--DK-------------- 835 (1470)
Q Consensus 807 ~~~~~~~~~~~~~~~~---~----~-------------~~--~-------~------~~~~~--~~-------------- 835 (1470)
.+ .+..+........ + . .+ . . .+..+ ..
T Consensus 635 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 635 QA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred Hh-cChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76 3334433332100 0 0 00 0 0 00000 00
Q ss_pred ---------------c-c--ccCcc-------------------ccc---------chh--------h------hh----
Q 000475 836 ---------------C-L--SRVPC-------------------QMS---------QIT--------E------ER---- 851 (1470)
Q Consensus 836 ---------------~-~--~~~~~-------------------~~~---------~~~--------~------~~---- 851 (1470)
. . ...+. ... +.. . ++
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0 0 00000 000 000 0 00
Q ss_pred --ccC-------------------C-CCC------------CCCCCCCccchhhcCcchHHHHHHHHHHhchhhHHHHHH
Q 000475 852 --FAR-------------------P-ISC------------GEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVIL 897 (1470)
Q Consensus 852 --~~~-------------------~-~~~------------~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~ 897 (1470)
..+ . ... .......++|+++.|.++|++|+.|+++.+++.++.+++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 000 0 000 000113445777889999999999999886656655666
Q ss_pred HHHHHHHHHHhhhhHHHHHhcccc--------ccc-------------cccch-hhhHHHhhhHHHHHHHHHHHHHHHHH
Q 000475 898 LCQVLFQALQMGSNYWIAWATDEK--------RKV-------------SREQL-IGVFIFLSGGSSFFILGRAVLLATIA 955 (1470)
Q Consensus 898 l~~~~~~~~~~~~~~wl~~~~~~~--------~~~-------------~~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~~ 955 (1470)
++.++.+++..++++|+++|.... +.. ...+| +++|++++++..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999998775311 000 11122 45555555556677788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000475 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1470)
Q Consensus 956 ~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip 1035 (1470)
.++++++|.+++++++++|++||+++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877778
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 000475 1036 ILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVT 1115 (1470)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~ 1115 (1470)
+++++++++ ++|.+++|+++|++..+++|+++|+.|++.|+.|||+|+++++|.+++.+..|.+++.+
T Consensus 1034 l~~~~~~~~------------~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~ 1101 (1490)
T TIGR01271 1034 VAVIFIMLR------------AYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANW 1101 (1490)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 777666666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 000475 1116 FHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1195 (1470)
Q Consensus 1116 ~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~ 1195 (1470)
+.....++|+..++++++.+.+..++++.+. ....++|.+|++++|++.+...+.++++.++++|+.+.|+||+.+|.
T Consensus 1102 ~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1179 (1490)
T TIGR01271 1102 FLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI 1179 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876654443333222 22356788999999999999999999999999999999999999999
Q ss_pred cCCCCCccccC--------------CCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHH
Q 000475 1196 NIPSEAPLVIK--------------NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1261 (1470)
Q Consensus 1196 ~~~~E~~~~~~--------------~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKS 1261 (1470)
+.|+|.+...+ ...+|+.||..|.|+|+||+++|+++.++||+|+||+|+||||||||||||||||
T Consensus 1180 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKS 1259 (1490)
T TIGR01271 1180 DLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKS 1259 (1490)
T ss_pred cCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHH
Confidence 98877542111 1234567999999999999999998778999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHh
Q 000475 1262 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1341 (1470)
Q Consensus 1262 TLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~ 1341 (1470)
||+++|+|+++ ++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||++|+|+++|.+
T Consensus 1260 TLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~ 1338 (1490)
T TIGR01271 1260 TLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQ 1338 (1490)
T ss_pred HHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHh
Confidence 99999999998 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000475 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDN 1421 (1470)
Q Consensus 1342 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~ 1421 (1470)
+|+||||+|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+|
T Consensus 1339 lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~ 1418 (1490)
T TIGR01271 1339 FPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLEC 1418 (1490)
T ss_pred CccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhhc
Q 000475 1422 DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460 (1470)
Q Consensus 1422 DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~~~ 1460 (1470)
|||+||++|+|+|+|+|++|++ ++|.|++|+++.....
T Consensus 1419 DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~~ 1456 (1490)
T TIGR01271 1419 QQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRLK 1456 (1490)
T ss_pred CEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChhc
Confidence 9999999999999999999997 5899999999887543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-187 Score=1901.96 Aligned_cols=1243 Identities=29% Similarity=0.483 Sum_probs=1073.6
Q ss_pred cCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcCCcHHHHHHHHHHHHHhhcC------------------
Q 000475 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT------------------ 260 (1470)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~------------------ 260 (1470)
..+.||++||||.++++.|++|++.+..|..|+.+|+|+...+.++-++..++.+..+++..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 34579999999999999999999999999999999999999999886665555443221100
Q ss_pred ---------------------------------C----------------------------------------------
Q 000475 261 ---------------------------------D---------------------------------------------- 261 (1470)
Q Consensus 261 ---------------------------------~---------------------------------------------- 261 (1470)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000475 262 --------------ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (1470)
Q Consensus 262 --------------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~ 327 (1470)
..+|+|+++++||+.+++.++++++.+++.+++|++++.+++|++++.. .+..|++++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHH
Confidence 0379999999999999999999999999999999999999999976543 343488899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-----CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000475 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG-----PSSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1470)
Q Consensus 328 ~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy~K~L~ls~~~-----~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i 402 (1470)
.++++++.++|+|...+.|+++|++|.+.+|+|+++++..+ .++|+++|+|++|++++.+++.++|.+|..|+++
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987643 2789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHH
Q 000475 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1470)
Q Consensus 403 ~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~ 482 (1470)
++++++||..+| +++++|++++++++|++.++++++.++++++|+.+|+|++.++|+++|||+||+||||+.|.++|++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1470)
Q Consensus 483 ~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs 562 (1470)
.|++|++.+++..+..++..++.+++|.++.+++|++|++.+++||++.+|+++++|++++.|+.++|..++.+.++++|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC-CCCC----CC-----CCC------------------------------------------------
Q 000475 563 LYRIQEFIKEDNQ-KKPI----TE-----PTS------------------------------------------------ 584 (1470)
Q Consensus 563 ~~Ri~~fL~~~e~-~~~~----~~-----~~~------------------------------------------------ 584 (1470)
++||++||..+|. .+.. +. ...
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999987651 1000 00 000
Q ss_pred -CCCCccEEEeeeEEEeCCCcc-------------------------------cc-CCCcccccC-ceEeeCCcEEEEEc
Q 000475 585 -KASDVAIDIEAGEYAWDAREE-------------------------------NF-KKPTIKLTD-KMKIMKGSKVAVCG 630 (1470)
Q Consensus 585 -~~~~~~i~~~~~~f~w~~~~~-------------------------------~~-~~~~~~L~~-nl~i~~G~~~~ivG 630 (1470)
......+.++|++|+|+.... .+ ....+.|++ ||++++|++++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 000123566677776642110 00 012457889 99999999999999
Q ss_pred CCCCChHHHHHHHhCCCcCCCCcEEEECCEeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCC
Q 000475 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710 (1470)
Q Consensus 631 ~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~ 710 (1470)
|||||||||+++|+|+++|++|++ .+++.+|||+|+||++++||+|||.|+.++++++|++++++|++++|++.+|+|+
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 772 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL 772 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc
Confidence 999999999999999999999997 7889999999999999999999999999888889999999999999999999999
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEE
Q 000475 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1470)
Q Consensus 711 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 790 (1470)
+|.+|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+.++++|+|+|||+++.++.||+|+
T Consensus 773 ~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999988877778999999999999999999999
Q ss_pred EEeCCEEEEecChhhHHhhchhHHHHHHHHhhhccc--CCCCCCCCcccccCc---ccccc--hhhhhc--cC--CCCCC
Q 000475 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD--QVNPPQEDKCLSRVP---CQMSQ--ITEERF--AR--PISCG 859 (1470)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~--~~~~~~--~~--~~~~~ 859 (1470)
+|++|++.+.|+++++.+ .. .+..+........+ ......+.......+ ..... ..+... .. .....
T Consensus 853 ~l~~G~i~~~G~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMR-TS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred EEECCEEEEecCHHHHHh-Ch-HHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999986 32 34333322111100 000000000000000 00000 000000 00 00011
Q ss_pred CCCCCCccchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhH
Q 000475 860 EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGG 939 (1470)
Q Consensus 860 ~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~ 939 (1470)
...++.++|+++.|.++|++|+.|+++.++..++.+++++.++.+++..++++|+++|++.....+...|+++|+++.++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~ 1010 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL 1010 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHH
Confidence 12345667788899999999999999987666555555666677888899999999998644334456788899988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHH
Q 000475 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1470)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~ 1019 (1470)
..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHH
Q 000475 1020 ILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENR 1099 (1470)
Q Consensus 1020 ~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~ 1099 (1470)
+++++..|.++++++|+.++++++. ++|.+..|+++|.....++|++++++|+++|+.|||+|+.++.
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~------------~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~ 1158 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLM------------QFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHL 1158 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHH
Confidence 9998888877766666665555554 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1100 FLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV---TLPRSAIDPSLAGLAATYGLNLNVLQAWVIW 1176 (1470)
Q Consensus 1100 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~ 1176 (1470)
|.+++.+..|.+.+..+.....++|+..+++++.+++.++++++.+ ....+..++|.++++++|+.++...+.++++
T Consensus 1159 ~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~ 1238 (1560)
T PTZ00243 1159 VMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVR 1238 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988776544433322 2234456789999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhc-CCCCCcccc-----------------------CCCCCC---CCCCCCCcEEEEeEEEEe
Q 000475 1177 NLCNVENKMISVERILQFTN-IPSEAPLVI-----------------------KNSRPS---PEWPSSGKIELENLLVQY 1229 (1470)
Q Consensus 1177 ~~~~le~~~~sveRi~~~~~-~~~E~~~~~-----------------------~~~~~~---~~wp~~g~I~~~nvs~~Y 1229 (1470)
.+.++|+.|.|+||+.+|.+ .|+|+.... +...++ +.||..|.|+|+||+|+|
T Consensus 1239 ~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y 1318 (1560)
T PTZ00243 1239 QVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRY 1318 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEe
Confidence 99999999999999999996 444421100 011122 245677999999999999
Q ss_pred CCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcc
Q 000475 1230 NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1309 (1470)
Q Consensus 1230 ~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~g 1309 (1470)
+++.|+||+||||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+|
T Consensus 1319 ~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g 1398 (1560)
T PTZ00243 1319 REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG 1398 (1560)
T ss_pred CCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc
Confidence 98878899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccC-CCEEEEeccCCCCC
Q 000475 1310 TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK-KRILVLDEATASID 1388 (1470)
Q Consensus 1310 TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~-~~ILlLDEaTsslD 1388 (1470)
|||+||||+++++|+|||+||++|+++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||
T Consensus 1399 TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD 1478 (1560)
T PTZ00243 1399 TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478 (1560)
T ss_pred cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999996 89999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhh
Q 000475 1389 TATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1459 (1470)
Q Consensus 1389 ~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~~ 1459 (1470)
++||+.||++|++.+++||||+||||++|+.+||+|+||++|+|+|+|+|+||+++++|.|++|+++....
T Consensus 1479 ~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1479 PALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999999999999988889999999887543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-141 Score=1335.61 Aligned_cols=1086 Identities=22% Similarity=0.265 Sum_probs=822.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000475 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKN 412 (1470)
Q Consensus 334 ~~~~~~~~~~r~g~rir~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~ 412 (1470)
....|.+...|...|+|.....++.|+-....... .+|++.+.|+.|+++|.+++.. +..+....-.++.++++.+ .
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F-~ 168 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGF-Y 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34678889999999999999999999777654433 4499999999999999998742 2212222222222333222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000475 413 LGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLK 492 (1470)
Q Consensus 413 lG~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~ 492 (1470)
.+|..+++++.+..++......+++.+.+...+.+++-.+--+...|.+.+||++-.|+-|+...++..+.=+.-.+.-.
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 37788899998888888888999998888888888888888999999999999999999999877766554222222222
Q ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000475 493 KYLYTCSAIA-FL-FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI 570 (1470)
Q Consensus 493 ~~~~~~~~~~-~~-~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL 570 (1470)
+......+.. +. +++-......++||..++..+..+++.+++.+...-+-...+.+....++.+.+|+++..+|.+.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 2222222221 11 222233455678888888888899999999887776777888888889999999999999999999
Q ss_pred cccCCCCCC--CCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCC
Q 000475 571 KEDNQKKPI--TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 571 ~~~e~~~~~--~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 647 (1470)
+..++.++. ...........|+++|+.|+||.+ ++.+.|++ ||+|++|+.+|+||||||||||++++|.|.+
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy 403 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY 403 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 876532221 122233345789999999999988 56788999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEECC-------------EeEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCccc
Q 000475 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSV 713 (1470)
Q Consensus 648 ~~~~G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ 713 (1470)
+|++|++ .++| ++|.|+|+|.+|++||+|||.||+|. ..++..++.+.....+.+..+|+|++|.
T Consensus 404 dP~~G~V-~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 404 DPTSGEV-LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred CCCCceE-EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 9999997 8887 46999999999999999999999964 5677777888888888999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000475 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1470)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 793 (1470)
+||+|..|||||||||||||||.+||+||||||||||||++++ ++.++.+....+|+|.|+|+|+++.+..||+|++|+
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se-~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-RVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVME 561 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH-HHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEE
Confidence 9999999999999999999999999999999999999999975 555778888889999999999999999999999999
Q ss_pred CCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCC-CCCCCcc----cccCcccccchhhhh-----c--cCCCCCCCC
Q 000475 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PPQEDKC----LSRVPCQMSQITEER-----F--ARPISCGEF 861 (1470)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~-----~--~~~~~~~~~ 861 (1470)
+|+|++.|+++||++. ...+.++++.++......+ +.+++.. .+...........+. . .++..+...
T Consensus 562 ~G~IvE~G~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~ 640 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPE 640 (1228)
T ss_pred CCEEEEecCHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccc
Confidence 9999999999999994 4888888877643322111 0000000 000000000000000 0 000000000
Q ss_pred CCCCccchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHH----HHhhhhHHHHHhccccc---cccccchhhhHH
Q 000475 862 SGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQA----LQMGSNYWIAWATDEKR---KVSREQLIGVFI 934 (1470)
Q Consensus 862 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~wl~~~~~~~~---~~~~~~~l~vy~ 934 (1470)
... .+++ -.+++....+|.+. .|.++.+-+++.++..+ +.......+......++ ......|...|+
T Consensus 641 ~~~-~~~~---~~~s~~~i~k~~~p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~ 714 (1228)
T KOG0055|consen 641 EPV-SEED---EKVSFWRIFKLNKP--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFL 714 (1228)
T ss_pred ccc-cccc---ccccHHHHHHhccc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 000 1111 12222222222222 22222222222222222 22222222221111111 112234788899
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--cChhhHHHHHhhchhhhhcchHHHHHHHHHHH
Q 000475 935 FLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1470)
Q Consensus 935 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~--~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1012 (1470)
++++.+.++.++..+++.+.+.+..++++.++|+++++.++.|||. +. |++.+|+++|...+...+...+..++.++
T Consensus 715 ~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~ 793 (1228)
T KOG0055|consen 715 GLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNI 793 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 45 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhH
Q 000475 1013 IQLLSIIILMSQAAWQVFPLFL---VILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGAT 1089 (1470)
Q Consensus 1013 ~~~~~~~~v~~~~~~~~~~~~i---p~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~ 1089 (1470)
..++..+++.++++|.+.++.+ |++++..+.+. +++-..+++.+... ........|++++++
T Consensus 794 ~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~-----------~~~~~~~~~~~~~~----~ea~~iA~eai~NIr 858 (1228)
T KOG0055|consen 794 AAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQK-----------KFLKGFSKDDKKAY----EEASKIAIEAVSNIR 858 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhHHHHHHH----HHHHHHHHHHHHhHH
Confidence 9999999999999999987665 55555444441 23333333333322 223356789999999
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHH-HHhhcCCCcCHHHHHHHHHHHH
Q 000475 1090 TIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFL---VLII-LVTLPRSAIDPSLAGLAATYGL 1165 (1470)
Q Consensus 1090 tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~gl~l~y~l 1165 (1470)
||++|+.|++|++.+.+.++...+..+... .|-++...+-.+++++. +..+ ..+...+..++..+-..+.-..
T Consensus 859 TV~al~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~ 935 (1228)
T KOG0055|consen 859 TVAALCAEEKFMELYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALS 935 (1228)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHH
Confidence 999999999999999998888766655432 23333333222222222 1111 2233455555554433222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEe
Q 000475 1166 NLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTF 1244 (1470)
Q Consensus 1166 ~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i 1244 (1470)
.-............+.-....|+.++.+..+.+++-+...+... ..-+.+|+|+|+||+|+||.. ..+||+|+|++|
T Consensus 936 ~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~--~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i 1013 (1228)
T KOG0055|consen 936 FTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGG--KLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSI 1013 (1228)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC--ccccceeEEEEeeeEeeCCCCCCchhhcCCcEEe
Confidence 22223334455566777888899999999986654321111110 111358999999999999632 126999999999
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCH
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSD 1323 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd 1323 (1470)
++||.+|+||||||||||++.+|.|+|+|++|+|.|||.||++++++.||++|++|.|||.||++||||||... .+.+.
T Consensus 1014 ~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~ 1093 (1228)
T KOG0055|consen 1014 RAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSE 1093 (1228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 45799
Q ss_pred HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 000475 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403 (1470)
Q Consensus 1324 ~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~ 1403 (1470)
+||.+|++.++.++||.++|+||||.|||+|.+||||||||+|||||++|+||||+||||||+||.++|+.+|++|++..
T Consensus 1094 ~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~ 1173 (1228)
T KOG0055|consen 1094 EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM 1173 (1228)
T ss_pred HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1404 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1404 ~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
.++|+|+|||||+||++||.|.|+++|+|+|.|+|++|++ ++|.|++|++...
T Consensus 1174 ~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999999999999999999999999998 6899999998643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-131 Score=1335.39 Aligned_cols=1164 Identities=17% Similarity=0.173 Sum_probs=841.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1470)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1470)
++-..+.+++.++++.++.++..++..+.|+++..+++.+...+. ... ++..+++..++..++...+.+...++
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VND----IIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344567778888888888888888899999999987642211 111 11222222233333333344455566
Q ss_pred HHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 346 GIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1470)
Q Consensus 346 g~rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~ 421 (1470)
+.++...+...+|++.++++. .....|++.|.++.|++.+.+++. .+..+...++.++.++++++. ++|..+++.
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~ 203 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCI 203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 667777777777777777653 233789999999999999988764 455555556666666555553 555677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1470)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1470)
++++++++.+...+.++.++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+.-.+...+.....++.
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888888888999999999999999999999999999888765444333333333333332
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000475 502 AFLFWA--SPTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1470)
Q Consensus 502 ~~~~~~--~p~~v~~~~f~~~~~~~~--------~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~ 571 (1470)
..+... .-..+.+++||.+.+..+ .++++.+++.+....+...++..+...+..+.++++|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222111 122344567788777653 5888888877655544455556666678899999999999999998
Q ss_pred ccCCCCCC-CCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC
Q 000475 572 EDNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 572 ~~e~~~~~-~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~ 649 (1470)
.++..+.. .....+ ....|+++|++|+|+.+ +..+.|++ ||++++|+++||+||||||||||+++|+|.++|
T Consensus 364 ~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 364 RKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred CCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 76522111 111111 12369999999999854 23468999 999999999999999999999999999999999
Q ss_pred CCCcEEEEC-C-------------EeEEEcCCCCCCCccHHHHHhcCCC-------------------------------
Q 000475 650 ISGAAIKVH-G-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------- 684 (1470)
Q Consensus 650 ~~G~~i~~~-g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~------------------------------- 684 (1470)
++|++ .++ | .+|||+|+|.+|++||+|||.+|..
T Consensus 438 ~~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1466)
T PTZ00265 438 TEGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRA 516 (1466)
T ss_pred CCCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccc
Confidence 99997 773 3 3699999999999999999999742
Q ss_pred ---------------------------CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHcc
Q 000475 685 ---------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1470)
Q Consensus 685 ---------------------------~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1470)
.+++...++++.+++++.++.+|+|.+|.+|++|.+|||||||||+||||+++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~ 596 (1466)
T PTZ00265 517 KCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIR 596 (1466)
T ss_pred cccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhc
Confidence 12345667777888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhhcCEEEEEeCC--------------------
Q 000475 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG-------------------- 795 (1470)
Q Consensus 738 ~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G-------------------- 795 (1470)
+|+|+|||||||+||++++..+.+ .+..+. +++|+|+|||+++.+..||+|++|++|
T Consensus 597 ~P~ILlLDEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~ 675 (1466)
T PTZ00265 597 NPKILILDEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNK 675 (1466)
T ss_pred CCCEEEEeCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccc
Confidence 999999999999999999887765 455554 489999999999999889999999986
Q ss_pred ---------------------------EEEEecChhhHHhhchhHHHHHHHHhhhcccCCC-C-CCCCc----cc-c-cC
Q 000475 796 ---------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-P-PQEDK----CL-S-RV 840 (1470)
Q Consensus 796 ---------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~----~~-~-~~ 840 (1470)
+|+++|+++|+++..+..+..++..+........ . .+... .. . ..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1466)
T PTZ00265 676 ENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSE 755 (1466)
T ss_pred ccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccc
Confidence 5999999999997456677777755422211100 0 00000 00 0 00
Q ss_pred cc---cc-cch--hhhhc-cCCCCC----CCCCCCCcc------ch----hhcCcchHHHHHHHHHHhchhhHHHHHHHH
Q 000475 841 PC---QM-SQI--TEERF-ARPISC----GEFSGRSQD------ED----TELGRVKWTVYSAFITLVYKGALVPVILLC 899 (1470)
Q Consensus 841 ~~---~~-~~~--~~~~~-~~~~~~----~~~~~~~~~------e~----~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~ 899 (1470)
+. .. ... .+... ...... ....+...+ ++ .......+..++.++.......+ +.+++
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 833 (1466)
T PTZ00265 756 RGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALS 833 (1466)
T ss_pred cccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHH
Confidence 00 00 000 00000 000000 000000000 00 00001122233344433222211 11122
Q ss_pred HHHHHHHHhhhhHHHHHhcc----c-cccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000475 900 QVLFQALQMGSNYWIAWATD----E-KRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1470)
Q Consensus 900 ~~~~~~~~~~~~~wl~~~~~----~-~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap 974 (1470)
.++..++.....+.++.+.+ . ........+..++++++++..++.+++.++....+.+...+++.++++++++.|
T Consensus 834 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~ 913 (1466)
T PTZ00265 834 ILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQE 913 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222222223333332221 0 001112245566667777778888899999999999999999999999999999
Q ss_pred cccccc--cChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000475 975 ISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCH 1052 (1470)
Q Consensus 975 ~~ffd~--~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 1052 (1470)
++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.+.++++|++++......
T Consensus 914 ~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~------- 986 (1466)
T PTZ00265 914 ISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFA------- 986 (1466)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 999986 88999999999999999999998888888999999999899999999887776655433322110
Q ss_pred HHHHHHHHHHHHHHHHH-------------HhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1053 YLLQAYYITTARELARM-------------VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNC 1119 (1470)
Q Consensus 1053 ~~l~~~y~~~sr~l~rl-------------~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1119 (1470)
.+......++.++. +....+.....+.|++.|+.+||+|+.|+++.+++.+..+...+......
T Consensus 987 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~ 1063 (1466)
T PTZ00265 987 ---IRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKT 1063 (1466)
T ss_pred ---HHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111111111 12223456788999999999999999999999999999888776666554
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 000475 1120 GTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1198 (1470)
Q Consensus 1120 ~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~ 1198 (1470)
....++....+++..+..+++.++ ......+.++.+.+..++.+.+........+...+.++++...+.+|+.++++.+
T Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~ 1143 (1466)
T PTZ00265 1064 LVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRK 1143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 444444344444333322222222 2334467777776555444443333345556778888999999999999999876
Q ss_pred CCCccccCCCCC-CCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC---
Q 000475 1199 SEAPLVIKNSRP-SPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--- 1273 (1470)
Q Consensus 1199 ~E~~~~~~~~~~-~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p--- 1273 (1470)
++.+.......+ ++..+..|.|+|+||+|+|+.. ..+||+|+||+|+|||++||||+||||||||+++|.|+|+|
T Consensus 1144 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~ 1223 (1466)
T PTZ00265 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223 (1466)
T ss_pred CcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccc
Confidence 543211111111 0012346889999999999742 23699999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------CCcEEEEcCEeCCCCCHHHHhcccEEEcc
Q 000475 1274 ---------------------------------------------------SGGRILIDGVDISMIGLQDLRSRLSIIPQ 1302 (1470)
Q Consensus 1274 ---------------------------------------------------~~G~I~IDG~dI~~i~l~~LR~~isiIpQ 1302 (1470)
++|+|+|||+||+++++++||++|+||||
T Consensus 1224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1303 (1466)
T PTZ00265 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ 1303 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC
Confidence 69999999999999999999999999999
Q ss_pred CCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000475 1303 DPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381 (1470)
Q Consensus 1303 dp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1381 (1470)
||+||+|||||||..+ ++++|+||++|++.++++|||.++|+||||.|||+|.+|||||||||||||||+|+|+|||||
T Consensus 1304 ep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1304 EPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999887 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeC----CEE-EEecChhHHhhcCCChHHHHHH
Q 000475 1382 EATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDE----GKV-LEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1382 EaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~----G~v-vE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
||||+||++||+.|+++|++.. +++|+|+||||++++.+||+|+||++ |++ +|.|+|+||+++++|.|++|++
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 9999999999999999999873 68999999999999999999999999 995 5999999999866899999987
Q ss_pred HH
Q 000475 1455 EF 1456 (1470)
Q Consensus 1455 ~~ 1456 (1470)
..
T Consensus 1464 ~~ 1465 (1466)
T PTZ00265 1464 LA 1465 (1466)
T ss_pred hc
Confidence 54
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-87 Score=808.37 Aligned_cols=567 Identities=23% Similarity=0.335 Sum_probs=471.2
Q ss_pred hHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcc-----ccccccccchhhhHHHhhhHHHHHHHHHHHH
Q 000475 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATD-----EKRKVSREQLIGVFIFLSGGSSFFILGRAVL 950 (1470)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~-----~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~ 950 (1470)
.+...+.|.+.-.++.... .++.++.....+.-++++....+ .+..........+..++.++++++.++|.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a--~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAA--FVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHHH--HHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666553333222 22223333344555554432221 1111122334455666777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000475 951 LATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVF 1030 (1470)
Q Consensus 951 ~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~ 1030 (1470)
+.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...+.+.++.++.++.|+..+|.+.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt 291 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT 291 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHH
Q 000475 1031 PLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1110 (1470)
Q Consensus 1031 ~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~ 1110 (1470)
.+.+..+++..... ++|-+.-|++.+...++-+...+...|.+.+++|+|+|+.|++..++|.+.+++
T Consensus 292 lv~~i~~P~v~~~~------------~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~ 359 (716)
T KOG0058|consen 292 LVTLIVVPIVALVA------------KIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLRE 359 (716)
T ss_pred HHHHHHhcHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHH
Confidence 66554444333322 566666667777777777788888999999999999999999999999888887
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000475 1111 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1189 (1470)
Q Consensus 1111 ~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sve 1189 (1470)
..+.........-.+....++.+++....+++. ......+.+++|..--.+.|...+...+.++...+.++.+.+.|.+
T Consensus 360 ~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~ 439 (716)
T KOG0058|consen 360 VLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 (716)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 665554443333333333444444433333332 3445677889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh
Q 000475 1190 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF 1268 (1470)
Q Consensus 1190 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~ 1268 (1470)
|+.||++.++.-+.. ....|. .-+|.|+|+||+|.|+.. ..+||||+||+|+|||.||+||||||||||++++|.
T Consensus 440 rvFel~dr~P~i~~~---G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~ 515 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLT---GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL 515 (716)
T ss_pred HHHHHhccCCCCCCC---Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999976654422 111222 468999999999999643 236999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccC
Q 000475 1269 RVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLD 1347 (1470)
Q Consensus 1269 rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLd 1347 (1470)
|+|+|++|+|++||+||++++.+.||++||+|.|||+||+|||||||... ...+||||.+|.++++.+|||.++|+|+|
T Consensus 516 rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~ 595 (716)
T KOG0058|consen 516 RFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYN 595 (716)
T ss_pred HhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccc
Confidence 99999999999999999999999999999999999999999999999865 46899999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEE
Q 000475 1348 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1427 (1470)
Q Consensus 1348 t~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL 1427 (1470)
|.|||.|..|||||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+|||||+||+.+|+|+|+
T Consensus 596 T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi 675 (716)
T KOG0058|consen 596 TVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVI 675 (716)
T ss_pred cccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecChhHHhhcCCChHHHHHHHHHhhc
Q 000475 1428 DEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460 (1470)
Q Consensus 1428 ~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~~~ 1460 (1470)
++|+|+|.|+|+||+++++|.|++|+++.....
T Consensus 676 ~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred cCCeEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 999999999999999999999999999876433
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-81 Score=783.12 Aligned_cols=546 Identities=25% Similarity=0.371 Sum_probs=475.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhcccc-cccc--ccch-hhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 894 PVILLCQVLFQALQMGSNYWIAWATDEK-RKVS--REQL-IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1470)
Q Consensus 894 ~~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~--~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ 969 (1470)
.-+++..++.+++.+++++...+..|.- +..+ ...+ ...+++.++...++.++|++++...+.+....+-.+++++
T Consensus 157 ~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~h 236 (709)
T COG2274 157 FEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRH 236 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455566777888888888888766521 2222 2222 2334445566778899999999999999999999999999
Q ss_pred HhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 000475 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTA 1049 (1470)
Q Consensus 970 vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 1049 (1470)
+++.|++||+++++|++++|+. |++.|...+...+...+..++..+..+++|++++|+++++.+..++++..+.
T Consensus 237 ll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~----- 310 (709)
T COG2274 237 LLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT----- 310 (709)
T ss_pred HHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 9999999999999999999985 7888888999888888889999999999999999999887776665554333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 000475 1050 RCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRI 1129 (1470)
Q Consensus 1050 ~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1129 (1470)
-+..+..|+..+......+...++..|++.|+.|||+.+.|.++..++.+..+++.+..+.......|.....
T Consensus 311 -------~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
T COG2274 311 -------LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK 383 (709)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2223334455555556667788899999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCC
Q 000475 1130 NLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNS 1208 (1470)
Q Consensus 1130 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1208 (1470)
.++..+....++++ +.....+.++.|..-...+..-.+...+..++..+.++.....+.||+.+..+.|+|.+. +.
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~ 460 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DK 460 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---cc
Confidence 88777665555554 334456677777777777777788899999999999999999999999999999988642 22
Q ss_pred CCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC
Q 000475 1209 RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1288 (1470)
Q Consensus 1209 ~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i 1288 (1470)
.+...|+.+|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++
T Consensus 461 ~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 461 TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 24455677899999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1289 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1289 ~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
++++||++|++||||++||+||||||+...+ +.+|||+++|++.+|++|||.++|.||||+|+|+|.|||||||||++|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999998764 578899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
||||+++|+||+||||||+||++||+.|++.|.+...+||+|+||||++++++||||+|||+|+|+|.|+|+||++. +|
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred hHHHHHHHH
Q 000475 1448 SFSKLVAEF 1456 (1470)
Q Consensus 1448 ~f~~lv~~~ 1456 (1470)
.|+++++..
T Consensus 700 ~y~~l~~~q 708 (709)
T COG2274 700 LYARLYQQQ 708 (709)
T ss_pred hHHHHHhcc
Confidence 999988753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=762.20 Aligned_cols=543 Identities=27% Similarity=0.382 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhccccc-c-ccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000475 896 ILLCQVLFQALQMGSNYWIAWATDEKR-K-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1470)
Q Consensus 896 ~~l~~~~~~~~~~~~~~wl~~~~~~~~-~-~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~a 973 (1470)
.+++.++...+....++++.+..+.-. . .....+...++++.++..++.++..+.....+.+...+++.++++++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 19 AILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444555666666666665443211 1 11222334444455556666677777777888999999999999999999
Q ss_pred CcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 000475 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHY 1053 (1470)
Q Consensus 974 p~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~ 1053 (1470)
|+++|+++++|++++|+++|++.++..+......+..+++.+++.+++++..+|.+.++++...+++.+..
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~--------- 169 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVL--------- 169 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------
Confidence 99999999999999999999999999988875556667888888899999999988776655544433322
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 000475 1054 LLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLF 1133 (1470)
Q Consensus 1054 ~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1133 (1470)
.++.+..+...+......+.+.+.+.|+++|+.+||+|+.++...+++.+..+...+...........+.....++.
T Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 170 ---SLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446666666677788999999999999999999999988777777776666555444444444433334443
Q ss_pred HHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCC
Q 000475 1134 NFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSP 1212 (1470)
Q Consensus 1134 ~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1212 (1470)
.+....+... ......+.++.|.....+.|...+...+..+......++....+.||+.++.+.+++... ... +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~ 321 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--P 321 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--C
Confidence 3333322222 222345567888888899999999999999999999999999999999999987554221 111 1
Q ss_pred CCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH
Q 000475 1213 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1213 ~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~ 1292 (1470)
..+..|.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.|||+||+++++.+
T Consensus 322 ~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 322 LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 34556889999999999864 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccEEEccCCCCCcccHHHhcCcCCC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1293 LRSRLSIIPQDPMLFQGTVRTNLDPLEQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~gTIR~NLdp~~~-~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
||++|++|||||.||+||||+||+++.+ ++|||+++|+++++++|++.++|+|+||.|||+|.+||||||||+|||||+
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal 480 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999865 799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~ 1451 (1470)
+|+|+|||||||||++|++||+.|++++++..+++|+|+||||++|+.+||+|+|||+|+|+|+|+|+||+++ +|.|++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~ 559 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYAR 559 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999988889999999999999999999999999999999999999986 899999
Q ss_pred HHHHHH
Q 000475 1452 LVAEFL 1457 (1470)
Q Consensus 1452 lv~~~~ 1457 (1470)
|+++..
T Consensus 560 l~~~~~ 565 (567)
T COG1132 560 LYQAQG 565 (567)
T ss_pred HHHHhh
Confidence 998765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-76 Score=750.17 Aligned_cols=560 Identities=18% Similarity=0.221 Sum_probs=438.3
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc--cccc---ccchhhhHHHhhhHHHHHHHHHHHHHH
Q 000475 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1470)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1470)
+.++.|++...+.. .+.+++.++...+....++.+.+..+.- ++.+ ...++..++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666543332 2333444555556666666666544311 1111 112233344444556667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000475 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1470)
Q Consensus 953 ~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1032 (1470)
..+.+...+++.++++++++.|+++|++.++|++++|+++|++.++..+...+..++..++.+++.+++++.++|++.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998888888888888888888899999988766
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHH
Q 000475 1033 FLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1112 (1470)
Q Consensus 1033 ~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~ 1112 (1470)
++.++++.+++. .++.+..++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..++..
T Consensus 169 ~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~ 236 (588)
T PRK11174 169 LLGTAPLIPLFM------------ALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFR 236 (588)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHH
Confidence 554444333322 33334445555555556677889999999999999999999999999988888877
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1113 CVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLA---------GLAATYGLNLNVLQAWVIWNLCNVEN 1183 (1470)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------gl~l~y~l~l~~~~~~~i~~~~~le~ 1183 (1470)
+..........+......++..+...+++++......+.++.|.. -.++.+...+...+..+...+.++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~ 316 (588)
T PRK11174 237 QRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQ 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 766555444444444444443332222211111111233333321 12224444556667777788888999
Q ss_pred hhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHH
Q 000475 1184 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1263 (1470)
Q Consensus 1184 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL 1263 (1470)
...+.+|+.++.+.|++.+.. ...+. ..+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||
T Consensus 317 ~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL 392 (588)
T PRK11174 317 AVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSL 392 (588)
T ss_pred HHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999876543211 11111 11234679999999887655 569999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhc
Q 000475 1264 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQD 1342 (1470)
Q Consensus 1264 l~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~l 1342 (1470)
+++|.|++ |++|+|.+||+|+++++.+++|++|+||||||+||+|||||||..+ ++++|+|+++|++.|++++++.++
T Consensus 393 ~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~l 471 (588)
T PRK11174 393 LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLL 471 (588)
T ss_pred HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhc
Confidence 99999999 9999999999999999999999999999999999999999999887 469999999999999999999999
Q ss_pred ccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC
Q 000475 1343 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDND 1422 (1470)
Q Consensus 1343 p~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~D 1422 (1470)
|+|+||.|||+|.|||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||
T Consensus 472 p~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD 551 (588)
T PRK11174 472 PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551 (588)
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1423 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1423 rIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
+|+||++|+++|.|+|+||+++ ++.|++|++...
T Consensus 552 ~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 552 QIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred EEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999999999999999975 689999987653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-76 Score=760.10 Aligned_cols=552 Identities=22% Similarity=0.304 Sum_probs=447.6
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc-cccc---ccchhhhHHHhhhHHHHHHHHHHHHHHHH
Q 000475 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVS---REQLIGVFIFLSGGSSFFILGRAVLLATI 954 (1470)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~ 954 (1470)
.++.|++.... .+...+++.++...+.+..+++.....+.- ...+ ....+..++++.++..++.+++..+....
T Consensus 151 ~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (711)
T TIGR00958 151 RLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYT 228 (711)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554322 233344455566667777777776544311 1111 11233445555666777788888889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000475 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFL 1034 (1470)
Q Consensus 955 ~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 1034 (1470)
+.+...+++.++++++++.|++||++++.|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.++++
T Consensus 229 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l 308 (711)
T TIGR00958 229 MARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876655
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHH
Q 000475 1035 VILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1114 (1470)
Q Consensus 1035 p~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~ 1114 (1470)
..+++.+++. ..+.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.
T Consensus 309 ~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 376 (711)
T TIGR00958 309 INLPLVFLAE------------KVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQL 376 (711)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 5444443333 3333334444444445566778999999999999999999999999999888877666
Q ss_pred HHHHHhH---hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 1115 TFHNCGT---MEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1191 (1470)
Q Consensus 1115 ~~~~~~~---~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi 1191 (1470)
....... ..|....+..+..+++.. +.......+.+++|.+..++.|...+...+..+...+.++.+...+.+|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~il~--~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri 454 (711)
T TIGR00958 377 NKRKALAYAGYLWTTSVLGMLIQVLVLY--YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKV 454 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443322 233333222222222111 12223446788999888889999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000475 1192 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1192 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl 1270 (1470)
.++.+.+++.+.. . ....++..|.|+|+||+|+|+.+ .+++|+|+||+|+|||++||||+||||||||+++|+|+
T Consensus 455 ~~~l~~~~~~~~~---~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 455 FEYLDRKPNIPLT---G-TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred HHHhCCCCCCCCC---C-CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 9999876554311 1 11123456889999999999753 34799999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000475 1271 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349 (1470)
Q Consensus 1271 ~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~ 1349 (1470)
++|++|+|.+||+|+++++.+++|++|++|||||.+|+|||||||... .+.+|+++++++++++++++++++|+|+||.
T Consensus 531 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 531 YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 999999999999999999999999999999999999999999999865 4688999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeC
Q 000475 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1350 v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1429 (1470)
+||+|.+||||||||+|||||++++|+|||||||||+||++|++.|++ ....+++|+|+||||++++..||+|+||++
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKK 688 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999 334579999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHH
Q 000475 1430 GKVLEYDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1430 G~vvE~g~p~~Ll~~~~s~f~~lv 1453 (1470)
|+|+|.|+|+||+++ ++.|++|+
T Consensus 689 G~ive~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 689 GSVVEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred CEEEEeeCHHHHHhC-CCchHhcC
Confidence 999999999999975 57898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-75 Score=751.69 Aligned_cols=540 Identities=21% Similarity=0.271 Sum_probs=445.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhcccc-ccccc---cchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 895 VILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1470)
Q Consensus 895 ~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~v 970 (1470)
.++++.++...+.+..++.+....+.- +..+. ..+...++++.++..++.+++.++....+.+...+++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666665544321 11111 11233444455566777888899999999999999999999999
Q ss_pred hcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 000475 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTAR 1050 (1470)
Q Consensus 971 l~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 1050 (1470)
++.|++||++.++|++++|++ |++.+...+...+...+...+..++.+++++.++|++.++++.++++.+.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~------ 292 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVT------ 292 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 999999999999999999997 7888888888777777777777777888888899988776665544433332
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 000475 1051 CHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRIN 1130 (1470)
Q Consensus 1051 ~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1130 (1470)
.+..+...+..+ ......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......
T Consensus 293 --~~~~~~~~~~~~----~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (686)
T TIGR03797 293 --LVLGLLQVRKER----RLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNA 366 (686)
T ss_pred --HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222233 33344556789999999999999999999999999999999988888887777777776666
Q ss_pred HHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCC
Q 000475 1131 LLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSR 1209 (1470)
Q Consensus 1131 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~ 1209 (1470)
++..+...++.++ ......+.++.|.+-.+.++...+...+..+...+.++.....+.+|+.++.+.|+|.+. ...
T Consensus 367 ~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~ 443 (686)
T TIGR03797 367 VLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKT 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcC
Confidence 6554433333322 233346778888777777788888888888999999999999999999999987766431 111
Q ss_pred CCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC
Q 000475 1210 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1289 (1470)
Q Consensus 1210 ~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~ 1289 (1470)
+ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++
T Consensus 444 ~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 444 D--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred C--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1 11345789999999999866678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1290 l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
.+++|++|++|||||.+|+|||||||..+..++|+++++|++.+++++++.++|+|+||.+||+|.+||||||||++|||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999987668999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
|++++|+||+||||||+||++|++.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y 678 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999999986 6899999999999999999999999999999999999974 7899
Q ss_pred HHHHHH
Q 000475 1450 SKLVAE 1455 (1470)
Q Consensus 1450 ~~lv~~ 1455 (1470)
++|+++
T Consensus 679 ~~l~~~ 684 (686)
T TIGR03797 679 AQLARR 684 (686)
T ss_pred HHHHHh
Confidence 999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-74 Score=735.96 Aligned_cols=544 Identities=24% Similarity=0.357 Sum_probs=440.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhcccc-cccc--ccch---hhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 896 ILLCQVLFQALQMGSNYWIAWATDEK-RKVS--REQL---IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1470)
Q Consensus 896 ~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~--~~~~---l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ 969 (1470)
.+++.++...+....++++.+..+.. +..+ .... +.+++++.++..++.+++.+.....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666667777776655421 1111 1111 1223333445556667778888888999999999999999
Q ss_pred HhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 000475 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTA 1049 (1470)
Q Consensus 970 vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 1049 (1470)
+++.|+++|+..+.|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.++++..+++.+.+.
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~----- 182 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVM----- 182 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999888888888888888888888887655443322222111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHH-HHH
Q 000475 1050 RCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL-CLR 1128 (1470)
Q Consensus 1050 ~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~ 1128 (1470)
..+.+..+...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+. ...
T Consensus 183 -------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (592)
T PRK10790 183 -------VIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255 (592)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333334444456677899999999999999999999999998887777666555444333332 222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCC
Q 000475 1129 INLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNS 1208 (1470)
Q Consensus 1129 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1208 (1470)
..++..+...++.+.......+.++.|.......|...+...+..+...+.++++...+.+|+.++.+.+++.+. ..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~ 332 (592)
T PRK10790 256 LSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC
Confidence 333333222222122112346778888888888888899999999999999999999999999999886654321 11
Q ss_pred CCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC
Q 000475 1209 RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1288 (1470)
Q Consensus 1209 ~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i 1288 (1470)
..++..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|++++
T Consensus 333 ---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 333 ---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred ---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC
Confidence 122345789999999999754 4699999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1289 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1289 ~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+.+.+|++|+||||||.+|+||||+||.++++++|++++++++++|+++++.++|+|+||.++|+|.+||||||||++||
T Consensus 409 ~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 409 SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred CHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCCh
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~ 1448 (1470)
|||+++|+||+||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~ 567 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGR 567 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCH
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999999986 689
Q ss_pred HHHHHHHHHhh
Q 000475 1449 FSKLVAEFLRR 1459 (1470)
Q Consensus 1449 f~~lv~~~~~~ 1459 (1470)
|++|++.....
T Consensus 568 y~~l~~~~~~~ 578 (592)
T PRK10790 568 YWQMYQLQLAG 578 (592)
T ss_pred HHHHHHHHhhh
Confidence 99999876543
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=753.01 Aligned_cols=560 Identities=21% Similarity=0.263 Sum_probs=455.6
Q ss_pred hHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc-cccccc---chhhhHHHhhhHHHHHHHHHHHHH
Q 000475 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSRE---QLIGVFIFLSGGSSFFILGRAVLL 951 (1470)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~---~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1470)
.++.++.+++...+. ...++++.++..++.+..++.+....+.- +..... .+...++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGA--LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666644322 22333444555566666666666544311 111111 223334444555667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
...+.+...+++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.+++++.++|++.+
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 297 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL 297 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 5688778777888888888888888889999998877
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1111 (1470)
Q Consensus 1032 ~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1111 (1470)
+.+.++++.+++. .++.+..+...+......+...+++.|+++|+.+||+++.|+.+.+++.+..++.
T Consensus 298 i~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 298 IGIAFAAINVLAL------------QLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 7665555544333 2233333344444445566788999999999999999999999999999888888
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000475 1112 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVER 1190 (1470)
Q Consensus 1112 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveR 1190 (1470)
.+..+.......|......++..+...++.++ ......+.++.|.+..+.++...+...+..+...+.++.....+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666666665554433333222 33345677888888888888888888889999999999999999999
Q ss_pred HHHHhcCCCCCccccCC--C-CCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHH
Q 000475 1191 ILQFTNIPSEAPLVIKN--S-RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1267 (1470)
Q Consensus 1191 i~~~~~~~~E~~~~~~~--~-~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L 1267 (1470)
+.++.+.|+|.+..... . ...+.++..|.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|
T Consensus 446 i~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred HHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999887765321100 0 01111345688999999999987667799999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhccccc
Q 000475 1268 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLL 1346 (1470)
Q Consensus 1268 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gL 1346 (1470)
+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||..++ +++|+++++|++++++++++.++|+|+
T Consensus 526 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl 605 (710)
T TIGR03796 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGY 605 (710)
T ss_pred hcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcc
Confidence 9999999999999999999999999999999999999999999999998764 689999999999999999999999999
Q ss_pred CccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEE
Q 000475 1347 DAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLV 1426 (1470)
Q Consensus 1347 dt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlv 1426 (1470)
||.++|+|.|||||||||++||||++++|+||+||||||+||++|++.|.+.|++ .++|+|+||||++++.+||||+|
T Consensus 606 ~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iiv 683 (710)
T TIGR03796 606 DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIV 683 (710)
T ss_pred cceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999987 58999999999999999999999
Q ss_pred EeCCEEEEecChhHHhhcCCChHHHHH
Q 000475 1427 LDEGKVLEYDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1427 L~~G~vvE~g~p~~Ll~~~~s~f~~lv 1453 (1470)
|++|+|+|.|+|++|+++ ++.|++|+
T Consensus 684 l~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 684 LERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 999999999999999974 68899886
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=751.40 Aligned_cols=558 Identities=21% Similarity=0.272 Sum_probs=448.8
Q ss_pred hHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc-ccccc---cchhhhHHHhhhHHHHHHHHHHHHH
Q 000475 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLL 951 (1470)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1470)
++..++.|++...+. +..++++.++..++.++.++++....|.- +.... ..+...++++.+...++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566676654332 23344455566667777777777655421 11111 1122233334445566778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
...+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+...+...+...+..++.+++.+++++.++|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888887777666666677777777777778888988776
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1111 (1470)
Q Consensus 1032 ~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1111 (1470)
+++..+++++.+. ..+.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++.
T Consensus 300 i~l~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 367 (708)
T TIGR01193 300 LSLLSIPVYAVII------------ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDY 367 (708)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6554444433322 2333444555555666677788999999999999999999999999998888877
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000475 1112 SCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVER 1190 (1470)
Q Consensus 1112 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveR 1190 (1470)
.+..+.......+......++..+...++ .+.......+.++.|.+..+.++...+...+..+...+.++.....+++|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 447 (708)
T TIGR01193 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNR 447 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666554444443333333332222211 12223335778888888888888888888889999999999999999999
Q ss_pred HHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000475 1191 ILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1191 i~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl 1270 (1470)
+.++.+.|+|.+.. ....+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+
T Consensus 448 i~~~l~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 448 LNEVYLVDSEFINK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred HHHHHcCCCccccc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 99999887765321 1112234456899999999999744 5699999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC--CCCCHHHHHHHHHHcCcHHHHHhcccccCc
Q 000475 1271 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1348 (1470)
Q Consensus 1271 ~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt 1348 (1470)
++|++|+|++||+|+++++.+++|++|+||||||.+|+|||||||..+ .+++|++++++++.+++++++.++|+||||
T Consensus 524 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt 603 (708)
T TIGR01193 524 FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603 (708)
T ss_pred CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence 999999999999999999999999999999999999999999999876 468999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEe
Q 000475 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1428 (1470)
Q Consensus 1349 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~ 1428 (1470)
.++|+|.+||||||||++||||++++|+||+||||||+||++|++.|++.|++. +++|+|+||||++++..||+|+||+
T Consensus 604 ~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~ 682 (708)
T TIGR01193 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLD 682 (708)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999974 7899999999999999999999999
Q ss_pred CCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1429 EGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1429 ~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
+|+++|.|+|++|+++ +|.|++|++
T Consensus 683 ~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 683 HGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 9999999999999985 689999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=725.85 Aligned_cols=505 Identities=22% Similarity=0.294 Sum_probs=435.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHH
Q 000475 935 FLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQ 1014 (1470)
Q Consensus 935 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~ 1014 (1470)
++.++..++.+++.++....+.+....++..+++++++.|.++|++...|++++|+++|++.+...+...+..++..++.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777788888999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhh
Q 000475 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1094 (1470)
Q Consensus 1015 ~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf 1094 (1470)
+++.+++++..+|+++++++..+++.+++. .+..+..++..+......+...+++.|.++|+.+||+|
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~ 220 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAI------------RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIF 220 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 999999999999987776655544433322 22223333334444455677889999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHH
Q 000475 1095 NQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAW 1173 (1470)
Q Consensus 1095 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~ 1173 (1470)
+.++.+.+++.+..+...+..........|.....+++..+...+++++ ......+.+++|...++.++...+...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~ 300 (582)
T PRK11176 221 GGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKS 300 (582)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887777777777776666655544333332 233445788999988888888888899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEE
Q 000475 1174 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1253 (1470)
Q Consensus 1174 ~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIV 1253 (1470)
+...+..+.+...+.+|+.++.+.++|.+. ... ...|..+.|+++||+|+|+++.+++|+|+||+|++||++|||
T Consensus 301 l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIv 375 (582)
T PRK11176 301 LTNVNAQFQRGMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALV 375 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEE
Confidence 999999999999999999999987665321 111 112345689999999999876567999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC--CCCCHHHHHHHHH
Q 000475 1254 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVIN 1331 (1470)
Q Consensus 1254 GrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~ 1331 (1470)
|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||||++|+||||+||... ++++|++++++++
T Consensus 376 G~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~ 455 (582)
T PRK11176 376 GRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAAR 455 (582)
T ss_pred CCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 3489999999999
Q ss_pred HcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 000475 1332 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITV 1411 (1470)
Q Consensus 1332 ~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~I 1411 (1470)
++++++++.++|+|+||.+||+|.+||||||||++|||||+++|+||+||||||+||++|++.|.+.|++..++||+|+|
T Consensus 456 ~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~V 535 (582)
T PRK11176 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535 (582)
T ss_pred HhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred ecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1412 AHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1412 AHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
|||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+++..
T Consensus 536 tHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 536 AHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQF 580 (582)
T ss_pred ecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHh
Confidence 999999999999999999999999999999985 589999987653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-73 Score=735.23 Aligned_cols=549 Identities=21% Similarity=0.246 Sum_probs=443.9
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc-cccccc---chhhhHHHhhhHHHHHHHHHHHHHH
Q 000475 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSRE---QLIGVFIFLSGGSSFFILGRAVLLA 952 (1470)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~---~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1470)
+..++.+++...+. +..++++.++..++..+.++.+....|.. +..+.. .+...++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPL--YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666543322 23344445556666667777766554321 111111 1222333344456677788889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000475 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1470)
Q Consensus 953 ~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1032 (1470)
..+.+...+++.++++++++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999888887777777777777788888889887766
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHH
Q 000475 1033 FLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1112 (1470)
Q Consensus 1033 ~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~ 1112 (1470)
.+..+++++.+. .++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..
T Consensus 291 ~l~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 358 (694)
T TIGR03375 291 PLVAIPLILLPG------------LLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALA 358 (694)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHH
Confidence 554444433322 22333344444444556678889999999999999999999999999999888877
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 1113 CVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1191 (1470)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi 1191 (1470)
+..+.......+......++..+...++.+ .......+.++.|..-.+.++...+...+..+...+.++.....+.+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri 438 (694)
T TIGR03375 359 RSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSL 438 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666555555544444444332222222 2233446778888888888888888888899999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC
Q 000475 1192 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1192 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~ 1271 (1470)
.++.+.|+|.+.. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 439 ~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 439 DELMQLPVERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred HHHHcCCCCCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999887764321 1111112345789999999999766667999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccc
Q 000475 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1350 (1470)
Q Consensus 1272 ~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v 1350 (1470)
+|++|+|.+||+|+++++++++|+++++|||||.+|+|||||||.... +++|+|+++|++++++++++.++|+|+||.+
T Consensus 516 ~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 999999999999999999999999999999999999999999999775 4899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCC
Q 000475 1351 AEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEG 1430 (1470)
Q Consensus 1351 ~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G 1430 (1470)
+|+|.|||||||||++||||++++|+||+||||||+||++|++.|++.|++..+++|+|+||||++++..||+|+||++|
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEEecChhHHhhc
Q 000475 1431 KVLEYDSPRQLLED 1444 (1470)
Q Consensus 1431 ~vvE~g~p~~Ll~~ 1444 (1470)
+++|.|+|+||+++
T Consensus 676 ~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 676 RIVADGPKDQVLEA 689 (694)
T ss_pred EEEeeCCHHHHHHH
Confidence 99999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=716.13 Aligned_cols=555 Identities=20% Similarity=0.245 Sum_probs=437.4
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc---ccc---cccc--hhhhHHHhhhHHHHHHHHHHHHH
Q 000475 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKV---SREQ--LIGVFIFLSGGSSFFILGRAVLL 951 (1470)
Q Consensus 880 y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~---~~~---~~~~--~l~vy~~l~~~~~~~~~~~~~~~ 951 (1470)
++.|++...+.. .+.+++.++..++.++.++.+.|..+.. ... .... ....+.+++++..++.++..++.
T Consensus 7 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 7 FLKLYKRHWFML--SLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555433222 2333344455555556666666554321 110 0011 11123334445566677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
...+.+...+++.++++++++.|+.||++.+.|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 164 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLAL 164 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988888999999999999999999998877
Q ss_pred HHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISI-WYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1110 (1470)
Q Consensus 1032 ~~ip~~~~~~-~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~ 1110 (1470)
+++.++++.. .+. .++.+..+...+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..++
T Consensus 165 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 232 (574)
T PRK11160 165 TLGGILLLLLLLLP------------LLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQ 232 (574)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHH
Confidence 6543332221 111 223333444445555667778889999999999999999999999999999988
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Q 000475 1111 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWVIWNLCNVENKMISVE 1189 (1470)
Q Consensus 1111 ~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~-l~l~~~~~~~i~~~~~le~~~~sve 1189 (1470)
+.+..........+.....+++..+...++.++......+.++.|..-.++.|. +.....+..+...+.++.....+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ 312 (574)
T PRK11160 233 WLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASAR 312 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766666666555565554443333332222224555555544444443 2233344555667778888899999
Q ss_pred HHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhc
Q 000475 1190 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1190 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~r 1269 (1470)
|+.++.+.|+|.+.. ...++ .+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|
T Consensus 313 ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 313 RINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred HHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 999999876653211 11111 13457899999999997654569999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCc
Q 000475 1270 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1348 (1470)
Q Consensus 1270 l~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt 1348 (1470)
+++|++|+|.+||+|+++++.+++|++++++||||.+|+||||||+... .+.+|++++++++++++++++.+ |+||||
T Consensus 389 ~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 389 AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred CCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 9999999999999999999999999999999999999999999999865 36899999999999999999999 999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEe
Q 000475 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1428 (1470)
Q Consensus 1349 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~ 1428 (1470)
.+||+|.+||||||||++||||++++|+||+||||||++|++|++.|++.|++..+++|+|+||||++++.+||+|++|+
T Consensus 468 ~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 468 WLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1429 EGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1429 ~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
+|+++|.|+|+||+++ ++.|++|++
T Consensus 548 ~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 548 NGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999975 789999876
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-72 Score=712.77 Aligned_cols=542 Identities=22% Similarity=0.313 Sum_probs=459.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHhcccc---cccc-ccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000475 897 LLCQVLFQALQMGSNYWIAWATDEK---RKVS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1470)
Q Consensus 897 ~l~~~~~~~~~~~~~~wl~~~~~~~---~~~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ 972 (1470)
+++.++..++.....++++...+.. .... ...+...++++.+...++.+++.++....+.+....++..+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 99 (571)
T TIGR02203 20 GVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG 99 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555555555666665433211 1111 11223345556666677778888999999999999999999999999
Q ss_pred CCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000475 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCH 1052 (1470)
Q Consensus 973 ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 1052 (1470)
.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++.++++.+++.
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~-------- 171 (571)
T TIGR02203 100 LPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILM-------- 171 (571)
T ss_pred CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999998887776666555443
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 000475 1053 YLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLL 1132 (1470)
Q Consensus 1053 ~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l 1132 (1470)
.++.+..++..+......++..+++.|+++|+.+||+++.++++.+++.+..++..+..........+.....+++
T Consensus 172 ----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (571)
T TIGR02203 172 ----RRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247 (571)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666778899999999999999999999999999999999998888877777777776666665
Q ss_pred HHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCC
Q 000475 1133 FNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1211 (1470)
Q Consensus 1133 ~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~ 1211 (1470)
..+...+++++ ......+.+++|.+..+.++...+...+..+...+.++.+...+.+|+.++.+.++|.+. ...+.
T Consensus 248 ~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~ 324 (571)
T TIGR02203 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAI 324 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCC
Confidence 55433332222 233456788999998888999999999999999999999999999999999987665431 11111
Q ss_pred CCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH
Q 000475 1212 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1291 (1470)
Q Consensus 1212 ~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1291 (1470)
+ +..+.|+++||+|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+
T Consensus 325 ~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 325 E--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred C--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 1 23568999999999976556799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC--CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
++|++++|+||||.+|+||||+||..+. +.+|++++++++++++++++.++|+||||.++|+|.+||||||||+||||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999998763 68999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
|++++|+||+||||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++++++ ++.|
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~ 561 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLY 561 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHH
Confidence 999999999999999999999999999999998899999999999999999999999999999999999999975 6789
Q ss_pred HHHHHHH
Q 000475 1450 SKLVAEF 1456 (1470)
Q Consensus 1450 ~~lv~~~ 1456 (1470)
++++.+.
T Consensus 562 ~~~~~~~ 568 (571)
T TIGR02203 562 AQLHNMQ 568 (571)
T ss_pred HHHHHHh
Confidence 9887754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=720.89 Aligned_cols=561 Identities=21% Similarity=0.280 Sum_probs=454.7
Q ss_pred hHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhcccc-cccc--c-cchhhhHHHhhhHHHHHHHHHHHHH
Q 000475 876 KWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVS--R-EQLIGVFIFLSGGSSFFILGRAVLL 951 (1470)
Q Consensus 876 ~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~-~~~~--~-~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1470)
++..++.+++...+. +..++++.++..++.+..++.+....+.- +..+ . ..+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666543322 22333444555556666677666544321 1111 1 1223334444555677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
...+.+...+++.++++++++.|++||++.+.|++++|+ +|++.+...+...+..++..++.+++.++++++++|++.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999888877777777777777777888889998877
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1111 (1470)
Q Consensus 1032 ~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1111 (1470)
+++..++++..+. .+..+..+...+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++.
T Consensus 283 i~l~~~~~~~~i~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 283 VVIGSLVCYALLS------------VFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 6654444433322 1111222222333334456778999999999999999999999999999999988
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000475 1112 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVER 1190 (1470)
Q Consensus 1112 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveR 1190 (1470)
.+..+.......+.....+++..+...++.++ ......+.++.|.+..+.++...+...+..+...+.+++....+.+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666676666666555443333222 23344677888888888888888888899999999999999999999
Q ss_pred HHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000475 1191 ILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1191 i~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl 1270 (1470)
+.++.+.|+|.+.. ...+.+ +..|.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+
T Consensus 431 i~~~l~~~~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 431 LGDILNSPTEPRSA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred HHHHHcCCCCccCC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999887764311 111111 23578999999999987666799999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000475 1271 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349 (1470)
Q Consensus 1271 ~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~ 1349 (1470)
++|++|+|.+||+|+++++.+++|+++++|||||.+|+|||||||... .+++|++++++++++++++++.++|+|+||.
T Consensus 507 ~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~ 586 (694)
T TIGR01846 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE 586 (694)
T ss_pred CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcE
Confidence 999999999999999999999999999999999999999999999875 4689999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeC
Q 000475 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1350 v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1429 (1470)
++|+|.+||||||||++||||++++|+||+||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++
T Consensus 587 i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 587 VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHHHHH
Q 000475 1430 GKVLEYDSPRQLLEDNSSSFSKLVAEF 1456 (1470)
Q Consensus 1430 G~vvE~g~p~~Ll~~~~s~f~~lv~~~ 1456 (1470)
|+++|.|+|++|+++ +|.|++|+++.
T Consensus 667 G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 667 GQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999985 68999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=659.85 Aligned_cols=510 Identities=21% Similarity=0.273 Sum_probs=424.4
Q ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHH
Q 000475 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1470)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~ 1008 (1470)
+++..+++.++..+....+.......+.++...++.++++++.+.+..+-...|+|++.+.++.-++.++..+...+...
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666667777777788888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhh
Q 000475 1009 AFALIQLLSIIILMSQAAWQVFPL---FLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESI 1085 (1470)
Q Consensus 1009 ~~~~~~~~~~~~v~~~~~~~~~~~---~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl 1085 (1470)
+.+.+..+.+++.++..+|...++ ..|++++++.+. ...++...+.....-..+.+||-+.+
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv---------------g~~a~~~s~~~~~~~~~ls~~FLD~L 186 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV---------------GLAAKDASEKQFSALARLSGHFLDRL 186 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999976554 446655544322 11122333333344456789999999
Q ss_pred hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhh-cC-CCcCHHHHHHHHHH
Q 000475 1086 AGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL-PR-SAIDPSLAGLAATY 1163 (1470)
Q Consensus 1086 ~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~gl~l~y 1163 (1470)
+|+.|+|+|+..+...++..+.-.++.+..+.....+---+..+|++..+.++.+++..... .. |.++-...-+++..
T Consensus 187 rGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiL 266 (559)
T COG4988 187 RGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLIL 266 (559)
T ss_pred cChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHH
Confidence 99999999999999999999998888888887777776667888888887777666654322 22 33433333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEE
Q 000475 1164 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCT 1243 (1470)
Q Consensus 1164 ~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~ 1243 (1470)
+.-+-..+.-+-..+....+...+.+.+..+.+.|.+.+... ......|.....|+.+|++++|+++. ++++|+||+
T Consensus 267 APEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t 343 (559)
T COG4988 267 APEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLT 343 (559)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeE
Confidence 444555555555566666677788999999998776644211 11123333345667779999998764 799999999
Q ss_pred eeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCC
Q 000475 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHS 1322 (1470)
Q Consensus 1244 i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~s 1322 (1470)
++||+++||||+||||||||+++|.|+.+|++|+|.+||+|+.+++.+++|+++++|||+|++|+|||||||...+ +.+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s 423 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS 423 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 489
Q ss_pred HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 000475 1323 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE 1402 (1470)
Q Consensus 1323 d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~ 1402 (1470)
|+||+++++++++.++++. |+|||+.+||+|.+|||||+||++||||++++++++++|||||+||.+||+.|++.|.+.
T Consensus 424 ~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHh
Q 000475 1403 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458 (1470)
Q Consensus 1403 ~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~ 1458 (1470)
++++|||+||||++.+.++|+|+|||+|+++|.|+|++|.++ ++.|++|+++...
T Consensus 503 ~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred HhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999985 7899999988654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-71 Score=643.72 Aligned_cols=492 Identities=22% Similarity=0.314 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 945 LGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ 1024 (1470)
Q Consensus 945 ~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~ 1024 (1470)
++.-+.......+.-..++.++|+++...+..-...-..|+++||+..|++.+|+.+-..+...+.++...++.++.+.+
T Consensus 76 Y~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f 155 (573)
T COG4987 76 YVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSF 155 (573)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333445677788888999999999988888889999999999999999999999999998888888888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHH
Q 000475 1025 AAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRS 1104 (1470)
Q Consensus 1025 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~ 1104 (1470)
.+|++.+.+...+.+...+ +.-.+.+..|...+--...++.+.++|.|.+.|....+.||.+++|.+.+
T Consensus 156 ~~~~~Alll~~~ll~~lli-----------~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l 224 (573)
T COG4987 156 FSIPLALLLGLILLLLLLI-----------IPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTAL 224 (573)
T ss_pred hhHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHH
Confidence 8888765544333332221 11333445666666666778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000475 1105 HSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF-LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVI-WNLCNVE 1182 (1470)
Q Consensus 1105 ~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i-~~~~~le 1182 (1470)
....+...+..........|-...+.++..+.+. ..++.......|..+...+.+++.-.+.....+.-+. ..+.++.
T Consensus 225 ~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lg 304 (573)
T COG4987 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLG 304 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhh
Confidence 9999999999999999999999999988887766 3333333344554442222222222122222222233 4567888
Q ss_pred HhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCC-cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHH
Q 000475 1183 NKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSG-KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1261 (1470)
Q Consensus 1183 ~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g-~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKS 1261 (1470)
...-|.+|+.+..+.++|.... . +.-|..+ .++++||+|+|+.+.+++|+|+||++++||||||+||||||||
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~~---~---~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTFP---D---EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred HHHHHHHHHhhhccCCcccCCC---c---cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHH
Confidence 8889999999988766665422 1 1112222 7999999999998888999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHH
Q 000475 1262 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVR 1340 (1470)
Q Consensus 1262 TLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~ 1340 (1470)
|++++|.|.++|++|+|..+|.+++.++.+++|+.|++++|.+.+|+||+|+||... .+.||||+|++|+++||.++++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999764 4689999999999999999999
Q ss_pred hcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000475 1341 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1420 (1470)
Q Consensus 1341 ~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~ 1420 (1470)
+.|+||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1421 NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1421 ~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
||||+|||+|+++|.|+|.+|++ ++|.|++|++
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 99999999999999999999998 5799999865
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-73 Score=715.30 Aligned_cols=514 Identities=22% Similarity=0.308 Sum_probs=413.6
Q ss_pred cchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHH
Q 000475 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1470)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~ 1006 (1470)
..+...|+.++++..+..++....+...+.|...+++.+.+++++|++++|||++..|.+..|+++|++.+.+.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 45666777888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhh
Q 000475 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIA 1086 (1470)
Q Consensus 1007 ~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~ 1086 (1470)
.++..+.++++.+++.++..|++.++++++.++..... ..+.+..-.+...+...-+.--+...|++.
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g------------~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~ 218 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAG------------GLLARFLSKLTEKEQEAYAKAGSIAEEVIS 218 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888776665543332 111111111222222333445567889999
Q ss_pred hhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHH-HhhcCCCcCHHHHHHHHH
Q 000475 1087 GATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFL---VLIIL-VTLPRSAIDPSLAGLAAT 1162 (1470)
Q Consensus 1087 G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~---~~~~~-~~~~~~~~~~~~~gl~l~ 1162 (1470)
+++|+.+|+-|++..+++.+.++...+...... -|.++-..+...++... ..++. ..+..+..++|.+...+.
T Consensus 219 ~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~ 295 (1228)
T KOG0055|consen 219 SIRTVYAFNGEKKEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFF 295 (1228)
T ss_pred hhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe
Confidence 999999999999999999998888766544322 22222222221111111 11111 112233444544332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCC-Ccceeeee
Q 000475 1163 YGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGIT 1241 (1470)
Q Consensus 1163 y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vLk~is 1241 (1470)
+.+.-...+......+..+.+...|..+|.+.++..++.....+..++ .-..+|.|+|+||+|+|+... .++|+|+|
T Consensus 296 ~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~s 373 (1228)
T KOG0055|consen 296 SVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVS 373 (1228)
T ss_pred ehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeE
Confidence 222222333334445566677778899999988644332111111111 113579999999999996432 27999999
Q ss_pred EEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-C
Q 000475 1242 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-Q 1320 (1470)
Q Consensus 1242 ~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~ 1320 (1470)
|+|++||.|||||+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+||+.... +
T Consensus 374 l~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD 453 (1228)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998765 7
Q ss_pred CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 000475 1321 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400 (1470)
Q Consensus 1321 ~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~ 1400 (1470)
.|++|+.+|++.++.++||.++|+|+||.|||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|+
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd 533 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALD 533 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHh
Q 000475 1401 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458 (1470)
Q Consensus 1401 ~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~ 1458 (1470)
+..+|+|.|+|||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++||+-...
T Consensus 534 ~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 534 KASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQEL 590 (1228)
T ss_pred HhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999986 999999987653
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=697.21 Aligned_cols=550 Identities=19% Similarity=0.243 Sum_probs=436.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhcccccccc-ccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000475 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1470)
Q Consensus 893 ~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl 971 (1470)
+.+++++.++..++....++++.+..+.-.... ...++..++++.++..+..+...........+...++..+++++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777777888776554211111 1111222232223333333333333344445555556669999999
Q ss_pred cCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000475 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARC 1051 (1470)
Q Consensus 972 ~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 1051 (1470)
+.|+.+|++.+.|++++|+++|++.+.......+..++..++..++.+++++..+|++.++++.+++++..+.
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~------- 173 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLIT------- 173 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999988777777777777777777777888888887766655554443333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 000475 1052 HYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1131 (1470)
Q Consensus 1052 ~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1131 (1470)
.++.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..........+.....++
T Consensus 174 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK13657 174 -----TLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA 248 (588)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666677888999999999999999999999999999888888777766555555555444444
Q ss_pred HHHHHHHHHHH-HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCC
Q 000475 1132 LFNFAFFLVLI-ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1210 (1470)
Q Consensus 1132 l~~~~~~~~~~-~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1210 (1470)
+..+...++.+ .......+.+++|.+..+..+...+...+..+...+.++.....+.+|+.++.+.+++.+.. ...+
T Consensus 249 ~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~ 326 (588)
T PRK13657 249 ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAI 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCC
Confidence 43333222222 23334567888998888888888888888888888888888899999999988765442211 1111
Q ss_pred CCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH
Q 000475 1211 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1290 (1470)
Q Consensus 1211 ~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1290 (1470)
+.. +..+.|+++||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.
T Consensus 327 ~~~-~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 327 DLG-RVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR 404 (588)
T ss_pred CcC-CCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH
Confidence 111 234679999999999744 469999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++|++|+|+||||.+|+||||+||... ++.+|++++++++.+++++++.++|+|+||.++++|.+||||||||+||||
T Consensus 405 ~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 405 ASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484 (588)
T ss_pred HHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999876 468999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
||+++|+||+||||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y 563 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRF 563 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChH
Confidence 999999999999999999999999999999988789999999999999999999999999999999999999975 6899
Q ss_pred HHHHHHHHhh
Q 000475 1450 SKLVAEFLRR 1459 (1470)
Q Consensus 1450 ~~lv~~~~~~ 1459 (1470)
++|+++....
T Consensus 564 ~~l~~~~~~~ 573 (588)
T PRK13657 564 AALLRAQGML 573 (588)
T ss_pred HHHHHHhhcc
Confidence 9999866433
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=693.09 Aligned_cols=506 Identities=20% Similarity=0.249 Sum_probs=405.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhccccccccccchhh-h---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000475 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIG-V---FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1470)
Q Consensus 896 ~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~-v---y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl 971 (1470)
.+++.++..++.++.++.+++..+..........+. . .+++.++..++.++..++....+.+...+++.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555666666666666554211111111111 1 112333445566677777778889999999999999999
Q ss_pred cCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000475 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARC 1051 (1470)
Q Consensus 972 ~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 1051 (1470)
+.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++++..++++.++.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~------- 170 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVA------- 170 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999888888888888889999999999988776654443332221
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 000475 1052 HYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1131 (1470)
Q Consensus 1052 ~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1131 (1470)
..++.+..+...+......+.+.+++.|+++|+.+||+|+.|+.+.+++.+..++..+..........+......+
T Consensus 171 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (529)
T TIGR02868 171 ----PLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLL 246 (529)
T ss_pred ----HHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0223333344444445566888999999999999999999999999999998888877766665555554444444
Q ss_pred HHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCC
Q 000475 1132 LFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1210 (1470)
Q Consensus 1132 l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1210 (1470)
+..+...++.++ ......+.++.|.....+.|...+...+..+...+.++.+...+.+|+.++.+.++|.+.. +...+
T Consensus 247 ~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~ 325 (529)
T TIGR02868 247 AAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCC
Confidence 443333322222 2233467788888888888888888888888888999999999999999999876653321 11111
Q ss_pred CCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH
Q 000475 1211 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1290 (1470)
Q Consensus 1211 ~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1290 (1470)
...+|..+.|+|+||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-Q 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-H
Confidence 12234567899999999997654 599999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++|++++||||||++|+|||||||..+ ++++|+++++|+++++++|++.++|+|+||.+||+|.+||||||||+||||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999985 468999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1415 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl 1415 (1470)
|++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999988999999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-73 Score=639.39 Aligned_cols=506 Identities=22% Similarity=0.354 Sum_probs=413.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHH
Q 000475 939 GSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018 (1470)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~ 1018 (1470)
++.++..+|+++......-+.+.+-.++++|+....+.|.-...+|+++.-..+..+.+. .+........-.++.+...
T Consensus 271 gsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 271 GSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 346677788888888888899999999999999999999999999988877776666555 3333333333334444333
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchH
Q 000475 1019 IIL-MSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1097 (1470)
Q Consensus 1019 ~~v-~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e 1097 (1470)
++. ....+||+.+++..++.++.+..+..+ .+--+..|.+...+.+++ ..-.+++-+.+|+|-|++|
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iT--------eWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae 417 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKIT--------EWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAE 417 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeee--------hhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCch
Confidence 332 233567776666666655554432111 222223333333333333 3446889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1098 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIW 1176 (1470)
Q Consensus 1098 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~ 1176 (1470)
+...+++.+.++++++..+........+...-+.+..+..... +++++....+..+.|...+..+|.+++-+.++|+-.
T Consensus 418 ~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT 497 (790)
T KOG0056|consen 418 DYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGT 497 (790)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHH
Confidence 9999999999999998877766665555555554444433332 222333346667788888999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCC
Q 000475 1177 NLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1256 (1470)
Q Consensus 1177 ~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrT 1256 (1470)
.+..++++.+-.|++.+..+.++|. .+.+..+|---.+|+|+|+||+|.|+|+.| ||+||||+++||+.||+||||
T Consensus 498 ~YR~iQ~nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~S 573 (790)
T KOG0056|consen 498 YYRSIQKNFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPS 573 (790)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCC
Confidence 9999999999999999998755543 222222222335899999999999998865 999999999999999999999
Q ss_pred CCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCc
Q 000475 1257 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHL 1335 (1470)
Q Consensus 1257 GSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L 1335 (1470)
|+||||++++|||+++.++|.|.|||+||+.+..+.||+.||+||||.+||+.||..|+... ..++|||+.+|.+.+++
T Consensus 574 GaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~I 653 (790)
T KOG0056|consen 574 GAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQI 653 (790)
T ss_pred CCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999865 46899999999999999
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000475 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRI 1415 (1470)
Q Consensus 1336 ~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl 1415 (1470)
+|-|...|+|++|.|||+|-.||||||||+++||++||+|.|++||||||+||..||+.||.++.+..+++|.|+||||+
T Consensus 654 HdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRL 733 (790)
T KOG0056|consen 654 HDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRL 733 (790)
T ss_pred HHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHhhcc
Q 000475 1416 PTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1461 (1470)
Q Consensus 1416 ~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~~~~ 1461 (1470)
+||.++|.|+|+++|+|+|.|+|+||+++++|.|++|++......+
T Consensus 734 STivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~ 779 (790)
T KOG0056|consen 734 STIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGK 779 (790)
T ss_pred hheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999965554433
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=695.00 Aligned_cols=561 Identities=21% Similarity=0.298 Sum_probs=451.1
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccc---ccccc-ccchhhhHHHhhhHHHHHHHHHHHHHHH
Q 000475 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDE---KRKVS-REQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1470)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~---~~~~~-~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 953 (1470)
+.++.|++...+.. .+.+++.++..++.++.++.+....+. ..... ...++..++++.+...++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455655432222 223334455555556666655544332 11111 1122333444444556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000475 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1470)
Q Consensus 954 ~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 1033 (1470)
.+.+....++..+++++++.|.++|+....|++++|+++|++.++..+...+..++..++.+++.+++++.++|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888988898877665
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHH
Q 000475 1034 LVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1113 (1470)
Q Consensus 1034 ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~ 1113 (1470)
+..+++.+.+. .++.+..+...+.....+....+++.|.++|+.+||+|+.++.+.+++.+..++..+
T Consensus 165 l~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 232 (576)
T TIGR02204 165 LLAVPLVLLPI------------LLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYE 232 (576)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 54433332222 223333444455555666778899999999999999999999999999998888777
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 1114 VTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192 (1470)
Q Consensus 1114 ~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~ 1192 (1470)
..........|+.....++..+...+..+ .......+.++.|....+..|...+...+..+...+.++.+...+.+|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~ 312 (576)
T TIGR02204 233 AARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLI 312 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555566555544443332222222 22334567788888888888888889999999999999999999999999
Q ss_pred HHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCC-CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC
Q 000475 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1193 ~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~ 1271 (1470)
++.+.++|.+... ...+..+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|++
T Consensus 313 ~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 313 ELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred HHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 9988765532111 11112234457899999999997533 57999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccc
Q 000475 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1350 (1470)
Q Consensus 1272 ~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v 1350 (1470)
+|++|+|.+||+|+++++.+++|++++|+||||.+|+||||+||.... +.+|++++++++++++.+++.++|+|+||++
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i 470 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYL 470 (576)
T ss_pred CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCcee
Confidence 999999999999999999999999999999999999999999998754 5789999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCC
Q 000475 1351 AEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEG 1430 (1470)
Q Consensus 1351 ~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G 1430 (1470)
+|+|.+||||||||++||||++++|+||+||||||++|++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|
T Consensus 471 ~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEecChhHHhhcCCChHHHHHHH
Q 000475 1431 KVLEYDSPRQLLEDNSSSFSKLVAE 1455 (1470)
Q Consensus 1431 ~vvE~g~p~~Ll~~~~s~f~~lv~~ 1455 (1470)
+++|.|+|++|++ +++.|++|++.
T Consensus 551 ~~~~~g~~~~l~~-~~~~~~~l~~~ 574 (576)
T TIGR02204 551 RIVAQGTHAELIA-KGGLYARLARL 574 (576)
T ss_pred EEEeeecHHHHHH-cCChHHHHHhh
Confidence 9999999999987 57899998764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=680.19 Aligned_cols=562 Identities=20% Similarity=0.269 Sum_probs=437.4
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccc-cchhhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000475 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR-EQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958 (1470)
Q Consensus 880 y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~-~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 958 (1470)
++.|++...+ .+.+.+++.++..++.++.++.+.+..+.-...+. ..++..++++.+...+..++..........+.
T Consensus 10 l~~~l~~~k~--~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 10 ALSYLNVHKN--RVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554322 22334445556666777777776655542111111 11122222222222233333333344455555
Q ss_pred HHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000475 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038 (1470)
Q Consensus 959 s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~ 1038 (1470)
..+++.++++++++.|++||++.++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+.++++.+++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666799999999999999999999999999999999998888777777777788888888888999998877665555
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1039 ISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1118 (1470)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1118 (1470)
++.++. +++.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..+..
T Consensus 168 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (585)
T TIGR01192 168 LYILIA------------KLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPV 235 (585)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 544433 44445556666666667778899999999999999999999999998888888776665554
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 000475 1119 CGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI 1197 (1470)
Q Consensus 1119 ~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~ 1197 (1470)
.....+......++..+...++.++ ......+.++.|.+..+..|...+...+..+...+.++.....+.+|+.+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 315 (585)
T TIGR01192 236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4333333333333333222222222 233446778888888888888888888888888888888899999999998876
Q ss_pred CCCCccccCCCCCCCCCC-CCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000475 1198 PSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276 (1470)
Q Consensus 1198 ~~E~~~~~~~~~~~~~wp-~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G 1276 (1470)
+++.+. ... +..++ ..+.|+++||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|
T Consensus 316 ~~~~~~---~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 316 VFQREE---PAD-APELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred CccccC---Ccc-CCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 544221 111 11122 34679999999999754 3589999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCC
Q 000475 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1355 (1470)
Q Consensus 1277 ~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~ 1355 (1470)
+|.+||+|+.+++.+++|++++++||||.+|++|+|+||... .+.+|++++++++.+++++++.++|+|+||.++++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 999999999999999999999999999999999999999875 4578999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEe
Q 000475 1356 NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1356 nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~ 1435 (1470)
+||||||||++|||||+++|+||+||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHHHHhhcc
Q 000475 1436 DSPRQLLEDNSSSFSKLVAEFLRRTS 1461 (1470)
Q Consensus 1436 g~p~~Ll~~~~s~f~~lv~~~~~~~~ 1461 (1470)
|+|++|+++ ++.|+++++.+....+
T Consensus 551 g~~~~l~~~-~~~y~~l~~~~~~~~~ 575 (585)
T TIGR01192 551 GSFQELIQK-DGRFYKLLRRSGLLTN 575 (585)
T ss_pred CCHHHHHHC-CChHHHHHHhCccccC
Confidence 999999975 6899999987755444
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-69 Score=681.41 Aligned_cols=509 Identities=21% Similarity=0.249 Sum_probs=415.0
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHH
Q 000475 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011 (1470)
Q Consensus 932 vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~ 1011 (1470)
+++++.++..++.+++.++....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+...+...+..++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~ 120 (569)
T PRK10789 41 TMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDS 120 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666777788899999999999999999999999999999999999999999987666666666666
Q ss_pred HHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHH
Q 000475 1012 LIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1090 (1470)
Q Consensus 1012 ~~~~~~~~~v~-~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~t 1090 (1470)
++..++.++++ +.++|++.++++..+++..++. +.+.+..++..+......+.+.+++.|++.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ 188 (569)
T PRK10789 121 LVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMI------------KRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRM 188 (569)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 55555555554 4678877665554444333322 2233333333444445567788999999999999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCcCHHHHHHHHHHHHHHHH
Q 000475 1091 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-IILVTLPRSAIDPSLAGLAATYGLNLNV 1169 (1470)
Q Consensus 1091 IRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~gl~l~y~l~l~~ 1169 (1470)
||+|+.|+++.+++.+..++..+..+.......+..........+...++. +.......+.++.|.+..+..|...+..
T Consensus 189 ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~ 268 (569)
T PRK10789 189 IKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIW 268 (569)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999888877766665544444433333333222222111 1223344677888888777788888877
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcE
Q 000475 1170 LQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKK 1249 (1470)
Q Consensus 1170 ~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~Gek 1249 (1470)
.+..+...+.++.....+.+|+.++.+.++|.+. ...+.+ +..+.|+++|++|+|+++.+++|+|+||+|+|||+
T Consensus 269 pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~ 343 (569)
T PRK10789 269 PMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQM 343 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCE
Confidence 7888888889999999999999999987654321 111111 23568999999999986555799999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHH
Q 000475 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWE 1328 (1470)
Q Consensus 1250 vgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~ 1328 (1470)
+||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||+|.+|+||+|+||... .+++|+++++
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~ 423 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEH 423 (569)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 4689999999
Q ss_pred HHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEE
Q 000475 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTV 1408 (1470)
Q Consensus 1329 aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TV 1408 (1470)
+++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+||+||||||+||+++++.|++.|++..+++|+
T Consensus 424 ~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~ti 503 (569)
T PRK10789 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTV 503 (569)
T ss_pred HHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHHh
Q 000475 1409 ITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLR 1458 (1470)
Q Consensus 1409 I~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~~ 1458 (1470)
|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|++....
T Consensus 504 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 504 IISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred EEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999999999999999999999975 5899999876543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=672.71 Aligned_cols=514 Identities=21% Similarity=0.264 Sum_probs=414.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHhcccc--cccc---ccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000475 897 LLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1470)
Q Consensus 897 ~l~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl 971 (1470)
+++.++..++....++.+.+..+.- +... ...++..+++++++..++.+++.++....+.+...+++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666555321 1111 1123344455556667778888888899999999999999999999
Q ss_pred cCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000475 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARC 1051 (1470)
Q Consensus 972 ~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 1051 (1470)
+.|..+|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..+++..++.
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~------- 161 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM------- 161 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999888888888888888888888888889887665544433322221
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 000475 1052 HYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1131 (1470)
Q Consensus 1052 ~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1131 (1470)
.++.+..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+.....++
T Consensus 162 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 162 -----ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222223333333445567889999999999999999999999999988888777766666556666555555
Q ss_pred HHHHHHHHHH-HHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCC
Q 000475 1132 LFNFAFFLVL-IILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1210 (1470)
Q Consensus 1132 l~~~~~~~~~-~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1210 (1470)
+..+...++. +.......+.++.|....+..|...+...+..+...+..+.....+.+|+.++.+.+++... . .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~-~ 311 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----K-A 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----C-c
Confidence 5544333222 22222236677888777777777777777888888899999999999999999975543211 1 1
Q ss_pred CCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH
Q 000475 1211 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1290 (1470)
Q Consensus 1211 ~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1290 (1470)
+...+..+.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.
T Consensus 312 ~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 312 PVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391 (529)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH
Confidence 11122346899999999997655579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++|++++||||||.+|+|||||||... .+.+|+++++++++++++++++++|+||||.++|+|.+||||||||++|||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999875 467999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEE
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1427 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL 1427 (1470)
|++++|+|++||||||+||++|++.|++.|++..+++|+|+||||++++..||+|+||
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=621.38 Aligned_cols=510 Identities=23% Similarity=0.339 Sum_probs=391.0
Q ss_pred cchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHH
Q 000475 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1470)
Q Consensus 927 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~ 1006 (1470)
...+..|.+..+++.+|..++.+.+++...++-+....+.+.+.+...+++|.+..+|.+.+....-...+...+.-.+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999998877766666666555555444
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhh
Q 000475 1007 GLAFALIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESI 1085 (1470)
Q Consensus 1007 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl 1085 (1470)
.++..++.+......+ .-..+.+.++++..++.|..+.+..+ ++=-+--++..+.+ ....+..-|++
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t--------~~Rn~fR~~~N~Ad----n~as~~~~dsL 221 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVT--------RWRNRFRKAMNNAD----NSASRRAYDSL 221 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeeh--------hHHHHHHHHHHhhh----hHHHHHHHHHH
Confidence 4444444433332222 12233333333333333322221111 11111122333333 33445677999
Q ss_pred hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcCHHHHHHHHHHH
Q 000475 1086 AGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYG 1164 (1470)
Q Consensus 1086 ~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~gl~l~y~ 1164 (1470)
.+..+||+|+.|++..+++...+.++.+......+....+.+.-..+++.....+.+.. --...+..+.+..-+.-+..
T Consensus 222 ~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~ 301 (591)
T KOG0057|consen 222 INYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLL 301 (591)
T ss_pred hhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHH
Confidence 99999999999999999999999888877666555544444444444433322222221 11123344555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEe
Q 000475 1165 LNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1244 (1470)
Q Consensus 1165 l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i 1244 (1470)
.++...+..+-..+.++-..+.-.+-.....+. +. ...+. +++--+..|.|+|+||++.|.|+ ++||+|+||+|
T Consensus 302 ~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~--~~--~i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I 375 (591)
T KOG0057|consen 302 FQLSLPLNFLGSVYRELRQALTDMRTLFILLEV--DE--DIQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTI 375 (591)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhh--hh--hhhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEe
Confidence 677777777777777776666555444333211 11 01111 11222345779999999999876 45999999999
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCCH
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSD 1323 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd 1323 (1470)
++||||||||++||||||++++|+|+++ .+|+|+|||+||+++.++.+|+-||+||||..||++||-+|+-..+ ..+|
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ 454 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASD 454 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999998764 6899
Q ss_pred HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 000475 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403 (1470)
Q Consensus 1324 ~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~ 1403 (1470)
||+.+++++++++|.+.++|+|++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|....
T Consensus 455 eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~ 534 (591)
T KOG0057|consen 455 EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM 534 (591)
T ss_pred HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 000475 1404 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1456 (1470)
Q Consensus 1404 ~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~ 1456 (1470)
+++|+|+|+||++++++||+|++||+|+|+|+|+|+||++ +++.|+.++...
T Consensus 535 ~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 535 SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 9999999999999999999999999999999999999998 788887776543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=666.98 Aligned_cols=538 Identities=19% Similarity=0.246 Sum_probs=421.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1470)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1470)
++...+.+++.+++..++.++..++..+.|+++..+++.+..+.. .... .+.+++++++..++..++.....+...+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-PREA-LLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888889999999999999999999999997642211 1111 22334444555556666666666777789
Q ss_pred HHHHHHHHHHHHHHHhcccccCC---CCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 346 GIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1470)
Q Consensus 346 g~rir~~L~~~iy~K~L~ls~~~---~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~ 421 (1470)
+.++...+...+|+|.++++... .++|+++|.+++|++++.+++. .+..++...+.+++++++++ .++|..+++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVF-PINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999987543 3899999999999999998864 45566666555555554444 3454555656
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000475 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL----RLREIERDSLKKYLYT 497 (1470)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~----~~R~~E~~~l~~~~~~ 497 (1470)
++++++...+...+.++.++..++.++..+++.+.+.|.++|+++||.|+||+.+.+++. +.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677788888999999999999999999999999999999999998888774 4444554444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLT---------SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568 (1470)
Q Consensus 498 ~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~---------~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~ 568 (1470)
..+..++... +. +.++.++.+.+. +.++ +..++.++.+...+..|+..++..+..+.++++|.+||.+
T Consensus 250 ~~~~~~~~~~-~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222211 11 122233333333 3333 3445565667778889999999999999999999999999
Q ss_pred HhcccCCCCCCCCCC-CCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCC
Q 000475 569 FIKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 569 fL~~~e~~~~~~~~~-~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~ 646 (1470)
+++.++.++.....+ .......|+++|++|.|+++ .+.|+| ||++++|+++||+|+||||||||+++|+|+
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 998765221111111 11123469999999877633 468999 999999999999999999999999999999
Q ss_pred CcCCCCcEEEECC-------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcc
Q 000475 647 IPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1470)
Q Consensus 647 ~~~~~G~~i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t 712 (1470)
+ |++|++ .++| .++||||+|++|++||+|||.+|++ .++++++++++.|+++++++.+|+|++|
T Consensus 400 ~-p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 400 L-PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred C-CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 9 899986 8887 4799999999999999999999965 7899999999999999999999999999
Q ss_pred cccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000475 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1470)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 792 (1470)
.+||+|.+|||||||||+||||+++||+|+||||||||||+++++++.+ .+....+++|+|+|||+++.+..||+|++|
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999976 566677899999999999999999999999
Q ss_pred eCCEEEEecChhhHHhhchhHHHHHHHH
Q 000475 793 KDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1470)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1470)
++|+|+++|+++|+++ .+..+.++...
T Consensus 557 ~~G~i~e~G~~~eL~~-~~~~y~~l~~~ 583 (588)
T PRK11174 557 QDGQIVQQGDYAELSQ-AGGLFATLLAH 583 (588)
T ss_pred eCCeEeecCCHHHHHh-cchHHHHHHHH
Confidence 9999999999999997 55566665543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-66 Score=621.63 Aligned_cols=545 Identities=23% Similarity=0.312 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHSS-YHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1470)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~-~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1470)
+.+.+..|+.+..+.++.++.......-|.++.++++.+.. .+.... .+....++++.+...+...+-...+.+...|
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888888888999888888899999999998876 222011 1213333333333333333333444455566
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000475 345 IGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1470)
Q Consensus 345 ~g~rir~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~-~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~ 423 (1470)
+..|+|..+...+-+.-... .+...+|+++|+++.|++.+.+.+ .++.+..-..+|.+.++.+++. +.|..+++.++
T Consensus 219 v~~rlR~~lF~sil~QdiaF-FD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~i 296 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAF-FDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhh-hccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHH
Confidence 66666666655554444332 233479999999999999998776 4677777777888877776663 44466777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAF 503 (1470)
Q Consensus 424 ~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 503 (1470)
.+.+++.+...+++..++.-++..++..+-.+...|.|++||+||.|+-|+.-.++..+.=+.-.+.-+|-.....+...
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~ 376 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHh
Confidence 77788888889999999999999999999999999999999999999999865554443322222222222222222111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-C
Q 000475 504 L--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI-T 580 (1470)
Q Consensus 504 ~--~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~-~ 580 (1470)
. +......++++.+|.+++.++.+|++...+++.+-..+..++..+...++.++++..+.+|+.+|++.+++-+.. .
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~ 456 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT 456 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc
Confidence 1 112234567788899999999999999999999999999999999999999999999999999999987732221 1
Q ss_pred CCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC
Q 000475 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1470)
Q Consensus 581 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g 659 (1470)
..|. .-...|+|+|++|+||.+ ++.++++| ||+|+|||.||+|||+||||||+.++|+..|+|++|++ .++|
T Consensus 457 ~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I-llDG 529 (716)
T KOG0058|consen 457 LAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI-LLDG 529 (716)
T ss_pred cccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-EECC
Confidence 1222 345689999999999988 67889999 99999999999999999999999999999999999997 8887
Q ss_pred -------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 -------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
+||+|.|+|.+|++||+|||.+|.+ .++++.+++.+.+..++.+..+|+|++|.+||+|..|||||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 3799999999999999999999986 45677888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhh
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 805 (1470)
||||||||||++||.|+||||.|||||+++ +++.++.+....+++|||+|.|+++.++.||+|+++++|++++.|+++|
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHH
Confidence 999999999999999999999999999997 5666788888888999999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHh
Q 000475 806 LIADQNSELVRQMKAH 821 (1470)
Q Consensus 806 l~~~~~~~~~~~~~~~ 821 (1470)
+++..+..+.++++.+
T Consensus 689 Ll~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 689 LLSKPNGLYAKLVQRQ 704 (716)
T ss_pred HhhCcccHHHHHHHHh
Confidence 9996656777777654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=651.85 Aligned_cols=523 Identities=17% Similarity=0.156 Sum_probs=408.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHhccccc-cccc---cchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000475 897 LLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1470)
Q Consensus 897 ~l~~~~~~~~~~~~~~wl~~~~~~~~-~~~~---~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ 972 (1470)
+++.++..++.+..++.+....+.-. ..+. ..++.+++++.++..++.+++.++....+.+...+++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555566666666665543111 1111 1223334444455667777888888899999999999999999999
Q ss_pred CCcccccccChhhHHHHHhhchhhhhcchHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000475 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPY-RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARC 1051 (1470)
Q Consensus 973 ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~-~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 1051 (1470)
.|+.. .|...+++++|++.+...+.. .+..++..++.++ .+++++..+|++.++++..+++.+.+.
T Consensus 92 ~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~------- 158 (544)
T TIGR01842 92 ATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLA------- 158 (544)
T ss_pred CcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH-------
Confidence 99842 366789999999999887665 3444444444433 345677888887655443333222221
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 000475 1052 HYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINL 1131 (1470)
Q Consensus 1052 ~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1131 (1470)
.++.+..+...+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..+.......+......+
T Consensus 159 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 159 -----LLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred -----HHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222233333444556677889999999999999999999999999888888766665544444433333333
Q ss_pred HHHHHHHHHH-HHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCC
Q 000475 1132 LFNFAFFLVL-IILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1210 (1470)
Q Consensus 1132 l~~~~~~~~~-~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1210 (1470)
+..+...++. +.......+.+++|.+..+..+...+...+..+...+.++.....+.+|+.++.+.++|.+. ....
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~ 310 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCC
Confidence 3332222222 22233456788999888888888888888999999999999999999999999987655321 1111
Q ss_pred CCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH
Q 000475 1211 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1290 (1470)
Q Consensus 1211 ~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1290 (1470)
+ +..+.|+++|++|+|+++.+++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.
T Consensus 311 ~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 311 P---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred C---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 1 2346899999999997655579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+.+|++++++||||.+|++|+|+|+..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++|||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998654 48999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhh
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|++++|+|||||||||+||++|++.|.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999999875 6899999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-68 Score=600.28 Aligned_cols=487 Identities=22% Similarity=0.393 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChh---hHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHH-HH
Q 000475 948 AVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS---RILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL-MS 1023 (1470)
Q Consensus 948 ~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G---~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v-~~ 1023 (1470)
..++...+..+-+.+-.+.|.++....+.|.-+..+| |.+.|=++-++.+ +-..+...+-.++.+....++ ..
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i---~~~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETI---LRWILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHH---HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3455666777777888888999999999998877666 4555555554444 334444444444544433333 34
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHH
Q 000475 1024 QAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1103 (1470)
Q Consensus 1024 ~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~ 1103 (1470)
.++|++..+.+..+.++.++.+... .+-....|+++. +-+...+.-.+++-..+|++.|+.|+.+..+
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s--------~wr~~~rr~~n~----aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r 147 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVS--------DWRTDFRRLMNN----ADSDANAKAIDSLLNFETVKYFGNEEYEAVR 147 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeeh--------hhhHHHHHhhhh----hhhHHHHHHHHHHhhhhheeecCchhhhhhh
Confidence 5788888888777777766552211 222333344444 4445556677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1104 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVE 1182 (1470)
Q Consensus 1104 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le 1182 (1470)
+.+.++.+.++......+..||++.-..+........... ..-+..+..+.|...+.-.+..++..+++.+-..+.++.
T Consensus 148 ~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~ 227 (497)
T COG5265 148 YDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIR 227 (497)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence 9999999999999888888888887776665544333222 223456678888888889999999999999999999999
Q ss_pred HhhhHHHHHHHHhcCCCCCccccCCCCCCCCCC-CCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHH
Q 000475 1183 NKMISVERILQFTNIPSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1261 (1470)
Q Consensus 1183 ~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp-~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKS 1261 (1470)
+.....|+..+..+.+.|.. +....++-|| ..|.|.|+||+|.|.+..| +|+|+||++++|+++||||++|+|||
T Consensus 228 q~ltdme~mfdLl~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKs 303 (497)
T COG5265 228 QALTDMEKMFDLLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKS 303 (497)
T ss_pred HhhhhHHHHHHhhccchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHH
Confidence 99999999999888766643 2334455674 4688999999999998765 99999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHH
Q 000475 1262 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVR 1340 (1470)
Q Consensus 1262 TLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~ 1340 (1470)
|+..+|+|+|++++|.|.|||+||..+..+.||+.||+||||.+||+.|+..|+... ...|++|+++|++.++++++++
T Consensus 304 TI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~ 383 (497)
T COG5265 304 TILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ 383 (497)
T ss_pred HHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 4689999999999999999999
Q ss_pred hcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000475 1341 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1420 (1470)
Q Consensus 1341 ~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~ 1420 (1470)
.+|+|+||.|||.|-.||||||||+++||++|++|+||+||||||+||..||+.||.+|++..+++|.++||||++||.+
T Consensus 384 ~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~ 463 (497)
T COG5265 384 SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID 463 (497)
T ss_pred hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1421 NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1421 ~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
+|.|+||++|+|+|.|+|++|+++ +|.|++|+.
T Consensus 464 adeiivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 464 ADEIIVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CceEEEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 999999999999999999999986 899998874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=704.92 Aligned_cols=513 Identities=18% Similarity=0.234 Sum_probs=413.1
Q ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHH
Q 000475 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1470)
Q Consensus 929 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~ 1008 (1470)
+...+++++++..++.+++.++....+.+...+++.++++++++.|++|||..+.|++.+|++.|+..+...+...+..+
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~ 178 (1466)
T PTZ00265 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITI 178 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhh
Q 000475 1009 AFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGA 1088 (1470)
Q Consensus 1009 ~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~ 1088 (1470)
+..++.+++.++++++.+|.+.++++.++++.+.+. .++.+..+...+......+...+.+.|++.|+
T Consensus 179 ~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi 246 (1466)
T PTZ00265 179 FTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG------------VICNKKVKINKKTSLLYNNNTMSIIEEALVGI 246 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999998877665555443332 22222233334444444567788999999999
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH-HhhcC--------CCcCHHHHHH
Q 000475 1089 TTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPR--------SAIDPSLAGL 1159 (1470)
Q Consensus 1089 ~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~-~~~~~--------~~~~~~~~gl 1159 (1470)
.+||+|+.|+++.+++.+..+.+.+..+.......+......++..+..+++.++. ..... +.++++.+..
T Consensus 247 ~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~ 326 (1466)
T PTZ00265 247 RTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVIS 326 (1466)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHH
Confidence 99999999999999999888877766655444443333333333222222222211 11112 1234443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCccee
Q 000475 1160 AATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLK 1238 (1470)
Q Consensus 1160 ~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk 1238 (1470)
.+.+.+.....+..+...+..+.....|.+|+.+..+.+++.+.. .+ ....|..+.|+|+||+|+|+.. ..++|+
T Consensus 327 ~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~ 402 (1466)
T PTZ00265 327 ILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYK 402 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceec
Confidence 222323222333445566788889999999999999876553211 11 1112334589999999999743 236999
Q ss_pred eeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-cCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCc
Q 000475 1239 GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI-DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP 1317 (1470)
Q Consensus 1239 ~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I-DG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp 1317 (1470)
|+||+|++||++||||+||||||||+++|.|+++|++|+|.+ ||.|+++++.+++|++|++|||+|.||++||++||..
T Consensus 403 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~ 482 (1466)
T PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKY 482 (1466)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHh
Confidence 999999999999999999999999999999999999999999 5799999999999999999999999999999999975
Q ss_pred CC----------------------------------------------------------CCCHHHHHHHHHHcCcHHHH
Q 000475 1318 LE----------------------------------------------------------QHSDQEIWEVINKCHLAEIV 1339 (1470)
Q Consensus 1318 ~~----------------------------------------------------------~~sd~eI~~aL~~~~L~~~v 1339 (1470)
.. ..+|+++++|++++++++++
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i 562 (1466)
T PTZ00265 483 SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFV 562 (1466)
T ss_pred cCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHH
Confidence 21 35789999999999999999
Q ss_pred HhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh
Q 000475 1340 RQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT 1417 (1470)
Q Consensus 1340 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~t 1417 (1470)
.++|+|+||.++++|.+||||||||++|||||+++|+|||||||||+||++++..|++.|++.. +++|+|+||||+++
T Consensus 563 ~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 563 SALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred HhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999875 48999999999999
Q ss_pred hhhcCEEEEEeCC-----------------------------------------------EEEEecChhHHhhcCCChHH
Q 000475 1418 VIDNDLVLVLDEG-----------------------------------------------KVLEYDSPRQLLEDNSSSFS 1450 (1470)
Q Consensus 1418 i~~~DrIlvL~~G-----------------------------------------------~vvE~g~p~~Ll~~~~s~f~ 1450 (1470)
+..||+|+||++| +|+|+|+|+||+++++|.|+
T Consensus 643 i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~ 722 (1466)
T PTZ00265 643 IRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYY 722 (1466)
T ss_pred HHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHH
Confidence 9999999999986 59999999999987789999
Q ss_pred HHHHHHH
Q 000475 1451 KLVAEFL 1457 (1470)
Q Consensus 1451 ~lv~~~~ 1457 (1470)
.|++...
T Consensus 723 ~l~~~q~ 729 (1466)
T PTZ00265 723 TMINNQK 729 (1466)
T ss_pred HHHhhhc
Confidence 9996653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=626.74 Aligned_cols=465 Identities=25% Similarity=0.392 Sum_probs=356.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCC----CCcEEEECC-----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~----~G~~i~~~g----- 659 (1470)
.++++|.+.+|.... .....++| ||++.+||++||+|++||||||+.++|.|.+++. +|++ .++|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 588999998887541 22467889 9999999999999999999999999999999876 7886 5655
Q ss_pred ------------EeEEEcCCCC-CCC--ccHHHHHhc----CCCC-CHHH---HHHHHHHhcchHHHHhccCCCcccccC
Q 000475 660 ------------KKAYVPQSSW-IQT--GTIRENILF----GKDM-RQSF---YEEVLEGCALNQDIEMWADGDLSVVGE 716 (1470)
Q Consensus 660 ------------~~ayv~Q~~~-i~~--~Ti~eNI~~----g~~~-~~~~---y~~v~~~~~l~~d~~~l~~g~~t~ig~ 716 (1470)
.+||++|+|+ .+| .||.+-|.- .... .++. ..+.++..++.+.... +.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------cc
Confidence 3699999986 233 577776653 2212 1222 2233444444332221 45
Q ss_pred CCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEe
Q 000475 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1470)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~ 793 (1470)
..+.|||||||||.||+||..+|+++|+||||+|||+.+..+|.+. ++.+. .|.++|+||||++.+.+ ||+|+||+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 7889999999999999999999999999999999999999999864 54443 48899999999999876 99999999
Q ss_pred CCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcC
Q 000475 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELG 873 (1470)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 873 (1470)
+|++++.|+.++++.+....+...+-
T Consensus 230 ~G~iVE~G~~~~i~~~p~hpYT~~Ll------------------------------------------------------ 255 (539)
T COG1123 230 KGEIVETGPTEEILSNPQHPYTRGLL------------------------------------------------------ 255 (539)
T ss_pred CCEEEEecCHHHHHhccCCcccHHHH------------------------------------------------------
Confidence 99999999999988622111000000
Q ss_pred cchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHH
Q 000475 874 RVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1470)
Q Consensus 874 ~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 953 (1470)
. ..|.....
T Consensus 256 -----------~----------------------------------a~p~~~~~-------------------------- 264 (539)
T COG1123 256 -----------A----------------------------------AVPRLGDE-------------------------- 264 (539)
T ss_pred -----------h----------------------------------hCCCcccc--------------------------
Confidence 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000475 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1470)
Q Consensus 954 ~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 1033 (1470)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHH
Q 000475 1034 LVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1113 (1470)
Q Consensus 1034 ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~ 1113 (1470)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000475 1114 VTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQ 1193 (1470)
Q Consensus 1114 ~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~ 1193 (1470)
. +
T Consensus 265 -----------------------------------~----------------------------------------~--- 266 (539)
T COG1123 265 -----------------------------------K----------------------------------------I--- 266 (539)
T ss_pred -----------------------------------c----------------------------------------c---
Confidence 0 0
Q ss_pred HhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHH
Q 000475 1194 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1264 (1470)
Q Consensus 1194 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl 1264 (1470)
...+.+. +. +...-++++|++.+|.. +...+++||||++++||.+||||.||||||||.
T Consensus 267 -~~~~~~~--------~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTla 334 (539)
T COG1123 267 -IRLPRRG--------PL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA 334 (539)
T ss_pred -ccccccc--------cc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHH
Confidence 0000000 00 01235789999999973 124689999999999999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEcCEe--CCCCCHHHHhcccEEEccCCCCC---cccHHHhcC-cCCC---C----CHHHHHHHHH
Q 000475 1265 QALFRVVEPSGGRILIDGVD--ISMIGLQDLRSRLSIIPQDPMLF---QGTVRTNLD-PLEQ---H----SDQEIWEVIN 1331 (1470)
Q Consensus 1265 ~~L~rl~~p~~G~I~IDG~d--I~~i~l~~LR~~isiIpQdp~LF---~gTIR~NLd-p~~~---~----sd~eI~~aL~ 1331 (1470)
++|+|+++|++|+|.++|.| .+.-....+|+++-+|.|||+-. ..||+++|. |... . ..+.+-+.|+
T Consensus 335 r~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~ 414 (539)
T COG1123 335 RILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE 414 (539)
T ss_pred HHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHH
Confidence 99999999999999999977 33233556888999999999632 459999985 4321 1 2234777799
Q ss_pred HcCcHH-HHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEE
Q 000475 1332 KCHLAE-IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTV 1408 (1470)
Q Consensus 1332 ~~~L~~-~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TV 1408 (1470)
+++|.+ +..+.| ..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.+.. -+.|.
T Consensus 415 ~VgL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~ 483 (539)
T COG1123 415 LVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTY 483 (539)
T ss_pred HcCCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEE
Confidence 998875 333333 4599999999999999999999999999999999999999999988754 36999
Q ss_pred EEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 000475 1409 ITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455 (1470)
Q Consensus 1409 I~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~ 1455 (1470)
|+|||++..+.. ||||+||++|+|||.|+.++..+++...|.+...+
T Consensus 484 lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 484 LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999987 99999999999999999999999988888766544
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=634.47 Aligned_cols=542 Identities=23% Similarity=0.275 Sum_probs=449.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1470)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1470)
.+-++..++-+|+.+.-..+..++..++.++.|++.+.++|.+-...+ ...-+++++++.+..+++.+....-.|..
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888888899999999999999998765443 22234566677777777777766666778
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000475 343 NRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPA 418 (1470)
Q Consensus 343 ~r~g~rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~~~-~~~w~~pl~i~~~~~lL~~~lG~~~~ 418 (1470)
..++.|+...+...+|++.++++. ..+++|+++++++ |.++|.+++..- .....-.+-.++.+++++..=+ ..+
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~-~L~ 296 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSW-KLT 296 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 889999999999999999999975 3469999999998 999999997532 2222222222333334443334 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1470)
Q Consensus 419 l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1470)
+++++.+++.+.+..++.+..++..++.++...++.+...|.++||++||..+-|+.+..++++.-.+..+.-.+.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999888666666544444443
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000475 499 SAIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (1470)
Q Consensus 499 ~~~~~~~~~~--p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~ 576 (1470)
.......... -.-+.+++||++.++++.+|.|.++++.++...+..|+..+.+....+.+++++.+|+.+.++.|.+.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3333222222 22355688999999999999999999999999999999999999999999999999999999987632
Q ss_pred CCCC-CCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcE
Q 000475 577 KPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 577 ~~~~-~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~ 654 (1470)
+... ....+..+..|+++|++|+|+.+ +.+.|+| |++|++||++||+|+||||||||+|+|+|.++|.+|++
T Consensus 457 ~~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I 530 (709)
T COG2274 457 EGDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530 (709)
T ss_pred ccccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 2211 12223345679999999999876 3478999 99999999999999999999999999999999999996
Q ss_pred EEECC-------------EeEEEcCCCCCCCccHHHHHhcCCCCCH-HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 655 i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~-~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++| .++||+|++.+|+|||+|||.+|.|... +...++++..+.++++..+|.|.+|.+||+|.+
T Consensus 531 -~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 531 -LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred -EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 8887 3799999999999999999999998654 666667777788999999999999999999999
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1470)
||||||||++||||++++|+|++|||||||||+++++.+.++ +.....++|+|+|||+++.+..||+|+||++|+|+++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 999999999999999999999999999999999999988876 5556778999999999999999999999999999999
Q ss_pred cChhhHHhhchhHHHHHH
Q 000475 801 GKYEDLIADQNSELVRQM 818 (1470)
Q Consensus 801 g~~~~l~~~~~~~~~~~~ 818 (1470)
|+++|+++ .++.+.++.
T Consensus 689 gs~~ell~-~~g~y~~l~ 705 (709)
T COG2274 689 GSHEELLA-QGGLYARLY 705 (709)
T ss_pred CCHHHHHH-hcChHHHHH
Confidence 99999998 455555554
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=662.70 Aligned_cols=484 Identities=22% Similarity=0.356 Sum_probs=354.6
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|.... ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 4689999999996421 12467889 99999999999999999999999999999999999986 4432
Q ss_pred -------------------EeEEEcCCC--CCC-CccHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHHhccCC
Q 000475 660 -------------------KKAYVPQSS--WIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADG 709 (1470)
Q Consensus 660 -------------------~~ayv~Q~~--~i~-~~Ti~eNI~~g~~----~~~----~~y~~v~~~~~l~~d~~~l~~g 709 (1470)
.+|||+|+| -++ ..||+|||.++.. .+. ++..++++..++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 479999998 344 4699999998632 121 223334444443210
Q ss_pred CcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-c
Q 000475 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-A 786 (1470)
Q Consensus 710 ~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~ 786 (1470)
.........+|||||||||+|||||+.+|+++||||||++||+.+...+.+ +++.+. + |+|||+||||++++.. |
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 112456778999999999999999999999999999999999999888876 455443 3 7899999999999865 9
Q ss_pred CEEEEEeCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCc
Q 000475 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQ 866 (1470)
Q Consensus 787 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1470)
|+|++|++|++++.|+++++.......+...
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~~~~~~~~~~------------------------------------------------- 267 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFHAPQHPYTRA------------------------------------------------- 267 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhcCCCChhhhh-------------------------------------------------
Confidence 9999999999999998877653110000000
Q ss_pred cchhhcCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHH
Q 000475 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILG 946 (1470)
Q Consensus 867 ~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~ 946 (1470)
++.. .+...
T Consensus 268 ----------------l~~~----------------------------------~~~~~--------------------- 276 (623)
T PRK10261 268 ----------------LLAA----------------------------------VPQLG--------------------- 276 (623)
T ss_pred ----------------hhhc----------------------------------cCccc---------------------
Confidence 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000475 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026 (1470)
Q Consensus 947 ~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~ 1026 (1470)
.+ .|+ ..+.
T Consensus 277 ---------------------------~~-------~~~--------------~~~~----------------------- 285 (623)
T PRK10261 277 ---------------------------AM-------KGL--------------DYPR----------------------- 285 (623)
T ss_pred ---------------------------cc-------ccc--------------cCCc-----------------------
Confidence 00 000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHH
Q 000475 1027 WQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1106 (1470)
Q Consensus 1027 ~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1106 (1470)
+. |
T Consensus 286 ------------------------------~~-----------------~------------------------------ 288 (623)
T PRK10261 286 ------------------------------RF-----------------P------------------------------ 288 (623)
T ss_pred ------------------------------cc-----------------c------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000475 1107 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMI 1186 (1470)
Q Consensus 1107 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~ 1186 (1470)
. ..
T Consensus 289 ------------------------------------------~--~~--------------------------------- 291 (623)
T PRK10261 289 ------------------------------------------L--IS--------------------------------- 291 (623)
T ss_pred ------------------------------------------c--cc---------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHhcCCC-CCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC---------CCcceeeeeEEeeCCcEEEEECCC
Q 000475 1187 SVERILQFTNIPS-EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT---------LPMVLKGITCTFPGEKKIGVVGRT 1256 (1470)
Q Consensus 1187 sveRi~~~~~~~~-E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------~~~vLk~is~~i~~GekvgIVGrT 1256 (1470)
...+. +.+..... ..+ +...-++++|++++|+.. ...+|+||||+|++||++||+|+|
T Consensus 292 --------~~~~~~~~~~~~~~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~n 359 (623)
T PRK10261 292 --------LEHPAKQEPPIEQD-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGES 359 (623)
T ss_pred --------cccccccCcccccc-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCC
Confidence 00000 00000000 000 011248999999999621 135999999999999999999999
Q ss_pred CCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHhcccEEEccCC--CCCcc-cHHHhcCc-C---CCCC----
Q 000475 1257 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSRLSIIPQDP--MLFQG-TVRTNLDP-L---EQHS---- 1322 (1470)
Q Consensus 1257 GSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~isiIpQdp--~LF~g-TIR~NLdp-~---~~~s---- 1322 (1470)
|||||||+++|.|+.+|++|+|.++|.++...+.. .+|++|+||||+| .++.. |+++|+.. . +..+
T Consensus 360 GsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 360 GSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred CCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999999877643 4678999999998 36654 99999852 1 1111
Q ss_pred HHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 000475 1323 DQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401 (1470)
Q Consensus 1323 d~eI~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~ 1401 (1470)
++++.+.|+.+++. +.. +..+ ..||||||||++|||||+.+|++|||||||++||..+.+.|.+.|++
T Consensus 440 ~~~~~~~L~~~gL~~~~~-------~~~~----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 440 AARVAWLLERVGLLPEHA-------WRYP----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHcCCCHHHh-------hCCc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 24567788888874 332 2333 46999999999999999999999999999999999999999999987
Q ss_pred hc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH-HHH
Q 000475 1402 ET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK-LVA 1454 (1470)
Q Consensus 1402 ~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~-lv~ 1454 (1470)
.. .+.|||+|||+++.+.. ||||++|++|+|+|.|+++++++++...|.+ ++.
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 54 37899999999999976 9999999999999999999999876665644 443
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=645.44 Aligned_cols=537 Identities=20% Similarity=0.234 Sum_probs=431.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1470)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1470)
+++..++.+++.++...++.++..++.++.|++++.+++.+-.... ...-+.+++++++..++..++.....+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778888888888999999999999999999997753322 1112334445555555566666656667788
Q ss_pred HHHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHH
Q 000475 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYI-HR-IWLLPVQVFLALVILYKNLGAAPAF 419 (1470)
Q Consensus 345 ~g~rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~~~-~~-~w~~pl~i~~~~~lL~~~lG~~~~l 419 (1470)
++.++...+...+|+|.++++. ..+++|+++|.++ |++.+.+++... .. +...++ +++++++++.. +|+.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYY-SWKLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999864 3459999999997 899998876432 22 333333 33344444433 336667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1470)
Q Consensus 420 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1470)
+.++++++..++...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.++.++..++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888989999999999999999999999999999999999999888887765544444333333333
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000475 500 AIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1470)
Q Consensus 500 ~~~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 577 (1470)
....+..... ..+.++.++++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 3222222222 12334566777778899999999999999999999999999999999999999999999998754222
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEE
Q 000475 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1470)
Q Consensus 578 ~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1470)
.... ........|+++|++|+|+++ ..+.|+| ||++++||++||+|+||||||||+++|+|+++|++|++ .
T Consensus 440 ~~~~-~~~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKT-DPGKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcC-CCCCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 1111 111123469999999999753 3568999 99999999999999999999999999999999999996 8
Q ss_pred ECC-------------EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
++| .++||||+|++|++||+|||.+|++.++++..++++.|+++++++.+|+|.+|.+||+|.+|||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 887 3699999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecCh
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 803 (1470)
|||||++||||++++|+|++||||||+||+++++++.+.+ +.. ++|+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999998764 433 6899999999999999999999999999999999
Q ss_pred hhHHhhchhHHHHHHH
Q 000475 804 EDLIADQNSELVRQMK 819 (1470)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1470)
+|+++ ++..+.++..
T Consensus 669 ~~Ll~-~~~~y~~l~~ 683 (686)
T TIGR03797 669 DELMA-REGLFAQLAR 683 (686)
T ss_pred HHHHh-CCcHHHHHHH
Confidence 99987 5566665543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=650.69 Aligned_cols=535 Identities=16% Similarity=0.211 Sum_probs=436.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1470)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1470)
+..++.+++.++...+..++..++..+.|++++.+++.+..... ... .+.++++++++.++..++.....+...+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDW-LRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888889999999999999997654332 111 233444555555566666666667788899
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000475 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1470)
Q Consensus 347 ~rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l 422 (1470)
.++...+...+|+|.++++.. .+++|+++|.++.| +.+.+++. .+..+....+.+++.+++++. ++|+.+++.+
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l 300 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLL-YDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999998653 45999999999988 67887764 344455555555555555554 3446777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1470)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1470)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++...++.+...+.....+...
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888889999999999999999999999999999999999999999999887777766555444443332
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000475 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1470)
Q Consensus 503 ~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 580 (1470)
.+..... ..+.+++++++.+.++.++.|.+++++.++..+..|+..++..+..+.+++++++|+.++++.+++.+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 2222211 22345667888888999999999999999999999999999999999999999999999998765221111
Q ss_pred ------CCCC-CCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCC
Q 000475 581 ------EPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1470)
Q Consensus 581 ------~~~~-~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 652 (1470)
.... ......|+++|++|+|+++ ..+.|+| ||++++||+++|+|+||||||||+++|+|+++|++|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 0111 1223579999999999854 3568999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------EeEEEcCCCCCCCccHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccCCCcccccCCC
Q 000475 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1470)
Q Consensus 653 ~~i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~-~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g 718 (1470)
++ .++| .++||||+|++|++||+|||.++. +.+++++.++++.++++++++.+|+|.+|.+||+|
T Consensus 535 ~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 535 EI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred EE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 86 7876 479999999999999999999886 47888999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 000475 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1470)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 798 (1470)
.+|||||||||+||||++++|+|+||||||||||+++++++++.+.+ .++|+|+|||+++.+..||+|++|++|+|+
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999876543 489999999999999999999999999999
Q ss_pred EecChhhHHhhchhHHHHH
Q 000475 799 QSGKYEDLIADQNSELVRQ 817 (1470)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~ 817 (1470)
+.|+++|+++ .+..+.++
T Consensus 691 ~~G~~~~Ll~-~~~~y~~l 708 (710)
T TIGR03796 691 QRGTHEELWA-VGGAYARL 708 (710)
T ss_pred EecCHHHHHH-cCCcHHHH
Confidence 9999999987 44445443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=645.44 Aligned_cols=530 Identities=22% Similarity=0.319 Sum_probs=433.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1470)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1470)
.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ... .+.+++++++..++..++.....+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FET-LWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888899999999999999997653322 111 2333444444445555555555566778
Q ss_pred HHHHHHHHHHHHHHHHhcccccC--CCCHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 345 IGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLYI--HRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1470)
Q Consensus 345 ~g~rir~~L~~~iy~K~L~ls~~--~~~~G~ivnlms~D~~~i~~~~~~~--~~~w~~pl~i~~~~~lL~~~lG~~~~l~ 420 (1470)
++.++...+...+|+|.++++.. .+++|++++.+ +|++.+.+++... ..+...+. +++.+++++. +.|+.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAI-IGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHH-HHhHHHHH
Confidence 89999999999999999988654 34899999999 7999999886532 22333333 3333344443 34467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1470)
Q Consensus 421 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1470)
.++++++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888999999999999999999999999999999999999999999999988877766665555544443
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000475 501 IAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1470)
Q Consensus 501 ~~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~ 578 (1470)
...+..... ..+.++++|++.+.++.++.|.+++++.++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 332222222 223355678888888999999999999999999999999999999999999999999999987652211
Q ss_pred CCC-CCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEE
Q 000475 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1470)
Q Consensus 579 ~~~-~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1470)
... .........|+++|++|+|+++ ..+.|+| ||++++||+++|+|+||||||||+++|+|+++|++|++ .
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 523 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-L 523 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-E
Confidence 111 1111223469999999999753 3568999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
++| .++||||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 877 4799999999999999999999986 78899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 802 (1470)
||||||++||||++++|++++||||||+||+++++++.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999999999999999999999988764 566667899999999999999999999999999999999
Q ss_pred hhhHHh
Q 000475 803 YEDLIA 808 (1470)
Q Consensus 803 ~~~l~~ 808 (1470)
++|+++
T Consensus 683 ~~eLl~ 688 (694)
T TIGR03375 683 KDQVLE 688 (694)
T ss_pred HHHHHH
Confidence 999876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=643.08 Aligned_cols=525 Identities=19% Similarity=0.263 Sum_probs=406.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG-LVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1470)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~r 348 (1470)
++.+|+.++...++.++..++..+.|+++..+++.+....+....... ++++++.++..++..+....+.+ .+.+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 231 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY----TMAR 231 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 445667788888888999999999999999999988643320111101 11121112222222222222333 4444
Q ss_pred HHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000475 349 VRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1470)
Q Consensus 349 ir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~ 424 (1470)
+...+...+|+|.++.+. ....+|+++|.++.|++.+.+.+. .+..++...+++++++++++. ++|..+++.++.
T Consensus 232 ~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~ 310 (711)
T TIGR00958 232 INLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLIN 310 (711)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 444555566677766543 344899999999999999988764 455566666666666666554 444666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1470)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 504 (1470)
+++...+...+.++.++..++.++..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWT 390 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888888888999999999999999999999999999999877777665443333222222222211111
Q ss_pred HH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000475 505 FW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP 582 (1470)
Q Consensus 505 ~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 582 (1470)
.. .....+.++.++.+.+..+.++.+.+++++.+...+..|+..++..+..+.+++++.+|+.++++.+++.+.....
T Consensus 391 ~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 470 (711)
T TIGR00958 391 TSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 11 1112234456777778889999999999999999999999999999999999999999999999876532211111
Q ss_pred CCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--
Q 000475 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1470)
Q Consensus 583 ~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-- 659 (1470)
...+....|+++|++|+|+++ ++.+.|+| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg~~ 544 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVP 544 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEE
Confidence 111223469999999999854 23578999 99999999999999999999999999999999999996 8887
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
.++||+|+|++|++||||||.+|.+ .++++..++++.++++++++.+|+|.+|.+||+|.+|||||||
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 4799999999999999999999965 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHH
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 807 (1470)
|++||||++++|+|++||||||+||+++++.+.+ ....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999999999999999999999999888876 2234689999999999999999999999999999999999998
Q ss_pred h
Q 000475 808 A 808 (1470)
Q Consensus 808 ~ 808 (1470)
+
T Consensus 702 ~ 702 (711)
T TIGR00958 702 E 702 (711)
T ss_pred h
Confidence 7
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=644.53 Aligned_cols=452 Identities=26% Similarity=0.405 Sum_probs=344.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1470)
.++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|.++| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996320 12467899 999999999999999999999999999999986 68986 5543
Q ss_pred -------------EeEEEcCCCC--CC-CccHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHHhccCCCccccc
Q 000475 660 -------------KKAYVPQSSW--IQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1470)
Q Consensus 660 -------------~~ayv~Q~~~--i~-~~Ti~eNI~~g~----~~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig 715 (1470)
.++|++|+|. ++ ..|+++|+.++. ..+ .++.+++++.+++.+.. ....
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 4799999974 33 469999987431 111 12334445555543210 0124
Q ss_pred CCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEE
Q 000475 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVM 792 (1470)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l 792 (1470)
.+..+|||||||||+|||||+.+|+++||||||++||+.+...+.+ ++..+. .++|||+|||+++++.. ||+|++|
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 5678999999999999999999999999999999999999888876 454432 37999999999999875 9999999
Q ss_pred eCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhc
Q 000475 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTEL 872 (1470)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 872 (1470)
++|++++.|+++++..... ..
T Consensus 231 ~~G~i~~~g~~~~~~~~~~-------------------------------------~~---------------------- 251 (529)
T PRK15134 231 QNGRCVEQNRAATLFSAPT-------------------------------------HP---------------------- 251 (529)
T ss_pred ECCEEEEeCCHHHHhhCCC-------------------------------------CH----------------------
Confidence 9999998887765532000 00
Q ss_pred CcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHH
Q 000475 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952 (1470)
Q Consensus 873 g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1470)
+..
T Consensus 252 ----------~~~------------------------------------------------------------------- 254 (529)
T PRK15134 252 ----------YTQ------------------------------------------------------------------- 254 (529)
T ss_pred ----------HHH-------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000475 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1470)
Q Consensus 953 ~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1032 (1470)
T Consensus 255 -------------------------------------------------------------------------------- 254 (529)
T PRK15134 255 -------------------------------------------------------------------------------- 254 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHH
Q 000475 1033 FLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1112 (1470)
Q Consensus 1033 ~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~ 1112 (1470)
.++ . .
T Consensus 255 ------------------------~~~-~---------~----------------------------------------- 259 (529)
T PRK15134 255 ------------------------KLL-N---------S----------------------------------------- 259 (529)
T ss_pred ------------------------HHH-H---------h-----------------------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 1113 CVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192 (1470)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~ 1192 (1470)
.+ +
T Consensus 260 ----------------------------------~~-----------------------------------------~-- 262 (529)
T PRK15134 260 ----------------------------------EP-----------------------------------------S-- 262 (529)
T ss_pred ----------------------------------Cc-----------------------------------------c--
Confidence 00 0
Q ss_pred HHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHH
Q 000475 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1263 (1470)
Q Consensus 1193 ~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL 1263 (1470)
.++..+ ++ +....|+++|++++|+. +...+|+|+||+|++||++||+|+||||||||
T Consensus 263 ----~~~~~~-------~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTL 328 (529)
T PRK15134 263 ----GDPVPL-------PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTT 328 (529)
T ss_pred ----cccccc-------CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHH
Confidence 000000 00 00114899999999952 12469999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEcCEeCCCCCHHH---HhcccEEEccCC--CCCcc-cHHHhcCcC---C--CCC----HHHHHH
Q 000475 1264 IQALFRVVEPSGGRILIDGVDISMIGLQD---LRSRLSIIPQDP--MLFQG-TVRTNLDPL---E--QHS----DQEIWE 1328 (1470)
Q Consensus 1264 l~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~isiIpQdp--~LF~g-TIR~NLdp~---~--~~s----d~eI~~ 1328 (1470)
+++|.|++ |++|+|.+||.++...+..+ +|++++|+||+| .+|.. |+++|+... . ..+ ++++.+
T Consensus 329 lk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 407 (529)
T PRK15134 329 GLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA 407 (529)
T ss_pred HHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHH
Confidence 99999998 58999999999998776544 478899999998 36654 999999631 1 111 234667
Q ss_pred HHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CC
Q 000475 1329 VINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SR 1405 (1470)
Q Consensus 1329 aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~ 1405 (1470)
+++..++. +.. +.++ .+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+
T Consensus 408 ~l~~~~l~~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 476 (529)
T PRK15134 408 VMEEVGLDPETR-------HRYP----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476 (529)
T ss_pred HHHHcCCCHHHH-------hcCC----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC
Confidence 77777774 222 2233 4699999999999999999999999999999999999999999999764 37
Q ss_pred cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1406 CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1406 ~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
+|||+|+|+++.+.. ||+|++|++|++++.|+++++++++...|
T Consensus 477 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 477 LAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred CEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 899999999999876 99999999999999999999987654333
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=631.57 Aligned_cols=515 Identities=17% Similarity=0.133 Sum_probs=392.0
Q ss_pred HHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000475 898 LCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISF 977 (1470)
Q Consensus 898 l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~f 977 (1470)
++.++.....++..+.++.+.+.... .....+..++++.++..++.++..++....+.+...+++.++++++++.|+.|
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~ 103 (555)
T TIGR01194 25 ALGLAGGLAIIALLASINNAIHEENF-LGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEE 103 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33444455555566666655432111 11112333455555666777888888889999999999999999999999999
Q ss_pred ccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 000475 978 FDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQA 1057 (1470)
Q Consensus 978 fd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~ 1057 (1470)
|++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.+.++++.++++.+.+. .
T Consensus 104 ~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~------------~ 170 (555)
T TIGR01194 104 IDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQ------------L 170 (555)
T ss_pred HHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------H
Confidence 9999999999999999999998875 46677777888888888899999988777655444433322 1
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHH--HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 000475 1058 YYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQEN--RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNF 1135 (1470)
Q Consensus 1058 ~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1135 (1470)
+..+..++..+......+.+.+++.|.+.|+.++|+|+.++ ...+++.+..++..+................+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (555)
T TIGR01194 171 LAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFL 250 (555)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223333333445678899999999999999999854 4455566655555554433222222222222222222
Q ss_pred HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc--CC-CCC--
Q 000475 1136 AFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI--KN-SRP-- 1210 (1470)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~--~~-~~~-- 1210 (1470)
...+..++. ...+.++.|.+.....|...+...+..+...+.++++...+.+|+.++.+.+.+++... ++ ...
T Consensus 251 ~~~~~~~~~--~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 328 (555)
T TIGR01194 251 LIGCALFAA--AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLL 328 (555)
T ss_pred HHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 111111111 11246777777777788888888888899999999999999999999976432221110 00 000
Q ss_pred CCCCCCCCcEEEEeEEEEeCCC---CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC
Q 000475 1211 SPEWPSSGKIELENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1287 (1470)
Q Consensus 1211 ~~~wp~~g~I~~~nvs~~Y~~~---~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~ 1287 (1470)
.+.....+.|+++||+|+|++. .+++|+|+||++++||++||||+||||||||+++|.|+++|++|+|.+||+|+++
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred cccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 0111234689999999999753 2369999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1288 IGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1288 i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
++.+++|++++++||||.+|++|+|+|+.| +.+|++++++++++++++++..+|+|+||. .+||||||||++|
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 999999999999999999999999999743 578999999999999999999999999995 6899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-h-cCCcEEEEEecChhhhhhcCEEEEEeCCEEEEe
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-E-TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~-~-~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~ 1435 (1470)
|||++++|+|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999887643 2 468999999999999999999999999999986
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=683.39 Aligned_cols=251 Identities=22% Similarity=0.284 Sum_probs=204.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHh--cCCCCCccccCCCCCCCCCCCCC--cEEEEeEEEEeC--CCCCcceeeeeEEeeCCc
Q 000475 1175 IWNLCNVENKMISVERILQFT--NIPSEAPLVIKNSRPSPEWPSSG--KIELENLLVQYN--PTLPMVLKGITCTFPGEK 1248 (1470)
Q Consensus 1175 i~~~~~le~~~~sveRi~~~~--~~~~E~~~~~~~~~~~~~wp~~g--~I~~~nvs~~Y~--~~~~~vLk~is~~i~~Ge 1248 (1470)
.+...+.|+++.++||..+|. +.+.|.+.......+|. ..| .++++|++++|+ ++.+.+|+|||+++++||
T Consensus 714 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge 790 (1394)
T TIGR00956 714 KKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGT 790 (1394)
T ss_pred hhcccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCE
Confidence 333456788889999998873 34444433222222222 134 379999999985 334579999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCC-CcccHHHhcCcC------
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVRTNLDPL------ 1318 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~L-F~gTIR~NLdp~------ 1318 (1470)
++||+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++.+ +..||||||+..
T Consensus 791 ~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~ 866 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQP 866 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999998 78899999999985 3589999999998764 566999999731
Q ss_pred CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC-EEEEeccCCCCCHHHHH
Q 000475 1319 EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR-ILVLDEATASIDTATDN 1393 (1470)
Q Consensus 1319 ~~~sd~e----I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~-ILlLDEaTsslD~~Td~ 1393 (1470)
.+.++++ +.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||+.+..
T Consensus 867 ~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~ 939 (1394)
T TIGR00956 867 KSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHH
Confidence 1334433 567777777654 36899998888999999999999999999997 99999999999999999
Q ss_pred HHHHHHHHh-cCCcEEEEEecChhhh--hhcCEEEEEeCC-EEEEecChh
Q 000475 1394 VIQQTIREE-TSRCTVITVAHRIPTV--IDNDLVLVLDEG-KVLEYDSPR 1439 (1470)
Q Consensus 1394 ~Iq~~I~~~-~~~~TVI~IAHRl~ti--~~~DrIlvL~~G-~vvE~g~p~ 1439 (1470)
.|++.|++. .+++|||+++|+++.. ..||+|++|++| +++++|++.
T Consensus 940 ~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 940 SICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999999986 4689999999999974 469999999997 999999974
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=638.65 Aligned_cols=438 Identities=23% Similarity=0.371 Sum_probs=335.3
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC--CCCcEEEECC-------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~~i~~~g------- 659 (1470)
.++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++| ++|++ .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 5899999999963 357889 999999999999999999999999999999986 79986 6655
Q ss_pred -------EeEEEcCCCCCCC-ccHHHHHhcCCCC------CHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCC
Q 000475 660 -------KKAYVPQSSWIQT-GTIRENILFGKDM------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1470)
Q Consensus 660 -------~~ayv~Q~~~i~~-~Ti~eNI~~g~~~------~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~L 721 (1470)
.++||+|++.++. .|++||+.++... +.+ +.+++++..++ .........+|
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~L 144 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----------DINPATPVGNL 144 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----------CCCcccchhhC
Confidence 2799999987654 6999999987432 111 11222222222 11234567899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||+||||++.+|+++||||||++||+.....+.+ ++..+ .+++|+|++||+++++.. ||+|++|++|++++
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999999999999999888876 44443 357899999999999875 99999999999987
Q ss_pred ecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHH
Q 000475 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTV 879 (1470)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 879 (1470)
.|+.+++... +.
T Consensus 224 ~~~~~~~~~~---~~----------------------------------------------------------------- 235 (506)
T PRK13549 224 TRPAAGMTED---DI----------------------------------------------------------------- 235 (506)
T ss_pred ecccccCCHH---HH-----------------------------------------------------------------
Confidence 7654332110 00
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000475 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTA 959 (1470)
Q Consensus 880 y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s 959 (1470)
+.
T Consensus 236 ----~~-------------------------------------------------------------------------- 237 (506)
T PRK13549 236 ----IT-------------------------------------------------------------------------- 237 (506)
T ss_pred ----HH--------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000475 960 QRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGI 1039 (1470)
Q Consensus 960 ~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~ 1039 (1470)
T Consensus 238 -------------------------------------------------------------------------------- 237 (506)
T PRK13549 238 -------------------------------------------------------------------------------- 237 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1040 SIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNC 1119 (1470)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1119 (1470)
.++ | .
T Consensus 238 -----------------~~~---------------------------~--------~----------------------- 242 (506)
T PRK13549 238 -----------------MMV---------------------------G--------R----------------------- 242 (506)
T ss_pred -----------------Hhh---------------------------C--------c-----------------------
Confidence 000 0 0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 000475 1120 GTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPS 1199 (1470)
Q Consensus 1120 ~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~ 1199 (1470)
. . .+ ..|.
T Consensus 243 -----------------------------~--~------------------------------------~~-----~~~~ 250 (506)
T PRK13549 243 -----------------------------E--L------------------------------------TA-----LYPR 250 (506)
T ss_pred -----------------------------C--c------------------------------------cc-----cccc
Confidence 0 0 00 0000
Q ss_pred CCccccCCCCCCCCCCCCCcEEEEeEEEEeCC-CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcE
Q 000475 1200 EAPLVIKNSRPSPEWPSSGKIELENLLVQYNP-TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-PSGGR 1277 (1470)
Q Consensus 1200 E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~-~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-p~~G~ 1277 (1470)
+. ++ +....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+
T Consensus 251 ~~--------~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~ 319 (506)
T PRK13549 251 EP--------HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE 319 (506)
T ss_pred cc--------cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence 00 00 11124899999999952 22359999999999999999999999999999999999998 59999
Q ss_pred EEEcCEeCCCCCH-HHHhcccEEEccCC---CCCc-ccHHHhcCcC--CC------CCH----HHHHHHHHHcCcHHHHH
Q 000475 1278 ILIDGVDISMIGL-QDLRSRLSIIPQDP---MLFQ-GTVRTNLDPL--EQ------HSD----QEIWEVINKCHLAEIVR 1340 (1470)
Q Consensus 1278 I~IDG~dI~~i~l-~~LR~~isiIpQdp---~LF~-gTIR~NLdp~--~~------~sd----~eI~~aL~~~~L~~~v~ 1340 (1470)
|.+||.++...+. +..|++++|+||+| .+|. .|+.+|+... .. .+. +++.++++.+++.+
T Consensus 320 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 396 (506)
T PRK13549 320 IFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT--- 396 (506)
T ss_pred EEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC---
Confidence 9999999876543 44678899999996 3564 5999999631 11 111 23556666665521
Q ss_pred hcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000475 1341 QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI 1419 (1470)
Q Consensus 1341 ~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~ 1419 (1470)
+..|.++ ..||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.
T Consensus 397 ---~~~~~~~----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~ 469 (506)
T PRK13549 397 ---ASPELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVL 469 (506)
T ss_pred ---CCccccc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1123333 4699999999999999999999999999999999999999999998753 4789999999999987
Q ss_pred h-cCEEEEEeCCEEEEecChhHHh
Q 000475 1420 D-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1420 ~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
. ||+|++|++|+++..|+++++.
T Consensus 470 ~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 470 GLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HhCCEEEEEECCEEEEEeccccCC
Confidence 6 9999999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-65 Score=637.94 Aligned_cols=436 Identities=21% Similarity=0.319 Sum_probs=333.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4899999999963 357888 99999999999999999999999999999999999986 6665
Q ss_pred -----EeEEEcCCCCCCC-ccHHHHHhcCCCC----------CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~eNI~~g~~~----------~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.++. .|++||+.++... +. ++.+++++.+++. ...+.+..
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-----------VDLDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-----------CCcccchh
Confidence 3799999987654 6999999886420 11 1122233333322 12345677
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
+|||||||||+|||||+.+|+++||||||++||+.+...+.+. +..+ .+++|+|+|||+++++.. ||+|++|++|++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999998888764 4443 347999999999999875 999999999999
Q ss_pred EEecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchH
Q 000475 798 EQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKW 877 (1470)
Q Consensus 798 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 877 (1470)
++.|+++++... +. .. .
T Consensus 224 ~~~g~~~~~~~~---~~---~~------------------------------~--------------------------- 240 (510)
T PRK09700 224 VCSGMVSDVSND---DI---VR------------------------------L--------------------------- 240 (510)
T ss_pred eeecchhhCCHH---HH---HH------------------------------H---------------------------
Confidence 888776554210 00 00 0
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000475 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIK 957 (1470)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~ 957 (1470)
..+
T Consensus 241 ---------~~~-------------------------------------------------------------------- 243 (510)
T PRK09700 241 ---------MVG-------------------------------------------------------------------- 243 (510)
T ss_pred ---------hcC--------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000475 958 TAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVIL 1037 (1470)
Q Consensus 958 ~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~ 1037 (1470)
.+.
T Consensus 244 ---------------~~~-------------------------------------------------------------- 246 (510)
T PRK09700 244 ---------------REL-------------------------------------------------------------- 246 (510)
T ss_pred ---------------CCc--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 000475 1038 GISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1117 (1470)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1117 (1470)
.
T Consensus 247 -------------------~------------------------------------------------------------ 247 (510)
T PRK09700 247 -------------------Q------------------------------------------------------------ 247 (510)
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 000475 1118 NCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI 1197 (1470)
Q Consensus 1118 ~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~ 1197 (1470)
. + +...
T Consensus 248 -------------------------------~----------------------------------------~---~~~~ 253 (510)
T PRK09700 248 -------------------------------N----------------------------------------R---FNAM 253 (510)
T ss_pred -------------------------------c----------------------------------------c---cccc
Confidence 0 0 0000
Q ss_pred CCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Q 000475 1198 PSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277 (1470)
Q Consensus 1198 ~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~ 1277 (1470)
++.. .++ +....|+++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+
T Consensus 254 ~~~~-------~~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 319 (510)
T PRK09700 254 KENV-------SNL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE 319 (510)
T ss_pred cccc-------ccC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 0000 000 0112599999998763 2899999999999999999999999999999999999999999
Q ss_pred EEEcCEeCCCCCH-HHHhcccEEEccCC---CCCcc-cHHHhcCcCCC------------CC----HHHHHHHHHHcCcH
Q 000475 1278 ILIDGVDISMIGL-QDLRSRLSIIPQDP---MLFQG-TVRTNLDPLEQ------------HS----DQEIWEVINKCHLA 1336 (1470)
Q Consensus 1278 I~IDG~dI~~i~l-~~LR~~isiIpQdp---~LF~g-TIR~NLdp~~~------------~s----d~eI~~aL~~~~L~ 1336 (1470)
|.+||.++...+. ..+|++++|+||++ .+|.+ |+++|+..... .+ .+++.++++..++.
T Consensus 320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 9999999876544 45788999999984 57765 99999864211 01 12345556665542
Q ss_pred HHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh
Q 000475 1337 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRI 1415 (1470)
Q Consensus 1337 ~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl 1415 (1470)
++..+.++ ..||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. ++.|||+|||++
T Consensus 400 ------~~~~~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 400 ------CHSVNQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred ------CCCccCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 02234444 4599999999999999999999999999999999999999999998753 578999999999
Q ss_pred hhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1416 PTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1416 ~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
+.+.. ||+|++|++|++++.+++.+
T Consensus 470 ~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 470 PEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHhhCCEEEEEECCEEEEEecCcc
Confidence 98865 99999999999999887633
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=637.36 Aligned_cols=219 Identities=26% Similarity=0.428 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCC---CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEc-CE---eCCCCC--
Q 000475 1219 KIELENLLVQYNP---TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID-GV---DISMIG-- 1289 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~---~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID-G~---dI~~i~-- 1289 (1470)
.++++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22469999999999999999999999999999999999999999999996 64 344433
Q ss_pred -HHHHhcccEEEccCCCCCcc-cHHHhcCc-CC-CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000475 1290 -LQDLRSRLSIIPQDPMLFQG-TVRTNLDP-LE-QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1290 -l~~LR~~isiIpQdp~LF~g-TIR~NLdp-~~-~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
...+|++++|+||++.+|.. |+++|+.. .. .. .++++.++++.+++.+.- .++-++.++ ..|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHH
Confidence 23567889999999988875 99999952 11 11 123466677777764210 000123333 4699999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p 1438 (1470)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||||++|++|++++.|+|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998764 37899999999999976 999999999999999999
Q ss_pred hHHhh
Q 000475 1439 RQLLE 1443 (1470)
Q Consensus 1439 ~~Ll~ 1443 (1470)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=631.57 Aligned_cols=201 Identities=18% Similarity=0.321 Sum_probs=173.6
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999998 3579
Q ss_pred EEEccCCC--CCc-ccHHHhcCcCC--CCCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1298 SIIPQDPM--LFQ-GTVRTNLDPLE--QHSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1298 siIpQdp~--LF~-gTIR~NLdp~~--~~sd~eI~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+|+||++. ++. .|+++|+..+. ...++++.++|+..++. +. .|.++ .+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~----~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD-------IKKSV----KVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH-------hcCcc----cccCHHHHHHHHHHHHH
Confidence 99999974 443 59999986432 23456678888888873 32 23333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL-EYDSPRQLLED 1444 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv-E~g~p~~Ll~~ 1444 (1470)
+++|+||+|||||++||+.+...+.+.|++. ++|||+|||+++.+.. ||+|++|++|+++ +.|++.++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999875 4699999999999876 9999999999998 77999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-62 Score=620.34 Aligned_cols=539 Identities=18% Similarity=0.219 Sum_probs=424.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1470)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1470)
+.+++.+++.++...+..++..++..+.|++++.+++.+.+... ... ...++.++++..++..++.....+...+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSV-LKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777778888888889999999987664322 111 122222233333444444444445567778
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000475 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1470)
Q Consensus 347 ~rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l 422 (1470)
.++...+...+|+|.++++.. .++.|++++.+++|++++.+.+. .+..++..++.+++.+++++.. +|+.+++.+
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~l 172 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-SWQLSLILI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888999999999987653 34899999999999999988654 4455666666666666666643 446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1470)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1470)
+++++...+...+.++.++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+.........
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777888888898999999999999999999999999999999998888887764433333323222222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000475 503 FLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1470)
Q Consensus 503 ~~~~~~--p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 580 (1470)
.+.... -..+.++.++.+.+..+.++++.+.+++.++..+..|+..+...+..+.+++.+++|+.++++.+++.+...
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 253 PIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 211111 123334556677777889999999999999999999999999999999999999999999998665321111
Q ss_pred CCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC
Q 000475 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1470)
Q Consensus 581 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g 659 (1470)
. ........|+++|++|+|+++ ..+.+++ |+++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 333 ~-~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g 404 (582)
T PRK11176 333 R-VIERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDG 404 (582)
T ss_pred c-CCCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECC
Confidence 1 111123469999999999753 3578999 99999999999999999999999999999999999997 7877
Q ss_pred E-------------eEEEcCCCCCCCccHHHHHhcCCC--CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 K-------------KAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 ~-------------~ayv~Q~~~i~~~Ti~eNI~~g~~--~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
. ++||||+|.+|++||+|||.+|.+ .++++++++++.++++++++.+|+|.+|.+|++|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 3 599999999999999999999863 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChh
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 804 (1470)
||||++||||++++|+|++|||||||||++++..+++. +....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998765 45555789999999999999999999999999999999999
Q ss_pred hHHhhchhHHHHHHH
Q 000475 805 DLIADQNSELVRQMK 819 (1470)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1470)
++.+ .+..+.++..
T Consensus 564 ~l~~-~~~~y~~l~~ 577 (582)
T PRK11176 564 ELLA-QNGVYAQLHK 577 (582)
T ss_pred HHHh-CCChHHHHHH
Confidence 9998 5556666554
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=618.51 Aligned_cols=538 Identities=19% Similarity=0.227 Sum_probs=431.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1470)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1470)
+.+++.+++.+++..++.++..++....|++++.+++..-.... ... -+.+++++++..++..+......+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSV-LWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999999999999998886543222 111 122232333344444444444445667788
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000475 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1470)
Q Consensus 347 ~rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l 422 (1470)
.++...+...+|+|.++.+.. ..+.|+++|.++.|++++.+++. .+..++...+.+++++++++. ++|+.+++.+
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~l 161 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIVV 161 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 888888888899998887643 23899999999999999998775 455555555556556555554 4546666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1470)
Q Consensus 423 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1470)
+++++.+.+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (571)
T TIGR02203 162 VMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS 241 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888889999999999999999999999999999999999999999888888776655554444333333322
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000475 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1470)
Q Consensus 503 ~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 580 (1470)
.+..... ..+.++.++.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++.+|+.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (571)
T TIGR02203 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 2222222 22344567777778899999999999999999999999999999999999999999999998665322111
Q ss_pred CCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC
Q 000475 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1470)
Q Consensus 581 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g 659 (1470)
. +....+..++++|++|+|++. ..+.+++ |+++++||+++|+|+||||||||+++|+|.++|.+|++ .++|
T Consensus 322 ~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~g 393 (571)
T TIGR02203 322 R-AIERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDG 393 (571)
T ss_pred C-CCCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECC
Confidence 1 111223469999999999754 3468999 99999999999999999999999999999999999996 8887
Q ss_pred -------------EeEEEcCCCCCCCccHHHHHhcCC--CCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~eNI~~g~--~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++||||+|++|++|++|||.++. +.++++++++++.|+++++++.+|+|.+|.+|++|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 369999999999999999999996 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChh
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 804 (1470)
||||++||||++++|+|++||||||+||+++++++.+. +....+++|+|+|||+.+.+..||+|++|++|++++.|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999765 45556789999999999999999999999999999999999
Q ss_pred hHHhhchhHHHHHH
Q 000475 805 DLIADQNSELVRQM 818 (1470)
Q Consensus 805 ~l~~~~~~~~~~~~ 818 (1470)
++.+ .+..+.+..
T Consensus 553 ~l~~-~~~~~~~~~ 565 (571)
T TIGR02203 553 ELLA-RNGLYAQLH 565 (571)
T ss_pred HHHH-cCCHHHHHH
Confidence 9987 344454443
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-62 Score=632.65 Aligned_cols=532 Identities=22% Similarity=0.267 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1470)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1470)
..++.+++.++...++.++..++.++.|++++.+++.+..... ... -+.+++++++..++..++.....+...+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888888899999999999999987654322 111 2233334444444555555555566778888
Q ss_pred HHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000475 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1470)
Q Consensus 348 rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~~~-~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~ 423 (1470)
++...+...+|+|.++++. ..+++|+++|.++ |++.+.+++... .......+.+++.+++++. ++|+.+++.++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~ 303 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNMLLFLLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 9999999999999998875 3459999999998 999999876432 2222222333333334443 34366666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 000475 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC----S 499 (1470)
Q Consensus 424 ~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~----~ 499 (1470)
++++...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++...+..+...+..... +
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777888889999999999999999999999999999999999999998888776544433332222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-C
Q 000475 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK-P 578 (1470)
Q Consensus 500 ~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~-~ 578 (1470)
...++... ..+.++++|++.+..+.+|.|.++++..++..+..|+..+...+..+.+++++.+|+.++++.+++.+ .
T Consensus 384 ~~~~~~~~--~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 384 IKAVTKLI--LNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 22222212 22445677888888999999999999999999999999999999999999999999999998765221 1
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEE
Q 000475 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1470)
Q Consensus 579 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~ 657 (1470)
....+.......|+++|++|+|+++ .+.|+| |+++++|+++||+|+||||||||+++|+|+++|++|++ .+
T Consensus 462 ~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I-~i 533 (708)
T TIGR01193 462 KKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-LL 533 (708)
T ss_pred ccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-EE
Confidence 1111112223579999999999743 468999 99999999999999999999999999999999999996 88
Q ss_pred CC-------------EeEEEcCCCCCCCccHHHHHhcCC--CCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 658 HG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 658 ~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~--~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
+| .++||||+|++|++||+|||.+|. +.++++..++++.++++++++.+|+|.+|.+||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 87 479999999999999999999983 467788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 802 (1470)
||||||++||||++++|+|++||||||+||+++++++.+.+. .. +++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-Hh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999998877654 43 6899999999999999999999999999999999
Q ss_pred hhhHHhhchhHHHHH
Q 000475 803 YEDLIADQNSELVRQ 817 (1470)
Q Consensus 803 ~~~l~~~~~~~~~~~ 817 (1470)
++|+++ .+..+.++
T Consensus 692 ~~~L~~-~~~~y~~l 705 (708)
T TIGR01193 692 HDELLD-RNGFYASL 705 (708)
T ss_pred HHHHHh-cCCcHHHH
Confidence 999987 44445443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=615.91 Aligned_cols=537 Identities=20% Similarity=0.249 Sum_probs=414.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1470)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1470)
..++.+++.++...++.++..++..+.|+++..+++.+..... .+......+++++++..++..++.....+...+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888899999999999999997643222 111111222333444444555555555566778888
Q ss_pred HHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000475 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHR-IWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1470)
Q Consensus 348 rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~~~~~-~w~~pl~i~~~~~lL~~~lG~~~~l~~l~ 423 (1470)
++...+...+|+|.++.+. ..++.|+++|.+++|++.+.+++..... +....+.+++++.+++ .++|+.+++.++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~ 173 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888999999999998764 3458999999999999999987665433 3333333333333332 345455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000475 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA--- 500 (1470)
Q Consensus 424 ~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~--- 500 (1470)
++++.+.+.....++.++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.....+.
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566667777777888888888889999999999999999999999999887754433322221111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000475 501 -IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1470)
Q Consensus 501 -~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 579 (1470)
...++.....++ ++..+.+ ...+.++.+.+++++.++..+..|+..++.....+.+++.|.+||.++++.++++...
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 111111111111 1122223 3577899999999999999999999999999999999999999999999865432111
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEEC
Q 000475 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1470)
Q Consensus 580 ~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1470)
... ......|+++|++|+|+++ .+.++| ||++++||+++|+|+||||||||+++|+|+++|++|++ .++
T Consensus 332 ~~~--~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~id 401 (592)
T PRK10790 332 DDR--PLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-RLD 401 (592)
T ss_pred Ccc--CCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EEC
Confidence 111 1123469999999999743 358999 99999999999999999999999999999999999986 787
Q ss_pred CE-------------eEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 659 GK-------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 659 g~-------------~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
|. ++||||+|++|++||+|||.+|.+.++++.+++++.++++++++.+|+|.+|.+|++|.+|||||
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 73 79999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhh
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 805 (1470)
|||++||||++++|+|+|||||||+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++|
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999888664 555667899999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHH
Q 000475 806 LIADQNSELVRQMKA 820 (1470)
Q Consensus 806 l~~~~~~~~~~~~~~ 820 (1470)
+++ .+..+.++...
T Consensus 561 L~~-~~~~y~~l~~~ 574 (592)
T PRK10790 561 LLA-AQGRYWQMYQL 574 (592)
T ss_pred HHh-CCCHHHHHHHH
Confidence 997 56677766654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=630.77 Aligned_cols=431 Identities=23% Similarity=0.369 Sum_probs=331.3
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4889999999963 357889 99999999999999999999999999999999999987 6655
Q ss_pred -----EeEEEcCCCCCC-CccHHHHHhcCCCC-------CHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~-~~Ti~eNI~~g~~~-------~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
.++|++|++.++ +.|++||+.++... +.. +.+++++.+++.+ .......+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCC
Confidence 379999998665 46999999987432 111 1222233332211 2245677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 800 (1470)
||||||++|||||..+|+++||||||++||+.+...+.+ .+..+ .+++|+|++||+++++.. ||+|++|++|+++..
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999888875 44433 347899999999999865 999999999999876
Q ss_pred cChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHH
Q 000475 801 GKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVY 880 (1470)
Q Consensus 801 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 880 (1470)
|+.+++..+ +. . +
T Consensus 223 ~~~~~~~~~---~~---~-------------------------------~------------------------------ 235 (501)
T PRK10762 223 REVADLTED---SL---I-------------------------------E------------------------------ 235 (501)
T ss_pred cCcCcCCHH---HH---H-------------------------------H------------------------------
Confidence 654332110 00 0 0
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000475 881 SAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960 (1470)
Q Consensus 881 ~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 960 (1470)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T PRK10762 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000475 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGIS 1040 (1470)
Q Consensus 961 ~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~ 1040 (1470)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T PRK10762 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 000475 1041 IWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCG 1120 (1470)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1120 (1470)
.++ |
T Consensus 236 ----------------~~~---------------------------~--------------------------------- 239 (501)
T PRK10762 236 ----------------MMV---------------------------G--------------------------------- 239 (501)
T ss_pred ----------------Hhc---------------------------C---------------------------------
Confidence 000 0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCC
Q 000475 1121 TMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSE 1200 (1470)
Q Consensus 1121 ~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E 1200 (1470)
. +.. ..++.
T Consensus 240 ----------------------------~----------------------------------------~~~---~~~~~ 248 (501)
T PRK10762 240 ----------------------------R----------------------------------------KLE---DQYPR 248 (501)
T ss_pred ----------------------------C----------------------------------------Ccc---ccccc
Confidence 0 000 00000
Q ss_pred CccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000475 1201 APLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280 (1470)
Q Consensus 1201 ~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I 1280 (1470)
.+ ++ |..-.|+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 249 ~~-------~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~ 311 (501)
T PRK10762 249 LD-------KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred cc-------cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 00 00 1112488999974 2799999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCH-HHHhcccEEEccCC---CCCc-ccHHHhcCcCC-----C----CC----HHHHHHHHHHcCcHHHHHhc
Q 000475 1281 DGVDISMIGL-QDLRSRLSIIPQDP---MLFQ-GTVRTNLDPLE-----Q----HS----DQEIWEVINKCHLAEIVRQD 1342 (1470)
Q Consensus 1281 DG~dI~~i~l-~~LR~~isiIpQdp---~LF~-gTIR~NLdp~~-----~----~s----d~eI~~aL~~~~L~~~v~~l 1342 (1470)
||.++...+. +.+|++++|+||+| .+|. -|+++|+.... . .+ ++++.++++.+++.+
T Consensus 312 ~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 386 (501)
T PRK10762 312 DGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----- 386 (501)
T ss_pred CCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-----
Confidence 9999987665 34678899999997 3554 59999996310 0 11 223555666665420
Q ss_pred ccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-
Q 000475 1343 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID- 1420 (1470)
Q Consensus 1343 p~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~- 1420 (1470)
+..|.++ ..||||||||++|||||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..
T Consensus 387 -~~~~~~~----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~ 461 (501)
T PRK10762 387 -PSMEQAI----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGM 461 (501)
T ss_pred -CCccCch----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh
Confidence 1133333 4699999999999999999999999999999999999999999999864 47899999999999876
Q ss_pred cCEEEEEeCCEEEEecChhHHh
Q 000475 1421 NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1421 ~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
||+|++|++|++++.|+++++.
T Consensus 462 ~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 462 SDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred CCEEEEEECCEEEEEeccccCC
Confidence 9999999999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=627.54 Aligned_cols=445 Identities=22% Similarity=0.362 Sum_probs=338.9
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357888 99999999999999999999999999999999999987 6665
Q ss_pred -----EeEEEcCCCCCCC-ccHHHHHhcCCCCC---HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHH
Q 000475 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~eNI~~g~~~~---~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1470)
.++|++|++.++. .|++||+.++.... +++.+++++..++.. ....+..+|||||||||+
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHH
Confidence 2789999987655 69999999975432 123334444444422 224567799999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHHh
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
|||||+.+|+++||||||++||+.....+.+. ++.+ .+++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999998888764 4443 357999999999999865 99999999999999888776543
Q ss_pred hchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHHHhc
Q 000475 809 DQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVY 888 (1470)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~ 888 (1470)
+ +..+... . . .. .+ .
T Consensus 230 ~---~~~~~~~------~-----------------------~----~~-----~~----------~-------------- 244 (510)
T PRK15439 230 D---DIIQAIT------P-----------------------A----AR-----EK----------S-------------- 244 (510)
T ss_pred H---HHHHHHh------C-----------------------c----cc-----cc----------c--------------
Confidence 1 0000000 0 0 00 00 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 889 KGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMIT 968 (1470)
Q Consensus 889 ~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~ 968 (1470)
..
T Consensus 245 -------------------------------~~----------------------------------------------- 246 (510)
T PRK15439 245 -------------------------------LS----------------------------------------------- 246 (510)
T ss_pred -------------------------------cc-----------------------------------------------
Confidence 00
Q ss_pred HHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 000475 969 SVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNT 1048 (1470)
Q Consensus 969 ~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~ 1048 (1470)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK15439 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 000475 1049 ARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1128 (1470)
Q Consensus 1049 ~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~ 1128 (1470)
..
T Consensus 247 --------~~---------------------------------------------------------------------- 248 (510)
T PRK15439 247 --------AS---------------------------------------------------------------------- 248 (510)
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCC
Q 000475 1129 INLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNS 1208 (1470)
Q Consensus 1129 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1208 (1470)
++. . ...|...+
T Consensus 249 ------------------------------------------------------------~~~-~-~~~~~~~~------ 260 (510)
T PRK15439 249 ------------------------------------------------------------QKL-W-LELPGNRR------ 260 (510)
T ss_pred ------------------------------------------------------------ccc-c-cccccccc------
Confidence 000 0 00000000
Q ss_pred CCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC
Q 000475 1209 RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1288 (1470)
Q Consensus 1209 ~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i 1288 (1470)
.++ +..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...
T Consensus 261 ~~~---~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~ 330 (510)
T PRK15439 261 QQA---AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL 330 (510)
T ss_pred ccC---CCCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC
Confidence 000 0112489999983 169999999999999999999999999999999999999999999999999887
Q ss_pred CHHH-HhcccEEEccCC---CCCcc-cHHHhcCcC-----CC--CC---HHHHHHHHHHcCcHHHHHhcccccCccccCC
Q 000475 1289 GLQD-LRSRLSIIPQDP---MLFQG-TVRTNLDPL-----EQ--HS---DQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1353 (1470)
Q Consensus 1289 ~l~~-LR~~isiIpQdp---~LF~g-TIR~NLdp~-----~~--~s---d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~ 1353 (1470)
+... .|++++|+||+| .+|.. |+++|+... .. .. ++++.++++..++. ++..|.++
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~--- 401 (510)
T PRK15439 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAA--- 401 (510)
T ss_pred CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCcc---
Confidence 7654 567899999996 36654 999998421 10 11 12344555555542 12234444
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000475 1354 GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1431 (1470)
Q Consensus 1354 G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1431 (1470)
..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+
T Consensus 402 -~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 402 -RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred -ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999998753 47999999999999976 99999999999
Q ss_pred EEEecChhHHhhc
Q 000475 1432 VLEYDSPRQLLED 1444 (1470)
Q Consensus 1432 vvE~g~p~~Ll~~ 1444 (1470)
+++.|+++++.++
T Consensus 481 i~~~~~~~~~~~~ 493 (510)
T PRK15439 481 ISGALTGAAINVD 493 (510)
T ss_pred EEEEEccccCCHH
Confidence 9999999887643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-64 Score=626.46 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEcCEeCCCCCH-HHHhc
Q 000475 1219 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SGGRILIDGVDISMIGL-QDLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-~~G~I~IDG~dI~~i~l-~~LR~ 1295 (1470)
-|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999432 23599999999999999999999999999999999999995 89999999999975443 56788
Q ss_pred ccEEEccCC---CCCc-ccHHHhcCcC-----CC---CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000475 1296 RLSIIPQDP---MLFQ-GTVRTNLDPL-----EQ---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1359 (1470)
Q Consensus 1296 ~isiIpQdp---~LF~-gTIR~NLdp~-----~~---~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSg 1359 (1470)
+++++||++ .+|. .|+++|+... .. .. .+++.++++++++.+ .-.|.++ ..|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI----GRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc----ccCCH
Confidence 999999996 3665 4999999642 11 11 123556666665521 1134444 46999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000475 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1360 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~ 1437 (1470)
|||||++|||||+++|++|+|||||++||+.+.+.+++.|++.. ++.|||+|||+++.+.. ||+|++|++|+++...+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999988753 47899999999999976 99999999999998876
Q ss_pred hhHH
Q 000475 1438 PRQL 1441 (1470)
Q Consensus 1438 p~~L 1441 (1470)
..++
T Consensus 487 ~~~~ 490 (500)
T TIGR02633 487 NHAL 490 (500)
T ss_pred cccC
Confidence 5543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=642.82 Aligned_cols=216 Identities=17% Similarity=0.200 Sum_probs=188.1
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcc
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1296 (1470)
...|+++|++++|+.+...+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++.+ ..++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34599999999997533469999999999999999999999999999999999999999999999999975 46678899
Q ss_pred cEEEccCCCCCcc-cHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
|||+||++.++.. |+||||..+ ...+. +.+.++++.++|.++.. ..+ ..||||||||+++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-------k~~----~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-------RLA----GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-------CCh----hhCCHHHHHHHHHH
Confidence 9999999988865 999999642 11222 33556788888876543 333 35999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||+.+|+||+|||||++||+.+.+.+++.|++. .+++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999885 357999999999999976 999999999999999999999754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=620.68 Aligned_cols=433 Identities=24% Similarity=0.351 Sum_probs=329.6
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. ...+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 5889999999963 257888 99999999999999999999999999999999999986 6654
Q ss_pred -----EeEEEcCCCCCCC-ccHHHHHhcCCC------CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~eNI~~g~~------~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.++|++|++.++. .|++||+.++.. .+. ++.+++++.+++. .....+..+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCH
Confidence 3799999987765 599999998642 111 1222333333332 112456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
|||||++||||++.+|+++||||||++||+.+...+.+. +..+ .+++|+|+|||+++++.. ||+|++|++|+++..+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV-IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999998888764 4433 357899999999999865 9999999999987543
Q ss_pred ChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHH
Q 000475 802 KYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYS 881 (1470)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 881 (1470)
+..+ . . . .+ +
T Consensus 223 ~~~~--~-~----------------------------------~---~~------------------~------------ 232 (501)
T PRK11288 223 DDMA--Q-V----------------------------------D---RD------------------Q------------ 232 (501)
T ss_pred Cccc--c-C----------------------------------C---HH------------------H------------
Confidence 2100 0 0 0 00 0
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 882 AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQR 961 (1470)
Q Consensus 882 ~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 961 (1470)
+..
T Consensus 233 -~~~---------------------------------------------------------------------------- 235 (501)
T PRK11288 233 -LVQ---------------------------------------------------------------------------- 235 (501)
T ss_pred -HHH----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000475 962 LFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI 1041 (1470)
Q Consensus 962 l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~ 1041 (1470)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T PRK11288 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000475 1042 WYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGT 1121 (1470)
Q Consensus 1042 ~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1121 (1470)
.+. .
T Consensus 236 ---------------~~~-----------~-------------------------------------------------- 239 (501)
T PRK11288 236 ---------------AMV-----------G-------------------------------------------------- 239 (501)
T ss_pred ---------------Hhc-----------C--------------------------------------------------
Confidence 000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Q 000475 1122 MEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1201 (1470)
Q Consensus 1122 ~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1201 (1470)
. .. ++. .+.++
T Consensus 240 ---------------------------~-~~------------------------------------~~~-----~~~~~ 250 (501)
T PRK11288 240 ---------------------------R-EI------------------------------------GDI-----YGYRP 250 (501)
T ss_pred ---------------------------C-Cc------------------------------------ccc-----ccccc
Confidence 0 00 000 00000
Q ss_pred ccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEc
Q 000475 1202 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281 (1470)
Q Consensus 1202 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID 1281 (1470)
.+ +....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|
T Consensus 251 -------~~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 313 (501)
T PRK11288 251 -------RP----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLD 313 (501)
T ss_pred -------cC----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEEC
Confidence 00 01124889999742 38999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCH-HHHhcccEEEccCCC---CCc-ccHHHhcCcCC--C-------CC----HHHHHHHHHHcCcHHHHHhcc
Q 000475 1282 GVDISMIGL-QDLRSRLSIIPQDPM---LFQ-GTVRTNLDPLE--Q-------HS----DQEIWEVINKCHLAEIVRQDQ 1343 (1470)
Q Consensus 1282 G~dI~~i~l-~~LR~~isiIpQdp~---LF~-gTIR~NLdp~~--~-------~s----d~eI~~aL~~~~L~~~v~~lp 1343 (1470)
|.++...+. +..|++++|+||+|. +|. .|+.+|+.... . .. ++++.+.++.+++. +
T Consensus 314 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~ 387 (501)
T PRK11288 314 GKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------T 387 (501)
T ss_pred CEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------c
Confidence 999875443 456789999999973 554 69999986321 0 01 12355666666552 1
Q ss_pred cccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-c
Q 000475 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-N 1421 (1470)
Q Consensus 1344 ~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~ 1421 (1470)
+..++++ .+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. |
T Consensus 388 ~~~~~~~----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~ 463 (501)
T PRK11288 388 PSREQLI----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVA 463 (501)
T ss_pred CCccCcc----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhC
Confidence 1234444 4699999999999999999999999999999999999999999998753 47899999999999966 9
Q ss_pred CEEEEEeCCEEEEecChhHHh
Q 000475 1422 DLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1422 DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|+|++|++|++++.|++.+..
T Consensus 464 d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 464 DRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CEEEEEECCEEEEEEccccCC
Confidence 999999999999999987755
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=605.06 Aligned_cols=533 Identities=19% Similarity=0.257 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1470)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~r 348 (1470)
.++.+++.+.+..++.++..++..+.|+++..+++.+..... . +. +++.+++..++..+......+...++..+
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD---I--FP-LLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888999999999999999997754321 1 11 11111111222222222234456677788
Q ss_pred HHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000475 349 VRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1470)
Q Consensus 349 ir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~ 424 (1470)
+|..+...+|+|.++++. ...+.|++++.++.|++.+.+.+. .+..+....+..++.+++++ .++|+.+++.+++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~l~~ 165 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL-FMNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 888889999999998764 334999999999999999876543 22233222222222222222 3443555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000475 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI----ERDSLKKYLYTCSA 500 (1470)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~----E~~~l~~~~~~~~~ 500 (1470)
+++...+...+.++.++.+++.++..++......|.++|++.||.|+.|+.+.+++.+.-++ +.+..+.......+
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVL 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677888888899999999999999999999999999999999999877777655333 22222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C
Q 000475 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-I 579 (1470)
Q Consensus 501 ~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~-~ 579 (1470)
..+ ......+.+++++++.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..+++.+. .
T Consensus 246 ~~~--~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 246 NRA--ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 211 1112234456778888888999999999999999999999999999999999999999999999976542211 1
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEEC
Q 000475 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1470)
Q Consensus 580 ~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1470)
...+....+..|+++|++|+|+++ .+.+++ |+++++|++++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~ 395 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LID 395 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EEC
Confidence 111111123469999999999742 357999 99999999999999999999999999999999999986 787
Q ss_pred C-------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 659 g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
| .++||||+|++|++||+|||.++++ .++++.+++++.+++++.++.+|+|.+|.+|++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 7 4799999999999999999999964 5678888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChh
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 804 (1470)
||||++||||++++|+|++||||||+||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|++.+.|+++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~-l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAA-LDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998765 44455689999999999999999999999999999999999
Q ss_pred hHHhhchhHHHHHHHH
Q 000475 805 DLIADQNSELVRQMKA 820 (1470)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1470)
++.+ .+..+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (588)
T PRK13657 555 ELVA-RGGRFAALLRA 569 (588)
T ss_pred HHHH-CCChHHHHHHH
Confidence 9987 45666666553
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=605.68 Aligned_cols=541 Identities=19% Similarity=0.260 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1470)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1470)
++.+++.+++.+.+..++.++..++.++.|+++..+++.+-...+ ... ...+++.+++..++..+......+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-SGL--LNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888889999999999999999997432221 111 11122222233333344444455667788
Q ss_pred HHHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1470)
Q Consensus 346 g~rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~ 421 (1470)
+.++...+...+|+|.++.+.. ..+.|+++|.+++|++.+.+++. .+..++...+.+++++++++..-. +.+++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 9999999999999999987543 34889999999999999988764 344444444444444444433222 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1470)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1470)
++.+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.+++++..++..+...+........
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455667888888899999999999999999999999999999999988888877554444333322222221
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-C
Q 000475 502 AFLF--WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK-P 578 (1470)
Q Consensus 502 ~~~~--~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~-~ 578 (1470)
..+. ......+.++.++++.+..+.++.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+ .
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 1111 111223444556777778889999999999999999999999999999999999999999999998654211 1
Q ss_pred CCC-CCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEE
Q 000475 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1470)
Q Consensus 579 ~~~-~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1470)
... .........|+++|++|+|+++ ...+.+++ ||+++|||+++|+|+||||||||+++|+|+++|.+|++ .
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~ 398 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-L 398 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-E
Confidence 111 1111123469999999999854 22578999 99999999999999999999999999999999999986 7
Q ss_pred ECC-------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 657 ~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
++| .++||||+|++|++||+|||.+|.+ .++++.+++++.+++.++++.+|+|.+|.+|++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 877 4799999999999999999999875 46778889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 802 (1470)
||||||++||||++++|++++||||||+||+++++.+++ .+....+++|+|+|||+++.++.+|+|++|++|++++.|+
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 999999999999999999999999999999999887765 4555667899999999999999999999999999999999
Q ss_pred hhhHHhhchhHHHHHH
Q 000475 803 YEDLIADQNSELVRQM 818 (1470)
Q Consensus 803 ~~~l~~~~~~~~~~~~ 818 (1470)
++++.+ ++..+.++.
T Consensus 558 ~~~l~~-~~~~~~~l~ 572 (576)
T TIGR02204 558 HAELIA-KGGLYARLA 572 (576)
T ss_pred HHHHHH-cCChHHHHH
Confidence 999887 555555443
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=601.15 Aligned_cols=500 Identities=17% Similarity=0.195 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1470)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1470)
..++.+++.++...++.++..++..+.|++++.+++.+..... ... -+.+..++++..++..+......+...+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLY-LSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888888899999999999999987653221 111 0111111112223333433334445667788
Q ss_pred HHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000475 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1470)
Q Consensus 348 rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~-~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~ 423 (1470)
++...+...+|+|.++++.. ..++|+++|.+++|++++.+.+.... .+....+.+++++++++ .++|..+++.++
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~l~~l~ 161 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIA-LLSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 88899999999999988764 33899999999999999998876433 34444444444444443 334355555544
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 424 STIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1470)
Q Consensus 424 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1470)
.++++..+...+ .+..++..++..+..++..+...|.++|+++||.|++|+.+.+++++..++..+...+.....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333 3444556677778889999999999999999999999999999998876655554444444333333
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000475 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1470)
Q Consensus 503 ~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 580 (1470)
.+..... ..+.++.++.+.+.++.++.+.+.+++.+...+..|+..++..+..+.++++|.+|+.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 2222222 22334456777778889999999999999999999999999999999999999999999997665211111
Q ss_pred -C--CCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEE
Q 000475 581 -E--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1470)
Q Consensus 581 -~--~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~ 656 (1470)
. .+.......|+++|++|+|+++ ++.|+| ||++++||+++|+||+|||||||+++|+|+++|++|++ .
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~ 393 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV-T 393 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-E
Confidence 0 0011123469999999999753 358999 99999999999999999999999999999999999996 8
Q ss_pred ECC------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 657 VHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 657 ~~g------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
++| .++||||+|++|++||+|||.+|.+ .++++++++++.|+++++++.+|+|.+|.+||+|.+|||
T Consensus 394 i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 394 LDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred ECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 888 6899999999999999999999865 578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCc
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 780 (1470)
|||||++||||++++|+|++|||||||||+++++.+.+. +....+++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~-l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLED-LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999998775 44566789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=600.21 Aligned_cols=521 Identities=20% Similarity=0.231 Sum_probs=410.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1470)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir 350 (1470)
+.+++.++...++.++..++..+.|++++.+++.+-.... ... .+.+++++++..++..++.....+...+++.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPT-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888899999999999999986643221 111 2334445555556666666666777888999999
Q ss_pred HHHHHHHHHHhcccccCCCCHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000475 351 SALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1470)
Q Consensus 351 ~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~~--~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~ 428 (1470)
..+...+|+|.++++.. ..+...+.+++|++++.+++.. +..+...++.++..+ +++. +.|+.+++.+++++++
T Consensus 79 ~~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 79 GALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLL-VCFL-LHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHH-HhhHHHHHHHHHHHHH
Confidence 99999999999988763 3456678889999999987653 333444444433332 2332 2224444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1470)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (1470)
+.+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888889999999999999999999999999999999999988776655544443333333322222111
Q ss_pred H--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000475 509 P--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1470)
Q Consensus 509 p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 586 (1470)
. ..+.+++++.+.+.++.+|++.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.+.... ...
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~ 312 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCC
Confidence 1 223455678888888999999999999999999999999999999999999999999999976553221111 111
Q ss_pred CCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC------
Q 000475 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1470)
Q Consensus 587 ~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------ 659 (1470)
.+..++++|++|+|+++ ..+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 313 ~~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~ 385 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQW 385 (544)
T ss_pred CCCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhC
Confidence 23469999999999753 2467899 99999999999999999999999999999999999986 7776
Q ss_pred -------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHH
Q 000475 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1470)
Q Consensus 660 -------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1470)
.++||||+|+++++|++|||.++.+ .+++++.++++.+++++.++.+|+|.+|.+|++|.+||||||||++|
T Consensus 386 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred CHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 3799999999999999999996654 67888889999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHh
Q 000475 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 732 ARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
|||++++|+++|||||||+||+++++.+.+. +.... +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999998888764 44443 6899999999999888899999999999999999988864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-63 Score=615.19 Aligned_cols=430 Identities=21% Similarity=0.333 Sum_probs=324.3
Q ss_pred eeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-------------
Q 000475 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1470)
Q Consensus 594 ~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------------- 659 (1470)
+|++++|++ .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHHh
Confidence 577888853 357888 99999999999999999999999999999999999986 6665
Q ss_pred -EeEEEcCCCCCC-CccHHHHHhcCCC-C-----CHHH----HHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 660 -KKAYVPQSSWIQ-TGTIRENILFGKD-M-----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 660 -~~ayv~Q~~~i~-~~Ti~eNI~~g~~-~-----~~~~----y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
.++|++|++.++ +.|++||+.++.. . +.+. .+++++.+++ ......+..+|||||||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-----------DIDPRAKVATLSVSQMQ 141 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHH
Confidence 379999998764 5699999998642 1 1111 1222222222 12234567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhh
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 805 (1470)
||+||||++.+|+++||||||++||+.+...+.+. +..+ .+++|+|++||+++++.. ||+|++|++|++++.|+.++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 99999999999999999999999999998888764 4443 357899999999999865 99999999999987765433
Q ss_pred HHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHHH
Q 000475 806 LIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFIT 885 (1470)
Q Consensus 806 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 885 (1470)
+... + ...
T Consensus 221 ~~~~----------------------------------------~--------------------------------~~~ 228 (491)
T PRK10982 221 LTMD----------------------------------------K--------------------------------IIA 228 (491)
T ss_pred CCHH----------------------------------------H--------------------------------HHH
Confidence 2100 0 000
Q ss_pred HhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 886 LVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965 (1470)
Q Consensus 886 ~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ 965 (1470)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000475 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQV 1045 (1470)
Q Consensus 966 l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~ 1045 (1470)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 000475 1046 VNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1125 (1470)
Q Consensus 1046 ~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1125 (1470)
.++ +
T Consensus 229 -----------~~~-----------------------------------~------------------------------ 232 (491)
T PRK10982 229 -----------MMV-----------------------------------G------------------------------ 232 (491)
T ss_pred -----------HHh-----------------------------------C------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Q 000475 1126 CLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI 1205 (1470)
Q Consensus 1126 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~ 1205 (1470)
. . + .+ ..+.+.
T Consensus 233 -----------------------~-~---------------------------------~---~~-----~~~~~~---- 243 (491)
T PRK10982 233 -----------------------R-S---------------------------------L---TQ-----RFPDKE---- 243 (491)
T ss_pred -----------------------C-C---------------------------------c---cc-----cccccc----
Confidence 0 0 0 00 000000
Q ss_pred CCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeC
Q 000475 1206 KNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1285 (1470)
Q Consensus 1206 ~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI 1285 (1470)
.+ +....|+++|++++| ..+|+|+||++++||++||+|+||||||||+++|.|+.+|++|+|.+||.++
T Consensus 244 ---~~----~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 312 (491)
T PRK10982 244 ---NK----PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI 312 (491)
T ss_pred ---CC----CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEEC
Confidence 00 111258999999875 2489999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHH-HhcccEEEccCCC---CCcc-cHHHh-----cCcC----CCCCH----HHHHHHHHHcCcHHHHHhcccccC
Q 000475 1286 SMIGLQD-LRSRLSIIPQDPM---LFQG-TVRTN-----LDPL----EQHSD----QEIWEVINKCHLAEIVRQDQRLLD 1347 (1470)
Q Consensus 1286 ~~i~l~~-LR~~isiIpQdp~---LF~g-TIR~N-----Ldp~----~~~sd----~eI~~aL~~~~L~~~v~~lp~gLd 1347 (1470)
...+..+ +|+.++|+||++. +|.. |+++| +... +..+. +++.+.++..++. .+.+|
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~ 386 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHR 386 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCcc
Confidence 8776544 5788999999963 5653 77666 3211 11121 2234444444432 11234
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEE
Q 000475 1348 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVL 1425 (1470)
Q Consensus 1348 t~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIl 1425 (1470)
.++ ..||||||||++||||++++|+||+|||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||||+
T Consensus 387 ~~~----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~ 462 (491)
T PRK10982 387 TQI----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRIL 462 (491)
T ss_pred ccc----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEE
Confidence 444 4699999999999999999999999999999999999999999997743 57999999999999976 99999
Q ss_pred EEeCCEEEEecChhHHh
Q 000475 1426 VLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1426 vL~~G~vvE~g~p~~Ll 1442 (1470)
+|++|+++..+++.++.
T Consensus 463 ~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 463 VMSNGLVAGIVDTKTTT 479 (491)
T ss_pred EEECCEEEEEEccccCC
Confidence 99999999888775443
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=599.75 Aligned_cols=524 Identities=21% Similarity=0.267 Sum_probs=409.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000475 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI 364 (1470)
Q Consensus 285 l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy~K~L~l 364 (1470)
++..++..+.|++++.+++.+..... .... .+.+++.+++..++..++.....+...+.+.++...+...+|+|.+++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHM-TTGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555667789999999997754321 1111 233344444444455555544455566788888999999999999987
Q ss_pred ccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 365 KFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1470)
Q Consensus 365 s~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~~~~~ 440 (1470)
+.. ..++|+++|.+++|++.+..... .+..++..++..++++++++..++|..+++.++++++.+.+...+.++..
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 45899999999999999986653 34555555555555555554456756667666666666677777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000475 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS--PTLVSVITFG 518 (1470)
Q Consensus 441 ~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~--p~~v~~~~f~ 518 (1470)
+..++.++..++..+.+.|.++|+++||.|++|+.+.++..+..++..+...+.....+....+.... -..+.++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999888777654332222222222222211111111 1223345567
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 000475 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1470)
Q Consensus 519 ~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~i~~~~~~f 598 (1470)
.+.+.++.++.+.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.+.... +....+..|+++|++|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEEE
Confidence 777888999999999999999999999999999999999999999999999986542111111 1111234699999999
Q ss_pred EeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-------------eEEE
Q 000475 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYV 664 (1470)
Q Consensus 599 ~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------------~ayv 664 (1470)
+|+.+ ..+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|. ++||
T Consensus 322 ~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 322 TYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred ECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEEE
Confidence 99753 2467899 99999999999999999999999999999999999996 77763 6999
Q ss_pred cCCCCCCCccHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEE
Q 000475 665 PQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1470)
Q Consensus 665 ~Q~~~i~~~Ti~eNI~~g~-~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~l 743 (1470)
+|+|++|++|++|||.+|. +.++++++++++.+++++++..+|+|.+|.+|++|.+||||||||++||||++++|+++|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999996 467888899999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhchhHHHHHHHH
Q 000475 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1470)
Q Consensus 744 LDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1470)
||||||+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++.+ ....+.++...
T Consensus 475 lDEpts~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~ 549 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRY 549 (569)
T ss_pred EECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHH
Confidence 9999999999999988765 555567899999999999999999999999999999999999987 45556665543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=614.43 Aligned_cols=203 Identities=21% Similarity=0.287 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 35999999999964 3599999999999999999999999999999999999999999999964 2 169
Q ss_pred EEEccCC-CCCcc-cHHHhcCcCCC-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1298 SIIPQDP-MLFQG-TVRTNLDPLEQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1298 siIpQdp-~LF~g-TIR~NLdp~~~-----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
+|+||++ .++.. |+++|+..... ..+++..++++..++.+. .++.++ ..||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV----GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch----hhCCHHHHHHHHHHHH
Confidence 9999997 56654 99999863211 123345566777666321 123333 4699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeC-CEEEE-ecChhHHhhcC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE-GKVLE-YDSPRQLLEDN 1445 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~-G~vvE-~g~p~~Ll~~~ 1445 (1470)
++.+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+ .|++.++++++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999875 3 499999999999876 999999996 88875 67787777653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-60 Score=597.62 Aligned_cols=537 Identities=20% Similarity=0.248 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDH-SSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1470)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~-~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 346 (1470)
.++.+++.+++..++.++..++....|.++..+++... ..... .... .+..++++++..++..++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888999999999999999998542 21100 0011 111122233333444455444556677888
Q ss_pred HHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000475 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1470)
Q Consensus 347 ~rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l 422 (1470)
.++...+...+|+|.++++.. ..++|++++.+++|++++.+++.. +..+....+.+++++++++ .+.|..+++.+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLS-FFDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999988653 348999999999999999998754 3444444445544444443 23334444443
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 423 FSTIFVM-VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1470)
Q Consensus 423 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1470)
+++++.. .+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 234556677788888888899999999999999999999999999988888777544433333333332222
Q ss_pred HHHHHH-HH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000475 502 AFLFWA-SP-TLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1470)
Q Consensus 502 ~~~~~~-~p-~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~-l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~ 578 (1470)
..+... .. ..+.++.++.+. .++.++.+..++++.+... ...|+..++..+..+.++++|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 222111 11 122334455555 4677899988887766544 4568889999999999999999999999987642111
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEE
Q 000475 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1470)
Q Consensus 579 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~ 657 (1470)
............|+++|++|+|+++ ..+.|+| ||++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 399 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LL 399 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111223569999999999753 2468999 99999999999999999999999999999999999996 78
Q ss_pred CCE-------------eEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 658 HGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 658 ~g~-------------~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
+|. ++||+|+|++|++||+|||.+|.+ .++++..++++.++++++++. |+|.+|.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 773 699999999999999999999875 577888999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecCh
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 803 (1470)
|||||++||||++++|++++||||||+||+++++.+.+. +....+++|+|+|||+++.++.||+|++|++|++++.|++
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999998888764 5556678999999999999999999999999999999999
Q ss_pred hhHHhhchhHHHHHH
Q 000475 804 EDLIADQNSELVRQM 818 (1470)
Q Consensus 804 ~~l~~~~~~~~~~~~ 818 (1470)
+|+++ .+..+.++.
T Consensus 558 ~~l~~-~~g~y~~l~ 571 (574)
T PRK11160 558 QELLA-QQGRYYQLK 571 (574)
T ss_pred HHHHh-cCcHHHHHH
Confidence 99987 555555543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=613.06 Aligned_cols=481 Identities=22% Similarity=0.310 Sum_probs=332.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEEC--CEeEEEcC
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~--g~~ayv~Q 666 (1470)
.++++|++++|+++ .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++ ..++||+|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58899999999622 357889 99999999999999999999999999999999999997 665 46999999
Q ss_pred CCCCC-CccHHHHHhcCCCC------------------CH---------HHHHHHHHHhcch---HHHHhcc-CCCcccc
Q 000475 667 SSWIQ-TGTIRENILFGKDM------------------RQ---------SFYEEVLEGCALN---QDIEMWA-DGDLSVV 714 (1470)
Q Consensus 667 ~~~i~-~~Ti~eNI~~g~~~------------------~~---------~~y~~v~~~~~l~---~d~~~l~-~g~~t~i 714 (1470)
+|+++ +.|++|||.++... +. .++.++++.++.. ..++.+- .-.....
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 155 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW 155 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcc
Confidence 99886 46999999876310 01 1223334444422 1111110 0011123
Q ss_pred cCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEe
Q 000475 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1470)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~ 793 (1470)
+....+|||||||||+||||++.+|+++||||||++||+++...+.+ .+... ++|+|+|||+++++.. ||+|++|+
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEE
Confidence 56778999999999999999999999999999999999999887765 45544 4699999999999876 99999999
Q ss_pred CCEEE-EecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhc
Q 000475 794 DGKIE-QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTEL 872 (1470)
Q Consensus 794 ~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 872 (1470)
+|+++ +.|+++++.+...............
T Consensus 233 ~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 263 (552)
T TIGR03719 233 RGRGIPWEGNYSSWLEQKEKRLEQEEKEESA------------------------------------------------- 263 (552)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 99975 7899988865211111000000000
Q ss_pred CcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHH
Q 000475 873 GRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952 (1470)
Q Consensus 873 g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 952 (1470)
+...+... .-|+
T Consensus 264 -------~~~~~~~~-----------------------~~~~-------------------------------------- 275 (552)
T TIGR03719 264 -------RQKALKRE-----------------------LEWV-------------------------------------- 275 (552)
T ss_pred -------HHHHHHHH-----------------------HHHH--------------------------------------
Confidence 00000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000475 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1470)
Q Consensus 953 ~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1032 (1470)
T Consensus 276 -------------------------------------------------------------------------------- 275 (552)
T TIGR03719 276 -------------------------------------------------------------------------------- 275 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHH
Q 000475 1033 FLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1112 (1470)
Q Consensus 1033 ~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~ 1112 (1470)
. +. ...++ + +.
T Consensus 276 -----------~------------~~--~~~~~---------------------------~---------~~-------- 286 (552)
T TIGR03719 276 -----------R------------SS--PKARQ---------------------------A---------KS-------- 286 (552)
T ss_pred -----------H------------hh--hhhHH---------------------------H---------HH--------
Confidence 0 00 00000 0 00
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 1113 CVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERIL 1192 (1470)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~ 1192 (1470)
+......++..
T Consensus 287 ---------------------------------------------------------------------~~~~~~~~~~~ 297 (552)
T TIGR03719 287 ---------------------------------------------------------------------KARLARYEELL 297 (552)
T ss_pred ---------------------------------------------------------------------HHHHHHHHhhh
Confidence 00000001111
Q ss_pred HHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 000475 1193 QFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1193 ~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~ 1272 (1470)
+. . ++..+.......+...-+....|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+
T Consensus 298 ~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 373 (552)
T TIGR03719 298 SQ-E-FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373 (552)
T ss_pred hh-c-ccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 00 0 0000000000000000011235999999999964 359999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCEeCCCCCHHHHhcccEEEccCCC-CCc-ccHHHhcCcCC---CC--CHHHHHHHHHHcCcHHHHHhcccc
Q 000475 1273 PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQ-GTVRTNLDPLE---QH--SDQEIWEVINKCHLAEIVRQDQRL 1345 (1470)
Q Consensus 1273 p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~-LF~-gTIR~NLdp~~---~~--sd~eI~~aL~~~~L~~~v~~lp~g 1345 (1470)
|++|+|.+++ ++ +++|+||++. ++. -|+++|+.... .. .+.+..++++..++.+. -
T Consensus 374 p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~ 436 (552)
T TIGR03719 374 PDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS------D 436 (552)
T ss_pred CCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh------H
Confidence 9999999965 21 6999999973 564 49999996421 11 13344566666665321 1
Q ss_pred cCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEE
Q 000475 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLV 1424 (1470)
Q Consensus 1346 Ldt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrI 1424 (1470)
.|.++ ..||||||||++|||||+.+|++|+|||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|
T Consensus 437 ~~~~~----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i 510 (552)
T TIGR03719 437 QQKKV----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHI 510 (552)
T ss_pred hcCch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEE
Confidence 23333 469999999999999999999999999999999999999999999986 3 489999999999876 9999
Q ss_pred EEEeC-CEEEEe-cChhHHhh
Q 000475 1425 LVLDE-GKVLEY-DSPRQLLE 1443 (1470)
Q Consensus 1425 lvL~~-G~vvE~-g~p~~Ll~ 1443 (1470)
++|++ |+++++ |++.++.+
T Consensus 511 ~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 511 LAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EEEECCCeEEEeCCCHHHHHH
Confidence 99997 688754 66666554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=614.96 Aligned_cols=439 Identities=21% Similarity=0.295 Sum_probs=330.7
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.. ..+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSDT--------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCCe--------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHH
Confidence 37899999999632 47889 99999999999999999999999999999999999986 5544
Q ss_pred ----EeEEEcCCCCC---------CCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 ----KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 ----~~ayv~Q~~~i---------~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++|++|++.. +..|++||+.++.+ +.++.+++++..++.+. .+....+||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~ 141 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGET 141 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHH
Confidence 16899998643 14599999876532 23445556666655432 2356679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 804 (1470)
||++||||++.+|+++||||||++||+.....+.+. +..+ .+++|+|++||+++++.. ||+|++|++|+++..|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAEL-LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998888764 4443 347899999999999875 9999999999999888766
Q ss_pred hHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHHH
Q 000475 805 DLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFI 884 (1470)
Q Consensus 805 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 884 (1470)
++.... ....... .+ . +
T Consensus 221 ~~~~~~--~~~~~~~-----------------------------~~----~--------~-------------------- 237 (490)
T PRK10938 221 EILQQA--LVAQLAH-----------------------------SE----Q--------L-------------------- 237 (490)
T ss_pred HHhcch--hhhhhhh-----------------------------hh----c--------c--------------------
Confidence 543200 0000000 00 0 0
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 885 TLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFL 964 (1470)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 964 (1470)
. ..
T Consensus 238 ---------------------------------~-~~------------------------------------------- 240 (490)
T PRK10938 238 ---------------------------------E-GV------------------------------------------- 240 (490)
T ss_pred ---------------------------------C-cc-------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000475 965 NMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQ 1044 (1470)
Q Consensus 965 ~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~ 1044 (1470)
+
T Consensus 241 ---------~---------------------------------------------------------------------- 241 (490)
T PRK10938 241 ---------Q---------------------------------------------------------------------- 241 (490)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 000475 1045 VVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1124 (1470)
Q Consensus 1045 ~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1124 (1470)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Q 000475 1125 LCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1204 (1470)
Q Consensus 1125 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1204 (1470)
.+. ..+...
T Consensus 242 ----------------------~~~------------------------------------------------~~~~~~- 250 (490)
T PRK10938 242 ----------------------LPE------------------------------------------------PDEPSA- 250 (490)
T ss_pred ----------------------cCc------------------------------------------------cccccc-
Confidence 000 000000
Q ss_pred cCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEcCE
Q 000475 1205 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-SGGRILIDGV 1283 (1470)
Q Consensus 1205 ~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-~~G~I~IDG~ 1283 (1470)
.. ..+ +....|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.++|.
T Consensus 251 -~~-~~~---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~ 323 (490)
T PRK10938 251 -RH-ALP---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGR 323 (490)
T ss_pred -cc-ccC---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecc
Confidence 00 000 01225999999999964 3599999999999999999999999999999999998875 6999999998
Q ss_pred eCCC-CCHHHHhcccEEEccCCCCCc---ccHHHhcCcC--------CCCC---HHHHHHHHHHcCcHHHHHhcccccCc
Q 000475 1284 DISM-IGLQDLRSRLSIIPQDPMLFQ---GTVRTNLDPL--------EQHS---DQEIWEVINKCHLAEIVRQDQRLLDA 1348 (1470)
Q Consensus 1284 dI~~-i~l~~LR~~isiIpQdp~LF~---gTIR~NLdp~--------~~~s---d~eI~~aL~~~~L~~~v~~lp~gLdt 1348 (1470)
++.. ......|++++++||++.++. .|+++++... .... ++++.++++.+++.+. -+|.
T Consensus 324 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~ 397 (490)
T PRK10938 324 RRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR------TADA 397 (490)
T ss_pred cCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh------hccC
Confidence 7642 233457889999999986542 4777776421 1111 2356677888777531 1233
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh--cCEE
Q 000475 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-R-CTVITVAHRIPTVID--NDLV 1424 (1470)
Q Consensus 1349 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~-~TVI~IAHRl~ti~~--~DrI 1424 (1470)
++ ..||||||||++|||||+++|++|+|||||++||+.+...+.+.|++..+ + +|||+|+|+++.+.. ||+|
T Consensus 398 ~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 398 PF----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred ch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE
Confidence 33 46999999999999999999999999999999999999999999988643 3 579999999999974 7999
Q ss_pred EEEeCCEEEEecC
Q 000475 1425 LVLDEGKVLEYDS 1437 (1470)
Q Consensus 1425 lvL~~G~vvE~g~ 1437 (1470)
++|++|++++.-+
T Consensus 474 ~~l~~G~i~~~~~ 486 (490)
T PRK10938 474 EFVPDGDIYRYVQ 486 (490)
T ss_pred EEecCCceEEeec
Confidence 9999999988754
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=598.31 Aligned_cols=469 Identities=17% Similarity=0.195 Sum_probs=354.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHH
Q 000475 935 FLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQ 1014 (1470)
Q Consensus 935 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~ 1014 (1470)
++.++..++.++..++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++.+++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~ 134 (547)
T PRK10522 56 GLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIIL 134 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHH
Confidence 33333445566777888889999999999999999999999999999999999999999999987654 46677788888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhh
Q 000475 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1094 (1470)
Q Consensus 1015 ~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf 1094 (1470)
+++.+++++.++|.+.++++..+++.+++. .+..+..+...+......+...+++.|.++|+.+++ +
T Consensus 135 ~i~~~~~l~~~~~~l~li~l~~~~~~~~i~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~ 201 (547)
T PRK10522 135 TLGSAAYLAWLSPKMLLVTAIWMAVTIWGG------------FVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-L 201 (547)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-c
Confidence 888888899999998877665554443322 222222233333334556778899999999999995 4
Q ss_pred chH---HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHhh-cCCCcCHHHHHHHHHHHHHHHH
Q 000475 1095 NQE---NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF-FLVLIILVTL-PRSAIDPSLAGLAATYGLNLNV 1169 (1470)
Q Consensus 1095 ~~e---~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~gl~l~y~l~l~~ 1169 (1470)
+.+ +.+.+++.+..++..+...... ++......+..++. .+.+++++.. ..+....+..+....+.+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (547)
T PRK10522 202 NRERAEYVFENEYEPDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRT 277 (547)
T ss_pred cHHHHHHHHHHHHhHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 443 3556666666665554333322 11111111111111 1111111111 0111223333333344444556
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcE
Q 000475 1170 LQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKK 1249 (1470)
Q Consensus 1170 ~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~Gek 1249 (1470)
.+..+...+.++.....+.+|+.++.+.|.|.+. +...+. |..+.|+++||+|+|+++ +++|+|+||+|++||+
T Consensus 278 pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~ 351 (547)
T PRK10522 278 PLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGEL 351 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCE
Confidence 6777788888899999999999998765543211 111111 223579999999999743 4699999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHH
Q 000475 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1329 (1470)
Q Consensus 1250 vgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~a 1329 (1470)
+||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++++||||.+|+||+++| ....+|++++++
T Consensus 352 ~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~ 428 (547)
T PRK10522 352 LFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKW 428 (547)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 245788899999
Q ss_pred HHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcE
Q 000475 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCT 1407 (1470)
Q Consensus 1330 L~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~T 1407 (1470)
++++++.+.+.. ++|. .+|.+||||||||++||||++++|+||+||||||+||++|++.|.+.+.+.. +++|
T Consensus 429 ~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t 502 (547)
T PRK10522 429 LERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKT 502 (547)
T ss_pred HHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 999998877653 4332 2478999999999999999999999999999999999999999999987654 4899
Q ss_pred EEEEecChhhhhhcCEEEEEeCCEEEEec
Q 000475 1408 VITVAHRIPTVIDNDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1408 VI~IAHRl~ti~~~DrIlvL~~G~vvE~g 1436 (1470)
+|+||||++++..||+|++|++|+++|.+
T Consensus 503 vi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 503 IFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999983
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=607.17 Aligned_cols=540 Identities=19% Similarity=0.227 Sum_probs=428.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1470)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1470)
++..++.+++.+....+..++..++.++.|++++.+++.+-.... ... -+.+++++++..++..++.....+...++
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LST-LSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777788888888888899999999999997653222 111 23334444445555556555556677788
Q ss_pred HHHHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000475 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1470)
Q Consensus 346 g~rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~ 421 (1470)
+.++...+...+|+|.++++.. .+++|+++|.+ +|++.+.+++. .+.......+.+++.+++++. ++|+.+++.
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~ 284 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFF-YSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999998653 45999999999 59999998764 333333333333334444443 343666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1470)
Q Consensus 422 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1470)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777778888888888888999999999999999999999999999998888877555444444333333332
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000475 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1470)
Q Consensus 502 ~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 579 (1470)
........ ..+.++++|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22221111 2233466788888888999999999999999999999999999999999999999999999876532211
Q ss_pred CCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEEC
Q 000475 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1470)
Q Consensus 580 ~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~ 658 (1470)
........+..|+++|++|+|+++ ..+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~id 517 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LVD 517 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Confidence 111112223569999999999754 2467999 99999999999999999999999999999999999996 888
Q ss_pred CE-------------eEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 659 GK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 659 g~-------------~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
|. ++||+|+|+++++||+|||.++.+ .+++...++++.+++++.++.+|+|.+|.+|++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 73 699999999999999999999864 6678888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChh
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 804 (1470)
||||++||||++++|+++|||||||+||+++++.+.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999888765 45556789999999999999999999999999999999999
Q ss_pred hHHhhchhHHHHHHH
Q 000475 805 DLIADQNSELVRQMK 819 (1470)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1470)
++++ .+..+.++..
T Consensus 677 ~l~~-~~~~y~~l~~ 690 (694)
T TIGR01846 677 ELLA-LQGLYARLWQ 690 (694)
T ss_pred HHHH-cCChHHHHHH
Confidence 9988 4566666543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=653.30 Aligned_cols=474 Identities=19% Similarity=0.215 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
...+.+.-..+...+++++++.|..++++..+|+++||+++|++.++... ..+..++...+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667777777889999999999999999999999999999999999875 34444554444444443333221000011
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1111 (1470)
Q Consensus 1032 ~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1111 (1470)
+.++++++++.+. .++.+..+..++.....+....+.+.|.++|+++||+|++|+.+.+++.+..++.
T Consensus 445 ~~~~v~~l~~pl~------------~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e 512 (1495)
T PLN03232 445 FGSLILFLLIPLQ------------TLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEE 512 (1495)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111111111111 2223333444444455566688899999999999999999999999988877665
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 1112 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1191 (1470)
Q Consensus 1112 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi 1191 (1470)
.+..........+.......... ++.++.+.......+.++++.+-.++++...+...+..+...+..+.+..+|.+|+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri 591 (1495)
T PLN03232 513 LSWFRKAQLLSAFNSFILNSIPV-VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRI 591 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433333332222111111 11112222223346678888888888888888888888888889999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000475 1192 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1192 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl 1270 (1470)
.++.+.+++.+. . .++ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+
T Consensus 592 ~~~L~~~~~~~~---~-~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~ 666 (1495)
T PLN03232 592 EELLLSEERILA---Q-NPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE 666 (1495)
T ss_pred HHHHcCcccccc---c-cCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 999976554221 1 111 11234579999999999753 35799999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccc
Q 000475 1271 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPV 1350 (1470)
Q Consensus 1271 ~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v 1350 (1470)
++|++|.+. .+|++|+||||+|.+|+|||||||....++++++++++++.|+|.++++.+|+|+||.|
T Consensus 667 ~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~I 734 (1495)
T PLN03232 667 LSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEI 734 (1495)
T ss_pred CcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCcee
Confidence 999998763 46889999999999999999999998888999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeC
Q 000475 1351 AEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1351 ~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1429 (1470)
||+|.+||||||||++||||++++|+|++||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++
T Consensus 735 Ge~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999977 5567777789999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1430 GKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1430 G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
|+++|.|+|++|++ +++.|++++++..
T Consensus 815 G~i~~~Gt~~eL~~-~~~~~~~l~~~~~ 841 (1495)
T PLN03232 815 GMIKEEGTFAELSK-SGSLFKKLMENAG 841 (1495)
T ss_pred CEEEEecCHHHHHh-cchhHHHHHHhcc
Confidence 99999999999997 4688999987654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=650.24 Aligned_cols=473 Identities=19% Similarity=0.219 Sum_probs=366.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
...+.+.-..+...+++++++.|..+++..++|+++|++++|++.++.... .+..++...+.+++.++++...-.+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777889999999999999999999999999999999998763 4555555555555544443321111111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1111 (1470)
Q Consensus 1032 ~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1111 (1470)
+.++++++.+.++ .++.+..+..++.....+....+.+.|.++|+++||+|++|+.|.++..+..+..
T Consensus 445 ~g~~v~~l~~~l~------------~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e 512 (1622)
T PLN03130 445 IGSLMLVLMFPIQ------------TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 512 (1622)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1111122222222 2223333444444455567778999999999999999999999999888776664
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 1112 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1191 (1470)
Q Consensus 1112 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi 1191 (1470)
.+..........+.......... .+.++.+.......+.++++.+..++++...+...+..+...+..+.+..+|.+|+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI 591 (1622)
T PLN03130 513 LSWFRKAQLLSAFNSFILNSIPV-LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRL 591 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333222222222221111111 11122222233346778888888777777777777788888899999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000475 1192 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1192 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl 1270 (1470)
.+|.+.+++.+. . .++ .-+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||++|||||||+++|+|+
T Consensus 592 ~~~L~~~e~~~~---~-~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~ 666 (1622)
T PLN03130 592 EELLLAEERVLL---P-NPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666 (1622)
T ss_pred HHHHcCcccccc---c-CCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 999976543211 0 111 11224579999999999753 35699999999999999999999999999999999999
Q ss_pred CCCCC-cEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000475 1271 VEPSG-GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349 (1470)
Q Consensus 1271 ~~p~~-G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~ 1349 (1470)
++|++ |+|.+ |.+|+||||+|.+|+|||||||..+.++++++++++++.|+|.+++..+|+|+||.
T Consensus 667 ~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~ 733 (1622)
T PLN03130 667 LPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTE 733 (1622)
T ss_pred hccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCccccc
Confidence 99999 89974 67899999999999999999999888899999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCEEEEEe
Q 000475 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1428 (1470)
Q Consensus 1350 v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~ 1428 (1470)
|||+|.||||||||||+||||++++|+|++||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|+
T Consensus 734 IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~ 813 (1622)
T PLN03130 734 IGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVH 813 (1622)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999876 677887778999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1429 EGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1429 ~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
+|+|+|.|+|++|++ +++.|++++++..
T Consensus 814 ~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~ 841 (1622)
T PLN03130 814 EGMIKEEGTYEELSN-NGPLFQKLMENAG 841 (1622)
T ss_pred CCEEEEeCCHHHHHh-cchhHHHHHHhcc
Confidence 999999999999997 4688999987654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=540.58 Aligned_cols=456 Identities=27% Similarity=0.419 Sum_probs=345.7
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g--- 659 (1470)
..++++|.+.++.... ......++ +|++++||.+|+||++|||||-..++++|+++. -+|++ ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 4577888777776441 24566788 999999999999999999999999999999975 34554 4544
Q ss_pred --------------EeEEEcCCCCC-CC--ccHHHHHh----cCCCCC----HHHHHHHHHHhcchHHHHhccCCCcccc
Q 000475 660 --------------KKAYVPQSSWI-QT--GTIRENIL----FGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1470)
Q Consensus 660 --------------~~ayv~Q~~~i-~~--~Ti~eNI~----~g~~~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~i 714 (1470)
+|++++|+|.- .| -||..-|. ..+... +++.-+.++..++.+- ...+
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl 151 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRL 151 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhh
Confidence 58999999863 22 37765554 323222 2222333333443221 1224
Q ss_pred cCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEE
Q 000475 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1470)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~ 791 (1470)
...+++|||||||||.||.||..+||++|-||||.|||..+..+|.+ +++.+. .|..+++||||+..+.. ||+|+|
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 46678999999999999999999999999999999999999999986 455443 37899999999999986 999999
Q ss_pred EeCCEEEEecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhh
Q 000475 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTE 871 (1470)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 871 (1470)
|.+|++++.|+.++++..+...+.+.+-+
T Consensus 231 M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------- 259 (534)
T COG4172 231 MQHGEIVETGTTETLFAAPQHPYTRKLLA--------------------------------------------------- 259 (534)
T ss_pred EeccEEeecCcHHHHhhCCCChHHHHHHh---------------------------------------------------
Confidence 99999999998777765221111111000
Q ss_pred cCcchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHH
Q 000475 872 LGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951 (1470)
Q Consensus 872 ~g~v~~~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 951 (1470)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000475 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1470)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1031 (1470)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 000475 1032 LFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1111 (1470)
Q Consensus 1032 ~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1111 (1470)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 1112 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1191 (1470)
Q Consensus 1112 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi 1191 (1470)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCCHHH
Q 000475 1192 LQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP---------TLPMVLKGITCTFPGEKKIGVVGRTGSGKST 1262 (1470)
Q Consensus 1192 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vLk~is~~i~~GekvgIVGrTGSGKST 1262 (1470)
.|+. ...+|..-...--++.+|+.+.|+- +.-.+.+||||+.++||.+||||+|||||||
T Consensus 260 -------aeP~----g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsT 328 (534)
T COG4172 260 -------AEPS----GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKST 328 (534)
T ss_pred -------cCCC----CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcch
Confidence 0100 0001100011223667777777632 1124889999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---HhcccEEEccCCC--CCc-ccHHHhcC-------cC--CCCCHHHHH
Q 000475 1263 LIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSRLSIIPQDPM--LFQ-GTVRTNLD-------PL--EQHSDQEIW 1327 (1470)
Q Consensus 1263 Ll~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~isiIpQdp~--LF~-gTIR~NLd-------p~--~~~sd~eI~ 1327 (1470)
|-.+|+|+.++. |+|.++|.||...+.++ +|+++-+|.|||+ |-. -||-+-+. |. ..-.|+.+.
T Consensus 329 lG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~ 407 (534)
T COG4172 329 LGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI 407 (534)
T ss_pred HHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHH
Confidence 999999999876 99999999999998776 7899999999996 211 14443332 11 112366789
Q ss_pred HHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CC
Q 000475 1328 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SR 1405 (1470)
Q Consensus 1328 ~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~ 1405 (1470)
+||+.+||+.-.... -...+|||||||++||||+.-+|++++||||||+||..-.++|.+.+++.. .+
T Consensus 408 ~aL~EVGLDp~~r~R----------YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~ 477 (534)
T COG4172 408 EALEEVGLDPATRNR----------YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG 477 (534)
T ss_pred HHHHHcCCChhHhhc----------CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC
Confidence 999999997654322 234699999999999999999999999999999999999999999998754 46
Q ss_pred cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000475 1406 CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1406 ~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~ 1451 (1470)
-+-++|+|++..++. ||+|+||.+|+|||.|+.+++++++...|.+
T Consensus 478 LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 478 LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred CeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 799999999999977 9999999999999999999999999887754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=608.80 Aligned_cols=200 Identities=21% Similarity=0.336 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EEccCC--CCCc-ccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccC
Q 000475 1299 IIPQDP--MLFQ-GTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1374 (1470)
Q Consensus 1299 iIpQdp--~LF~-gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1374 (1470)
|+||++ .+.. .|+.+++... ....++++.+.|+..++.+. -.+.++ ..||||||||++||||++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEET----RRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCch----hhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 3788876321 22345567778888876321 123344 46999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 000475 1375 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL-EYDSPRQLLE 1443 (1470)
Q Consensus 1375 ~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv-E~g~p~~Ll~ 1443 (1470)
|++|||||||++||+.+...+.+.|++. +.|||+|||++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999886 4599999999999976 9999999999998 6788888743
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=587.77 Aligned_cols=529 Identities=26% Similarity=0.364 Sum_probs=412.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1470)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~ 352 (1470)
++ .+....++.++..++....|.++..+++.+.. .. ... ..+...+++..++..++.....+....++.++...
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-DL-GEL---LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 78888888888899999999999999988761 11 111 11111122222233333333445555666888888
Q ss_pred HHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000475 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWL-LPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1470)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~~~w~-~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~ 428 (1470)
+...+|+|.++++.. ...+|++++.+++|++.+...+........ .++.+ ++.+.+...++|..+++.+++.+++
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999988732 227899999999999999998876533333 33333 3333344455545666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000475 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA-FLFWA 507 (1470)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~-~~~~~ 507 (1470)
......+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++..+..+...+...+.....+... .....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777667888888999999999999999999999999999998766666554333332222122222221 11111
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCC
Q 000475 508 -SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSK 585 (1470)
Q Consensus 508 -~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~-~~~~~~~~~~ 585 (1470)
.-....++.++.+.+..+.++.+.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++. .+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 12233344566666777889999999999999999999999999999999999999999999998652 211111 12
Q ss_pred CCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-----
Q 000475 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1470)
Q Consensus 586 ~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g----- 659 (1470)
..+..|+++|++|+|+++ .+.++| ||++++||++|||||+|||||||+++|+|.++|++|++ .++|
T Consensus 324 ~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg~dI~~ 395 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRD 395 (567)
T ss_pred CCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCEehhh
Confidence 233569999999999853 578999 99999999999999999999999999999999999997 7777
Q ss_pred --------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHH
Q 000475 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 --------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1470)
+++||||+|++|++||+|||.+|++ .++++..++++.+++++.++.+|+|.+|.+||+|.+||||||||++
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 3699999999999999999999988 5778888999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhc
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1470)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 810 (1470)
||||+++||+|++||||||+||+++++.+.+. +....++||+++|+|+++.+..||+|+||++|+|++.|+++|+++ .
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~-l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-K 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHH-HHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-c
Confidence 99999999999999999999999999888765 445557899999999999999999999999999999999999998 5
Q ss_pred hhHHHHHHHH
Q 000475 811 NSELVRQMKA 820 (1470)
Q Consensus 811 ~~~~~~~~~~ 820 (1470)
++.+.++...
T Consensus 554 ~g~y~~l~~~ 563 (567)
T COG1132 554 GGLYARLYQA 563 (567)
T ss_pred CCHHHHHHHH
Confidence 6677766654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=583.27 Aligned_cols=534 Identities=18% Similarity=0.267 Sum_probs=412.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1470)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~r 348 (1470)
.++.+++.+++..++.++..++..+.|++++.+++.+..... .. .+ ++.+++..++..+....+.+...++..+
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---VL-PT--LALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888899999999999999999997654321 11 11 1111122223333333344556788888
Q ss_pred HHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000475 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1470)
Q Consensus 349 ir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~ 424 (1470)
+|..+...+|+|.++++.. .+++|++++.++.|++.+.+++. .+..+....+.+++.+++++ .+.|..+++.+++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~li~l~~ 165 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAF-AMDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999988753 34899999999999999987664 33334444444444444443 2444555655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1470)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 504 (1470)
+++...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+.....+....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777888888888888888999999999999999999999999888887766433222211111111111111
Q ss_pred HH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCC
Q 000475 505 FW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPITE 581 (1470)
Q Consensus 505 ~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~-~~~~~ 581 (1470)
.. ..-..+.++.+|.+.+..+.++.+.+++++.++..+..|+..++..+..+.+++.+++|+.++++.++.. +....
T Consensus 246 ~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 325 (585)
T TIGR01192 246 NRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADA 325 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccC
Confidence 11 1112234456777888889999999999999999999999999999999999999999999999765421 11111
Q ss_pred CCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-
Q 000475 582 PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG- 659 (1470)
Q Consensus 582 ~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g- 659 (1470)
.+.......++++|++|+|+++ .+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 326 ~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~ 397 (585)
T TIGR01192 326 PELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGI 397 (585)
T ss_pred CCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EECCE
Confidence 1111123469999999999743 346889 99999999999999999999999999999999999986 7766
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++||+|+|+++++|++|||.++.+ .+++..+++++.+++++.+..+|+|.+|.+|++|.+||||||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 3699999999999999999999864 466777788888899999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhH
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 806 (1470)
||++||||++++|++++||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++++
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999888865 45555678999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHH
Q 000475 807 IADQNSELVRQMK 819 (1470)
Q Consensus 807 ~~~~~~~~~~~~~ 819 (1470)
.+ ++..+.++..
T Consensus 557 ~~-~~~~y~~l~~ 568 (585)
T TIGR01192 557 IQ-KDGRFYKLLR 568 (585)
T ss_pred HH-CCChHHHHHH
Confidence 87 5556665554
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=582.50 Aligned_cols=506 Identities=21% Similarity=0.252 Sum_probs=389.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1470)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~ 352 (1470)
|+.++...++.++..++..+.|+++..+++.+. +... ... -+.+++.+++..++..++.....+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888899999999999999999773 3221 111 222333344444445555555556677888888888
Q ss_pred HHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000475 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1470)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~ 428 (1470)
+...+|+|.++++.. ..++|+++|.+++|++++.+++. .+..+....+.+++++++++. ++|+.+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 999999999987543 34899999999999999998765 355555555555544444432 3334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1470)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (1470)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++.-++..+...+..........+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777778888889999999999999999999999999999988887664333222222222122211111111
Q ss_pred HHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000475 509 PTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1470)
Q Consensus 509 p~~--v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 586 (1470)
..+ +.++.++.+.+..+.++.+.+++++.+...+..|+..+...+..+.+++++++|+.++++.+++.......+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 111 112234445555778999999999999999999999999999999999999999999997543211111111 11
Q ss_pred CCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-----
Q 000475 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1470)
Q Consensus 587 ~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~----- 660 (1470)
....|+++|++|+|+++ ..+.+++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++|.
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 22469999999999854 2468999 99999999999999999999999999999999999986 77763
Q ss_pred --------eEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHH
Q 000475 661 --------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1470)
Q Consensus 661 --------~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1470)
++||+|+|++|++||+|||.+|.+ .++++.+++++.++++++++.+|+|.+|.+||+|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 799999999999999999999865 57788999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000475 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1470)
Q Consensus 732 ARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 792 (1470)
|||++++|++++||||||+||+++++.+++. +....+++|+|+|||+++.+..||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999998765 55556789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=539.68 Aligned_cols=523 Identities=22% Similarity=0.307 Sum_probs=407.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1470)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy 358 (1470)
+.+++..+..++...+-.++-.+++-+-..+. ...-+.++++++++.++.+++.-.-....++.+.++|..+...++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677777666654433321 111233444555555555555444445677889999999999999
Q ss_pred HHhcccccC---CCCHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000475 359 KRSMAIKFA---GPSSGIIINMINVDVERIGDFFL----YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1470)
Q Consensus 359 ~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~----~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~ 431 (1470)
+|..++... ..++|++.++++.-++.+..++. .+...-..|+-+.++++...+ .++++-++++.+..++
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w----~aalIllit~PlIPlf 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNW----AAALILLITAPLIPLF 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHH
Confidence 999988753 23899999999999999887653 333445567666666665554 4455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSAIAFLFWA 507 (1470)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (1470)
.+.+++..++..++.++.-..--...-+-|+|+.++|.|+-.+...++| ++.|+.-++.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777778889999999999999887766666 466888888887665554444444333
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCC-CCC
Q 000475 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPITE-PTS 584 (1470)
Q Consensus 508 ~p~~v~~~~f~~~~~~~-~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~-~~~~~-~~~ 584 (1470)
+- .+ ++.+...-+.+ ++++-...+.++.+-.-.-.|++.+...+..-.++..+.+++..|++.++.. +.... ...
T Consensus 237 si-Al-vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SI-AL-VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HH-HH-HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 32 22 23334444556 6999999999999988899999999999999999999999999999988732 21111 111
Q ss_pred CCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----
Q 000475 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1470)
Q Consensus 585 ~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---- 659 (1470)
......+..+|.+|.|++. ++.+++ |+++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 1123345556999999865 378899 99999999999999999999999999999999999996 8886
Q ss_pred ---------EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 ---------~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
+++||+|+|.++.+||||||+++++ .+++...++++..++.+.++. |+|.+|.+||+|.+|||||+|||
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 3799999999999999999999998 567888999999999999988 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhh
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 809 (1470)
+||||+++++++||||||||+||++++..+.+ .+..+.++|||++|||+++.+..+|+|++|++|+++++|+++++.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~-~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQ-ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHH-HHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 99999999999999999999999999777754 5667778899999999999999999999999999999999999988
Q ss_pred chhHHHHHHHHh
Q 000475 810 QNSELVRQMKAH 821 (1470)
Q Consensus 810 ~~~~~~~~~~~~ 821 (1470)
++..+.+++..+
T Consensus 544 ~~~~y~~l~~~q 555 (559)
T COG4988 544 KQGLYANLLKQQ 555 (559)
T ss_pred cCcHHHHHHHHH
Confidence 566676666543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-59 Score=595.67 Aligned_cols=200 Identities=24% Similarity=0.369 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEccCC-CCCcc-cHHHhcCcC-CCC--C--HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1299 IIPQDP-MLFQG-TVRTNLDPL-EQH--S--DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1299 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
|+||++ .++.. |+++|+... ... . +.++.+.|+..++.+ +..+.++ ..||||||||++|||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46655 999999642 111 2 445666677766532 1124444 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe-CCEEEEe-cChhHHhh
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD-EGKVLEY-DSPRQLLE 1443 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~-~G~vvE~-g~p~~Ll~ 1443 (1470)
+++|++|||||||++||..+...+.+.|++. ++|||+|||+.+.+.. ||+|++|+ +|++.++ |++++.++
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999999875 5699999999999865 99999998 8999886 56666543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=585.10 Aligned_cols=199 Identities=22% Similarity=0.294 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999543 3599999999999999999999999999999999999999999999875 3579
Q ss_pred EEEccCCCCCcccHHHhcC-----cCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHc
Q 000475 1298 SIIPQDPMLFQGTVRTNLD-----PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372 (1470)
Q Consensus 1298 siIpQdp~LF~gTIR~NLd-----p~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1372 (1470)
+|+||++. ...++.+|.. .+...+++++.++|+..++.+.. .+.+ ...||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~------~~~~----~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQP----MYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH------hcCC----ccccCHHHHHHHHHHHHHh
Confidence 99999973 2224444421 12234677888899998885321 1222 3579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEE-EecChhHH
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVL-EYDSPRQL 1441 (1470)
Q Consensus 1373 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv-E~g~p~~L 1441 (1470)
++|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++.+.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999998864 3 599999999999976 9999999999998 45776654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=556.68 Aligned_cols=484 Identities=23% Similarity=0.338 Sum_probs=344.1
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--EeEEEcC
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--~~ayv~Q 666 (1470)
.|.++|++++|.. .+.+++ |+++.+|+++||||+|||||||||++|.|++.|++|++ ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4788999999953 467888 99999999999999999999999999999999999997 5554 7999999
Q ss_pred CCCCCC-ccHHHHHhcCCCCCH---HHHHHHHH---------------------HhcchHHHHhccCC--CcccccCCCC
Q 000475 667 SSWIQT-GTIRENILFGKDMRQ---SFYEEVLE---------------------GCALNQDIEMWADG--DLSVVGERGI 719 (1470)
Q Consensus 667 ~~~i~~-~Ti~eNI~~g~~~~~---~~y~~v~~---------------------~~~l~~d~~~l~~g--~~t~ig~~g~ 719 (1470)
++.... .||.+.+..|...-. ..|+++.. ...++.+++..-.| .... .....
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~ 152 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS 152 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh
Confidence 988865 599999998753211 11111111 11122223222222 1111 45668
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+||||||.||+|||||..+||++||||||++||..+..++ ++.+... +| |+|+||||.+||+. |++|+.++.|++.
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 9999999999999999999999999999999999987666 4455543 45 99999999999997 9999999999874
Q ss_pred -EecChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchH
Q 000475 799 -QSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKW 877 (1470)
Q Consensus 799 -~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 877 (1470)
+.|+|+.+.+.+.....+.....+.. ++ +.+
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~------------------------~~------------------~~~------ 261 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQ------------------------QK------------------ELA------ 261 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHH------------------------HH------------------HHH------
Confidence 78999998873322221111000000 00 000
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000475 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIK 957 (1470)
Q Consensus 878 ~~y~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~ 957 (1470)
.-..++.
T Consensus 262 -~~~~~i~------------------------------------------------------------------------ 268 (530)
T COG0488 262 -KEQEWIR------------------------------------------------------------------------ 268 (530)
T ss_pred -HHHHHHH------------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000475 958 TAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVIL 1037 (1470)
Q Consensus 958 ~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~ 1037 (1470)
|+
T Consensus 269 -------------------------------r~----------------------------------------------- 270 (530)
T COG0488 269 -------------------------------RG----------------------------------------------- 270 (530)
T ss_pred -------------------------------HH-----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 000475 1038 GISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1117 (1470)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1117 (1470)
..+..++++
T Consensus 271 -------------------~~~~~~~k~---------------------------------------------------- 279 (530)
T COG0488 271 -------------------KAAASKAKK---------------------------------------------------- 279 (530)
T ss_pred -------------------HhccchHHH----------------------------------------------------
Confidence 000000000
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--h
Q 000475 1118 NCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF--T 1195 (1470)
Q Consensus 1118 ~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~--~ 1195 (1470)
.++.+...+|+.+- .
T Consensus 280 ---------------------------------------------------------------a~sr~k~l~k~~~~~~~ 296 (530)
T COG0488 280 ---------------------------------------------------------------AKSRIKRLEKLEARLAE 296 (530)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhhhhh
Confidence 00011111222211 0
Q ss_pred cCCCCCccccC-CCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Q 000475 1196 NIPSEAPLVIK-NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274 (1470)
Q Consensus 1196 ~~~~E~~~~~~-~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~ 1274 (1470)
..|.+...... .-.+++.-+.+-.++++|+++.|.++ .++++++||.|++|+|||||||||+|||||++.|.|...|.
T Consensus 297 ~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 297 ERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred cccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 01111000000 00111111123358999999999765 56999999999999999999999999999999999999999
Q ss_pred CcEEEEcCEeCCCCCHHHHhcccEEEccCC-CCCc-ccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCcccc
Q 000475 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQ-GTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1351 (1470)
Q Consensus 1275 ~G~I~IDG~dI~~i~l~~LR~~isiIpQdp-~LF~-gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~ 1351 (1470)
+|+|.+.-. -++||.+|+- .++. .|+-+++.... +..+.++...|.+.++... ...++|+
T Consensus 376 ~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v~ 438 (530)
T COG0488 376 SGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPVG 438 (530)
T ss_pred CceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCchh
Confidence 999988631 2699999997 4443 38888887544 4448889999999987543 2345554
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCC
Q 000475 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEG 1430 (1470)
Q Consensus 1352 e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G 1430 (1470)
.||||||-|+.||+.++.+|.+|||||||++||.+|...+.++|.++ +.|||+|||+...+.. |++|+++++
T Consensus 439 ----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~- 511 (530)
T COG0488 439 ----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED- 511 (530)
T ss_pred ----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-
Confidence 59999999999999999999999999999999999999999999875 4599999999999977 999999999
Q ss_pred EEEEe-cChhHHhhc
Q 000475 1431 KVLEY-DSPRQLLED 1444 (1470)
Q Consensus 1431 ~vvE~-g~p~~Ll~~ 1444 (1470)
++.++ |.+++..+.
T Consensus 512 ~~~~~~g~y~~y~~~ 526 (530)
T COG0488 512 KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ceeEcCCCHHHHHHh
Confidence 88888 888877654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=606.96 Aligned_cols=211 Identities=22% Similarity=0.278 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCC-----------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEcCEeC
Q 000475 1219 KIELENLLVQYNP-----------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDI 1285 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~-----------~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI 1285 (1470)
.+.++||++..+. +...+|+|||++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999988742 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhcccEEEccCCCCCcc-cHHHhcCcC------CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000475 1286 SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPL------EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354 (1470)
Q Consensus 1286 ~~i~l~~LR~~isiIpQdp~LF~g-TIR~NLdp~------~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1354 (1470)
. ....|+.++|+||++.++.. |+||||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24577889999999987765 999999531 122333 36678888887653 367776544
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCEEEEEeC-
Q 000475 1355 -ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDE- 1429 (1470)
Q Consensus 1355 -~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t-i-~~~DrIlvL~~- 1429 (1470)
..||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999864 47999999999984 4 55999999996
Q ss_pred CEEEEecChh
Q 000475 1430 GKVLEYDSPR 1439 (1470)
Q Consensus 1430 G~vvE~g~p~ 1439 (1470)
|+++++|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=513.02 Aligned_cols=515 Identities=22% Similarity=0.297 Sum_probs=397.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000475 289 IASYIGPFLITNFVSFLSGKHDHSS--YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF 366 (1470)
Q Consensus 289 ~~~~~~P~ll~~~i~~~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~~~iy~K~L~ls~ 366 (1470)
......|++++..++-++.-+. .+ .......+.+++++.+..+.+.-.-.+....+..++--.....+|+..+.++.
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~-~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADG-NPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred HhheehHHHHHHHHhhhhhccc-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4455569999999998863222 12 11122344455555555555443334444455555555566667777777665
Q ss_pred CC---CCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 367 AG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERF 442 (1470)
Q Consensus 367 ~~---~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~~~~~~~ 442 (1470)
.. +.+|++.+.|..-...|.+++.. +..+....+++.++...+|...|+..+++.++.+.....++.....+-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 43 48999999999999999888753 455666778888888899999995556666666666667777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000475 443 HSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAFLFWA--SPTLVSVITFGV 519 (1470)
Q Consensus 443 ~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~~~~~~~~~~--~p~~v~~~~f~~ 519 (1470)
+++++++.|+-.+..-|.|.|-.+||.|+-|+.-.++.... ++.|...++....+. +..+..-. +...+.++..+.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~-~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLA-FLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988887655 566655444333322 22222111 111122222333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEE
Q 000475 520 CILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYA 599 (1470)
Q Consensus 520 ~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~i~~~~~~f~ 599 (1470)
.-+..+.+|.+...-.-+++..|..|+..|...+..+.|+..-..-....+..+++... ...+....+..|+++|++|+
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~-~~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE-AALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh-ccCCcccCCCcEEEEeeEEE
Confidence 33456789999999999999999999999999999998888766655444433332111 01222233456999999999
Q ss_pred eCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-------------eEEEc
Q 000475 600 WDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVP 665 (1470)
Q Consensus 600 w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------------~ayv~ 665 (1470)
|.++ .+.|++ ||+|++||++||+|+|||||||++++|++.++ .+|++ .++|. +||||
T Consensus 361 y~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 361 YGPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred eCCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeEeC
Confidence 9854 568999 99999999999999999999999999999999 99996 88884 69999
Q ss_pred CCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEE
Q 000475 666 QSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1470)
Q Consensus 666 Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lL 744 (1470)
|+..|||.||.+||.+|.+. ..++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+.+||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999875 34444556666789999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhchhHHHHH
Q 000475 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1470)
Q Consensus 745 Dep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1470)
|||||+||.+|++.+++. +++...+||+|+|-|+++.++.||+|+++++|++.+.|+++|++. +++.+.++
T Consensus 512 DEaTS~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~ 582 (591)
T KOG0057|consen 512 DEATSALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADL 582 (591)
T ss_pred cCcccccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence 999999999999999975 555778999999999999999999999999999999999999998 66555544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=601.76 Aligned_cols=467 Identities=17% Similarity=0.199 Sum_probs=356.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000475 343 NRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPA 418 (1470)
Q Consensus 343 ~r~g~rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~ 418 (1470)
...+.+.-..+...+|++.++.+. ....+|+|+|+++.|++.+.+.+. .+..+...++.++.++++++. ..++.+
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~-~~~~~~ 1108 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL-ATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344555555566666666666543 234899999999999999998765 344555666666666555543 232433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1470)
Q Consensus 419 l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1470)
++.+.++++...+...+.+..+..++.....+....+..+|.++|+++||.|+||+.|.++..+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444555555555566566667777899999999999999999999998887766554433322211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000475 499 SAIAFLFWASPTLVSVITFGVCIL-LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1470)
Q Consensus 499 ~~~~~~~~~~p~~v~~~~f~~~~~-~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 577 (1470)
............++ ++..+.+.+ ..+.+++|.+..++.+...+..|+..+......+.++.+|.+|+.+|++.+++.+
T Consensus 1189 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1189 RWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 11111111111111 112222333 3467999999999999999999999999999999999999999999997654221
Q ss_pred -CC-CCCCCC--CCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCC
Q 000475 578 -PI-TEPTSK--ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1470)
Q Consensus 578 -~~-~~~~~~--~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 652 (1470)
.. ...+.. ..+..|+++|++|+|+++ ..+.|+| ||+|++||++||||++|||||||+++|+|.++|++|
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G 1341 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYRED------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG 1341 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC
Confidence 00 111111 234579999999999864 2468999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 653 ~~i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
++ .++| +++||||+|.+|+|||||||....+++++...++++.|++.+.++.+|+|.+|.+||+|.
T Consensus 1342 ~I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1420 (1522)
T TIGR00957 1342 EI-IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 (1522)
T ss_pred eE-EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC
Confidence 96 8887 369999999999999999998333678888899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 799 (1470)
+||||||||++||||++++|+|+|||||||+||+++.+.+. +.++...+++|+|+|+|+++.+..||+|+||++|+|++
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ-STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999977665 55676778999999999999999999999999999999
Q ss_pred ecChhhHHhhchhHHHHHHHH
Q 000475 800 SGKYEDLIADQNSELVRQMKA 820 (1470)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~~~ 820 (1470)
.|+++|+++ .+..|.++..+
T Consensus 1500 ~G~~~eLl~-~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1500 FGAPSNLLQ-QRGIFYSMAKD 1519 (1522)
T ss_pred ECCHHHHHh-CCCHHHHHHHH
Confidence 999999998 45667766543
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-55 Score=508.26 Aligned_cols=463 Identities=21% Similarity=0.317 Sum_probs=354.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHH
Q 000475 344 RIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGA-APAF 419 (1470)
Q Consensus 344 r~g~rir~~L~~~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~-~~~l 419 (1470)
....|+-+.+.-.+|+|....+.... .+|++.|++..|++.+++.+..+..+|...+-++.++.+....+++ .+.+
T Consensus 84 ~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~All 163 (573)
T COG4987 84 DATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL 163 (573)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44568889999999999988776543 8999999999999999999999988887776665555544333332 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1470)
Q Consensus 420 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1470)
.++..++..+++...+.+..++..++..+.+..--....|.+.|+..++++|-++.|.+.+++.-..-.+.-+|......
T Consensus 164 l~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~ 243 (573)
T COG4987 164 LGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777788888888888888888878889999999999999999999988876542221121122222222
Q ss_pred HHHHHH-HHHHHHHHHHH-HHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000475 500 AIAFLF-WASPTLVSVIT-FGVCILLKTPLT-SGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1470)
Q Consensus 500 ~~~~~~-~~~p~~v~~~~-f~~~~~~~~~L~-~~~vft~l~~~~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 575 (1470)
...++. .....++.... ...+..-.+..+ +..+...++.|..+ ++.. ..|.++..+.|+..|..|+.+.+.++++
T Consensus 244 ~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e 322 (573)
T COG4987 244 LSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKPE 322 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCcc
Confidence 222221 11222222111 112212223333 22222222223222 2332 2337778899999999999999987763
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcE
Q 000475 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~ 654 (1470)
....... ....+..++++|++|+|+++ +.+.|+| ||++++||++||+|++|||||||++.|.|-++|++|++
T Consensus 323 ~~~~~~~-~~~~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i 395 (573)
T COG4987 323 VTFPDEQ-TATTGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395 (573)
T ss_pred cCCCccc-cCCccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence 2211111 11122379999999999975 4578999 99999999999999999999999999999999999997
Q ss_pred EEECC-------------EeEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 655 i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
..+| .+++++|.+.+|++|+|||+.+++|. +++...++++..+|++-++..|+|.+|.+||.|..
T Consensus 396 -~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~ 474 (573)
T COG4987 396 -TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRR 474 (573)
T ss_pred -eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCc
Confidence 7777 35899999999999999999999875 56778889999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1470)
||||||||++|||++.+|++++||||||.+||+.|++++.+. +....++||+|+|||++..++.||+|++|++|+++++
T Consensus 475 LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred CCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 999999999999999999999999999999999999999875 4455689999999999999999999999999999999
Q ss_pred cChhhHHhhchhHHHHH
Q 000475 801 GKYEDLIADQNSELVRQ 817 (1470)
Q Consensus 801 g~~~~l~~~~~~~~~~~ 817 (1470)
|+|+++++ ++..+.++
T Consensus 554 G~~~~Ll~-~~g~~~~l 569 (573)
T COG4987 554 GTHAELLA-NNGRYKRL 569 (573)
T ss_pred CCHHhhhc-cccHHHHH
Confidence 99999998 55555544
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=511.33 Aligned_cols=486 Identities=19% Similarity=0.206 Sum_probs=347.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHH
Q 000475 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1470)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~ 1016 (1470)
.+...++..+|+..+..++.+.-.++....+...+++|..--...+..+.+ +|++.+..++...-...++..--.-
T Consensus 73 y~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P 148 (580)
T COG4618 73 YAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMP 148 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHH
Confidence 345567778899999999999999999999999988776544333333333 3555555544321111111111112
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhch
Q 000475 1017 SIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQ 1096 (1470)
Q Consensus 1017 ~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~ 1096 (1470)
.-+++++...|++.++.+...++.+.+..... +. .|+--+..++....-.++..-+..+.++|+|.|+
T Consensus 149 ~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~--------~~----t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM 216 (580)
T COG4618 149 LYLAVIFLFHPWLGLIALAGAIILVVLALLNE--------RA----TRKPLKEASEASIRANQLADATLRNAEVIEAMGM 216 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH----hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcc
Confidence 22334444555554444333222221110000 11 1222222233344455677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000475 1097 ENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF-LVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVI 1175 (1470)
Q Consensus 1097 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i 1175 (1470)
.....+++.+....+....-...-.+.-++...-.+=..+-. +..+.......+.+++|..-..-...-..-..+-..+
T Consensus 217 ~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI 296 (580)
T COG4618 217 LGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAI 296 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHH
Confidence 877776666555444333222222111111111111111111 1112233345666777654221111111122344567
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECC
Q 000475 1176 WNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1255 (1470)
Q Consensus 1176 ~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGr 1255 (1470)
..|-+.-....|..|+++..+..++.....+ -|. .+|.+.++++++.=++...++|+|+||+++|||-+|||||
T Consensus 297 ~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP~----P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 297 ANWKQFVAARQSYKRLNELLAELPAAAERMP--LPA----PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCCC--CCC----CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECC
Confidence 7888888899999999999875443321111 111 2689999999986555556899999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcC
Q 000475 1256 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCH 1334 (1470)
Q Consensus 1256 TGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~ 1334 (1470)
||||||||.++|.|...|.+|.|.+||-|+.+.+.+++-++|||.|||-.||+|||++||.-|+ +.+++.|.+|.+.++
T Consensus 371 SgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAg 450 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450 (580)
T ss_pred CCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998876 778888999999999
Q ss_pred cHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEec
Q 000475 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAH 1413 (1470)
Q Consensus 1335 L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAH 1413 (1470)
.+|.|.++|+||||.|||+|..||||||||++||||+..+|+++|||||-||||.+-|+.+.++|.+. .+++|+|+|||
T Consensus 451 vHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaH 530 (580)
T COG4618 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530 (580)
T ss_pred hHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999988765 47899999999
Q ss_pred ChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1414 RIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1414 Rl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|++.+..+|+|+||++|++..||+-+|.+++
T Consensus 531 RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 531 RPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-57 Score=564.98 Aligned_cols=191 Identities=25% Similarity=0.336 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.++++|++++|+. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEccCCCC-CcccHHHhcCcC-CCC-CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1299 IIPQDPML-FQGTVRTNLDPL-EQH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1299 iIpQdp~L-F~gTIR~NLdp~-~~~-sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
|+||++.+ ++.|+++|+... ..+ .+..+.++++..++.+.. |.++ ..||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~----~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-------DKNV----KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-------hCCc----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 466999999642 122 234567788888886543 3344 469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~ 1437 (1470)
+||+|||||++||.++...+.+.|++.. .++|||+|+|+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999864 37899999999999876 999999965 8777766
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=581.57 Aligned_cols=460 Identities=17% Similarity=0.190 Sum_probs=348.6
Q ss_pred HHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000475 352 ALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1470)
Q Consensus 352 ~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i 427 (1470)
.+...+|++.++.+. .....|+|+|.+++|++.+.+.+. .+..+....+.++.++++++.. .++..++.+.++++
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~-~p~~~~~~i~~~~~ 1110 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS-QPFVLVALVPCGYL 1110 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 445666677666543 234899999999999999998765 3445555555565555554433 32333322222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000475 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL-FW 506 (1470)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~-~~ 506 (1470)
...+...+.+..+..++.....++.-....+|.++|+++||.|++|+.|.++..+.-+...+...+........... ..
T Consensus 1111 ~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~ 1190 (1560)
T PTZ00243 1111 YYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666667777778899999999999999999999988887655333332211111111111111 11
Q ss_pred H-HHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CC--
Q 000475 507 A-SPTLVSVITFGVCI--LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK--PI-- 579 (1470)
Q Consensus 507 ~-~p~~v~~~~f~~~~--~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~--~~-- 579 (1470)
. ....+.++.++++. ...+.++++.+..++.+...+..|+..+...+..+.++++|++||.+|++..++++ ..
T Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 1 11111222222222 22345788988888888888999999999999999999999999999996432110 00
Q ss_pred ---------------------CC--C----CCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcC
Q 000475 580 ---------------------TE--P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGS 631 (1470)
Q Consensus 580 ---------------------~~--~----~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~ 631 (1470)
+. . +.......|+++|++|+|+++ ..+.|+| ||+|++||++||||+
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEECC
Confidence 00 0 001123469999999999754 3468999 999999999999999
Q ss_pred CCCChHHHHHHHhCCCcCCCCcEEEECCE-------------eEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhc
Q 000475 632 VGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1470)
Q Consensus 632 ~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------------~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~ 698 (1470)
+|||||||+++|+|.++|++|++ .++|. ++||||+|.+|+|||||||..+.+++++...++++.|+
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 99999999999999999999996 88873 69999999999999999999877888899999999999
Q ss_pred chHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccC-CCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEc
Q 000475 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777 (1470)
Q Consensus 699 l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvt 777 (1470)
+++.++.+|+|.+|.+||+|.|||||||||++|||||+++ |+|+|||||||+||+++.+.+. +.++...+++|+|+|+
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IA 1502 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIA 1502 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999995 8999999999999999988775 4566677899999999
Q ss_pred CCcchhhhcCEEEEEeCCEEEEecChhhHHhhchhHHHHHHHH
Q 000475 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1470)
Q Consensus 778 H~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1470)
|+++.+..||+|++|++|+|++.|+++|++++++..|.+++..
T Consensus 1503 HRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred ccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999997556677777654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=551.48 Aligned_cols=509 Identities=14% Similarity=0.082 Sum_probs=386.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhccccccccc---cchhhhHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 892 LVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR---EQLIGVFIFL----SGGSSFFILGRAVLLATIAIKTAQRLFL 964 (1470)
Q Consensus 892 ~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~---~~~l~vy~~l----~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 964 (1470)
.+.+.+++.++...+.+..++++....+.-...+. ..++..++++ +++..+..++...+......+..+.+|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677777778887765542111111 1112223332 3333344444555555666677777777
Q ss_pred HHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 000475 965 NMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWY 1043 (1470)
Q Consensus 965 ~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~-~~~~~~~~~ip~~~~~~~~ 1043 (1470)
+.+++....++.|||. ++|++++|+++|++.+...+...+..++..++.+++.++.+.. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 7777777788889997 8899999999999999999999999999999998888777775 8887766555544444433
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000475 1044 QVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1123 (1470)
Q Consensus 1044 ~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1123 (1470)
. +++.+..+++.+......+.+.+.+.|.++|+.+||+|+.++.+.+++.+..++..+..........
T Consensus 256 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~ 323 (659)
T TIGR00954 256 L------------TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRF 323 (659)
T ss_pred H------------HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5556666667777777778889999999999999999999999999999988888888877777777
Q ss_pred HHHHHHHHHHHHHHH-HH--HH-HHHhhcC----CCcCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 1124 WLCLRINLLFNFAFF-LV--LI-ILVTLPR----SAIDPSL-AGLAATY---GLNLNVLQAWVIWNLCNVENKMISVERI 1191 (1470)
Q Consensus 1124 wl~~~l~~l~~~~~~-~~--~~-~~~~~~~----~~~~~~~-~gl~l~y---~l~l~~~~~~~i~~~~~le~~~~sveRi 1191 (1470)
++....+++...+.. +. .. ..+.... +.++.|. ++...+| ...+...+..+.....++.....+.+|+
T Consensus 324 ~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri 403 (659)
T TIGR00954 324 SYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARV 403 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666542211 11 11 1122211 4556554 3434444 4455677778888999999999999999
Q ss_pred HHHhcCCCCCc-------cccC--CC-----CCC------CCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEE
Q 000475 1192 LQFTNIPSEAP-------LVIK--NS-----RPS------PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIG 1251 (1470)
Q Consensus 1192 ~~~~~~~~E~~-------~~~~--~~-----~~~------~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~Gekvg 1251 (1470)
.++.+.++|.. ...+ +. +++ ..-...+.|+++||+++|+++ +++|+|+||+|++||++|
T Consensus 404 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~ 482 (659)
T TIGR00954 404 DTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLL 482 (659)
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEE
Confidence 99986533211 0000 00 000 000134679999999999644 369999999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC--------CCCCH
Q 000475 1252 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--------EQHSD 1323 (1470)
Q Consensus 1252 IVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~--------~~~sd 1323 (1470)
|+|+||||||||+++|.|+++|++|+|.+|+ |++++++||+|.+|++|+|+|+... .+.++
T Consensus 483 IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~ 551 (659)
T TIGR00954 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSD 551 (659)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCH
Confidence 9999999999999999999999999999874 6789999999999999999999642 24678
Q ss_pred HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 000475 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403 (1470)
Q Consensus 1324 ~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~ 1403 (1470)
++++++++.+++.+++.. |.|+|+..+ .+.+||||||||++||||++++|++|+||||||+||+++++.+++.+++.
T Consensus 552 ~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~- 628 (659)
T TIGR00954 552 KDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF- 628 (659)
T ss_pred HHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-
Confidence 899999999999999877 999999876 56799999999999999999999999999999999999999999999874
Q ss_pred CCcEEEEEecChhhhhhcCEEEEEeC
Q 000475 1404 SRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1404 ~~~TVI~IAHRl~ti~~~DrIlvL~~ 1429 (1470)
++|+|+||||++++..||+|++|+.
T Consensus 629 -~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 629 -GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred -CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 8999999999999999999999973
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=531.56 Aligned_cols=508 Identities=15% Similarity=0.148 Sum_probs=368.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 269 IIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1470)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 347 (1470)
+++ .+|+.+++..++.++..++....|.+++.+++...... ... .+.+++ +++.. .++.....+...+.+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~---~~~-~~~~~~-~~~~~---~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG---QGS-LFSFGG-LCLLA---LLFRIGADIFPAYAGM 82 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---chH-HHHHHH-HHHHH---HHHHHHHHHHHHHHHH
Confidence 456 67788888888999999999999999988875321100 011 111222 22222 2222233344567788
Q ss_pred HHHHHHHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000475 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1470)
Q Consensus 348 rir~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~ 424 (1470)
++...+...+|+|.++++.. ..++|++++.+++|++.+.+++..+..+....+.+++++++++. +.|..+++.++.
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~li~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAY-LSVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 88888999999999987653 34899999999999999999876555555555555544444443 333555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1470)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~--~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1470)
+++.+.+..+..++.++...+..+..++..+.+.|.++|++++|.++.++ ...+++.+..++-.+...+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666777777888888899999999999999999999854 3334443332211111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CC
Q 000475 503 FLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ--KK 577 (1470)
Q Consensus 503 ~~~~~~p~~v~~~~f~~~~~---~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~--~~ 577 (1470)
......+ .+.++.+++ ..+.++.+.+++++.+...+..|+..+...+..+.++++|++||.++++.++. ..
T Consensus 242 ~~~~~~~----~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~ 317 (555)
T TIGR01194 242 NFGQLLF----FLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPE 317 (555)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 1111111 111111111 12579999999999999999999999999999999999999999999863221 10
Q ss_pred --CCCCC-----CCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC
Q 000475 578 --PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 578 --~~~~~-----~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~ 649 (1470)
..... +.......|+++|++|+|++.+. ...+.+++ ||++++|++++|+||||||||||+++|+|+++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 318 LELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 00000 11112346999999999975310 12367999 999999999999999999999999999999999
Q ss_pred CCCcEEEECCE-------------eEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccC
Q 000475 650 ISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1470)
Q Consensus 650 ~~G~~i~~~g~-------------~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~ 716 (1470)
++|++ .++|. ++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|.
T Consensus 395 ~~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 395 QEGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CCcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99996 77763 5999999999999999995 33456677788999999999999999999883
Q ss_pred CCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000475 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1470)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G 795 (1470)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+++.. .+++|+|+|||+++.+..||+|++|++|
T Consensus 469 --~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 469 --TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999887665443 3689999999999999899999999999
Q ss_pred EEEEe
Q 000475 796 KIEQS 800 (1470)
Q Consensus 796 ~i~~~ 800 (1470)
++++.
T Consensus 547 ~i~~~ 551 (555)
T TIGR01194 547 CIVKD 551 (555)
T ss_pred EEEEe
Confidence 99864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=549.03 Aligned_cols=476 Identities=20% Similarity=0.238 Sum_probs=363.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000475 951 LATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVF 1030 (1470)
Q Consensus 951 ~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~ 1030 (1470)
....|.+.-..+-..++++.++..-.--..++.|+|+|-++.|.+.+++..++ +..+..+.++++..+.++...--+-+
T Consensus 266 ~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa 344 (1381)
T KOG0054|consen 266 SFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSA 344 (1381)
T ss_pred HHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 34556666666666677777777776667788999999999999999986554 45555566666555554433211112
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHH
Q 000475 1031 PLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1110 (1470)
Q Consensus 1031 ~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~ 1110 (1470)
++.+.++++++-++ .+..+..+..++.....+.......+|.++|+++||.|+||+.|.++..+.-++
T Consensus 345 ~~G~~~~il~~p~n------------~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~ 412 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLN------------SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQK 412 (1381)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHH
Confidence 22222333333333 333444455555566667777888999999999999999999999887766554
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000475 1111 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1189 (1470)
Q Consensus 1111 ~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sve 1189 (1470)
-.+.................. ...++.++.+.... ...+..+|..+-.++++.-.+...+.++......+-+..+|++
T Consensus 413 El~~lrk~~~~~~~~~~~~~~-~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~ 491 (1381)
T KOG0054|consen 413 ELKLLRKSAYLSALNSFLNFF-SPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLK 491 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222222222222111 22222222222222 3345567767777777776677777777777778888899999
Q ss_pred HHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh
Q 000475 1190 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF 1268 (1470)
Q Consensus 1190 Ri~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~ 1268 (1470)
|+.+|...++-.+...+. .+.-+.+-.|+++|.+++++++ .++.|+||||+|++|+.+||||++|||||||+++|+
T Consensus 492 Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiL 568 (1381)
T KOG0054|consen 492 RLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAIL 568 (1381)
T ss_pred HHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999765543322211 1112334569999999999764 345999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCc
Q 000475 1269 RVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1348 (1470)
Q Consensus 1269 rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt 1348 (1470)
|.++..+|++.++|. ++|+||.|.+|+|||||||-...+++++.-.++++.|+|.+.++.+|.|-.|
T Consensus 569 GEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~T 635 (1381)
T KOG0054|consen 569 GEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLT 635 (1381)
T ss_pred cCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcc
Confidence 999999999999994 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCEEEEE
Q 000475 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI-QQTIREETSRCTVITVAHRIPTVIDNDLVLVL 1427 (1470)
Q Consensus 1349 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~I-q~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL 1427 (1470)
.|||+|.|||||||||++||||++++++|.+||.|-|+||.++-+.| ++.|+...+++|+|.|||.++.+.+||+|+||
T Consensus 636 eIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl 715 (1381)
T KOG0054|consen 636 EIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVL 715 (1381)
T ss_pred eecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEe
Confidence 99999999999999999999999999999999999999999997765 67888888999999999999999999999999
Q ss_pred eCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1428 DEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1428 ~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
++|+|+|.|+++||++ .++.|.+|..+..
T Consensus 716 ~~G~I~~~Gty~el~~-~~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 716 KDGKIVESGTYEELLK-SGGDFAELAHEEE 744 (1381)
T ss_pred cCCeEecccCHHHHHh-cchhHHHHhhccc
Confidence 9999999999999996 5778888855443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=512.16 Aligned_cols=441 Identities=23% Similarity=0.354 Sum_probs=333.0
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1470)
..++++|++.+|+. ...|++ ||++.+||++|++|.||+|||||+|.|.|.++|++|++ .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 46889999999974 478999 99999999999999999999999999999999999996 88885
Q ss_pred -------eEEEcCCCCC-CCccHHHHHhcCCCCCH-------HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 661 -------KAYVPQSSWI-QTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 661 -------~ayv~Q~~~i-~~~Ti~eNI~~g~~~~~-------~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
|+.|+|+.-+ ++.||.|||.+|++... ...++..+ +-++.+.... .......+||+||
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~--~~~~~v~~Lsiaq 150 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDI--DPDTLVGDLSIAQ 150 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCC--ChhhhhhhCCHHH
Confidence 5899999776 67899999999976432 22221111 1122221111 1456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh-
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY- 803 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~- 803 (1470)
||-|+||||++.+++|++||||||+|+.+..+++|+.+.+-..+|.++|+|||+++++.. ||+|.||+||+.+..++.
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~ 230 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTA 230 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccc
Confidence 999999999999999999999999999999999997544434469999999999998765 999999999998865431
Q ss_pred hhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHHHH
Q 000475 804 EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAF 883 (1470)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y 883 (1470)
.++.. ++ -
T Consensus 231 ~~~~~----------------------------------------~~--------------------------------l 238 (500)
T COG1129 231 AETSE----------------------------------------DE--------------------------------L 238 (500)
T ss_pred cCCCH----------------------------------------HH--------------------------------H
Confidence 11100 00 0
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 884 ITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963 (1470)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~ 963 (1470)
++.+
T Consensus 239 v~~M---------------------------------------------------------------------------- 242 (500)
T COG1129 239 VRLM---------------------------------------------------------------------------- 242 (500)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000475 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY 1043 (1470)
Q Consensus 964 ~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~ 1043 (1470)
.|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 000475 1044 QVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1123 (1470)
Q Consensus 1044 ~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1123 (1470)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCc
Q 000475 1124 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN-IPSEAP 1202 (1470)
Q Consensus 1124 wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~-~~~E~~ 1202 (1470)
| +..+ .|. .
T Consensus 245 ------------------------------------------------------------------r--~~~~~~~~-~- 254 (500)
T COG1129 245 ------------------------------------------------------------------R--ELEDLFPE-P- 254 (500)
T ss_pred ------------------------------------------------------------------c--chhhhccc-c-
Confidence 0 0000 000 0
Q ss_pred cccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcC
Q 000475 1203 LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1282 (1470)
Q Consensus 1203 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1282 (1470)
+++ -+..-.++++|++.. ..++|+||++++||++||.|=-|||+|-++.+|||.-++.+|+|.+||
T Consensus 255 -------~~~-~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G 320 (500)
T COG1129 255 -------PEE-GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG 320 (500)
T ss_pred -------ccc-CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC
Confidence 000 011224677777642 258999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHH-HHhcccEEEccCCC---CC-cccHHHhcCcC--CCCCHH-HHHHHHHHcCcHHHHHhcc---cccCcccc
Q 000475 1283 VDISMIGLQ-DLRSRLSIIPQDPM---LF-QGTVRTNLDPL--EQHSDQ-EIWEVINKCHLAEIVRQDQ---RLLDAPVA 1351 (1470)
Q Consensus 1283 ~dI~~i~l~-~LR~~isiIpQdp~---LF-~gTIR~NLdp~--~~~sd~-eI~~aL~~~~L~~~v~~lp---~gLdt~v~ 1351 (1470)
.++.--+++ ..+..|+|||-|-- +| .-+|++|+... ..++.. -+...-++.-..+++..+. ...+.++
T Consensus 321 ~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v- 399 (500)
T COG1129 321 KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI- 399 (500)
T ss_pred EEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-
Confidence 998887766 48999999999852 44 55999999532 111100 1222333333444555442 2334444
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeC
Q 000475 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDE 1429 (1470)
Q Consensus 1352 e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~ 1429 (1470)
.+||||.+|+++|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++.+.. ||||+||.+
T Consensus 400 ---~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~ 476 (500)
T COG1129 400 ---GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMRE 476 (500)
T ss_pred ---hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999865 67999999999999975 999999999
Q ss_pred CEEEEecChh
Q 000475 1430 GKVLEYDSPR 1439 (1470)
Q Consensus 1430 G~vvE~g~p~ 1439 (1470)
|+++..=+..
T Consensus 477 Gri~~e~~~~ 486 (500)
T COG1129 477 GRIVGELDRE 486 (500)
T ss_pred CEEEEEeccc
Confidence 9998754433
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=486.50 Aligned_cols=525 Identities=17% Similarity=0.269 Sum_probs=393.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 283 FAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVE--SLTQRQWYFGANRIGIRVRSALTVLIYKR 360 (1470)
Q Consensus 283 ~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~l~~~~~~~~~~r~g~rir~~L~~~iy~K 360 (1470)
+..+.-++...-|.+.+.+++-+..+.. +.+..-+.++.+.|+-.... .+..+--.|..-++..----.+-..+|++
T Consensus 223 ll~i~rli~~~~pi~~k~iv~~ltap~~-~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 223 LLIIGRLINVSLPILSKWIVDELTAPDT-FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHhhhhHHhHHHHHHhhcCcch-hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 3334444555569999999988875443 33332233333322221110 11111111111111111122344566777
Q ss_pred hcccccC---CCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000475 361 SMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLA 436 (1470)
Q Consensus 361 ~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~~~~~~~~~ 436 (1470)
.+.||.. .|.+||+...|..-.+.+. +..+ +..+-...+.++++++..+....+|-.++.++.|.+..-+...+.
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iT 380 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKIT 380 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeee
Confidence 7776643 4589999999987777666 3333 334444556777777777767776666766666666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1470)
Q Consensus 437 ~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v 512 (1470)
....++|+++..+-.+--....+.|-|..++|.|+.|+. +.+.|.+..++|-+.+.....+......++-. -+.
T Consensus 381 eWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gll 458 (790)
T KOG0056|consen 381 EWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GLL 458 (790)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHh
Confidence 777888888877766655666788899999999999875 56667777777776655444433222222111 122
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccE
Q 000475 513 SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAI 591 (1470)
Q Consensus 513 ~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e-~~~~~~~~~~~~~~~~i 591 (1470)
....+.+|.+..+.++.|...-+..++-.+.+|++.+.....+++...+-.+|+-+.+++++ -.|.....|.......|
T Consensus 459 ~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i 538 (790)
T KOG0056|consen 459 AGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKI 538 (790)
T ss_pred hhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeE
Confidence 23335556666788999999999999999999999999999999999999999999998765 22322223333445679
Q ss_pred EEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE----------
Q 000475 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1470)
Q Consensus 592 ~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~---------- 660 (1470)
+++|++|+|+++ +|+|+| ||++.+|+.+|+|||+|+||||+++.|.+.++..+|.+ .++|+
T Consensus 539 ~fsnvtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 539 EFSNVTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQDIRNVTQSSL 610 (790)
T ss_pred EEEEeEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCchHHHHHHHHH
Confidence 999999999965 789999 99999999999999999999999999999999999986 88884
Q ss_pred ---eEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHc
Q 000475 661 ---KAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1470)
Q Consensus 661 ---~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1470)
+|.|||+..+||.||..||.+|++- ..+...++.++.+.++.+-.+|+|+.|.+||||-.||||+|||||+||++.
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 6999999999999999999999874 233344566888999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhchhHHHH
Q 000475 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1470)
Q Consensus 737 ~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1470)
++|.|++|||.|||||.++++.| +.++..+.+++|.|+|.|+++.+-+||.|+++++|+|++.|+++|+..+.++.+++
T Consensus 691 K~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~ 769 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYAD 769 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHH
Confidence 99999999999999999998888 56788888999999999999999999999999999999999999999865666666
Q ss_pred HHHH
Q 000475 817 QMKA 820 (1470)
Q Consensus 817 ~~~~ 820 (1470)
.-.+
T Consensus 770 MWq~ 773 (790)
T KOG0056|consen 770 MWQA 773 (790)
T ss_pred HHHH
Confidence 5543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-52 Score=477.96 Aligned_cols=528 Identities=21% Similarity=0.260 Sum_probs=415.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1470)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1470)
.....+....+++.++..++|..+-.+...++|+.+-++-|-+-...+ .+. -..+.++....++++.+++.--.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~T--Lv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPT--LVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888888888888888999887776665543332 122 23344455555666667766677888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000475 343 NRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLGAAP 417 (1470)
Q Consensus 343 ~r~g~rir~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-----~~~~~w~~pl~i~~~~~lL~~~lG~~~ 417 (1470)
.|+|.++-..|...||.-+++.....+..|+-..- -.|.+.+..|+. -+.+....|+-+++ ++++--.+| +.
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG-~~ 164 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLG-LI 164 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHH-HH
Confidence 99999999999999999987544444422221111 248888888864 34554445765543 345556788 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1470)
Q Consensus 418 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1470)
+++|.++++.+..+|-.++++ --++-.+..-+|....+-.++|..+|+.+|......++..+....-+.+..+....
T Consensus 165 a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 888888777777777776654 34455667778889999999999999999999999999888777666655544443
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000475 498 CSAIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1470)
Q Consensus 498 ~~~~~~~~~~~p~~--v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 575 (1470)
......+.-..=.+ ..++..|.|+..++++|+|.+++.--+..-.-.|+...-....++..++.|.+|++++|.....
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33332222222122 2234567788889999999999998888888899999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcE
Q 000475 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~ 654 (1470)
.+.. .+.+..+..+.++++++.-|.. .++++++ ||++.+|+-++|+||+|||||||.++|.|..+|.+|.|
T Consensus 322 ~~~~--m~LP~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 322 AAER--MPLPAPQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred ccCC--CCCCCCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 3322 2333445678999999976654 5799999 99999999999999999999999999999999999997
Q ss_pred EEECC-------------EeEEEcCCCCCCCccHHHHHh-cCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 655 IKVHG-------------KKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 655 i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~-~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
+++| .+||.||+-.+|.|||.|||. |+.+.|.++.-++.+..+.++-+-.+|+|++|.||+.|.+
T Consensus 394 -RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~ 472 (580)
T COG4618 394 -RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT 472 (580)
T ss_pred -EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence 8887 479999999999999999998 6667788877777777888888999999999999999999
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1470)
|||||||||+||||+|.||.+++||||-|+||.+-+..+.+-+..-..+|.|+|+|||+++.+..+|+|++|+||++...
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF 552 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence 99999999999999999999999999999999998888876544445579999999999999999999999999999999
Q ss_pred cChhhHHh
Q 000475 801 GKYEDLIA 808 (1470)
Q Consensus 801 g~~~~l~~ 808 (1470)
|+-+|.++
T Consensus 553 G~r~eVLa 560 (580)
T COG4618 553 GPREEVLA 560 (580)
T ss_pred CCHHHHHH
Confidence 99988876
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-51 Score=513.77 Aligned_cols=504 Identities=15% Similarity=0.156 Sum_probs=352.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1470)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1470)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.+.. .. -+.+++.+++..++.. ...+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~---~~--~~~~~~~~~~~~~~~~----~~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL---LV--LPEFLGLLLLLMAVTL----GSQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---hH--HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 566778888888888888888888888764 677788887553211 11 1111111111111111 2223344
Q ss_pred HHHHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000475 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1470)
Q Consensus 344 r~g~rir~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~ 420 (1470)
+++.++...+...+|+|.++++. ...++|+++|.++.|++.+..++..+..++...+.+++++++++. +.|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~-~~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAW-LSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 55666666677777888877654 344899999999999999998766666777777777777766664 34466676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKLLRLREIERDSLKKYLYTC 498 (1470)
Q Consensus 421 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~--wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1470)
.++++++.+.+...+.++..+..++.++..+++.+.++|.++|++++++.+ .++.+.++.++..++-.+...+.....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 666666666777888888888889999999999999999999999997432 223444444443221111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000475 499 SAIAFLFWASPTLVSVITFGVCILLKT---PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1470)
Q Consensus 499 ~~~~~~~~~~p~~v~~~~f~~~~~~~~---~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 575 (1470)
....... .++..+.++.+.+.++ ..+.+.+.....+...+..|+..+...+..+.+++++++|+.+++..+++
T Consensus 233 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 233 LSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111111 1111112222222221 12222222222223346789999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcE
Q 000475 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~ 654 (1470)
++.....+. .....++++|++|+|+++ .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++
T Consensus 309 ~~~~~~~~~-~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 309 AEFPRPQAF-PDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred ccccccccc-CcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 211111111 112469999999999743 357999 99999999999999999999999999999999999986
Q ss_pred EEECC-------------EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCC
Q 000475 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1470)
Q Consensus 655 i~~~g-------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~L 721 (1470)
.++| .++||+|+|.+|++|++|| +.+.+++..+++++.+++..+++. ++|. .+|.+|
T Consensus 381 -~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~L 450 (547)
T PRK10522 381 -LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKL 450 (547)
T ss_pred -EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCC
Confidence 7766 3699999999999999999 455566677777777777666542 3221 247899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000475 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1470)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1470)
|||||||++||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999998888765443322 48999999999999999999999999999875
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=561.11 Aligned_cols=476 Identities=19% Similarity=0.211 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHH
Q 000475 942 FFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL 1021 (1470)
Q Consensus 942 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v 1021 (1470)
++.....+.....+.+.-..+...+++++++.+...++..++|+++|++++|++.++..+... ..+....+.+++.+++
T Consensus 137 l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~l 215 (1490)
T TIGR01271 137 LLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGL 215 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333344445556666666777777899999999999999999999999999999999866543 3344555555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHH
Q 000475 1022 MSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1101 (1470)
Q Consensus 1022 ~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~ 1101 (1470)
+.....+..++.+.++++++.++ .+..+.....++..........+..+|.++|+++||.|++|+.|.
T Consensus 216 L~~~~G~~~l~~l~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~ 283 (1490)
T TIGR01271 216 IWELLEVNGFCGLGFLILLALFQ------------ACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAME 283 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 44333333322222222332222 222233334444445556677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000475 1102 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQ-AWVIWNLCN 1180 (1470)
Q Consensus 1102 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~-~~~i~~~~~ 1180 (1470)
++..+.-+...+..........|..... .....+..++.+..+.+..+ .+++.+-.++++...+...+ ..+...+..
T Consensus 284 ~~i~~~R~~El~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~ 361 (1490)
T TIGR01271 284 KIIKNIRQDELKLTRKIAYLRYFYSSAF-FFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQT 361 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776665444433332222221111 11111111111122222222 34544444444444444433 345666777
Q ss_pred HHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCC----------------------------
Q 000475 1181 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT---------------------------- 1232 (1470)
Q Consensus 1181 le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------------------------- 1232 (1470)
+....+|++||.+|++.++..+. +. + +....|+++|++|.|+..
T Consensus 362 ~~~a~~s~~RI~~fL~~~e~~~~--~~-----~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1490)
T TIGR01271 362 WYDSLGAITKIQDFLCKEEYKTL--EY-----N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSN 433 (1490)
T ss_pred HHHHHHHHHHHHHHhcCcccccc--cc-----c-CCCCceEEecceEecCCccccccccccccccccccccccccccccc
Confidence 88889999999999976543211 00 0 112358888888888421
Q ss_pred ----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCc
Q 000475 1233 ----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1308 (1470)
Q Consensus 1233 ----~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~ 1308 (1470)
..++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+|| +++|+||+|.+|+
T Consensus 434 ~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~ 500 (1490)
T TIGR01271 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMP 500 (1490)
T ss_pred cccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCC
Confidence 13589999999999999999999999999999999999999999999998 5999999999999
Q ss_pred ccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 000475 1309 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388 (1470)
Q Consensus 1309 gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD 1388 (1470)
+|||+|+.....+++++..++++.|+|.+.+..+|+|.+|.+|++|.+||||||||++||||++++|+|++||||||+||
T Consensus 501 ~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 501 GTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred ccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99999998655667777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1389 TATDNVIQQ-TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1389 ~~Td~~Iq~-~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
+++.+.|.+ .+++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+. ++.|.+.+.
T Consensus 581 ~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 646 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLL 646 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHh
Confidence 999999987 46777789999999999999999999999999999999999999864 456766653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=486.16 Aligned_cols=439 Identities=24% Similarity=0.407 Sum_probs=339.0
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1470)
..+++++.+..|+. ...+++ ||++++||++|++|+||+|||||+++|.|.++|++|++ .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46899999999973 345667 99999999999999999999999999999999999996 89885
Q ss_pred -------eEEEcCCCCC-CCccHHHHHhcCCCCC----------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 661 -------KAYVPQSSWI-QTGTIRENILFGKDMR----------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 661 -------~ayv~Q~~~i-~~~Ti~eNI~~g~~~~----------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
||+|+|++-+ .+.||.|||..|.+-. .++.++..+.+++.-| ..++..+||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCC
Confidence 5999999887 5679999999998632 2334444445554433 336678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
=||||||.|-+|||++|+++|||||||.|-|...+++|+.+.+-...|+|||+|||.++++.. ||++.||+.|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg-- 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG-- 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe--
Confidence 999999999999999999999999999999999999998654444569999999999999876 99999999999763
Q ss_pred ChhhHHhhchhHHHHHHHHhhhcccCCCCCCCCcccccCcccccchhhhhccCCCCCCCCCCCCccchhhcCcchHHHHH
Q 000475 802 KYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYS 881 (1470)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 881 (1470)
+++...+....+..+++
T Consensus 221 t~~~~~~~t~~ela~lM--------------------------------------------------------------- 237 (501)
T COG3845 221 TVDPVAETTEEELAELM--------------------------------------------------------------- 237 (501)
T ss_pred eecCCCCCCHHHHHHHh---------------------------------------------------------------
Confidence 22110000000000000
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccccchhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 882 AFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQR 961 (1470)
Q Consensus 882 ~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 961 (1470)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000475 962 LFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI 1041 (1470)
Q Consensus 962 l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~ 1041 (1470)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000475 1042 WYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGT 1121 (1470)
Q Consensus 1042 ~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1121 (1470)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Q 000475 1122 MEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1201 (1470)
Q Consensus 1122 ~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1201 (1470)
..+ .+ ..+.+
T Consensus 238 -------------------------vG~-~v-------------------------------------------~~~~~- 247 (501)
T COG3845 238 -------------------------VGR-EV-------------------------------------------VLRVV- 247 (501)
T ss_pred -------------------------cCC-cc-------------------------------------------ccccc-
Confidence 000 00 00000
Q ss_pred ccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEc
Q 000475 1202 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281 (1470)
Q Consensus 1202 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID 1281 (1470)
. ++.-|..-.++++|+++.=+.+ -..++||||++++||++||.|-.|.|-+.|+.+|.|+..|.+|+|.++
T Consensus 248 -------~-~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~ 318 (501)
T COG3845 248 -------K-PPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLN 318 (501)
T ss_pred -------c-CCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEEC
Confidence 0 1111333468999999875443 358999999999999999999999999999999999999999999999
Q ss_pred CEeC-CCCCHHHHh-cccEEEccCCC----CCcccHHHhcCcCCCC----------CHHHHHHHHHHcCcHHHHHh---c
Q 000475 1282 GVDI-SMIGLQDLR-SRLSIIPQDPM----LFQGTVRTNLDPLEQH----------SDQEIWEVINKCHLAEIVRQ---D 1342 (1470)
Q Consensus 1282 G~dI-~~i~l~~LR-~~isiIpQdp~----LF~gTIR~NLdp~~~~----------sd~eI~~aL~~~~L~~~v~~---l 1342 (1470)
|.|+ ...+....| ..+++||.|.. ..+-|+.+|+-+.... .-.++.+..+ +.+++ .
T Consensus 319 G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr 393 (501)
T COG3845 319 GKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVR 393 (501)
T ss_pred CEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCcc
Confidence 9998 667777755 57999999983 5667999998542211 1223322221 11211 1
Q ss_pred ccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-
Q 000475 1343 QRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID- 1420 (1470)
Q Consensus 1343 p~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~- 1420 (1470)
+.+.++++ .+||||+.|++-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|+.|+-+++.+..
T Consensus 394 ~~~~~~~a----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~l 469 (501)
T COG3845 394 APSPDAPA----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL 469 (501)
T ss_pred CCCCCcch----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHh
Confidence 23344444 4799999999999999999999999999999999999999999888754 78999999999999977
Q ss_pred cCEEEEEeCCEEEEecChhH
Q 000475 1421 NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1421 ~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
||||.||.+|+++....|++
T Consensus 470 sDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 470 SDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hheeeeeeCCceeccccccc
Confidence 99999999999998888776
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=488.81 Aligned_cols=238 Identities=38% Similarity=0.649 Sum_probs=229.2
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
|.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.|+.+++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000475 1298 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1298 siIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1377 (1470)
+||||+|.+|++|+++|++|+...+++++|++++.+++.+++..+|+++|+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHH
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457 (1470)
Q Consensus 1378 LlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~~~ 1457 (1470)
|+|||||++||+.++..+++.|++.+.+||||+||||++++..||||++|++|+++|+|+|++|+++ .+.|++++.+..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999985 589999998776
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=501.95 Aligned_cols=501 Identities=17% Similarity=0.160 Sum_probs=371.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354 (1470)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~rir~~L~ 354 (1470)
.+++..++.++.+++....|++.+.+++.+.+.+. ... ...+.+++++++..++.++ ..|...++..++|..++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~----~~~~~~~~~~~~r~~l~ 171 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSA----IKYLLKELKLRFRVRLT 171 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 56677778888899999999999999998764331 111 1011222223333333333 33445556666666666
Q ss_pred HHHHHHhccc----c--cCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000475 355 VLIYKRSMAI----K--FAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1470)
Q Consensus 355 ~~iy~K~L~l----s--~~~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i 427 (1470)
..++++.++- + ..+..+|++.+.+++|++.+.+.+.. +..+...++.++.+++.++..++|..+++.++.+++
T Consensus 172 ~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 172 RYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666655542 2 11225799999999999999887754 445666677777788888877886666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1470)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (1470)
.+.+...+.++..+...+..+..++-....+|.++|+++||.|+-|+...+++++.-++-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77888889999999999999999999999999999999999999999988888776544444444444333333222221
Q ss_pred HH----HHHHHHHHHHHHHh-c----CCCCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000475 508 SP----TLVSVITFGVCILL-K----TPLTSGAVLS-AL---ATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1470)
Q Consensus 508 ~p----~~v~~~~f~~~~~~-~----~~L~~~~vft-~l---~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 574 (1470)
.. ..+..+..+..++. . +.+|.+..+. ++ .++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222222232332 1 5688876554 33 34667789999999999999999999999999997532
Q ss_pred CCC-------CCCC-----------------CCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEE
Q 000475 575 QKK-------PITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVC 629 (1470)
Q Consensus 575 ~~~-------~~~~-----------------~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~iv 629 (1470)
+.+ .... .........|+++|++|+|+++ .+.+++ ||++++||+++|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~Iv 484 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLIC 484 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEE
Confidence 100 0000 0001122459999999999633 357899 9999999999999
Q ss_pred cCCCCChHHHHHHHhCCCcCCCCcEEEEC--CEeEEEcCCCCCCCccHHHHHhcCC--------CCCHHHHHHHHHHhcc
Q 000475 630 GSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCAL 699 (1470)
Q Consensus 630 G~~GsGKSTLl~~llG~~~~~~G~~i~~~--g~~ayv~Q~~~i~~~Ti~eNI~~g~--------~~~~~~y~~v~~~~~l 699 (1470)
||||||||||+++|+|+++|.+|++ ..+ ..++||+|+|+++++|++|||.++. ...+++.+++++.+++
T Consensus 485 G~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 485 GPNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999986 554 3689999999999999999999974 2345667788999999
Q ss_pred hHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q 000475 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1470)
Q Consensus 700 ~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~ 779 (1470)
.+.++. |.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++...+.+. ++. .++|+|+|||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~--~~~tvI~isH~ 638 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE--FGITLFSVSHR 638 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH--cCCEEEEEeCc
Confidence 887776 888888876 5779999999999999999999999999999999999998887654 443 38999999999
Q ss_pred cchhhhcCEEEEEeC
Q 000475 780 LEFLDAADLVLVMKD 794 (1470)
Q Consensus 780 ~~~l~~~d~i~~l~~ 794 (1470)
++.++.||+|++|++
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999989999999973
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=467.86 Aligned_cols=259 Identities=21% Similarity=0.369 Sum_probs=222.6
Q ss_pred HhhhHHHHHHHHhcCCCCCccccC------CCCC---CCCCCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEE
Q 000475 1183 NKMISVERILQFTNIPSEAPLVIK------NSRP---SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1253 (1470)
Q Consensus 1183 ~~~~sveRi~~~~~~~~E~~~~~~------~~~~---~~~wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIV 1253 (1470)
+.+.+++|+.+|...+.|.....+ +..+ +..||..+.|+++|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888776655432111 1111 3469999999999999999765567999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCC--CCCHHHHhcccEEEccCCCCCcccHHHhcC--c-CCCCCH
Q 000475 1254 GRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--P-LEQHSD 1323 (1470)
Q Consensus 1254 GrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~--~i~l~~LR~~isiIpQdp~LF~gTIR~NLd--p-~~~~sd 1323 (1470)
||||||||||+++|+|+++ |++|+|.|||+|+. ++++.++|++++|+||+|.+|++|+++|++ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 466788999999999999999999999998 3 234555
Q ss_pred HHH-----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000475 1324 QEI-----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398 (1470)
Q Consensus 1324 ~eI-----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~ 1398 (1470)
++. .++++.++++ +++++.+++.|.+||||||||+|||||++++|+||+|||||++||+++++.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 4566777764 3456778899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCh
Q 000475 1399 IREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448 (1470)
Q Consensus 1399 I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~ 1448 (1470)
|++.++++|+|+||||++++.+ ||||+||++|+|+|.|+|+++++++...
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~~ 318 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNK 318 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCcH
Confidence 9999889999999999999998 9999999999999999999999876543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=432.63 Aligned_cols=452 Identities=22% Similarity=0.294 Sum_probs=350.8
Q ss_pred HHHHHHHHhcccccC---CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000475 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1470)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~-~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~~~~i~ 428 (1470)
+.-..|++.+.|+-. ++.+|.+.--+..-.+.|+...+++ ..+....+++++..+++++..||+.+...++++++.
T Consensus 17 la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY 96 (497)
T COG5265 17 LAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILY 96 (497)
T ss_pred HHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 334446666665532 2355555444444455566555543 345556689999999999999988888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000475 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE----IERDSLKKYLYTCSAIAFL 504 (1470)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~----~E~~~l~~~~~~~~~~~~~ 504 (1470)
..+........-.++++..++-.+-....-+.|-|..++|.|+-|+.+..+..+..+ .+++......++...-..+
T Consensus 97 ~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I 176 (497)
T COG5265 97 LLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAI 176 (497)
T ss_pred HHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 777666666666666666555555556677999999999999999988777665533 3332222222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCC
Q 000475 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPT 583 (1470)
Q Consensus 505 ~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e-~~~~~~~~~ 583 (1470)
+.. .+....+....-+..+.+|.+...-.-++...+..|++.+......+.|++.-.+++.+.+..+- ..+....++
T Consensus 177 ~~~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~ 254 (497)
T COG5265 177 FST--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254 (497)
T ss_pred HHH--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCcc
Confidence 111 11112233333455778999999999999999999999999999999999999999998887653 222211111
Q ss_pred CC-CCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-
Q 000475 584 SK-ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK- 660 (1470)
Q Consensus 584 ~~-~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~- 660 (1470)
-. .....|.+++++|.|+++ .+.|++ ++.+++|+.++|+|++|+||||+++.|.+.+++.+|.+ .++|+
T Consensus 255 L~~~~~g~v~F~~V~F~y~~~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qd 326 (497)
T COG5265 255 LWPVRLGAVAFINVSFAYDPR-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQD 326 (497)
T ss_pred ccccccceEEEEEEEeecccc-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchh
Confidence 11 334579999999999865 688999 99999999999999999999999999999999999986 88874
Q ss_pred ------------eEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 661 ------------KAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 661 ------------~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
+|.|||+..+||.|+..||.+|++. .++...++.++..+.+.++.+|+|.+|.+||+|-.|||||||
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 6999999999999999999999875 455566778889999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHH
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 807 (1470)
||++||++.++|+|++|||.|||||.||++.|-. .++...+|+|.+++.|+++.+-.||.|+||++|+|++.|++++++
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 9999999999999999999999999999888854 566677899999999999999999999999999999999999999
Q ss_pred hhchhHHHH
Q 000475 808 ADQNSELVR 816 (1470)
Q Consensus 808 ~~~~~~~~~ 816 (1470)
+ .++.+++
T Consensus 486 ~-~~g~ya~ 493 (497)
T COG5265 486 A-AGGLYAE 493 (497)
T ss_pred H-cCChHHH
Confidence 8 4555543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=433.00 Aligned_cols=194 Identities=24% Similarity=0.392 Sum_probs=162.1
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|.++||+|+|.++ |.++++++|-|..+++|++|||||+|||||++++.+.+.|+.|.+.-.-.. +++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 58999999999866 479999999999999999999999999999999999999999987543221 233
Q ss_pred EEcc---CCCCCcccHHHhcCc-CC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1299 IIPQ---DPMLFQGTVRTNLDP-LE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1299 iIpQ---dp~LF~gTIR~NLdp-~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
+.-| +-.-++-|.-+++.| +. .-..+++...|.++||.... .+.++ ++||+|||.|+++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~------q~~p~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA------QVVPM----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc------cccch----hhcccccchhHHHHHHHhc
Confidence 3334 334566677777765 33 35667788899999986433 34445 4799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+|.||||||||++||.+|-..+.++|.+. ..+||+|+|+...|.. +++|++.++|.+..++
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecC
Confidence 99999999999999999999999999875 5599999999999977 9999999999987763
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=384.69 Aligned_cols=217 Identities=29% Similarity=0.459 Sum_probs=194.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC-CCHHHHhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM-IGLQDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~-i~l~~LR~~i 1297 (1470)
-|+++|++.+|... .||||||++|++||++.|+||||||||||+++|.+|.+|++|+|.|||.++.. ..+..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 59999999999999999999999999999999999999999999999987743 3788899999
Q ss_pred EEEccCCCCCcc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
|+|+|...||+. |+-+|+... ...+ .+.-.+.|+++||.|....-|. .|||||+||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999987 999998632 1222 3335677999999998877764 5899999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~ 1446 (1470)
|||.-+|+|+++|||||+|||+.-..+.+++++.. .|.|.|+|||.+....+ +|||+.||+|+++|.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999998865 57899999999999988 99999999999999999999999876
Q ss_pred Ch
Q 000475 1447 SS 1448 (1470)
Q Consensus 1447 s~ 1448 (1470)
+.
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 54
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=402.54 Aligned_cols=225 Identities=28% Similarity=0.475 Sum_probs=196.6
Q ss_pred EEEEeEEEEeCCC---CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC---HHHH
Q 000475 1220 IELENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDL 1293 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~---~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~L 1293 (1470)
|+++||++.|... .+.+|+||||+|++||+.||+|+||+|||||++++-++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999762 357999999999999999999999999999999999999999999999999888876 5667
Q ss_pred hcccEEEccCCCCCc-ccHHHhcC-cCC--CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1294 RSRLSIIPQDPMLFQ-GTVRTNLD-PLE--QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1294 R~~isiIpQdp~LF~-gTIR~NLd-p~~--~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
|++||+|+|++-|++ -||.+|+. |.. ..+.+ .+.+.|+.+||.|...+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999998 59999996 542 34444 4567888898887665544 57999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+|||||..+|+||+.|||||+|||+|.+.|.+.|++.. -|-||++|+|.++.+++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999888643 47899999999999988 9999999999999999999999
Q ss_pred hcCCCh-HHHHHHH
Q 000475 1443 EDNSSS-FSKLVAE 1455 (1470)
Q Consensus 1443 ~~~~s~-f~~lv~~ 1455 (1470)
.+|... =.+++.+
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 988543 3344443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=411.08 Aligned_cols=240 Identities=48% Similarity=0.771 Sum_probs=224.1
Q ss_pred CCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhc
Q 000475 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295 (1470)
Q Consensus 1216 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1295 (1470)
..|.|+++|++++|+.....+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754346999999999999999999999999999999999999999999999999999998889999
Q ss_pred ccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1296 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1296 ~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555677789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~~ 1455 (1470)
++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+.+++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998777899999999999998999999999999999999999998777888877653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=406.41 Aligned_cols=194 Identities=22% Similarity=0.335 Sum_probs=165.9
Q ss_pred CCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhc
Q 000475 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295 (1470)
Q Consensus 1216 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1295 (1470)
+...+++.+|+|.|.|+.++.++++++.++.-+++++||++|.||||+++++.+-.+|..|.+.+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3446999999999999887899999999999999999999999999999999999999999988876 78
Q ss_pred ccEEEccCCCCCcccHHHhcC-------cCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1296 RLSIIPQDPMLFQGTVRTNLD-------PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1296 ~isiIpQdp~LF~gTIR~NLd-------p~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|++-.|.-+=| ..-|.. -+...+++|+.+.|...|+...+... + + ..||||||-|+++|
T Consensus 428 ri~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~-----s-i----~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ-----S-I----ASLSGGQKSRVAFA 494 (582)
T ss_pred eecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc-----c-c----cccCCcchhHHHHH
Confidence 999999976533 222321 12334899999999998876544322 1 2 45999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
-....+|.+|||||||++||.++-..+-++|+.. +.-||+|+|+.+.|.. |+-+++.++|+|.-+
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999999874 3479999999999977 999999999999864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=398.35 Aligned_cols=234 Identities=31% Similarity=0.541 Sum_probs=215.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+.+..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1378 (1470)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+++..+|.++++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997543 34566788888999999999999999999888889999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1379 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
+|||||++||+.+...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999988778999999999999988999999999999999999999975 577777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=371.03 Aligned_cols=220 Identities=26% Similarity=0.428 Sum_probs=198.7
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-----cEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-----GRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~-----G~I~IDG~dI~~--i~l 1290 (1470)
..++++|+++.|.. ..+|+|||+.|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 359999999999999999999999999999999999999875 999999999987 568
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcCC---C----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~~---~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
-+||+++|+|.|.|.-|..||++|+.... . .-|+-+.++|+++.|||.|.. .|+ +.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~----~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLH----KSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hhh----CCccCCChhHHH
Confidence 89999999999999999999999997531 1 124557889999999999864 343 455679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
||||||||.-+|+||+||||||+|||-+...|.+.|.+..++-|||+|||.+.-... +|+...+-.|+++|+|..+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999998766 9999999999999999999999
Q ss_pred hcCC
Q 000475 1443 EDNS 1446 (1470)
Q Consensus 1443 ~~~~ 1446 (1470)
.+|.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=392.46 Aligned_cols=221 Identities=60% Similarity=0.967 Sum_probs=209.4
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975444699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000475 1298 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1298 siIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1377 (1470)
+|+||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++..++.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998777778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecCh
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1378 LlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p 1438 (1470)
|+|||||++||+.+.+.+.+.|++..++.|||+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=409.57 Aligned_cols=262 Identities=21% Similarity=0.305 Sum_probs=218.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEeeeEEEeCC
Q 000475 524 KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDA 602 (1470)
Q Consensus 524 ~~~L~~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e-~~~~~~~~~~~~~~~~i~~~~~~f~w~~ 602 (1470)
.+++++.++|+.++.|+.+..|+..+|..... ..|+++|+..++ +...... .......|+++|++++|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC
Confidence 35689999999999999999999888765443 569999988766 2211111 1123457999999999974
Q ss_pred CccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEE---------------CCEe
Q 000475 603 REENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKV---------------HGKK 661 (1470)
Q Consensus 603 ~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~---------------~g~~ 661 (1470)
. ..+.|++ ||+|++||+++|+|+||||||||+++|+|+++ |++|++ .+ .+.+
T Consensus 93 ~------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i 165 (329)
T PRK14257 93 R------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRI 165 (329)
T ss_pred C------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccE
Confidence 3 2468999 99999999999999999999999999999986 468975 43 3458
Q ss_pred EEEcCCCCCCCccHHHHHhcCCCCC----HH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHH
Q 000475 662 AYVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1470)
Q Consensus 662 ayv~Q~~~i~~~Ti~eNI~~g~~~~----~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1470)
+||||+||++++|++|||.|+..++ ++ .++++++.|++..+++ +.+++++.+|||||||||+|||
T Consensus 166 ~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 166 GMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred EEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999875322 22 2677788888765543 5688999999999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHHhh
Q 000475 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIAD 809 (1470)
Q Consensus 734 Al~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 809 (1470)
|++++|+|+||||||+|||+++..++ .+++..+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 239 Al~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999998875 5678777778999999999999887 999999999999999999998763
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=372.20 Aligned_cols=217 Identities=30% Similarity=0.484 Sum_probs=195.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+|+||+++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcH--HHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLA--EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~--~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
|-|.--||.. ||.+|+..- ...+ ++++.|.|+.+||. +|..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999977 999999632 2233 45577888899985 4666665 358999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~ 1446 (1470)
||..+|+||+||||.++||+-|...+|+-+.+.. -++|+|+|||+++.... +|||.||++|+++.+|+|++++++|.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999887643 37899999999998655 99999999999999999999999988
Q ss_pred ChH
Q 000475 1447 SSF 1449 (1470)
Q Consensus 1447 s~f 1449 (1470)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 777
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=385.60 Aligned_cols=231 Identities=33% Similarity=0.538 Sum_probs=211.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996543359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1378 (1470)
+||+|.+|..|+++|+... ..++.+++.+.++.+++.+++..+|.++++.......+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999754 334566777888899999999999999999888888999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000475 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1379 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~ 1451 (1470)
+|||||++||+.+...+.+.|++..++.|||+++|+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999988788999999999999988999999999999999999999864 455544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=377.24 Aligned_cols=207 Identities=61% Similarity=0.972 Sum_probs=188.8
Q ss_pred CCCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH
Q 000475 1214 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1293 (1470)
Q Consensus 1214 wp~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1293 (1470)
||..+.++++|++++|+....++++|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1294 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1294 R~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
|++++|+||+|.+|++|+++|+..+..++++++.++++ +......||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998765555555555543 234567899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecCh
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p 1438 (1470)
+|++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=382.91 Aligned_cols=226 Identities=38% Similarity=0.618 Sum_probs=209.7
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
|.|+++|++++|+.+ .++++|+||++++||++||+|+||||||||+++|.|+.+|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999633 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCCCCcccHHHhcCcCC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1298 SIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1298 siIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
+|+||+|.+|++|+++|+.... ...++++.++++.+++.+++..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345677888999999999999999999999888889999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1377 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
+|+|||||++||+.+.+.+.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999999888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=382.49 Aligned_cols=233 Identities=36% Similarity=0.604 Sum_probs=213.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.+||.+++..+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1378 (1470)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999753 345677788899999999999999999999998889999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 000475 1379 VLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1379 lLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
+|||||++||+++...+.+.|++..++.|||+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999887668899999999999988999999999999999999998864 566665543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=378.40 Aligned_cols=213 Identities=31% Similarity=0.526 Sum_probs=188.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.++++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.||.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-CCcccHHHhcC----c----CCCCC--HH-HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1299 IIPQDPM-LFQGTVRTNLD----P----LEQHS--DQ-EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1299 iIpQdp~-LF~gTIR~NLd----p----~~~~s--d~-eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
|+||++. -|.-||+|-+. | +...+ |+ .+.+||+.+++.++..+ .+ ..||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-------~~----~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-------PV----DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-------cc----cccChhHHHHHH
Confidence 9999975 45558888764 2 22222 33 47788999999887643 33 359999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti-~~~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||.++|+||+|||||++||....-.|.+.+++.. ++.|||+|.|+++.. +.||++++|++|+++..|+|++.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999865 469999999999876 4599999999999999999999986
Q ss_pred c
Q 000475 1444 D 1444 (1470)
Q Consensus 1444 ~ 1444 (1470)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=399.96 Aligned_cols=219 Identities=26% Similarity=0.436 Sum_probs=191.8
Q ss_pred EEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---Hh
Q 000475 1220 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1294 (1470)
|+++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEccCCCCCc-ccHHHhcCc-C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1295 SRLSIIPQDPMLFQ-GTVRTNLDP-L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~-gTIR~NLdp-~--~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
++|++|||++.+|. .|+++|+.. . ...+ ++++.++++.++|.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 699999962 2 1223 234678899998876544333 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||+.+|+||+||||||+||+.|...|.+.|++..+ +.|||+|||+++.+.. ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998653 7899999999999976 99999999999999999999987
Q ss_pred cCCChH
Q 000475 1444 DNSSSF 1449 (1470)
Q Consensus 1444 ~~~s~f 1449 (1470)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 765544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=356.36 Aligned_cols=203 Identities=29% Similarity=0.394 Sum_probs=172.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.|+++|++.+|.. ...|++ |++|++||.++||||+||||||||++|.|+-+|++|++ .++|.
T Consensus 2 mi~i~~l~K~fg~--------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC--------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 4789999999974 468999 99999999999999999999999999999999999996 88883
Q ss_pred ------eEEEcCCCCCCC-ccHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 661 ------KAYVPQSSWIQT-GTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 661 ------~ayv~Q~~~i~~-~Ti~eNI~~g~----~~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
+|+|+|+..+|. .||.|||..+. ... +++-.+.++..+|.+..+.+ +..|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----------P~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY-----------PAQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC-----------ccccCcHH
Confidence 589999988865 69999999873 122 23334456666666655544 46899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 804 (1470)
||||||||||..+|+++|+|||||||||+...++.+-.......|.|.|+|||++.|... ||||+.|++|+|+++|+++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999998876443444568999999999999987 9999999999999999999
Q ss_pred hHHhhchh
Q 000475 805 DLIADQNS 812 (1470)
Q Consensus 805 ~l~~~~~~ 812 (1470)
++..++..
T Consensus 222 ~~f~~p~~ 229 (240)
T COG1126 222 EFFDNPKS 229 (240)
T ss_pred HHhcCCCC
Confidence 99875443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=380.75 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=210.4
Q ss_pred EEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1220 IELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
|+++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000475 1299 IIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1299 iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1377 (1470)
|+||+|.+|+.|+++|+... .....+++.+.++..++.+++..+|.|+++.......+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999753 33456678888899999999999999999998888899999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452 (1470)
Q Consensus 1378 LlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~l 1452 (1470)
|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|+++++.+. .+..+.+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHH
Confidence 9999999999999999999999987678999999999999988999999999999999999998864 3444443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=363.04 Aligned_cols=226 Identities=28% Similarity=0.450 Sum_probs=190.8
Q ss_pred cEEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC-HHHHhc
Q 000475 1219 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~ 1295 (1470)
.++++|+++.|+.+. .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+...-. .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997643 15999999999999999999999999999999999999999999999998776543 335788
Q ss_pred ccEEEccCCCC-C--cccHHHhcC-cCCC----CCHHHHHHHHHHcCcHHHH-HhcccccCccccCCCCCCChhHHHHHH
Q 000475 1296 RLSIIPQDPML-F--QGTVRTNLD-PLEQ----HSDQEIWEVINKCHLAEIV-RQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1296 ~isiIpQdp~L-F--~gTIR~NLd-p~~~----~sd~eI~~aL~~~~L~~~v-~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
.+.+|+|||.- + .-||++-|. |... ...++++++|+.+||.+-. .+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999962 2 226666663 4332 2355699999999997644 3333 359999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC--cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR--CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~--~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||.-+|++||||||||+||....+.|.+.+.+..++ -|.|+|||++..+.. ||||+||++|+++|.++..++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999876654 499999999999987 99999999999999999999998
Q ss_pred cCCChHHHHHHH
Q 000475 1444 DNSSSFSKLVAE 1455 (1470)
Q Consensus 1444 ~~~s~f~~lv~~ 1455 (1470)
.+...|.+..-+
T Consensus 232 ~~~h~ytr~Ll~ 243 (252)
T COG1124 232 HPSHPYTRELLE 243 (252)
T ss_pred CCccHHHHHHHH
Confidence 766666655443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=375.20 Aligned_cols=219 Identities=32% Similarity=0.531 Sum_probs=201.3
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
|.|+++|++++|+....++++|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334599999999999999999999999999999999999999999999999999888877889999
Q ss_pred EEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1298 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1298 siIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
+++||+|.+|..|+++|+... ...+.+++.++++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999753 2345667888999999999999999999999988889999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEec
Q 000475 1377 ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g 1436 (1470)
+|||||||++||+++...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=372.37 Aligned_cols=209 Identities=30% Similarity=0.458 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+.+ + ||+||||++++||.+||+||||||||||+++++|+++|++|+|.++|.+++.... |.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999865 4 9999999999999999999999999999999999999999999999998766432 57999
Q ss_pred EEccCC---CCCcccHHHhcCcCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1299 IIPQDP---MLFQGTVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1299 iIpQdp---~LF~gTIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
||||.. .-|.-||+|-+.... ..+.+++.+||+++++.++. |.++++ |||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHHH
Confidence 999965 457889999886421 12347899999999999875 456654 99999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+.|||||+++|++|+|||||++||+.++..|.+.|++..+ ||||++|+|+++.+++ ||+|+.|+ +++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999998764 8999999999999977 99999887 5689999999998
Q ss_pred hc
Q 000475 1443 ED 1444 (1470)
Q Consensus 1443 ~~ 1444 (1470)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=355.00 Aligned_cols=221 Identities=31% Similarity=0.504 Sum_probs=193.4
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHh
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1294 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1294 (1470)
-.|++++|+++|.. ..|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.||..++-. .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 46999999999964 3699999999999999999999999999999999999999999999999999999864 469
Q ss_pred cccEEEccCCCCCcc-cHHHhcC-cCCCC---CHHHHH----HHHHHcCcHHHHH-hcccccCccccCCCCCCChhHHHH
Q 000475 1295 SRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIW----EVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~g-TIR~NLd-p~~~~---sd~eI~----~aL~~~~L~~~v~-~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
+++|++.|...||+. ||+||+. |..+| +++++. .-|+.|||..-+. ..| +.||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999987 9999997 55444 455543 4577788876632 233 4699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
++||||+.-+|+||++|||||++||-+...+-+.|++.. -+.|+++|||+++++.. ||||+++.+|+|+-.|+|+++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999988888654 37899999999999987 899999999999999999999
Q ss_pred hhcCCChHHH
Q 000475 1442 LEDNSSSFSK 1451 (1470)
Q Consensus 1442 l~~~~s~f~~ 1451 (1470)
.+.++...++
T Consensus 234 ~~sd~P~v~q 243 (263)
T COG1127 234 LASDDPWVRQ 243 (263)
T ss_pred HhCCCHHHHH
Confidence 9876655444
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=376.49 Aligned_cols=211 Identities=31% Similarity=0.494 Sum_probs=185.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCcEEEEcCEeCCCCC--HHH
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV-----EPSGGRILIDGVDISMIG--LQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~-----~p~~G~I~IDG~dI~~i~--l~~ 1292 (1470)
|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999643 5999999999999999999999999999999999999 999999999999998876 567
Q ss_pred HhcccEEEccCCCCCcccHHHhcCcCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1293 LRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 13457788888888665443221 45799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
++|||||+++|++|+|||||++||+++...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987656899999999999875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=391.39 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=184.6
Q ss_pred CCcEEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC-----
Q 000475 1217 SGKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----- 1288 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----- 1288 (1470)
...|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34599999999997432 3599999999999999999999999999999999999999999999999998753
Q ss_pred -----------CHHHHhcccEEEccCC--CCCcccHHHhcCcCC---CCCHHH----HHHHHHHcCcHHHHHhcccccCc
Q 000475 1289 -----------GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQE----IWEVINKCHLAEIVRQDQRLLDA 1348 (1470)
Q Consensus 1289 -----------~l~~LR~~isiIpQdp--~LF~gTIR~NLdp~~---~~sd~e----I~~aL~~~~L~~~v~~lp~gLdt 1348 (1470)
....+|++++|+||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 689999999996421 223333 333444444421 2
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEE
Q 000475 1349 PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLV 1426 (1470)
Q Consensus 1349 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlv 1426 (1470)
.....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||||++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 3445567899999999999999999999999999999999999999999998753 5799999999999885 5999999
Q ss_pred EeCCEEEEecChhHHhhc
Q 000475 1427 LDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1427 L~~G~vvE~g~p~~Ll~~ 1444 (1470)
|++|++++.|+|++++++
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999998764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=410.86 Aligned_cols=199 Identities=25% Similarity=0.322 Sum_probs=168.1
Q ss_pred CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEEcCEeCCCCCHHHHhcccEEEccCCC-CCc
Q 000475 1232 TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQ 1308 (1470)
Q Consensus 1232 ~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~-LF~ 1308 (1470)
+....|+|||=-++||--+|++|.||||||||++.|.+-.+ ..+|+|+|||.+..+ +..++++|||-|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34468999999999999999999999999999999998764 247999999998765 678999999999875 445
Q ss_pred ccHHHhcCc------CCCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC-CE
Q 000475 1309 GTVRTNLDP------LEQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK-RI 1377 (1470)
Q Consensus 1309 gTIR~NLdp------~~~~sd~e----I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~-~I 1377 (1470)
-||||-|.. -.+.+++| +.++++..+|.++- |..||..|+.||+.||.||.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 599999852 13445544 45666666666543 66799999999999999999999999999 89
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh--hhcCEEEEEeC-CEEEEecChhH
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV--IDNDLVLVLDE-GKVLEYDSPRQ 1440 (1470)
Q Consensus 1378 LlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti--~~~DrIlvL~~-G~vvE~g~p~~ 1440 (1470)
|+||||||+||+++...|.+++|+.. .|+||++.-|.++.. +..|+++.|++ |+.|-+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999854 789999999999864 56999999975 79999988643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=375.78 Aligned_cols=212 Identities=31% Similarity=0.443 Sum_probs=184.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH---HHHhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1296 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred cEEEccCCCCCcc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.++.. ..+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-------LYP----AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-------CCh----hhCCHHHHHHHHH
Confidence 9999999999986 999999632 1123 234667788877755432 222 4699999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998643 7899999999999876 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=369.67 Aligned_cols=215 Identities=32% Similarity=0.488 Sum_probs=194.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCC-CCCHHHHhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~-~i~l~~LR~~i 1297 (1470)
.|+++|++++|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58899999999877 77999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEccCC--CCCcccHHHhcCcCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
|+|.|+| .+|..||.+.+.... ..+. +.+.++|+.+++.++....| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999997532 2344 34778899999987743333 57999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
.+|..+|+|||||||||+||+...+.+.+.+++..+ +.|+|+|+|+++.+.. |||++||++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999998754 4799999999999988 9999999999999999999999764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=375.10 Aligned_cols=219 Identities=24% Similarity=0.415 Sum_probs=192.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEEcCEeCCCCCHHHHhc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~ 1295 (1470)
.|+++|++++|+. +++|+|+||++++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ccEEEccCCCCCcccHHHhcCcCC---C------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1296 RLSIIPQDPMLFQGTVRTNLDPLE---Q------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1296 ~isiIpQdp~LF~gTIR~NLdp~~---~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+++..+ ....+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1234577888998886655432 23345689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987678999999999998865 9999999999999999999998654
Q ss_pred C
Q 000475 1446 S 1446 (1470)
Q Consensus 1446 ~ 1446 (1470)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=372.44 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=192.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999963 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCCCCcccHHHhcCcCC---CCCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccC
Q 000475 1299 IIPQDPMLFQGTVRTNLDPLE---QHSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1374 (1470)
Q Consensus 1299 iIpQdp~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1374 (1470)
|+||+|.+|+.|+++|+.... ...++++.+.++..++. +... .....||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997422 22345677788887774 2221 23457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000475 1375 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1375 ~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~ 1451 (1470)
|++|+|||||++||+++...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+|.+++.++...+.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998764 37899999999999876 9999999999999999999998765545544
Q ss_pred H
Q 000475 1452 L 1452 (1470)
Q Consensus 1452 l 1452 (1470)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=379.53 Aligned_cols=216 Identities=27% Similarity=0.455 Sum_probs=196.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++||+.+|.+.. +++|+|++|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|++++++.+ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999988876 8999
Q ss_pred EEccCCCCCcc-cHHHhcCc-CC------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDP-LE------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp-~~------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
+|+|+..||+. ||++|+.. .. +--++++.++++..++.+...+.|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999988 99999974 22 1236678899999999999888774 589999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
|.++|++++||||.|+||......+...|++..+ +.|+|.|||+....+. +|||.||++|+|.+.|+|.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999998888877543 5899999999998876 999999999999999999999999887
Q ss_pred hH
Q 000475 1448 SF 1449 (1470)
Q Consensus 1448 ~f 1449 (1470)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 77
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=381.03 Aligned_cols=215 Identities=26% Similarity=0.417 Sum_probs=190.9
Q ss_pred cEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1219 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
.|+++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--CCCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|+||+| .++..|+++|+.... ..+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 356779999997421 122 345788999999877654433 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988643 7999999999999978999999999999999999998764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=369.48 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=197.7
Q ss_pred CCCcEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHh
Q 000475 1216 SSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1216 ~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR 1294 (1470)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 23699999999999999999999999999999999999999999999999999888777888
Q ss_pred cccEEEccCCCCCcccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1295 SRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
++++|+||+|.+|++|+++|++.. .....+++++..+..++.+++..+|.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999843 3344556677777788899999998889988888899999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~v 1432 (1470)
+|++|+|||||++||+++.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=350.75 Aligned_cols=213 Identities=26% Similarity=0.418 Sum_probs=190.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC---HHHHhc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~ 1295 (1470)
.|+++||+.+|+. ...+|+||||+|++||.|+|+|+||||||||+++|.|+++|++|+|.++|.++.... ++++|+
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4899999999974 456999999999999999999999999999999999999999999999999999988 677889
Q ss_pred ccEEEccCCCCCcc-cHHHhcCc------------CCCCCHH---HHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDP------------LEQHSDQ---EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1359 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp------------~~~~sd~---eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSg 1359 (1470)
++|+|.|.+-|-.- |+-+|+.- ++-++.+ ...++|+++|+.++.-.. -++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999988765 89999731 2344443 477899999998876543 247999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1360 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
||+||++|||||.++|+|++=|||||+||+.+.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999754 57999999999999876 9999999999999999
Q ss_pred ChhHHhh
Q 000475 1437 SPRQLLE 1443 (1470)
Q Consensus 1437 ~p~~Ll~ 1443 (1470)
++.||-+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9999643
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=389.66 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=190.1
Q ss_pred EEEEeEEEEeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---Hh
Q 000475 1220 IELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~--~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1294 (1470)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEccCCCCCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1295 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.++... . ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~----~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-------Y----PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-------C----hhhCCHHHHHHHH
Confidence 89999999999886 6999999632 1222 2356677787777654432 2 3469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999987
Q ss_pred cCCChHHH
Q 000475 1444 DNSSSFSK 1451 (1470)
Q Consensus 1444 ~~~s~f~~ 1451 (1470)
++...+.+
T Consensus 231 ~~~~~~~~ 238 (343)
T PRK11153 231 HPKHPLTR 238 (343)
T ss_pred CCCcHHHH
Confidence 65544433
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=388.12 Aligned_cols=217 Identities=22% Similarity=0.368 Sum_probs=191.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999433 3599999999999999999999999999999999999999999999999999987764 47899
Q ss_pred EEccCCCCCcc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 999999732 1 223 345778899999987766554 3699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 7899999999998865 999999999999999999999988766
Q ss_pred hH
Q 000475 1448 SF 1449 (1470)
Q Consensus 1448 ~f 1449 (1470)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 55
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=367.15 Aligned_cols=210 Identities=24% Similarity=0.357 Sum_probs=183.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++||+++|+.+..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999965324699999999999999999999999999999999999999999999999999764 3667889999
Q ss_pred EccCCCCC-cccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLF-QGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF-~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+| ..|+++|+... ...+ ++++.++++..++.+.. ++.+ .+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHHH
Confidence 99999988 57999998632 1122 24567788888876543 3333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999876 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.86 Aligned_cols=222 Identities=24% Similarity=0.346 Sum_probs=191.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999999864 3455
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC----CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE----QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~----~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|..|+++|+.... .. .++.+.++++.+++.+.+ ++.+|+. ..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHHH
Confidence 6889999999999999999999996321 11 234577788888875443 2344554 4679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7665444
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=377.13 Aligned_cols=212 Identities=27% Similarity=0.412 Sum_probs=187.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 45999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCC--CCCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1299 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1299 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 678899999997421 122 345788899999876654443 369999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
||+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 47999999999999865 9999999999999999987643
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=379.81 Aligned_cols=214 Identities=32% Similarity=0.502 Sum_probs=185.4
Q ss_pred EEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC--HHHHh
Q 000475 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR 1294 (1470)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996532 36999999999999999999999999999999999999999999999999998743 46789
Q ss_pred cccEEEccCC--CCCcccHHHhcCcCC---CCCH----HHHHHHHHHcCcH--HHHHhcccccCccccCCCCCCChhHHH
Q 000475 1295 SRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLA--EIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1295 ~~isiIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~--~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
++++|+||+| .+|+.|+++|+.... ..++ +++.++++.++|. +. .| .....|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~----~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-------KD----KSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-------cc----CCcccCCHHHHH
Confidence 9999999998 578899999996321 2333 3467788888774 22 22 234579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998643 7899999999999865 99999999999999999999
Q ss_pred Hhhc
Q 000475 1441 LLED 1444 (1470)
Q Consensus 1441 Ll~~ 1444 (1470)
++++
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=372.58 Aligned_cols=224 Identities=26% Similarity=0.413 Sum_probs=192.7
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CC
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1289 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1289 (1470)
.+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999964 359999999999999999999999999999999999986 589999999999864 45
Q ss_pred HHHHhcccEEEccCCCCCcccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000475 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1290 l~~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. .......+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999642 1222 3457788888887544322 2234456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
|||++|||||+++|+||+|||||++||+.+.+.+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987677899999999999865 99999999999999999999
Q ss_pred HhhcCCChH
Q 000475 1441 LLEDNSSSF 1449 (1470)
Q Consensus 1441 Ll~~~~s~f 1449 (1470)
+.+.+.-.+
T Consensus 242 ~~~~~~~~~ 250 (260)
T PRK10744 242 IFTKPAKKQ 250 (260)
T ss_pred HHhCCCcHH
Confidence 987554333
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=385.65 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=192.0
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++...+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999963 4599999999999999999999999999999999999999999999999999887643 6889
Q ss_pred EEEccCCCCCcc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999732 1 122 356778888988876654333 469999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~ 1446 (1470)
||+++|++|+||||||+||+.+...+++.|++..+ ++|+|+|||+.+.+.. ||||+||++|++++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988654 7999999999999866 99999999999999999999998887
Q ss_pred ChH
Q 000475 1447 SSF 1449 (1470)
Q Consensus 1447 s~f 1449 (1470)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 655
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=353.31 Aligned_cols=203 Identities=29% Similarity=0.435 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---H-
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L- 1293 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L- 1293 (1470)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++-.|++|+|.++|.|+..++-++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996543 36999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcccEEEccCCCCCcc-cHHHhcC-c--CCCCC----HHHHHHHHHHcCcHHHHH-hcccccCccccCCCCCCChhHHHH
Q 000475 1294 RSRLSIIPQDPMLFQG-TVRTNLD-P--LEQHS----DQEIWEVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1294 R~~isiIpQdp~LF~g-TIR~NLd-p--~~~~s----d~eI~~aL~~~~L~~~v~-~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
|++||+|+|+..|++. |++||+. | +.... ++.+.+.++.+||.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999988876 9999987 2 22222 445666777778876544 323 4699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEE
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVL 1433 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~vv 1433 (1470)
+||||||+.+|+|++.||||.+||.+|.+.|.+.+++.. .++|||+|||+......|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999874 478999999999999999999999999944
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=371.85 Aligned_cols=219 Identities=26% Similarity=0.412 Sum_probs=189.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ....
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 589999999999975 3456
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC----CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||++.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 788999999999999999999999632 11 123567788888888654432 123345679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCC
Q 000475 1443 EDNS 1446 (1470)
Q Consensus 1443 ~~~~ 1446 (1470)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 7654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=337.85 Aligned_cols=207 Identities=27% Similarity=0.431 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---Hhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1296 (1470)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999877 77999999999999999999999999999999999999999999999999999998665 8999
Q ss_pred cEEEccCCCCCcc-cHHHhcC-cCC--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLD-PLE--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLd-p~~--~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
||+|.||--|... |+.||+. |.. ..+ .+++.++|+.+||.+....+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999987755 9999986 332 222 3457889999999999988884 5899999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p 1438 (1470)
||+..+|++|+-||||-+||+++...|.+.+.+.. .|.||++.||+.+.+.+ --|++.+++|+++..+.+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998764 68999999999999987 568999999999988764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.74 Aligned_cols=212 Identities=28% Similarity=0.452 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC---HHHHhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~~ 1296 (1470)
++++|++++|+.+ ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 45999999999999999999999999999999999999999999999999998876 4568899
Q ss_pred cEEEccCCCCCc-ccHHHhcCcC------------C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000475 1297 LSIIPQDPMLFQ-GTVRTNLDPL------------E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360 (1470)
Q Consensus 1297 isiIpQdp~LF~-gTIR~NLdp~------------~---~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgG 1360 (1470)
++++||++.+|. .|+++|+... + ...++++.++++.+++.+.. + ..+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-------Y----QRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-------C----CCcccCCHH
Confidence 999999998887 5999999531 1 11234566777777775432 2 234579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000475 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1361 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~ 1437 (1470)
||||++|||||+++|+||+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 37999999999999985 99999999999999999
Q ss_pred hhHHhh
Q 000475 1438 PRQLLE 1443 (1470)
Q Consensus 1438 p~~Ll~ 1443 (1470)
++++.+
T Consensus 229 ~~~~~~ 234 (241)
T cd03256 229 PAELTD 234 (241)
T ss_pred HHHhhH
Confidence 998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=376.57 Aligned_cols=215 Identities=25% Similarity=0.424 Sum_probs=191.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--CCCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1299 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1299 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
|+||+| .+++.|+++|+.... ..+ ++++.++++.++|.++....| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 567789999996421 123 244778888888887765544 369999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||+++|+||+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998653 7899999999999988999999999999999999988753
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=359.57 Aligned_cols=199 Identities=27% Similarity=0.409 Sum_probs=182.9
Q ss_pred EEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcc
Q 000475 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1296 (1470)
|+++||+++|++.. +++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1297 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1297 isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
++|+||+|.+|++|+++|+......++++.+++++.+++.+++...|.|+++.+.+.+.+||+|||||++|||||+++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765566777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000475 1377 ILVLDEATASIDTATDNVIQQ-TIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGK 1431 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~-~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1431 (1470)
+++|||||++||+++.+.+.+ .+++.. ++.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 566553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=368.03 Aligned_cols=212 Identities=24% Similarity=0.401 Sum_probs=183.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EccCCCCCc-ccHHHhcCcCC---CC----C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPLE---QH----S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~~---~~----s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
+||+|.+|. .|+++|+.... .. + ++++.++++.+++.+..... ..+||+|||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999886 59999997421 11 1 23456778888776544332 24699999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999988643 7899999999998765 999999999999999999999865
Q ss_pred CC
Q 000475 1445 NS 1446 (1470)
Q Consensus 1445 ~~ 1446 (1470)
+.
T Consensus 228 ~~ 229 (239)
T cd03296 228 PA 229 (239)
T ss_pred CC
Confidence 43
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=365.36 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1296 (1470)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999965434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEccCCCCCcc-cHHHhcCcC---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPL---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~---~~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
++|+||+|.+|.. |+++|+... .. ..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998874 999999631 11 12456788899998876654433 36999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~v 1432 (1470)
|||+++|+||+|||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998763 47899999999999976 999999999985
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=369.48 Aligned_cols=221 Identities=29% Similarity=0.461 Sum_probs=190.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEEcCEeCCCC--CHHH
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISMI--GLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~~ 1292 (1470)
|+++|++++|+.. .+++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... ....
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999642 5999999999999999999999999999999999999998 99999999999763 4556
Q ss_pred HhcccEEEccCCCCCcccHHHhcCcC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1293 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~gTIR~NLdp~---~~-~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
.|++++|+||++.+|..|+++|+... .. .+ ++++.++++..++.+.+.. .++. ...+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~----~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RLHD----SALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---HhhC----CcccCCHHHHHH
Confidence 78999999999999999999999631 11 12 3457778888888644321 1232 345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++|||||+++|++++|||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999866 99999999999999999999987
Q ss_pred cCCChH
Q 000475 1444 DNSSSF 1449 (1470)
Q Consensus 1444 ~~~s~f 1449 (1470)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 655544
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=369.14 Aligned_cols=218 Identities=26% Similarity=0.359 Sum_probs=194.4
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcc
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1296 (1470)
.+.|+++|++++ + .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 356999999985 2 3599999999999999999999999999999999999999999999998 4
Q ss_pred cEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1297 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1297 isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
++|+||++.+|++|+++|+.......+.++.++++.+++.+.+..+|.+.++.+++.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998643445556778888899999999999999999998899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 000475 1377 ILVLDEATASIDTATDNVIQQT-IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~-I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~l 1452 (1470)
||+|||||++||+++...+.+. +++..+++|||+|+|+++.+..||+|++|++|+++++|+++++.+. .+.|.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 9999999999999999988764 4555568999999999999988999999999999999999999864 3445433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=368.56 Aligned_cols=212 Identities=26% Similarity=0.428 Sum_probs=181.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH-hcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~is 1298 (1470)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999998877664 67899
Q ss_pred EEccCCCCCcc-cHHHhcCcCC----CC-------------CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLE----QH-------------SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgG 1360 (1470)
|+||+|.+|.+ |+++|+.... .. .++++.++++..++.+ ........||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCHH
Confidence 99999999987 9999985321 10 1223445555555533 223344579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000475 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1361 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p 1438 (1470)
||||++|||||+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998764 67899999999999976 999999999999999999
Q ss_pred hHHhhc
Q 000475 1439 RQLLED 1444 (1470)
Q Consensus 1439 ~~Ll~~ 1444 (1470)
+++.++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=369.55 Aligned_cols=223 Identities=28% Similarity=0.448 Sum_probs=192.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCCCHHHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIGLQDL 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~l~~L 1293 (1470)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEccCCCCC-cccHHHhcCcC---CCC------CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1294 RSRLSIIPQDPMLF-QGTVRTNLDPL---EQH------SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1294 R~~isiIpQdp~LF-~gTIR~NLdp~---~~~------sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
|++++|+||+|.+| +.|+++|+... ... .++++.++++.+++.+.+. ..+|..+ .+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHHH
Confidence 99999999999755 57999999631 111 1346788889888865432 2234443 579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999865 9999999999999999999998
Q ss_pred hcCCChHH
Q 000475 1443 EDNSSSFS 1450 (1470)
Q Consensus 1443 ~~~~s~f~ 1450 (1470)
+++...+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14247 234 TNPRHELT 241 (250)
T ss_pred cCCccHHH
Confidence 76554443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=369.40 Aligned_cols=220 Identities=25% Similarity=0.401 Sum_probs=187.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCCCCc-ccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+. ......+.+||+|||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999986 59999996321 122 3346677777776430 011233467999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCh
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~ 1448 (1470)
+++|++|+|||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+++...
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 230 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCCh
Confidence 99999999999999999999999999999864 37999999999998765 9999999999999999999998654433
Q ss_pred H
Q 000475 1449 F 1449 (1470)
Q Consensus 1449 f 1449 (1470)
+
T Consensus 231 ~ 231 (242)
T cd03295 231 F 231 (242)
T ss_pred H
Confidence 3
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=385.75 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=190.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||++++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999887654 67899
Q ss_pred EEccCCCCCc-ccHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQ-GTVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~-gTIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||++.+|. .|+++|+... . ..+ ++++.++++..+|.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999732 1 122 345777888888766554333 4699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
|+++|++|+||||||+||..+...+++.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987653 7899999999999866 999999999999999999999998876
Q ss_pred hHH
Q 000475 1448 SFS 1450 (1470)
Q Consensus 1448 ~f~ 1450 (1470)
.|.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=366.98 Aligned_cols=214 Identities=28% Similarity=0.452 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHh
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1294 (1470)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996431 2699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEccCCCCCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1295 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 5999998631 1122 34577888888886554332 2469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
||||++++|++|+|||||++||+.+...+.+.|++.. .++|||+++|+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999864 37899999999999876 99999999999999999999875
Q ss_pred c
Q 000475 1444 D 1444 (1470)
Q Consensus 1444 ~ 1444 (1470)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=386.07 Aligned_cols=205 Identities=24% Similarity=0.406 Sum_probs=182.3
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH----hcccEEEccCCCCCcc
Q 000475 1234 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG 1309 (1470)
Q Consensus 1234 ~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~isiIpQdp~LF~g 1309 (1470)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+..++ |++++|+||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000475 1310 -TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381 (1470)
Q Consensus 1310 -TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1381 (1470)
|+++|+... ...+ ++++.++|+.++|.++..+.| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999632 1122 356778899998876655444 469999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1382 EATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1382 EaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
||||+||+.+.+.+++.+++.. .++|||+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998764 37999999999998755 99999999999999999999998765544
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=370.86 Aligned_cols=222 Identities=23% Similarity=0.457 Sum_probs=190.4
Q ss_pred CCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--C
Q 000475 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--I 1288 (1470)
Q Consensus 1216 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i 1288 (1470)
....|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999964 359999999999999999999999999999999999987 689999999999863 5
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHhcCcCC---CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1289 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1289 ~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~---~~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
+..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+.. .+| ....+||+|||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLN----ESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhC----CCcccCCHHHH
Confidence 6678899999999999999899999997432 11 23456777888877543221 223 33467999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeC-----------C
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDE-----------G 1430 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~-----------G 1430 (1470)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||+|++|++ |
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999999987667899999999999866 999999996 6
Q ss_pred EEEEecChhHHhhcCC
Q 000475 1431 KVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1431 ~vvE~g~p~~Ll~~~~ 1446 (1470)
+++|.|++.++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 241 YLVEFNETKKIFNSPK 256 (269)
T ss_pred eEEEeCCHHHHHhCcC
Confidence 7999999999987654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=370.88 Aligned_cols=223 Identities=23% Similarity=0.396 Sum_probs=191.9
Q ss_pred CCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--C
Q 000475 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--I 1288 (1470)
Q Consensus 1216 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i 1288 (1470)
+.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999964 3599999999999999999999999999999999999975 89999999999975 3
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHhcCcC---CCC--C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000475 1289 GLQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQH--S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1359 (1470)
Q Consensus 1289 ~l~~LR~~isiIpQdp~LF~gTIR~NLdp~---~~~--s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSg 1359 (1470)
+...+|++++++||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+.. .+ ...+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD---RL----HEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH---Hh----hCCcccCCH
Confidence 456788999999999999989999999631 111 1 3456788888888654432 12 234567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000475 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1360 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p 1438 (1470)
|||||++|||||+.+|++|+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999965 899999999999999999
Q ss_pred hHHhhcCCC
Q 000475 1439 RQLLEDNSS 1447 (1470)
Q Consensus 1439 ~~Ll~~~~s 1447 (1470)
++++.++..
T Consensus 247 ~~~~~~~~~ 255 (267)
T PRK14235 247 EKMFTNPDD 255 (267)
T ss_pred HHHHhCCCC
Confidence 999865543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=376.04 Aligned_cols=215 Identities=26% Similarity=0.418 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC----CHHH
Q 000475 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1292 (1470)
|+++|++++|+++. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999999764 3467
Q ss_pred HhcccEEEccCC--CCCcccHHHhcCcCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1293 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1293 LR~~isiIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
+|++|+|+||+| .+|..|+++|+.... ..+. +.+.++++.+++.. ........+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 899999999998 688899999996321 2233 23445555555531 1122345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
|++|||||+.+|+||+|||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+|.+
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999863 47999999999999864 99999999999999999999
Q ss_pred Hhhc
Q 000475 1441 LLED 1444 (1470)
Q Consensus 1441 Ll~~ 1444 (1470)
++++
T Consensus 233 ~~~~ 236 (286)
T PRK13646 233 LFKD 236 (286)
T ss_pred HHhC
Confidence 8764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=368.37 Aligned_cols=211 Identities=28% Similarity=0.422 Sum_probs=182.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH---HHHhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1296 (1470)
|+++|++++|+.+ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999623 459999999999999999999999999999999999999999999999999987654 447889
Q ss_pred cEEEccCCCCCc-ccHHHhcCcCC------------C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000475 1297 LSIIPQDPMLFQ-GTVRTNLDPLE------------Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360 (1470)
Q Consensus 1297 isiIpQdp~LF~-gTIR~NLdp~~------------~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgG 1360 (1470)
++|+||++.+|. .|+++|+.... . ..++++.++++.+++.+... ....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999998886 59999995310 1 12345677788887765432 234579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000475 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1361 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~ 1437 (1470)
||||++|||||+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998864 37899999999999865 99999999999999999
Q ss_pred hhHHh
Q 000475 1438 PRQLL 1442 (1470)
Q Consensus 1438 p~~Ll 1442 (1470)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=369.84 Aligned_cols=222 Identities=29% Similarity=0.414 Sum_probs=189.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCC--CCCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS--MIGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~--~i~l~ 1291 (1470)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhcccEEEccCCCCCcc-cHHHhcCcC---CC--CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000475 1292 DLRSRLSIIPQDPMLFQG-TVRTNLDPL---EQ--HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~g-TIR~NLdp~---~~--~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
.+|++++++||+|.+|.+ |+++|+... .. .. ++++.++++..++.+.+.. .++ ....+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLN----DYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhc----cChhhCCHHH
Confidence 789999999999999976 999999631 11 11 2456777888877544321 123 3446799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
|||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999876 99999999999999999999
Q ss_pred HhhcCCChH
Q 000475 1441 LLEDNSSSF 1449 (1470)
Q Consensus 1441 Ll~~~~s~f 1449 (1470)
+++++...+
T Consensus 235 ~~~~~~~~~ 243 (253)
T PRK14267 235 VFENPEHEL 243 (253)
T ss_pred HHhCCCcHH
Confidence 987554334
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=375.58 Aligned_cols=214 Identities=27% Similarity=0.400 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC----CCHHH
Q 000475 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1292 (1470)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999963 34567
Q ss_pred HhcccEEEccCC--CCCcccHHHhcCcCC---CCCH----HHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhHH
Q 000475 1293 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1293 LR~~isiIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
+|++++|++|+| .+|..|+.+|+.... ..+. +++.++++.+++. ++. + ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-------E----KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-------c----CCcccCCHHHH
Confidence 899999999998 789999999996321 1222 3466777777773 232 2 23457999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998754 47899999999998854 99999999999999999999
Q ss_pred Hhhc
Q 000475 1441 LLED 1444 (1470)
Q Consensus 1441 Ll~~ 1444 (1470)
+.++
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=374.54 Aligned_cols=214 Identities=30% Similarity=0.471 Sum_probs=186.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCC--CCCHHHHhcc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSR 1296 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~ 1296 (1470)
-|+++|++++|+++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 45999999999999999999999999999999999999999999999999984 3446678999
Q ss_pred cEEEccCC--CCCcccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1297 LSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1297 isiIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.+++.++. |. ...+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-------~~----~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-------DK----PTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-------hC----CcccCCHHHHHHHHH
Confidence 99999998 57889999999642 12232 3466777888886543 22 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||||+++|+||+|||||++||+++...+.+.|++..+ ++|||+++|+++.+.. ||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988653 7999999999999974 999999999999999999998763
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=371.23 Aligned_cols=215 Identities=27% Similarity=0.471 Sum_probs=188.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999644456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCC--CCCcccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1299 IIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1299 iIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
|+||+| .++..|+++|+... ...+++ .+.++++..++.++.... ..+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45677999999642 123333 356677888876654433 3579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998643 4899999999999888999999999999999999998764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=361.49 Aligned_cols=202 Identities=26% Similarity=0.416 Sum_probs=175.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998654 35778999
Q ss_pred EccCCCCCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|. .|+++|+... ...+ ++++.++++.+++.++....| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999998886 5999999632 1112 345677888888866544332 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+++|++|+|||||++||+++...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999999866 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=381.69 Aligned_cols=216 Identities=25% Similarity=0.419 Sum_probs=189.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3789999999964 359999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEccCCCCCcc-cHHHhcCcC-C------CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL-E------QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~-~------~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999732 1 122 345677888888866544333 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||+++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988654 6899999999999876 99999999999999999999998
Q ss_pred cCCChH
Q 000475 1444 DNSSSF 1449 (1470)
Q Consensus 1444 ~~~s~f 1449 (1470)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 776555
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=363.75 Aligned_cols=208 Identities=24% Similarity=0.362 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---H
Q 000475 1219 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1293 (1470)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccCCCCCcc-cHHHhcCc---CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1294 R-SRLSIIPQDPMLFQG-TVRTNLDP---LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1294 R-~~isiIpQdp~LF~g-TIR~NLdp---~~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
| ++++|+||+|.+|.+ |+++|+.. ..... ++++.++++.+++.+.... ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 689999999998876 99999863 11222 3456778888877554322 235799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecC
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~ 1437 (1470)
++||||++++|+||+|||||++||+++...+.+.|++.. +++|||+|+|+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4799999999999999999999999999998775
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=372.29 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=186.8
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH----hcc
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSR 1296 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~ 1296 (1470)
.++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45678888854 358999999999999999999999999999999999999999999999999988765543 468
Q ss_pred cEEEccCCCCCc-ccHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
++|+||+|.+|. .|+++|+... ... .++++.++++.+++.++....| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 5999999631 111 2345778888998877655443 36999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
|||+++|+||+|||||++||+.+.+.+.+.|++.. .++|||+++|+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998864 37999999999999865 9999999999999999999998766
Q ss_pred CChHH
Q 000475 1446 SSSFS 1450 (1470)
Q Consensus 1446 ~s~f~ 1450 (1470)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 55544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=363.36 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+ .+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999963 3599999999999999999999999999999999999999999999999999877654 4468999
Q ss_pred EccCCCC-CcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPML-FQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~L-F~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ......+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5679999996431 122 2345566666666432 2333457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
+++|+||+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999864 47899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=377.36 Aligned_cols=225 Identities=25% Similarity=0.401 Sum_probs=190.9
Q ss_pred cEEEEeEEEEeCCC--------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH
Q 000475 1219 KIELENLLVQYNPT--------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1290 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~--------~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1290 (1470)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcccEEEccCCC--CCcc-cHHHhcC-cC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000475 1291 Q---DLRSRLSIIPQDPM--LFQG-TVRTNLD-PL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356 (1470)
Q Consensus 1291 ~---~LR~~isiIpQdp~--LF~g-TIR~NLd-p~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1356 (1470)
. .+|+++++|||||. |+.. |+.+|+. +. ...+ .+++.++|++++|.+ ..+|... ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p----~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP----HM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC----cc
Confidence 4 56889999999994 5553 8888874 21 1122 245678888888842 2234433 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000475 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1433 (1470)
Q Consensus 1357 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv 1433 (1470)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998764 37999999999999975 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHH
Q 000475 1434 EYDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1434 E~g~p~~Ll~~~~s~f~~lv 1453 (1470)
|.|+++++++++...|.+..
T Consensus 235 e~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcCCCCHHHHHH
Confidence 99999999988766666543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=362.05 Aligned_cols=212 Identities=25% Similarity=0.424 Sum_probs=178.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH-hcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~is 1298 (1470)
|+++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877664 67899
Q ss_pred EEccCCCCCcc-cHHHhcCcCCC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHc
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLEQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~~~-~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1372 (1470)
|+||+|.+|.+ |+++|+..... .. .+++.++++..+ .+++.++. ...+||+|||||++|||||+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~~----~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRKQ----LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhhC----chhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964321 11 112223333321 12222333 34579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1373 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++|++|+|||||++||+++...+.+.|++.. .++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998764 57899999999999866 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=348.72 Aligned_cols=178 Identities=35% Similarity=0.559 Sum_probs=166.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678999999
Q ss_pred EccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1379 (1470)
+||+|.+|+.|+++|+ ..+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCEEEEec
Q 000475 1380 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1380 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g 1436 (1470)
|||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999877789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=376.86 Aligned_cols=223 Identities=23% Similarity=0.378 Sum_probs=189.3
Q ss_pred cEEEEeEEEEeCCC-----------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC
Q 000475 1219 KIELENLLVQYNPT-----------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1287 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~-----------~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~ 1287 (1470)
-++++|++++|+.. ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2369999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcccEEEccCC--CCC-cccHHHhcCc----CC-CCCH----HHHHHHHHHcCcHHHHHhcccccCccccC
Q 000475 1288 IGLQD---LRSRLSIIPQDP--MLF-QGTVRTNLDP----LE-QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAE 1352 (1470)
Q Consensus 1288 i~l~~---LR~~isiIpQdp--~LF-~gTIR~NLdp----~~-~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e 1352 (1470)
++.++ +|++++||||+| .++ ..||++|+.. .. ..+. +.+.++++.+++.+. .++.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~------~~~~---- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN------LINR---- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH------HhcC----
Confidence 87544 678999999999 477 4699999852 11 2333 334567777777321 1222
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeC
Q 000475 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDE 1429 (1470)
Q Consensus 1353 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~ 1429 (1470)
....||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999999999987643 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhhcCCChHHH
Q 000475 1430 GKVLEYDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1430 G~vvE~g~p~~Ll~~~~s~f~~ 1451 (1470)
|+++|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999877666655
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=370.53 Aligned_cols=216 Identities=27% Similarity=0.447 Sum_probs=191.1
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEEcCEeCCCCCHHHHh
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~---G~I~IDG~dI~~i~l~~LR 1294 (1470)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996543459999999999999999999999999999999999999987 8999999999888777889
Q ss_pred cccEEEccCC--CCCcccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1295 SRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1295 ~~isiIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999742 12333 34778899999877654443 47999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhh
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
+|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988653 789999999999998899999999999999999998875
Q ss_pred c
Q 000475 1444 D 1444 (1470)
Q Consensus 1444 ~ 1444 (1470)
+
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=366.71 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=189.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC---CCC--CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---VEP--SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl---~~p--~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.|+++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 3599999999999999999999999999999999997 344 589999999999764 346
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC---CC-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~---~~-----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|.+|+++|+... .. ..+++++++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 788899999999999999999999631 11 123457788888887554422 123445679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14245 234 TNPEKEA 240 (250)
T ss_pred cCCCChH
Confidence 7654433
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=368.86 Aligned_cols=221 Identities=24% Similarity=0.414 Sum_probs=189.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCCCC--HHH
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMIG--LQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i~--l~~ 1292 (1470)
-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcccEEEccCCCCCcccHHHhcCcC---CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1293 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~gTIR~NLdp~---~~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 78999999999999999999998631 11 12345677888888755322 1223345679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987778999999999999876 9999999999999999999999
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 8766554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=359.44 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEccCCCCCcc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998531 112 23457778888888665433 23579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
|++++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47999999999999876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=376.10 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=186.1
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998754 4579999
Q ss_pred EEEccCCCCCc-ccHHHhcCcCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+|+||+|.+|. .|+++|+..+. ..++ +++.++++.+++.+ ..+++++ +||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCchh----hCCHHHHHHHHHHH
Confidence 99999999886 59999997422 1232 33556677776643 3455553 69999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||+++|++|+|||||++||+.+...+++.|++.. +++|||++||+++.+.. ||||++|++|++++.|+|+++.++
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999864 47899999999999976 999999999999999999999765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=367.53 Aligned_cols=220 Identities=26% Similarity=0.441 Sum_probs=190.8
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1290 (1470)
..|+++|++++|+. .++|+|+||++++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 459999999999999999999999999999999999996 589999999999964 346
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
..+|+.++|+||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. ........||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999642 111 23456778888888655432 23345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
||++||||++++|++|+|||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999866 999999999999999999999
Q ss_pred hhcCC
Q 000475 1442 LEDNS 1446 (1470)
Q Consensus 1442 l~~~~ 1446 (1470)
.+.+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 86543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=366.60 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=187.6
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC-------
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG------- 1289 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~------- 1289 (1470)
.+.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 35999999999999999999999999999999999999999999999999986431
Q ss_pred ------HHHHhcccEEEccCCCCCcc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000475 1290 ------LQDLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354 (1470)
Q Consensus 1290 ------l~~LR~~isiIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1354 (1470)
...+|++++|+||+|.+|.+ |+++|+... .... ++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 34678899999999999975 999999631 1112 345677778777755431 2234
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000475 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432 (1470)
Q Consensus 1355 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~v 1432 (1470)
..||+|||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998864 47999999999999987 999999999999
Q ss_pred EEecChhHHhhcCC
Q 000475 1433 LEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1433 vE~g~p~~Ll~~~~ 1446 (1470)
++.|+++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=367.83 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=189.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999963 3599999999999999999999999999999999999985 799999999998653 345
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
.+|++++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..++++ ...||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----hhhCCHHHHHH
Confidence 678899999999999999999999631 1222 234677888887753321 223443 45799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++|||||+++|+||+|||||++||+++...+.+.|++..+++|||+|+|+++.+.+ ||+|++|++|++++.|+|+++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999876 99999999999999999999987
Q ss_pred cCCChH
Q 000475 1444 DNSSSF 1449 (1470)
Q Consensus 1444 ~~~s~f 1449 (1470)
++...+
T Consensus 243 ~~~~~~ 248 (258)
T PRK14268 243 NPREKS 248 (258)
T ss_pred CCCCHH
Confidence 655544
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=384.34 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=190.5
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.++++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CcccHHHhcCcCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1299 IIPQDPML-FQGTVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1299 iIpQdp~L-F~gTIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
++||++.+ |+.|+++|+.... ...++.+.++++.+++.++.. .++ ..||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-------~~~----~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-------RPV----TSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-------CCh----hhCCHHHHHHHH
Confidence 99999987 6779999995321 112446889999999876543 333 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||||+++|+||+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999865 47899999999999965 999999999999999999999864
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=383.64 Aligned_cols=216 Identities=23% Similarity=0.349 Sum_probs=188.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876653 57899
Q ss_pred EEccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||++.+|.. |+++|+... ...+ ++++.++++.+++.++..+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 999999642 1122 345778888888876544333 4699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987643 7899999999998865 999999999999999999999987765
Q ss_pred hH
Q 000475 1448 SF 1449 (1470)
Q Consensus 1448 ~f 1449 (1470)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 55
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=358.79 Aligned_cols=208 Identities=26% Similarity=0.410 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EccCCCCCcc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.++.+ |+++|+... ... .++++.++++.+++.+.... ++ .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-------LV----KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-------Ch----hhCCHHHHHHHHHHHHH
Confidence 9999998876 999999531 111 23457788898888765433 23 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
+.+|++|+|||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987642 6899999999999876 999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=370.24 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 349999999999999999999999999999999999999999999999999988788889999999
Q ss_pred EccCC--CCCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1300 IPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1300 IpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
+||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 478889999996311 223 335778888888876654433 3699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999987643 7899999999999964 999999999999999999999764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=366.47 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=188.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999864 3455
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC---CC-----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~---~~-----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.+++++.. +..++. ...+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~----~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDR----NAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhcc----ChhhCCHHHHH
Confidence 6788999999999999999999997421 11 124566777777774321 122333 44679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++||||++++|++|+|||||++||+++...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987677999999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
.++.-.|
T Consensus 235 ~~~~~~~ 241 (251)
T PRK14251 235 IAPKKQI 241 (251)
T ss_pred hCCCCHH
Confidence 6554434
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=381.50 Aligned_cols=218 Identities=22% Similarity=0.405 Sum_probs=191.3
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEEcCEeCCCCCHHHHh
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG--GRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~--G~I~IDG~dI~~i~l~~LR 1294 (1470)
.|.|+++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 468999999999964 359999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cccEEEccCCCCCcc-cHHHhcCc-C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1295 SRLSIIPQDPMLFQG-TVRTNLDP-L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~g-TIR~NLdp-~--~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
+++++++|++.+|.. |+++|+.. . ...+ ++++.++++.++|.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999977 99999963 2 1223 234667788888876654444 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS---RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~---~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987543 6899999999999866 9999999999999999999999
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8876665
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=380.64 Aligned_cols=217 Identities=23% Similarity=0.420 Sum_probs=192.4
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..++++|++++|.. ..+|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3589999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCCCCcc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
++++|++.+|.. ||++|+... . ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999632 1 222 345678888899887766555 369999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~ 1446 (1470)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||+|++|++|++++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988653 7899999999999865 99999999999999999999998877
Q ss_pred ChH
Q 000475 1447 SSF 1449 (1470)
Q Consensus 1447 s~f 1449 (1470)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 655
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=360.56 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH----H
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----L 1293 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~----L 1293 (1470)
|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996531 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEccCCCCCcc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1294 RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1294 R~~isiIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 6789999999999987 999998642 111 13456777887777554332 2357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKV 1432 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~v 1432 (1470)
+|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998654 7999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=364.96 Aligned_cols=224 Identities=25% Similarity=0.442 Sum_probs=190.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 3599999999999999999999999999999999999974 899999999998753 345
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678999999999999999999999632 111 23346777888887654422 123445679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987778999999999998765 9999999999999999999998
Q ss_pred hcCCChHHH
Q 000475 1443 EDNSSSFSK 1451 (1470)
Q Consensus 1443 ~~~~s~f~~ 1451 (1470)
+++...|.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 765444443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=372.92 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=183.8
Q ss_pred EEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC----CCHHH
Q 000475 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1292 (1470)
|+++|++++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 359999999999999999999999999999999999999999999999999963 34667
Q ss_pred HhcccEEEccCC--CCCcccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1293 LRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1293 LR~~isiIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.|++++|+||+| .+|+.|+++|+... ...+.+ .+.++++.++|.+.+ .+. ....|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~----~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LAR----SPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hhC----CcccCCHHHHH
Confidence 889999999998 68888999999632 112332 456677777774221 122 33579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999865 99999999999999999999
Q ss_pred Hhhc
Q 000475 1441 LLED 1444 (1470)
Q Consensus 1441 Ll~~ 1444 (1470)
+.++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.74 Aligned_cols=217 Identities=23% Similarity=0.411 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC----------
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---------- 1289 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---------- 1289 (1470)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---HHHHhcccEEEccCCCCCc-ccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000475 1290 ---LQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1357 (1470)
Q Consensus 1290 ---l~~LR~~isiIpQdp~LF~-gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1357 (1470)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+..... ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2467889999999998885 6999999631 111 234567788888876654433 3569
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000475 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1358 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE 1434 (1470)
|+|||||++|||||+++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999965 99999999999999
Q ss_pred ecChhHHhhcCCChH
Q 000475 1435 YDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~f 1449 (1470)
.|+++++.+++...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999987654334
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=373.28 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC--------
Q 000475 1219 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM-------- 1287 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~-------- 1287 (1470)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996532 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhcccEEEccCC--CCCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcH-HHHHh
Q 000475 1288 ----------------IGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLA-EIVRQ 1341 (1470)
Q Consensus 1288 ----------------i~l~~LR~~isiIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~-~~v~~ 1341 (1470)
.....+|++++|+||+| .+|..|+++|+.... ..+ ++++.++++.++|. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467889999999986 688889999996321 223 33467778888774 3322
Q ss_pred cccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000475 1342 DQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID 1420 (1470)
Q Consensus 1342 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~ 1420 (1470)
....+||||||||++|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2335799999999999999999999999999999999999999999998753 47999999999998755
Q ss_pred -cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1421 -NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1421 -~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||||++|++|++++.|+|+++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=355.67 Aligned_cols=198 Identities=26% Similarity=0.410 Sum_probs=173.4
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEE
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1300 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiI 1300 (1470)
+++|++++|+.+ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999999864 4577899999
Q ss_pred ccCC--CCCcccHHHhcCcCC---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1301 PQDP--MLFQGTVRTNLDPLE---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1301 pQdp--~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
||+| .+|..|+++|+.... ...++++.++++.+++.++....| ..||||||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999997431 123457889999999876644333 369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1433 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv 1433 (1470)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 357899999999999976 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=365.39 Aligned_cols=220 Identities=25% Similarity=0.407 Sum_probs=187.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... ...
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 359999999999999999999999999999999999953 6 499999999999753 345
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC----CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|+.|+++|+... +.. .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 111 23456677888887554332 123344679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|++|||||||++||+++...+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999865 9999999999999999999998
Q ss_pred hcCCC
Q 000475 1443 EDNSS 1447 (1470)
Q Consensus 1443 ~~~~s 1447 (1470)
+++..
T Consensus 236 ~~~~~ 240 (252)
T PRK14239 236 MNPKH 240 (252)
T ss_pred hCCCC
Confidence 76543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=325.87 Aligned_cols=211 Identities=28% Similarity=0.429 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|.+++|.++|.. .| -..+++|++||+|||+|+||||||||++++.|+..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999963 33 357899999999999999999999999999999999999999999999876654 578999
Q ss_pred EccCCCCCcc-cHHHhcCcC----C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL----E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~----~---~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+.||.-||.. ||++|+... - ....+.+.+++.++||.++..++|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999987 999998642 2 2335568999999999999999985 5899999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++++|||++.|+.+++++.+++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 99999999999999999999999988887654 57899999999999876 999999999999999999999976543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.26 Aligned_cols=222 Identities=21% Similarity=0.381 Sum_probs=188.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 359999999999999999999999999999999999987 3 58999999999864 4456
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|.+|+++|+... +..++ +++.++++..++.+.+.. .++ ....+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~l~----~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD---RLH----TQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---hhh----CCcccCCHHHHH
Confidence 788999999999999999999999532 11122 235566777777654321 123 345679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|+||+|||||++||+++...+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987778999999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
+++...+
T Consensus 243 ~~~~~~~ 249 (259)
T PRK14274 243 SNPDDQR 249 (259)
T ss_pred hCCCCHH
Confidence 7655443
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.50 Aligned_cols=215 Identities=23% Similarity=0.412 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCC-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1219 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--CCCcccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|+||+| .++..|+.+|+... ...+++ ++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 47788999999632 123333 356788888887654332 246999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987653 7899999999999988999999999999999999998864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=347.35 Aligned_cols=221 Identities=27% Similarity=0.400 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.+++++++.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999976 4699999999999999999999999999999999999999999999999988443 45799
Q ss_pred EEccCCCCCcc-cHHHhcCcC-CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL-EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~-~~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
||+|++.||.- ||++|+... .. -..+.+.+.|+++||.+|-...|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999998 999998632 11 124468899999999999877774 589999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeC--CEE---EEecChhHHh
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDE--GKV---LEYDSPRQLL 1442 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~--G~v---vE~g~p~~Ll 1442 (1470)
|+.+|+||+||||.++||..|...+|+-+.+.- .++||++|||+++.... +|||+||.+ |+| ++.+-|..-
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999887643 46999999999998655 999999999 545 333332111
Q ss_pred hcCCChHHHHHHHHHh
Q 000475 1443 EDNSSSFSKLVAEFLR 1458 (1470)
Q Consensus 1443 ~~~~s~f~~lv~~~~~ 1458 (1470)
...+..|..+.++-+.
T Consensus 224 ~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 IRGDPEFLELREELLE 239 (248)
T ss_pred cccChHHHHHHHHHHH
Confidence 2345568777766654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.25 Aligned_cols=223 Identities=24% Similarity=0.430 Sum_probs=192.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 359999999999999999999999999999999999875 389999999999975 3466
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC-C--C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL-E--Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~-~--~-~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
++|++++|+||+|.+|.+|+++|+... . . .+ ++++.++++.+++.+.+... +| ..+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LD----KSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---Hh----CCcccCCHHHHH
Confidence 789999999999999999999999732 1 1 12 23467788889987765432 33 345679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|+||||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999877 8999999999999999999998
Q ss_pred hcCCChHH
Q 000475 1443 EDNSSSFS 1450 (1470)
Q Consensus 1443 ~~~~s~f~ 1450 (1470)
+.+.+.+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14266 234 INPKDKRT 241 (250)
T ss_pred hCCCChHH
Confidence 77666553
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=363.56 Aligned_cols=224 Identities=24% Similarity=0.430 Sum_probs=191.1
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCEeCCCC--C
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISMI--G 1289 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~i--~ 1289 (1470)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 359999999999999999999999999999999999986 4 689999999999753 3
Q ss_pred HHHHhcccEEEccCCCCCc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000475 1290 LQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360 (1470)
Q Consensus 1290 l~~LR~~isiIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgG 1360 (1470)
...+|++++|+||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+..+ ++ ..+.+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~----~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR---LK----SNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH---hh----CCcCcCCHH
Confidence 4568899999999999998 5999999631 1112 24467778888876544321 12 345679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000475 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1439 (1470)
Q Consensus 1361 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~ 1439 (1470)
||||++||||++++|++|+|||||++||+.+...+.+.|++..++.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHhhcCCChH
Q 000475 1440 QLLEDNSSSF 1449 (1470)
Q Consensus 1440 ~Ll~~~~s~f 1449 (1470)
++..++...+
T Consensus 233 ~~~~~~~~~~ 242 (252)
T PRK14256 233 KIFTTPEKKQ 242 (252)
T ss_pred HHHhCCCcHH
Confidence 9987655444
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=368.14 Aligned_cols=213 Identities=27% Similarity=0.431 Sum_probs=186.0
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC-HHHHhcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDLRSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~~is 1298 (1470)
++++|++++|+++ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999643 35999999999999999999999999999999999999999999999999998765 467889999
Q ss_pred EEccCCC--CCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1299 IIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1299 iIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
++||+|. ++..|+++|+.... ..+ ++++.++++.+++.++.... ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999996421 122 34567778888886654332 2469999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||+++|+||+|||||++||+.+...+.+.|++.. +++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998754 47999999999999988999999999999999999998754
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=364.78 Aligned_cols=221 Identities=25% Similarity=0.354 Sum_probs=195.7
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.|+++|++++|+.. ..+.+++ ||+|++||+++|+|+||||||||+++|.|+++ .+|++ .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 48899999999743 2457899 99999999999999999999999999999998 78986 7776
Q ss_pred ----EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1470)
.++||||+|+++++|+++|+....+.+.++..++++.+++...+..+|++.++.+++.|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999964444667788889999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhchhHHH
Q 000475 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1470)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 815 (1470)
+.+|+|+||||||++||+++.+.+.+ .+....+++|+|+|||+++++..||+|++|++|++++.|+++++.+ ....+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 99999999999999999999776654 4555556899999999999988899999999999999999999988 455566
Q ss_pred HHHHH
Q 000475 816 RQMKA 820 (1470)
Q Consensus 816 ~~~~~ 820 (1470)
+++..
T Consensus 232 ~~~~~ 236 (275)
T cd03289 232 QAISP 236 (275)
T ss_pred HHHhh
Confidence 65543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=366.16 Aligned_cols=223 Identities=22% Similarity=0.341 Sum_probs=189.1
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHhc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~ 1295 (1470)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999963 3599999999999999999999999999999999999999999999999999876643 3578
Q ss_pred ccEEEccCCCCCcc-cHHHhcCc----CCCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDP----LEQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp----~~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
+++|+||++.+|.+ |+++|+.. ....+. +.+.++++.+++.+.. +..+ .+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-------KLMP----SELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-------hCCh----hhCCHHHHHHHH
Confidence 89999999999987 99999963 111222 3456677777775433 2222 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 37899999999999876 99999999999999999999987
Q ss_pred cCCChHHHHHH
Q 000475 1444 DNSSSFSKLVA 1454 (1470)
Q Consensus 1444 ~~~s~f~~lv~ 1454 (1470)
++......++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 55444444443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=348.93 Aligned_cols=188 Identities=32% Similarity=0.447 Sum_probs=160.0
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------E
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------~ 660 (1470)
.+++++++.+|.. ...|+| ||+|++||+++|+|||||||||||++|+|+.+|++|++ .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4788999999874 468899 99999999999999999999999999999999999997 7776 4
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCCCCC-------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHH
Q 000475 661 KAYVPQSSWIQT-GTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1470)
Q Consensus 661 ~ayv~Q~~~i~~-~Ti~eNI~~g~~~~-------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1470)
++||+|++-++. .||+|||.||.+.. +++.++.++..+|...-+ ..+.+|||||||||+||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHH
Confidence 699999987755 79999999997652 234556666677655443 44578999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEcCCcchhh-hcCEEEEEeC--CEE
Q 000475 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKD--GKI 797 (1470)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~--G~i 797 (1470)
|||..+|+++||||||+|||+.|+.++.+.+.+-+.+ ++||++||||+++.- -+|||++|.+ |+|
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999998887776655543 799999999999865 5999999998 445
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=363.09 Aligned_cols=211 Identities=25% Similarity=0.364 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH-hcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~is 1298 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.+++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 359999999999999999999999999999999999999999999999999988876654 56799
Q ss_pred EEccCCCCCcc-cHHHhcCcCCC------------C---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLEQ------------H---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~~~------------~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
++||++.+|.+ |+++|++.... . .++++.++++..++.+.. + ....+||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-------D----RLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-------c----CChhhCCHHHH
Confidence 99999999987 99999964211 0 233466677776664332 2 33457999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
||++||||++++|++|+|||||++||+++...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987677999999999999976 999999999999999999998
Q ss_pred hh
Q 000475 1442 LE 1443 (1470)
Q Consensus 1442 l~ 1443 (1470)
.+
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 74
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=356.55 Aligned_cols=202 Identities=30% Similarity=0.438 Sum_probs=178.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++++|+||++++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999964 35999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.++. |+.+ .+||+|||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KKKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hCch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1122 34577888888887653 3333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987777999999999999975 9999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.38 Aligned_cols=223 Identities=25% Similarity=0.408 Sum_probs=189.9
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1290 (1470)
|.|+++||+++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3599999999999999999999999999999999999863 69999999999975 455
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
..+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67899999999999999999999996321 1 1 23456677777777544321 12234467999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999998866 999999999999999999999
Q ss_pred hhcCCChH
Q 000475 1442 LEDNSSSF 1449 (1470)
Q Consensus 1442 l~~~~s~f 1449 (1470)
..++...+
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14240 233 FTNPKDKR 240 (250)
T ss_pred HhCCCChH
Confidence 86654433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=354.67 Aligned_cols=202 Identities=23% Similarity=0.381 Sum_probs=178.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++... .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 3699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EccCCCCC-cccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1300 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1300 IpQdp~LF-~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
+||++.+| +.|+++|+... ...+++++.++++..++.+..... ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 46999999642 123567788899999987765432 2469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
++|+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998754 47899999999999876 9999999999998865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.18 Aligned_cols=222 Identities=24% Similarity=0.397 Sum_probs=190.1
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1290 (1470)
+.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
..+|++++++||+|.+|+.|+++|+... +... ++.+.++++.+++.+.+... ++ ..+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LN----KSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hc----CCcccCCHHHH
Confidence 6788999999999999999999999632 1112 23456788888886554322 23 34467999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe-----CCEEEEec
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD-----EGKVLEYD 1436 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~-----~G~vvE~g 1436 (1470)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987777999999999999976 99999998 59999999
Q ss_pred ChhHHhhcCCCh
Q 000475 1437 SPRQLLEDNSSS 1448 (1470)
Q Consensus 1437 ~p~~Ll~~~~s~ 1448 (1470)
++.++++++...
T Consensus 237 ~~~~~~~~~~~~ 248 (259)
T PRK14260 237 VTTQIFSNPLDS 248 (259)
T ss_pred CHHHHhcCCCCh
Confidence 999998765443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=362.23 Aligned_cols=219 Identities=26% Similarity=0.425 Sum_probs=188.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~ 1291 (1470)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 35999999999999999999999999999999999999987 69999999998753 456
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC---C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~---~-~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|.+|+++|+.... . .. ++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7899999999999999999999996421 1 11 2345566777777654432 233456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999977 7999999999999999999998
Q ss_pred hcCC
Q 000475 1443 EDNS 1446 (1470)
Q Consensus 1443 ~~~~ 1446 (1470)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=343.91 Aligned_cols=210 Identities=27% Similarity=0.381 Sum_probs=174.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
|+++|+++.|.+ ...+++ ||+|++||+++++||+||||||+|++|.++++|++|++ .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999974 356778 99999999999999999999999999999999999996 8877
Q ss_pred ---EeEEEcCCCCCC-CccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHH
Q 000475 660 ---KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1470)
Q Consensus 660 ---~~ayv~Q~~~i~-~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 728 (1470)
++|||-|+.-+| +.||.|||.+-.. +++ ++.++.++..+|+.. ......+..|||||+||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQR 143 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQR 143 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhH
Confidence 369999998775 6799999997532 333 344555666666531 01235577999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhhH
Q 000475 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l 806 (1470)
|.+||||..+|+|+|+||||+||||-++.++-++...-.. -++|+|+||||+++. ..+|+|.+|++|+|++.++++++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999888665543222 289999999999985 56999999999999999999999
Q ss_pred HhhchhHHHHHH
Q 000475 807 IADQNSELVRQM 818 (1470)
Q Consensus 807 ~~~~~~~~~~~~ 818 (1470)
+.++..+|.+..
T Consensus 224 l~~Pan~FV~~f 235 (309)
T COG1125 224 LANPANDFVEDF 235 (309)
T ss_pred HhCccHHHHHHH
Confidence 987777776543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=368.52 Aligned_cols=215 Identities=25% Similarity=0.419 Sum_probs=188.9
Q ss_pred cEEEEeEEEEeCCC----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC-HHHH
Q 000475 1219 KIELENLLVQYNPT----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG-LQDL 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~----~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~L 1293 (1470)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 4568
Q ss_pred hcccEEEccCCC--CCcccHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1294 RSRLSIIPQDPM--LFQGTVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1294 R~~isiIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
|++++|+||+|. +|..|+++|+.... ..+ ++++.++++.+++.++..+.| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67678999996421 122 456788899999987665443 4699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+++|+++.+..||+|++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999864 379999999999999889999999999999999999987
Q ss_pred hc
Q 000475 1443 ED 1444 (1470)
Q Consensus 1443 ~~ 1444 (1470)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=361.80 Aligned_cols=479 Identities=20% Similarity=0.186 Sum_probs=321.3
Q ss_pred chhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChh------hHHHHHhhchhhhhcch
Q 000475 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS------RILNRCSTDQSTVDTDI 1001 (1470)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G------~ilnR~s~D~~~id~~l 1001 (1470)
..+.+|..++++.......+.++......+.-..+-..++++-+... .||-....| ..=.|+..|+...-..-
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 45677888888888888888888888888888888888888887766 444333332 23356777776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 000475 1002 PYRLAGLAFALIQLLSIIILMSQAAWQVFP------LFLVILGIS-IWYQVVNTARCHYLLQAYYITTARELARMVGTRK 1074 (1470)
Q Consensus 1002 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~------~~ip~~~~~-~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~ 1074 (1470)
-....+++.++++++...+++.-.+-.+.+ +.+|-..+. ..+.++.......++.+...+-.-+-.+.|+.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 444445555555555444443311111100 011111100 0000000000111222444444445555565555
Q ss_pred chhHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCcC
Q 000475 1075 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAID 1153 (1470)
Q Consensus 1075 sp~~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~~~~~~~~~~ 1153 (1470)
..+. -.-+....|-.|+-|+.-.++..+..+.-.+.+......+.++...-...+-+.+.+- .+.+-....|.++
T Consensus 246 ~~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~ 321 (604)
T COG4178 246 YSLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQIT 321 (604)
T ss_pred HHHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcCh
Confidence 4433 2344566777787776665555555554444444333333333333222222221111 1111123456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc------CCCCCccccCCCCCCCCCCCCCcEEEEeEEE
Q 000475 1154 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN------IPSEAPLVIKNSRPSPEWPSSGKIELENLLV 1227 (1470)
Q Consensus 1154 ~~~~gl~l~y~l~l~~~~~~~i~~~~~le~~~~sveRi~~~~~------~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~ 1227 (1470)
-|-...+.+-..++...+.|++..+..+.+-.....|+.++.+ .+.+.+.... .+-...-.....|+++|+++
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 7777777777888889999999999999999999999999874 1222111100 00000000146899999999
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCC
Q 000475 1228 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307 (1470)
Q Consensus 1228 ~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF 1307 (1470)
.-+++. ..+++++|++++||.+-|.|+||||||||+++|.|+.+--+|+|.+-. -+++-++||.|.+-
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987665 689999999999999999999999999999999999999999987641 13588999999999
Q ss_pred cccHHHhcC-cCC--CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000475 1308 QGTVRTNLD-PLE--QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384 (1470)
Q Consensus 1308 ~gTIR~NLd-p~~--~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaT 1384 (1470)
.||+|+-|. |.. .++|+|+.++|.+|||.+++.++.+- +. =..-||+||||||++||.||+||++++|||||
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 999999996 543 38999999999999999999987432 22 23469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeC
Q 000475 1385 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1385 sslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1429 (1470)
|+||++++..+.+.++++..++|||.|+||.....-.++.+-+++
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999999999777666666665543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=367.81 Aligned_cols=215 Identities=24% Similarity=0.423 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCC--CCcccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1299 IIPQDPM--LFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1299 iIpQdp~--LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
|+||+|. ++..|+++|+... .... ++++.++++..++.++.. . ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-------Y----EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-------C----CcccCCHHHHHHHHHHH
Confidence 9999994 4455899998532 1112 345667788887765432 2 23579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998643 7899999999999988999999999999999999998764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=365.64 Aligned_cols=221 Identities=25% Similarity=0.441 Sum_probs=187.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999964 359999999999999999999999999999999999865 789999999999975 3445
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC----CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL----EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|.+|+++|+... .. ..++.+.++++.+++.+.+.. .......+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678999999999999999999998632 11 113446777877777432211 122345679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998865 9999999999999999999998
Q ss_pred hcCCCh
Q 000475 1443 EDNSSS 1448 (1470)
Q Consensus 1443 ~~~~s~ 1448 (1470)
+++...
T Consensus 252 ~~~~~~ 257 (268)
T PRK14248 252 TSPKQQ 257 (268)
T ss_pred hCCCCh
Confidence 765433
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=373.87 Aligned_cols=227 Identities=20% Similarity=0.350 Sum_probs=188.1
Q ss_pred cEEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEEcCEeCCCCCHHH
Q 000475 1219 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE----PSGGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1292 (1470)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996532 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEccCCC--CCcc-cHHHhc----CcCCCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000475 1293 LRS----RLSIIPQDPM--LFQG-TVRTNL----DPLEQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1357 (1470)
Q Consensus 1293 LR~----~isiIpQdp~--LF~g-TIR~NL----dp~~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1357 (1470)
+|+ ++++|||+|. ++.. |+.+|+ ...... .++++.++|++++|.+.... ++ .....|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----l~----~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR----LD----VYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hh----CCchhC
Confidence 553 6999999995 4432 565544 322111 23457788898888542211 12 334579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhh-hcCEEEEEeCCEEEE
Q 000475 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVI-DNDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1358 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~-~~DrIlvL~~G~vvE 1434 (1470)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 3789999999999985 499999999999999
Q ss_pred ecChhHHhhcCCChHHHHH
Q 000475 1435 YDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~f~~lv 1453 (1470)
.|+++++++++...|.+..
T Consensus 235 ~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhCCCChHHHHH
Confidence 9999999988776676543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=354.96 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=187.4
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH----HHHhcc
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSR 1296 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~~ 1296 (1470)
.+.|+.++|+++ .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999765 459999999999999999999999999999999999999999999999998876542 345778
Q ss_pred cEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1297 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1297 isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
++|+||+|.+|+.|+++|+.....+++++..++++.+++.+.+..+|.|+++.......+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998654456777788999999999999899999998888889999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000475 1377 ILVLDEATASIDTATDNVIQQ--TIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGK 1431 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~--~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1431 (1470)
||+|||||++||+.+.+.+.+ .++... .+.|+|++||+.+.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999888776 444432 3689999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.31 Aligned_cols=211 Identities=27% Similarity=0.480 Sum_probs=181.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-HhcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~is 1298 (1470)
|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 35999999999999999999999999999999999999999999999999998877665 457899
Q ss_pred EEccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||+|.+|.+ |+++|+... .... ++++.+.++..++.+.. .....+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999632 1122 22345566666654332 23345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++++|++|+|||||++||+++.+.+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998764 47899999999988766 99999999999999999998875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=356.14 Aligned_cols=203 Identities=27% Similarity=0.424 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---Hh
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1294 (1470)
|+++||+++|++.. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 35999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cccEEEccCCCCCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1295 -SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1295 -~~isiIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
++++|+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 68999999999986 5999999641 1222 2346677777777554332 2356999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEE
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVL 1433 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~vv 1433 (1470)
+|||||+++|+||+|||||++||+++...+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=366.25 Aligned_cols=212 Identities=27% Similarity=0.405 Sum_probs=187.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5899999999963 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCCcc-cHHHhcCcCC-----------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLE-----------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+..... + .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-------V----DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-------c----ccCCHHHHHHHH
Confidence 99999877665 9999996310 11245678899999887654333 2 369999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998764 37999999999999965 99999999999999999999875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=365.23 Aligned_cols=221 Identities=25% Similarity=0.408 Sum_probs=191.0
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--CC
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IG 1289 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~ 1289 (1470)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999964 3599999999999999999999999999999999999884 89999999999975 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHhcCcC---CC-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000475 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1290 l~~LR~~isiIpQdp~LF~gTIR~NLdp~---~~-~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999632 11 11 2447778888887654432 2234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
|||++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987778999999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000475 1441 LLEDNS 1446 (1470)
Q Consensus 1441 Ll~~~~ 1446 (1470)
+.+++.
T Consensus 254 ~~~~~~ 259 (272)
T PRK14236 254 LFTSPA 259 (272)
T ss_pred HhcCCC
Confidence 986543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=356.18 Aligned_cols=200 Identities=31% Similarity=0.463 Sum_probs=173.5
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEE
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1300 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiI 1300 (1470)
+++|++++|+.+...+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975324699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCC--CCCcccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1301 PQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1301 pQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
||+| .++..|+++|+... ...+ ++++.++++..++.+.... ....||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 2346667777777654432 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1431 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1431 (1470)
+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998764 47899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=364.06 Aligned_cols=221 Identities=25% Similarity=0.379 Sum_probs=185.3
Q ss_pred EEEEeEEEEeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH
Q 000475 1220 IELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~-------~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~ 1292 (1470)
|+++||+++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcccEEEccCCC--CC-cccHHHhcCc-C---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000475 1293 ---LRSRLSIIPQDPM--LF-QGTVRTNLDP-L---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1293 ---LR~~isiIpQdp~--LF-~gTIR~NLdp-~---~~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
+|++++|+||+|. ++ ..|+++|+.. . .. ..++++.++++..++.+.. +| ..+.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~----~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------AD----KLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------hh----CChhhCC
Confidence 6788999999983 44 3699999842 1 11 1234566777777764211 12 2345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
||||||++|||||+++|+||+|||||++||+++...+.+.|++..+ ++|||+|+|+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCChHHH
Q 000475 1436 DSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1436 g~p~~Ll~~~~s~f~~ 1451 (1470)
|+++++++. ...|.+
T Consensus 233 g~~~~~~~~-~~~~~~ 247 (265)
T TIGR02769 233 CDVAQLLSF-KHPAGR 247 (265)
T ss_pred CCHHHHcCC-CCHHHH
Confidence 999999874 344443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=359.78 Aligned_cols=213 Identities=25% Similarity=0.402 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC--HHHHhccc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1297 (1470)
++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 45999999999999999999999999999999999999999999999999998643 35678899
Q ss_pred EEEccCCCCCc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|+||++.+|. .|+++|+... ...+ ++++.++++..++.+.... ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998886 5999999632 1112 2345667777776554332 2357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
||++++|++|+|||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++.++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47899999999999865 9999999999999999999988654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=352.03 Aligned_cols=210 Identities=27% Similarity=0.394 Sum_probs=174.5
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
|+++++++.|.... ......+++ ||+|++||+.||+|.+|+|||||++++.++-.|++|++ .++|
T Consensus 2 I~l~~vsK~~~~~~---~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTG---TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCC---CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 78999999998630 123467888 99999999999999999999999999999999999997 7887
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCCC----CHHHHHHHHH---HhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYEEVLE---GCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~~----~~~~y~~v~~---~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
+||+++|++-+++ .||.+||.|..+. .++..++|.+ ..+|.+. .+..+.+|||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQ 146 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQ 146 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcch
Confidence 3699999998876 7999999997643 2334444444 3344432 235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
||||+|||||..+|+|+|.|||||||||+|.+.|.+- ++... -|-|+++|||.++.++. ||||.||++|++++.|+
T Consensus 147 KQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L-L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 147 KQRVAIARALANNPKILLCDEATSALDPETTQSILEL-LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred hhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc
Confidence 9999999999999999999999999999999999874 43332 37899999999999987 99999999999999999
Q ss_pred hhhHHhhchhHHHH
Q 000475 803 YEDLIADQNSELVR 816 (1470)
Q Consensus 803 ~~~l~~~~~~~~~~ 816 (1470)
..+++.++..+..+
T Consensus 226 v~~vF~~Pk~~~t~ 239 (339)
T COG1135 226 VSEVFANPKHAITQ 239 (339)
T ss_pred HHHhhcCcchHHHH
Confidence 99998766555443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=369.30 Aligned_cols=223 Identities=24% Similarity=0.416 Sum_probs=198.7
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++||+.+|+ ...+++|+|++|++||.+.++|||||||||++++|.|+..|++|+|.+||.||..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 35699999999999999999999999999999999999999999999999999998877 6899
Q ss_pred EEEccCCCCCcc-cHHHhcCcC-C---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPL-E---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~-~---~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
++|+|+..||+. ||++|+... . ...+ +.+.++|+.++|.++-.+.|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999987 999998642 2 1232 367899999999998877764 5899999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
|||..+|++|+||||-|+||..-...+|.-+++.. .+.|.|.|||+-..... +|||.||++|+|...|+|+|+..+|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999998887643 47899999999887654 9999999999999999999999999
Q ss_pred CChHHHHHHHHHh
Q 000475 1446 SSSFSKLVAEFLR 1458 (1470)
Q Consensus 1446 ~s~f~~lv~~~~~ 1458 (1470)
.+.| |+++-.
T Consensus 229 ~~~f---VA~FiG 238 (352)
T COG3842 229 ATRF---VADFIG 238 (352)
T ss_pred chHH---HHHHhC
Confidence 8877 455443
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=363.50 Aligned_cols=225 Identities=23% Similarity=0.390 Sum_probs=189.1
Q ss_pred CCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--
Q 000475 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM-- 1287 (1470)
Q Consensus 1215 p~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~-- 1287 (1470)
|..-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 20 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred CCceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 33346999999999964 359999999999999999999999999999999999987 699999999999853
Q ss_pred CCHHHHhcccEEEccCCCCCcccHHHhcCcC---CCCC-----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000475 1288 IGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHS-----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1359 (1470)
Q Consensus 1288 i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~---~~~s-----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSg 1359 (1470)
.+...+|++++|+||+|.+|..|+++|+... ...+ ++.+.++++..++.+.+. ......+.+|||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSg 170 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSG 170 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCH
Confidence 3556788999999999999999999999631 1222 223455566665533222 222345568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000475 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1360 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p 1438 (1470)
|||||++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778999999999999876 999999999999999999
Q ss_pred hHHhhcCCCh
Q 000475 1439 RQLLEDNSSS 1448 (1470)
Q Consensus 1439 ~~Ll~~~~s~ 1448 (1470)
.++.+++...
T Consensus 251 ~~~~~~~~~~ 260 (271)
T PRK14238 251 DKIFSNPSDK 260 (271)
T ss_pred HHHHcCCCCH
Confidence 9998765433
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=360.94 Aligned_cols=219 Identities=24% Similarity=0.392 Sum_probs=188.5
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 3599999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC---CC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~---~~-s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|..|+++|+.... .. + ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6789999999999999999999996321 11 1 23466788888875443321 22345679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++||||++++|+||+|||||++||+.+...+.+.|++..++.|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987767899999999999876 9999999999999999999998
Q ss_pred hcCC
Q 000475 1443 EDNS 1446 (1470)
Q Consensus 1443 ~~~~ 1446 (1470)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14270 235 LEPQ 238 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=360.21 Aligned_cols=212 Identities=25% Similarity=0.345 Sum_probs=181.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCC------CCCHHHH
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS------MIGLQDL 1293 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~------~i~l~~L 1293 (1470)
++++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 35999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hcccEEEccCCCCCcc-cHHHhcCc--C--CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1294 RSRLSIIPQDPMLFQG-TVRTNLDP--L--EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1294 R~~isiIpQdp~LF~g-TIR~NLdp--~--~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
|++++|+||+|.+|.+ |+++|+.. . .... .+++.+.++..++.++.... ..+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHH
Confidence 8899999999999976 99999952 1 1122 23456667777765544333 34799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
++||||++++|++|+|||||++||+++...+.+.|++.. +++|+|+++|+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999998764 47999999999999976 9999999999999999999876
Q ss_pred hc
Q 000475 1443 ED 1444 (1470)
Q Consensus 1443 ~~ 1444 (1470)
+.
T Consensus 230 ~~ 231 (242)
T PRK11124 230 QP 231 (242)
T ss_pred Cc
Confidence 53
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=362.74 Aligned_cols=220 Identities=21% Similarity=0.408 Sum_probs=189.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 359999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC---CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~---~~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
.+|++++++||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7899999999999999889999996421 11 234566678888887655321 2334567999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe---------CCEEEEe
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD---------EGKVLEY 1435 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~---------~G~vvE~ 1435 (1470)
+|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987777899999999999866 99999998 8999999
Q ss_pred cChhHHhhcCCC
Q 000475 1436 DSPRQLLEDNSS 1447 (1470)
Q Consensus 1436 g~p~~Ll~~~~s 1447 (1470)
|+++++.+++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=363.27 Aligned_cols=211 Identities=27% Similarity=0.453 Sum_probs=186.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcc-cHHHhcCcC--------CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL--------EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~--------~~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
+||++.++.+ |+++|++.. +. ..++++.++++.+++.+... +. ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-------RR----LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-------CC----cccCCHHHHHHHHH
Confidence 9999998877 999999742 11 12345778888888865433 22 35699999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||++++|++|+|||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998764 47899999999999875 99999999999999999999875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=364.04 Aligned_cols=224 Identities=22% Similarity=0.375 Sum_probs=192.7
Q ss_pred CCCCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCC---
Q 000475 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS--- 1286 (1470)
Q Consensus 1215 p~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~--- 1286 (1470)
|..+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 56788999999999964 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCCHHHHhcccEEEccCCCCCcccHHHhcCcCC--------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000475 1287 -MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE--------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1357 (1470)
Q Consensus 1287 -~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~--------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1357 (1470)
....+.+|++++|+||+|.+|.+|+++|+.... ...++++.++++.+++.+.+.. .......+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKD-------RLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhH-------HHhCCcccC
Confidence 234567899999999999999999999996321 1224567888888887643322 223345679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1358 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
|+|||||++|||||+++|++++|||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987767899999999999975 9999999999999999
Q ss_pred ChhHHhhcCCC
Q 000475 1437 SPRQLLEDNSS 1447 (1470)
Q Consensus 1437 ~p~~Ll~~~~s 1447 (1470)
+++++..++..
T Consensus 243 ~~~~~~~~~~~ 253 (265)
T PRK14252 243 ATDTIFIKPKN 253 (265)
T ss_pred CHHHHHhCCCC
Confidence 99999865433
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=357.02 Aligned_cols=203 Identities=25% Similarity=0.326 Sum_probs=176.0
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999863 47889
Q ss_pred EEEccCCCCCc-ccHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+|+||+|.+|. .|+++|+... ... .++++.++++..++.+.....+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 6999998632 111 2356778888888876554433 469999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEe--CCEEEEecCh
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD--EGKVLEYDSP 1438 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~--~G~vvE~g~p 1438 (1470)
||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998763 37899999999998865 99999999 7999998763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=365.08 Aligned_cols=221 Identities=24% Similarity=0.442 Sum_probs=189.3
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1290 (1470)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35899999999964 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC---CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~---~~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
..+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+.. .++ ....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~---~~~----~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD---QLD----SSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH---HHh----CCcccCCHHHHHH
Confidence 6788999999999999989999999632 11 124567888888887544322 122 3346799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEE-EEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVL-VLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIl-vL~~G~vvE~g~p~~Ll 1442 (1470)
++|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+++|+++.+.. |||++ +|++|+|++.|++.++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988777899999999999876 99975 57999999999999998
Q ss_pred hcCCC
Q 000475 1443 EDNSS 1447 (1470)
Q Consensus 1443 ~~~~s 1447 (1470)
+++..
T Consensus 269 ~~~~~ 273 (285)
T PRK14254 269 ENPES 273 (285)
T ss_pred hCcCC
Confidence 76543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.14 Aligned_cols=202 Identities=22% Similarity=0.398 Sum_probs=175.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 578999
Q ss_pred EccCCCCCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| ..||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999885 5999999642 1122 334667788888876543332 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+++|++|+|||||++||+++...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37999999999999876 9999999999999886
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=355.24 Aligned_cols=201 Identities=26% Similarity=0.372 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH---HHHhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1296 (1470)
|+++|++++|+.+ +.+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999987754 347889
Q ss_pred cEEEccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
++++||+|.+|.. |+++|+... ...+ ++++.++++.+++.+.....| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999632 1122 345778888888866543332 46999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~v 1432 (1470)
|||+++|+|++|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 57999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=379.59 Aligned_cols=204 Identities=25% Similarity=0.432 Sum_probs=179.1
Q ss_pred cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH----hcccEEEccCCCCCcc-
Q 000475 1235 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG- 1309 (1470)
Q Consensus 1235 ~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~isiIpQdp~LF~g- 1309 (1470)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+...+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998877654 4689999999999975
Q ss_pred cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000475 1310 TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382 (1470)
Q Consensus 1310 TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1382 (1470)
|+++|+... ...+ ++++.++++.++|.++....| .+||||||||++|||||+.+|+||+|||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999632 1122 345778889998876654443 4699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1383 ATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1383 aTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
||++||+.+...+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998764 47899999999999865 99999999999999999999988765444
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=361.37 Aligned_cols=215 Identities=26% Similarity=0.426 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC--------H
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--------L 1290 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--------l 1290 (1470)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEccCCCCCc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000475 1291 QDLRSRLSIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
..+|++++|+||+|.+|. .|+++|+... .... ++.+.++++..++.+. ......+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 467889999999999886 5999999631 1222 2335566666665432 223446799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1439 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~ 1439 (1470)
|||++|||||+++|++|+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998764 47899999999999976 9999999999999999999
Q ss_pred HHhhcCC
Q 000475 1440 QLLEDNS 1446 (1470)
Q Consensus 1440 ~Ll~~~~ 1446 (1470)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9886544
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=358.77 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=185.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999987654 3788999
Q ss_pred EccCCCCCcc-cHHHhcCcC-C------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~-~------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+... . ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999631 1 112456778888888876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
+++|++++|||||+++|+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|++.++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999987643 7999999999999876 9999999999999999999998654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=372.42 Aligned_cols=227 Identities=25% Similarity=0.385 Sum_probs=189.0
Q ss_pred cEEEEeEEEEeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEEcCEeCCCCCHHHH
Q 000475 1219 KIELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIGLQDL 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~--~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~---~G~I~IDG~dI~~i~l~~L 1293 (1470)
.++++|++++|+. +...+++||||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 2236999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEccCC--CCCcc-cHHHhcC----cCCCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000475 1294 R----SRLSIIPQDP--MLFQG-TVRTNLD----PLEQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1294 R----~~isiIpQdp--~LF~g-TIR~NLd----p~~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
| ++|+|||||| .++.. |+.+|+. .....+. +++.+.|+.+++.+ +.+ .+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------ARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hHH-HhcCCcccCC
Confidence 4 4799999999 45543 7777663 2222232 23556677666532 111 1344566899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCChHHHHH
Q 000475 1436 DSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1436 g~p~~Ll~~~~s~f~~lv 1453 (1470)
|+++++++++...|.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999998877776643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.72 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=175.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1296 (1470)
|+++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999533 4599999999999999999999999999999999999999999999999999887643 46889
Q ss_pred cEEEccCCCCCc-ccHHHhcCcC----C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF~-gTIR~NLdp~----~---~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
++|+||+|.+|. .|+++|+... + ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999998642 1 112456788899998876544333 46999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGK 1431 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1431 (1470)
|||+++|++|+|||||++||+.+...+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=357.69 Aligned_cols=212 Identities=24% Similarity=0.350 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-Hhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1297 (1470)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998887655 67889
Q ss_pred EEEccCCCCCcc-cHHHhcCcCCC-CCHH----HHHHHHHHc-CcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLEQ-HSDQ----EIWEVINKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~~-~sd~----eI~~aL~~~-~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
+++||++.+|.+ |+++|+..... .+.+ ++.++++.. ++.+ ..+. ....||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~~----~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-------RRIQ----RAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-------HHhC----chhhCCHHHHHHHHHHHH
Confidence 999999999986 99999964211 1222 233333333 1221 1222 345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++++|+||+|||||++||+++...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998754 47999999999998765 99999999999999999999975
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=360.63 Aligned_cols=224 Identities=24% Similarity=0.394 Sum_probs=190.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCC---C-C----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
+.|++++|+||+|.+|++|+++|+.... . . .++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-------RLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-------HhhcChhhCCHHHHH
Confidence 7889999999999999999999997421 1 1 13346677777777544321 234445689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++||||++.+|++++|||||++||+++.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987777999999999999975 9999999999999999999998
Q ss_pred hcCCChHHH
Q 000475 1443 EDNSSSFSK 1451 (1470)
Q Consensus 1443 ~~~~s~f~~ 1451 (1470)
+++...+.+
T Consensus 237 ~~~~~~~~~ 245 (253)
T PRK14261 237 ENPHEELTE 245 (253)
T ss_pred hCCCcHHHH
Confidence 765444443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=368.93 Aligned_cols=217 Identities=28% Similarity=0.406 Sum_probs=182.2
Q ss_pred CCcEEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC----C-
Q 000475 1217 SGKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----I- 1288 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i- 1288 (1470)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47899999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHHhcccEEEccCC--CCCcccHHHhcCcCC---CCCHHH----HHHHHHHcCcH-HHHHhcccccCccccCCCCCCC
Q 000475 1289 GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSDQE----IWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1289 ~l~~LR~~isiIpQdp--~LF~gTIR~NLdp~~---~~sd~e----I~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
+...+|++++|+||+| .+|..|+++|+.... ..+.++ +.+.++..++. ++ ++ .....||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-------~~----~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-------VK----RSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-------hc----CChhhCC
Confidence 3567889999999998 477889999996321 223322 34455555542 22 12 3345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
||||||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998764 37899999999998865 999999999999999
Q ss_pred cChhHHhhc
Q 000475 1436 DSPRQLLED 1444 (1470)
Q Consensus 1436 g~p~~Ll~~ 1444 (1470)
|++++++++
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 999988753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=363.90 Aligned_cols=213 Identities=22% Similarity=0.383 Sum_probs=188.5
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
-.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999964 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCCCc-ccHHHhcCcCC--------C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPLE--------Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~~--------~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
+|+||++.+|. .|+++|+.... . ..+++++++++..++.+... . ....||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-------Q----SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-------C----CcccCChHHHHHH
Confidence 99999998875 59999996421 1 12345788888888876532 2 2357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+||||++++|++|+|||||++||+.+...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998864 37899999999998866 9999999999999999999987
Q ss_pred h
Q 000475 1443 E 1443 (1470)
Q Consensus 1443 ~ 1443 (1470)
+
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.96 Aligned_cols=471 Identities=23% Similarity=0.265 Sum_probs=340.8
Q ss_pred chhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhchhhhhcchHHHHHH
Q 000475 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1470)
Q Consensus 928 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~vl~ap~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~ 1007 (1470)
.++-.|+++.....+...+........+...-.+++.++.++++.+|+.-+++-..++++.++++|+..|. .-...+..
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHH
Confidence 44445555555555566667777888999999999999999999999999999999999999999999998 33344566
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHhhhh
Q 000475 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAG 1087 (1470)
Q Consensus 1008 ~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~y~~~sr~l~rl~~~~~sp~~~~~~Etl~G 1087 (1470)
+.++.+-.+++.+.+++.+|+.+.+.+..+++.++.+.+.+++.+ -+..++||. ...+.++++..+.|
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~-----k~~~aare~-------ed~Lq~~y~~il~G 195 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVY-----KHMAAARET-------EDKLQNDYQTILEG 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhh-------HHHHHHHHHHHhcc
Confidence 888888899999999999999988887777777776643333222 122334442 34577899999999
Q ss_pred hHHHHhhchHHHHHHHHHHHHHH------HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHH
Q 000475 1088 ATTIRCFNQENRFLLRSHSLIDD------YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAA 1161 (1470)
Q Consensus 1088 ~~tIRaf~~e~~f~~~~~~~~d~------~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~l 1161 (1470)
.+..+..+...+........-+. ..+..........|-...+-.+..+++... +..+ -++.. .+.
T Consensus 196 ~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la------l~~~--w~st~-~a~ 266 (546)
T COG4615 196 RKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA------LSLG--WASTN-VAA 266 (546)
T ss_pred hhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhc--cchhh-HHH
Confidence 99988876544433322211111 111111112333444333222222111111 1010 01111 223
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCccee
Q 000475 1162 TYGL---NLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLK 1238 (1470)
Q Consensus 1162 ~y~l---~l~~~~~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vLk 1238 (1470)
++.+ -+...+..++..+..+-...++..||.++...|..+. -....+-|+| ..||++||.|.|.++. .-+.
T Consensus 267 tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-Fhvg 340 (546)
T COG4615 267 TIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVG 340 (546)
T ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceec
Confidence 3332 3455666677777777888889999998876333221 1222233445 4799999999998763 4578
Q ss_pred eeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcccHHHhcCcC
Q 000475 1239 GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL 1318 (1470)
Q Consensus 1239 ~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~ 1318 (1470)
.||++|+.||.|=|+|.|||||||++++|.|++.|++|+|++||.+++.-++++.|+-++-|.-|-.||+.++ -|.
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e 416 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPE 416 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998664 344
Q ss_pred CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000475 1319 EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398 (1470)
Q Consensus 1319 ~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~ 1398 (1470)
+..+.+.|..-|++..+.....-. +|-=++ -.||-|||.|+++--|+|-+.+|+++||=-|.-||.=.+...+.
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~-d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLN-DGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhccc-CCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 447777777777776655443221 211111 25899999999999999999999999999999999999988776
Q ss_pred HHHh--cCCcEEEEEecChhhhhhcCEEEEEeCCEEEEec
Q 000475 1399 IREE--TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1399 I~~~--~~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g 1436 (1470)
+-.. -.|+||+.|+|+-+--..+||++.|++|+++|.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 6432 2589999999999999999999999999999873
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=377.39 Aligned_cols=218 Identities=25% Similarity=0.434 Sum_probs=189.9
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 359999999999999999999999999999999999999999999999999987664 47799
Q ss_pred EEEccCCCCCcc-cHHHhcCcC-C--CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+|++|++.+|.. |+++|+... . ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999732 1 222 345677888888866544433 469999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~ 1446 (1470)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988777653 36899999999999765 99999999999999999999998887
Q ss_pred ChHH
Q 000475 1447 SSFS 1450 (1470)
Q Consensus 1447 s~f~ 1450 (1470)
..|.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 6653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=366.86 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC----CHHH
Q 000475 1220 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1292 (1470)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999999764 3567
Q ss_pred HhcccEEEccCC--CCCcccHHHhcCcC---CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1293 LRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1293 LR~~isiIpQdp--~LF~gTIR~NLdp~---~~~sd~e----I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
+|++++|+||+| .+|+.|+++|+... ...++++ +.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 889999999998 68889999999632 1223332 3455666666421 112234579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998764 37899999999999865 999999999999999999998
Q ss_pred hhc
Q 000475 1442 LED 1444 (1470)
Q Consensus 1442 l~~ 1444 (1470)
+++
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=366.80 Aligned_cols=215 Identities=32% Similarity=0.465 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCC---CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC----CHH
Q 000475 1219 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~---~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~ 1291 (1470)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 3599999999999999999999999999999999999999999999999999753 245
Q ss_pred HHhcccEEEccCC--CCCcccHHHhcCcC---CCCCH----HHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCChhH
Q 000475 1292 DLRSRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1292 ~LR~~isiIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
..|++++|+||+| .+|..|+++|+... ...+. +.+.++++.+++. ++. +. ...+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-------~~----~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-------SK----SPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-------hC----CcccCCHHH
Confidence 6788999999998 57888999999521 12222 2356667777764 232 22 235799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1439 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~ 1439 (1470)
|||++|||||+++|++|+|||||++||+.+...+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 47899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 000475 1440 QLLED 1444 (1470)
Q Consensus 1440 ~Ll~~ 1444 (1470)
+++++
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98753
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=356.57 Aligned_cols=210 Identities=25% Similarity=0.442 Sum_probs=184.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|.. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EccCCCCCc-ccHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||++.+|. .|+++|+... ... .++++.++++.+++.+.+.+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999985 6999999631 111 2345778888898877654433 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
+++|++++|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998643 7999999999999876 9999999999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=340.39 Aligned_cols=172 Identities=36% Similarity=0.614 Sum_probs=162.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544469999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1379 (1470)
+||+|.+|++|+++|+ ||+|||||++|||||+++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000475 1380 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432 (1470)
Q Consensus 1380 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~v 1432 (1470)
|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=357.32 Aligned_cols=204 Identities=27% Similarity=0.365 Sum_probs=179.1
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999964 35999999999999999999999999999999999999999999999998763 568899
Q ss_pred EEEccCCCCCc-ccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
+|+||+|.+|. .|+++|+... ....++++.++++..++.+.... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 5999999743 22235678888999888665432 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChh
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPR 1439 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~ 1439 (1470)
++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.++..
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998753 37999999999999865 9999999999999988754
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=361.18 Aligned_cols=223 Identities=24% Similarity=0.409 Sum_probs=190.9
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~--i~l 1290 (1470)
+.|+++|++++|+. +.+|+|+||++++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
..+|+.++++||++.+|..|+++|+... +..+ ++.+.++++.+++.+++..+ .......||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999632 1112 23467788888886655422 2334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeC-----CEEEE
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDE-----GKVLE 1434 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~-----G~vvE 1434 (1470)
||++|||||+++|+||+|||||+++|+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998742 48999999999999876 999999999 99999
Q ss_pred ecChhHHhhcCCChH
Q 000475 1435 YDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~f 1449 (1470)
.|+|+++.+++...+
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (261)
T PRK14258 237 FGLTKKIFNSPHDSR 251 (261)
T ss_pred eCCHHHHHhCCCCHH
Confidence 999999987765533
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=359.44 Aligned_cols=211 Identities=27% Similarity=0.401 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EccCCCC-CcccHHHhcCcCC--C-----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPML-FQGTVRTNLDPLE--Q-----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~L-F~gTIR~NLdp~~--~-----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||++.+ +..|+++|+.... . ..++++.++++.+++.+... .. ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-------RD----YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-------CC----cccCCHHHHHHHHHHHHH
Confidence 9999987 6779999986421 1 12345778888888865432 22 347999999999999999
Q ss_pred c------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1372 L------KKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1372 L------r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+ ++|++|+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998764 47899999999999875 9999999999999999999987
Q ss_pred h
Q 000475 1443 E 1443 (1470)
Q Consensus 1443 ~ 1443 (1470)
+
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 5
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=358.44 Aligned_cols=211 Identities=27% Similarity=0.430 Sum_probs=178.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-HhcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~is 1298 (1470)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998877655 467899
Q ss_pred EEccCCCCCcc-cHHHhcCcC-CC--CCHHH-HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL-EQ--HSDQE-IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~-~~--~sd~e-I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
|+||++.+|.+ |+++|+... .. ..+++ ..++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999632 11 12222 233333332 12222233445799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+|++++|||||++||+.+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998653 7899999999999986 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=356.75 Aligned_cols=212 Identities=24% Similarity=0.431 Sum_probs=181.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-Hhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1297 (1470)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999963 35999999999999999999999999999999999999999999999999998877654 57899
Q ss_pred EEEccCCCCCcc-cHHHhcCcCC----CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLE----QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+++||+|.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999998875 9999997431 112 2234555665555432 2333457999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
||++++|++|+|||||++||+.+...+.+.+++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988754 47899999999988765 99999999999999999999875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=369.14 Aligned_cols=212 Identities=25% Similarity=0.373 Sum_probs=183.0
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEccCCCCCc-ccHHHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQ-GTVRTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~-gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||+|.++. .|+++|+... ...+++ ++.++++.+++.+. ++..+ ..||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999631 123332 34456666666433 34444 4699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998863 47899999999999976 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=361.60 Aligned_cols=220 Identities=27% Similarity=0.420 Sum_probs=188.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCCC-HHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIG-LQD 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~-l~~ 1292 (1470)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 3599999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcccEEEccCCCCCcccHHHhcCcC----CCCCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1293 LRSRLSIIPQDPMLFQGTVRTNLDPL----EQHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~gTIR~NLdp~----~~~sd~eI----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
+|++++|+||+|.+|..|+++|+... ...+++++ .+.++.+++.+... +.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 88999999999999999999999632 12344443 34566666643321 22334566899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999876 99999999999999999999987
Q ss_pred cCCC
Q 000475 1444 DNSS 1447 (1470)
Q Consensus 1444 ~~~s 1447 (1470)
++..
T Consensus 252 ~~~~ 255 (276)
T PRK14271 252 SPKH 255 (276)
T ss_pred CcCc
Confidence 6543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=350.09 Aligned_cols=200 Identities=30% Similarity=0.440 Sum_probs=175.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~-~---~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ-P---MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE-e---cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987653 4678999
Q ss_pred EccCCCCCcc-cHHHhcCcC-C---C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL-E---Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~-~---~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+... . . .+++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999732 1 1 23456888999999876655443 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+++|++|+|||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999864 37899999999999976 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=360.43 Aligned_cols=219 Identities=23% Similarity=0.422 Sum_probs=186.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 5899999999964 2599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred HHhcccEEEccCCCCCcc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1292 DLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
.+|+.++++||++.+|.. |+++|+... +..+ ++.+.++++.+++.+.+.. .++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLD----KPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---Hhh----CCcccCCHHHH
Confidence 788999999999999874 999998631 1111 3456677888887544321 123 33467999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe------CCEEEEe
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD------EGKVLEY 1435 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~------~G~vvE~ 1435 (1470)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667999999999999865 99999997 8999999
Q ss_pred cChhHHhhcCC
Q 000475 1436 DSPRQLLEDNS 1446 (1470)
Q Consensus 1436 g~p~~Ll~~~~ 1446 (1470)
|+++++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999987544
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=353.86 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---H
Q 000475 1219 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1293 (1470)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hcccEEEccCCCCCcc-cHHHhcCcC---CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1294 -RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1294 -R~~isiIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
+++++++||+|.+|.+ |+++|+... ... ..+++.++++.+++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999885 999998631 111 2346778888888876654433 3699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEEEEe
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~ 1435 (1470)
++|||||+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998763 37899999999999988999999999999874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=360.91 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=189.2
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCC--CCH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISM--IGL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1290 (1470)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999964 3599999999999999999999999999999999999863 58999999999864 344
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcCC---C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE---Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~~---~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
..+|++++|+||++.+|..|+++|+.... . ..++++.++++.+++.+.+.. .++ .....||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLK----EKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---Hhc----CCcccCCHHHHHH
Confidence 56789999999999999899999996421 1 124456777888887655432 223 3346799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe---------CCEEEE
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD---------EGKVLE 1434 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~---------~G~vvE 1434 (1470)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999999965 99999997 899999
Q ss_pred ecChhHHhhcCC
Q 000475 1435 YDSPRQLLEDNS 1446 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~ 1446 (1470)
.|+++++.+++.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999987654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=358.97 Aligned_cols=222 Identities=19% Similarity=0.310 Sum_probs=191.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCC--CHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMI--GLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1291 (1470)
.+.+++.+++|.+ .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4789999999964 3599999999999999999999999999999999999986 799999999998653 445
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCCC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLEQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
.+|++++|+||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999974311 1235678889998886655322 2345568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEe--------CCEEEEec
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLD--------EGKVLEYD 1436 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~--------~G~vvE~g 1436 (1470)
+|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988777899999999999876 99999996 89999999
Q ss_pred ChhHHhhcCCChH
Q 000475 1437 SPRQLLEDNSSSF 1449 (1470)
Q Consensus 1437 ~p~~Ll~~~~s~f 1449 (1470)
+++++++++...+
T Consensus 239 ~~~~~~~~~~~~~ 251 (261)
T PRK14263 239 PTAQIFQNPREQL 251 (261)
T ss_pred CHHHHHhCCCcHH
Confidence 9999987654333
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=354.72 Aligned_cols=211 Identities=26% Similarity=0.421 Sum_probs=184.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987553 4789999
Q ss_pred EccCCCCCcc-cHHHhcCcCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 11 234567788888876554332 247999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+++|.|+++++++.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999999999987543 7999999999999876 9999999999999999999998643
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=372.71 Aligned_cols=212 Identities=26% Similarity=0.420 Sum_probs=183.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 56889999
Q ss_pred EEccCCCCC-cccHHHhcCcCC---CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLF-QGTVRTNLDPLE---QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF-~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||++.++ ..|+++|+..+. ..+. +.+.++++.+++.+ ..+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHHH
Confidence 999999887 459999996422 1222 23445566666543 345555 3699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|+++|++|+|||||++||+.+...+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47999999999999976 999999999999999999999764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=357.32 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=188.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCC-CCCHHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDIS-MIGLQD 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~-~i~l~~ 1292 (1470)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999963 4599999999999999999999999999999999999986 5999999999986 455677
Q ss_pred HhcccEEEccCCCCCcccHHHhcCcC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1293 LRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
+|+.++|+||+|.+|.+|+++|+... ... . ++++.++++.+++.+.+. +.++. ....||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~----~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK---DRLKS----HAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh---HHhhc----CcccCCHHHHHH
Confidence 89999999999999999999999632 111 1 234566777777765432 12233 345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988777999999999999887 99999999999999999999876
Q ss_pred cCC
Q 000475 1444 DNS 1446 (1470)
Q Consensus 1444 ~~~ 1446 (1470)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=363.44 Aligned_cols=212 Identities=28% Similarity=0.429 Sum_probs=182.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCC--CCCHHHHhccc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~i 1297 (1470)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 35999999999999999999999999999999999999999999999999985 33456788999
Q ss_pred EEEccCCC--CCcccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDPM--LFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp~--LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|+||+|. ++..|+.+|+... ...++ +++.++++.+++.++. +.+ ..+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQP----IQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cCC----chhCCHHHHHHHHHH
Confidence 99999985 5778999998632 11222 3456678888876543 333 357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||+.+|+||+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999965 999999999999999999998764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=358.48 Aligned_cols=223 Identities=24% Similarity=0.372 Sum_probs=187.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS-----GGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~--i~l~ 1291 (1470)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 35999999999999999999999999999999999999874 8999999999975 3455
Q ss_pred HHhcccEEEccCCCCCcc-cHHHhcCcC---CC-CCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1292 DLRSRLSIIPQDPMLFQG-TVRTNLDPL---EQ-HSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~g-TIR~NLdp~---~~-~sd~e----I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
.+|++++|+||+|.+|.+ |+++|+... .. ..+++ ..+.++..++.+.+ ++.++.+ ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999885 999999631 11 12333 33344555554332 2334444 457999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
||++|||||+++|+||+|||||++||..+...+.+.|++..+++|+|+++|+++.+.+ ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999986 999999999999999999999
Q ss_pred hhcCCChHH
Q 000475 1442 LEDNSSSFS 1450 (1470)
Q Consensus 1442 l~~~~s~f~ 1450 (1470)
++++...+.
T Consensus 235 ~~~~~~~~~ 243 (252)
T PRK14272 235 FTNPRDERT 243 (252)
T ss_pred HhCcCcHHH
Confidence 887655553
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=352.57 Aligned_cols=197 Identities=29% Similarity=0.438 Sum_probs=169.7
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEE
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1300 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiI 1300 (1470)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 35999999999999999999999999999999999999999999999998774 578899999
Q ss_pred ccCCCC---CcccHHHhcCcCCC-----------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1301 PQDPML---FQGTVRTNLDPLEQ-----------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1301 pQdp~L---F~gTIR~NLdp~~~-----------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
||+|.+ |..|+++|+..... ..++++.++++.+++.+.... . ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-------Q----IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-------C----cccCCHHHHHHHH
Confidence 999976 56899999863211 123467888899888765433 2 2469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
|||||+++|++|+|||||++||+++...+.+.|++.. +++|||+|||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998864 67899999999999976 9999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=361.58 Aligned_cols=226 Identities=26% Similarity=0.380 Sum_probs=188.6
Q ss_pred cEEEEeEEEEeCC-------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH
Q 000475 1219 KIELENLLVQYNP-------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~-------~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1291 (1470)
.|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123699999999999999999999999999999999999999999999999999865666
Q ss_pred HHhcccEEEccCCC--CCcc-cHHHhcCc---CC-C----CCHHHHHHHHHHcCcH-HHHHhcccccCccccCCCCCCCh
Q 000475 1292 DLRSRLSIIPQDPM--LFQG-TVRTNLDP---LE-Q----HSDQEIWEVINKCHLA-EIVRQDQRLLDAPVAEDGENWSV 1359 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~--LF~g-TIR~NLdp---~~-~----~sd~eI~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLSg 1359 (1470)
..|++++|+||+|. ++.. |+.+|+.. .. . ..++++.++++.+++. +.. +.. ..+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SYY----PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hcC----chhcCH
Confidence 66778999999985 4444 78888742 11 1 1235678889998883 332 222 246999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1360 GQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1360 GQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
|||||++|||||+++|+||+|||||++||+++...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 37899999999999987 9999999999999999
Q ss_pred ChhHHhhcCCC-hHHHHHHH
Q 000475 1437 SPRQLLEDNSS-SFSKLVAE 1455 (1470)
Q Consensus 1437 ~p~~Ll~~~~s-~f~~lv~~ 1455 (1470)
+++++.+++.. .+++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 99999876533 34455544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=367.50 Aligned_cols=211 Identities=23% Similarity=0.355 Sum_probs=186.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 459999999999999999999999999999999999999999999999999987 44678999999
Q ss_pred EccCCCCCcc-cHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+.... ..+ .+++.++++..++.+.. |. ...+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-------HK----KIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-------cC----chhhCCHHHHHHHHHHHHH
Confidence 9999999977 9999996321 122 34566777777775543 22 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
+++|++|+|||||++||+.+.+.+++.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999988778999999999999977 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=362.63 Aligned_cols=213 Identities=27% Similarity=0.442 Sum_probs=183.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC--CCHHHHhccc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1297 (1470)
|+++|++++|+.+ +++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999633 359999999999999999999999999999999999999999999999999853 2345688999
Q ss_pred EEEccCC--CCCcccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|+||+| .+|..|+++|+... ...+ .+++.++++.+++.++. |..+ ..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------NKPP----HHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------cCCh----hhCCHHHHHHHHHH
Confidence 9999998 57889999999631 1122 24567788888876443 3332 46999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||++++|++|+|||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 47899999999999875 999999999999999999998763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=369.62 Aligned_cols=226 Identities=20% Similarity=0.343 Sum_probs=188.5
Q ss_pred cEEEEeEEEEeCC--CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEEcCEeCCCCCHHH
Q 000475 1219 KIELENLLVQYNP--TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE----PSGGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~--~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1292 (1470)
-++++|++++|+. +...+++||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999953 22359999999999999999999999999999999999986 58999999999999888776
Q ss_pred Hh----cccEEEccCCC--CCc-ccHHHhcC-cC------CC------CCHHHHHHHHHHcCcHHHHHhcccccCccccC
Q 000475 1293 LR----SRLSIIPQDPM--LFQ-GTVRTNLD-PL------EQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAE 1352 (1470)
Q Consensus 1293 LR----~~isiIpQdp~--LF~-gTIR~NLd-p~------~~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e 1352 (1470)
++ ++|++|||+|. ++. -||.+|+. +. +. ..++++.++|+.++|.+.-. -++.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~----~~~~---- 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD----AMRS---- 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH----HHhC----
Confidence 53 47999999996 333 48888874 11 10 11346778899998864211 1122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeC
Q 000475 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDE 1429 (1470)
Q Consensus 1353 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~ 1429 (1470)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2347999999999999999999999999999999999999999999998653 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHH
Q 000475 1430 GKVLEYDSPRQLLEDNSSSFSKL 1452 (1470)
Q Consensus 1430 G~vvE~g~p~~Ll~~~~s~f~~l 1452 (1470)
|+|+|.|+++++++++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999998776677653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=358.62 Aligned_cols=213 Identities=22% Similarity=0.386 Sum_probs=182.1
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH-hccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL-RSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1297 (1470)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 359999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred EEEccCCCCCcc-cHHHhcCcCCC-------------------C---CHHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLEQ-------------------H---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~~-------------------~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1354 (1470)
+++||+|.+|.+ |+++|+..... . ..+++.+.++..++.+. .....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999986 99999874210 0 01234455555555432 23344
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000475 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGK 1431 (1470)
Q Consensus 1355 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1431 (1470)
.+||+|||||++||||++++|++|+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 67999999999999999999999999999999999999999999987642 7899999999999976 99999999999
Q ss_pred EEEecChhHHhhc
Q 000475 1432 VLEYDSPRQLLED 1444 (1470)
Q Consensus 1432 vvE~g~p~~Ll~~ 1444 (1470)
+++.|+++++.++
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998753
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=351.37 Aligned_cols=208 Identities=24% Similarity=0.394 Sum_probs=183.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++||+++|+. . ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999987644 3678999
Q ss_pred EccCCCCCcc-cHHHhcCc-CCC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDP-LEQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp-~~~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+.. +.. ..++++.++++.+++.+.+...| ..||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 99999973 211 12456888999999987765544 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
+++|++++|||||++||+++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999988643 7899999999999876 999999999999999999999864
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=365.45 Aligned_cols=220 Identities=27% Similarity=0.477 Sum_probs=189.5
Q ss_pred CCcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCCC--C
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMI--G 1289 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i--~ 1289 (1470)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999964 359999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHHhcccEEEccCCCCCcccHHHhcCcC-C-------------------CCCHHHHHHHHHHcCcHHHHHhcccccCcc
Q 000475 1290 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL-E-------------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349 (1470)
Q Consensus 1290 l~~LR~~isiIpQdp~LF~gTIR~NLdp~-~-------------------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~ 1349 (1470)
...+|++++|+||++.+|.+|+++|+... . +..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 66789999999999999999999999631 0 012345777888887754332 23
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEE-EEE
Q 000475 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLV-LVL 1427 (1470)
Q Consensus 1350 v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrI-lvL 1427 (1470)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34456789999999999999999999999999999999999999999999988777899999999999876 9997 578
Q ss_pred eCCEEEEecChhHHhhcC
Q 000475 1428 DEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1428 ~~G~vvE~g~p~~Ll~~~ 1445 (1470)
++|++++.|+++++.+++
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=362.97 Aligned_cols=223 Identities=24% Similarity=0.371 Sum_probs=188.4
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCEeCCCC--CH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISMI--GL 1290 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i--~l 1290 (1470)
..|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... ..
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999964 359999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HHHhcccEEEccCCCCCcccHHHhcCcC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1291 QDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
..+|++++|+||+|.+|.+|+++|+... ... + ++++.++++..++.+.+. +.++. ....||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDK----NALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhC----ChhhCCHHHH
Confidence 4678999999999999989999999632 111 1 234667777777654322 22333 3457999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
||++|||||+++|++|||||||++||+++...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|++++.|++.++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred hhcCCChH
Q 000475 1442 LEDNSSSF 1449 (1470)
Q Consensus 1442 l~~~~s~f 1449 (1470)
.+++...+
T Consensus 269 ~~~~~~~~ 276 (286)
T PRK14275 269 FTNPKDRM 276 (286)
T ss_pred HhCCCcHH
Confidence 87655444
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=357.82 Aligned_cols=222 Identities=24% Similarity=0.381 Sum_probs=188.1
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCEeCCC--CCHH
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--P---SGGRILIDGVDISM--IGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1291 (1470)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 459999999999999999999999999999999999975 4 58999999999964 3455
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcC---CCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPL---EQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
.+|++++|+||+|.+|..|+++|+... ... . ++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 111 1 345666777777654332 1123344679999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
|++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999998
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7665444
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=351.95 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=172.4
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH---HHHh
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR 1294 (1470)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 269999999999999999999999999999999999999999999999999988763 5788
Q ss_pred cccEEEccCC--CCC-cccHHHhcCc----CC-CCCHHHH----HHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1295 SRLSIIPQDP--MLF-QGTVRTNLDP----LE-QHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1295 ~~isiIpQdp--~LF-~gTIR~NLdp----~~-~~sd~eI----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
++++|+||+| .++ ..|+++|+.. .. ...+++. .+.++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 4699999852 11 1112211 24555555521 112233467999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
||++|||||+++|+||+|||||++||+++...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998653 7899999999999874 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=358.73 Aligned_cols=211 Identities=27% Similarity=0.413 Sum_probs=185.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EccCCC-CCcccHHHhcCcCC----C-------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHH
Q 000475 1300 IPQDPM-LFQGTVRTNLDPLE----Q-------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1300 IpQdp~-LF~gTIR~NLdp~~----~-------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1367 (1470)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.. |.. ...||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-------DRD----MSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-------cCC----cccCCHHHHHHHHH
Confidence 999985 45679999995421 0 1234578888888886543 222 34699999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1368 ARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||++.+|++++|||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998764 36899999999999955 99999999999999999998865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=349.39 Aligned_cols=202 Identities=27% Similarity=0.377 Sum_probs=174.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH---Hhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1296 (1470)
|+++|++++|+++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred cEEEccCCCCC-cccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1297 LSIIPQDPMLF-QGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1297 isiIpQdp~LF-~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
++|+||+|.+| ..|+++|+... ...++ +++.++++..++.+...+. ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 66999999642 12232 2456778888776554332 357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1433 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv 1433 (1470)
||++++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999763 47899999999999976 8999999999985
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=349.87 Aligned_cols=200 Identities=26% Similarity=0.459 Sum_probs=172.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. .++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 359999999999999999999999999999999999999999999999998753 56889999
Q ss_pred EccCCCCCcc-cHHHhcCcCC---CC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPLE---QH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||++.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999985321 11 13456667777777554322 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+++|++|+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 47899999999999876 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=371.76 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=177.5
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCE----eCCCCCHHHH---h-cccEEEccCCC
Q 000475 1234 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV----DISMIGLQDL---R-SRLSIIPQDPM 1305 (1470)
Q Consensus 1234 ~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~----dI~~i~l~~L---R-~~isiIpQdp~ 1305 (1470)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+ | ++++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 6777766554 3 58999999999
Q ss_pred CCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000475 1306 LFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1306 LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1377 (1470)
+|+ .|+++|+... ...+ .+...++++.++|.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999632 1122 235678888888876543332 36999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450 (1470)
Q Consensus 1378 LlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~ 1450 (1470)
|+||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 999999999999999999999988653 7899999999999865 999999999999999999999977655443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=347.06 Aligned_cols=201 Identities=23% Similarity=0.399 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. +++|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 468999999999999999999999999999999999999999999999997643 46889999
Q ss_pred EccCCCCCcc-cHHHhcCc-CC---C---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDP-LE---Q---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp-~~---~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+...+.| .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 99999862 21 1 13456788999999877655444 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecC
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~ 1437 (1470)
+++|+|++|||||++||.++...+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999864 37899999999999876 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=346.80 Aligned_cols=199 Identities=30% Similarity=0.420 Sum_probs=169.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++|+|+. .+.+++ ||++++|++++|+|||||||||||++|+|.++|.+|++ .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 4789999999974 478999 99999999999999999999999999999999999997 8888
Q ss_pred ----EeEEEcCCCCC-CCccHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 ----KKAYVPQSSWI-QTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 ----~~ayv~Q~~~i-~~~Ti~eNI~~g~~~-----------~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.+|||||++.. +..||+|-+.+|+.- |++..+++++.+++.+-. ++...+|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccCh
Confidence 47999999765 567999999999631 222344456666655432 245678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEec
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g 801 (1470)
||||||.|||||.++|+|+|||||||+||.....++++.+.+.. .+|+|+|+|+||++.. ..||++++|++|+++.+|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999987544333 3489999999999986 569999999999999999
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
+++|.+.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9999886
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=342.16 Aligned_cols=198 Identities=33% Similarity=0.507 Sum_probs=167.0
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..|+++|++|+|+.+ +.|+| ||++++|++++|+||||||||||+|+|+|.++|.+|++ .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 358999999999742 58999 99999999999999999999999999999999999997 6544
Q ss_pred --EeEEEcCC---CCCCCccHHHHHhcCCCCC-----------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 --KKAYVPQS---SWIQTGTIRENILFGKDMR-----------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 --~~ayv~Q~---~~i~~~Ti~eNI~~g~~~~-----------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
+||||||. .|-|..||+|-+.+|.... .+..+++++..++.+ + ...+-.+|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~----------~~r~i~~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-L----------RDRQIGELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-h----------hCCcccccCc
Confidence 59999995 5678899999999985332 355666677666652 2 2245668999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 801 (1470)
||+|||-|||||.++||+++|||||+++|+.++..+++ ++..+. +|+||++||||++.+. .+|+|+.|+ +++...|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 99999999999999999999999999999999888876 555554 4899999999999876 599999985 4677889
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
++++..+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9999875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=348.84 Aligned_cols=200 Identities=29% Similarity=0.464 Sum_probs=172.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC--CCHHHHhccc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1297 (1470)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999853 3456788999
Q ss_pred EEEccCCCCCc-ccHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1368 (1470)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999886 5999999642 1222 23466777777776544332 257999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000475 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432 (1470)
Q Consensus 1369 RALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~v 1432 (1470)
||++++|++|+|||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999764 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=355.61 Aligned_cols=221 Identities=21% Similarity=0.364 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEe-----CCCCCHHH-
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD-----ISMIGLQD- 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1292 (1470)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 359999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---HhcccEEEccCCC--CCc-ccHHHhcCc----CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000475 1293 ---LRSRLSIIPQDPM--LFQ-GTVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1293 ---LR~~isiIpQdp~--LF~-gTIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
.|+.++|+||+|. ++. .|+++|+.. +.... ++++.++++..++.+ ......+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3568999999984 333 478888741 22111 223445555555421 12334557899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
||||||++|||||+++|+||+|||||++||+.+.+.+.+.|++..+ +.|||+|+|+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCChHHH
Q 000475 1436 DSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1436 g~p~~Ll~~~~s~f~~ 1451 (1470)
|+++++.+++...|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQ 249 (258)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998766544544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=362.49 Aligned_cols=213 Identities=29% Similarity=0.509 Sum_probs=189.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++.+|..+ ..+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999732 3599999999999999999999999999999999999999999999999998765 678999999
Q ss_pred EEccCCCCCcc-cHHHhcCcCC-------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLE-------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~~-------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
|+||+|.+++. |++|||+.+. ...++.+.+.++..+|.+.- +.++ ..||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHHH
Confidence 99999998877 9999998532 12356788999999987621 2333 4699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS-R-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~-~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|+.+|++|+|||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998765 4 799999999999988 999999999999999999998654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=354.66 Aligned_cols=224 Identities=27% Similarity=0.421 Sum_probs=188.7
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEc------CEeCCCCCHH
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID------GVDISMIGLQ 1291 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID------G~dI~~i~l~ 1291 (1470)
..|+++|++++|+. .++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.++ |.++.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35899999999964 459999999999999999999999999999999999999998666655 4677777777
Q ss_pred HHhcccEEEccCCCCCcc-cHHHhcCcC----CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1292 DLRSRLSIIPQDPMLFQG-TVRTNLDPL----EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~g-TIR~NLdp~----~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
.+|++++|+||+|.+|.+ |+++|+... +...++ .+.++++..++.+.+.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 889999999999999976 999999732 111222 34667777777543311 12234567999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
||++||||++++|++++|||||++||..+...+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987778999999999999955 999999999999999999999
Q ss_pred hhcCCChHH
Q 000475 1442 LEDNSSSFS 1450 (1470)
Q Consensus 1442 l~~~~s~f~ 1450 (1470)
.+++...+.
T Consensus 240 ~~~~~~~~~ 248 (257)
T PRK14246 240 FTSPKNELT 248 (257)
T ss_pred HhCCCcHHH
Confidence 876654454
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=365.61 Aligned_cols=203 Identities=25% Similarity=0.419 Sum_probs=177.0
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCC
Q 000475 1228 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307 (1470)
Q Consensus 1228 ~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF 1307 (1470)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 359999999999999999999999999999999999999999999999999976 3456789999999999999
Q ss_pred cc-cHHHhcCcCC---CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000475 1308 QG-TVRTNLDPLE---QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379 (1470)
Q Consensus 1308 ~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1379 (1470)
.. |+++|+.... ..+ ++++.++++.+++.+.. +..+ .+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999996421 122 34577888888886543 3333 4699999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1380 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1380 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 47899999999999976 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=353.91 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEEcCEeCCCCCHHHHh
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR 1294 (1470)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEccCCC-CCc--ccHHHhcCc----CC-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1295 SRLSIIPQDPM-LFQ--GTVRTNLDP----LE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 ~~isiIpQdp~-LF~--gTIR~NLdp----~~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
++++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+. ++.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 443 477777531 11 2345678888998887542 11223344679999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998643 7899999999999875 99999999999999999999987
Q ss_pred cCCC-hHHHHHH
Q 000475 1444 DNSS-SFSKLVA 1454 (1470)
Q Consensus 1444 ~~~s-~f~~lv~ 1454 (1470)
++.. .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 6554 3444443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=351.66 Aligned_cols=231 Identities=36% Similarity=0.622 Sum_probs=198.1
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHH
Q 000475 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1470)
Q Consensus 565 Ri~~fL~~~e~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~l 643 (1470)
.+.+.|..+.+++... +.......++++|+++.+ .+.+++ ||++++|++++|+|+||||||||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~~~l~i~nls~~~----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 16 GFGELLEKAKQENNDR--KHSSDDNNLFFSNLCLVG----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHhccccccccc--ccCCCCCeEEEEEEEEec----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4555565544332222 223345679999999962 247888 999999999999999999999999999
Q ss_pred hCCCcCCCCcEEEECCEeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 644 lG~~~~~~G~~i~~~g~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
+|.++|.+|++ .++|.++|++|++++++.|++||+.++......++.+.++++++.+.++.++.+..+.+++++.+|||
T Consensus 84 ~Gl~~p~~G~I-~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCcEE-EECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 99999999997 89999999999999998999999999865555566777888888888889999888889999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecCh
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 803 (1470)
|||||++||||++.+|+++||||||++||+.+...+.+.++..+.+++|+|++||+++++..||++++|++|++++.|+.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999887876555555568999999999999888999999999999999999
Q ss_pred hhHHh
Q 000475 804 EDLIA 808 (1470)
Q Consensus 804 ~~l~~ 808 (1470)
+++..
T Consensus 243 ~~~~~ 247 (282)
T cd03291 243 SELQS 247 (282)
T ss_pred HHHHh
Confidence 88875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=368.85 Aligned_cols=214 Identities=24% Similarity=0.381 Sum_probs=186.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC----CHHHHhc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQDLRS 1295 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1295 (1470)
|++ |++++|... . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~~---~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 2 399999999999999999999999999999999999999999999998753 2455788
Q ss_pred ccEEEccCCCCCcc-cHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
+++|+||++.+|.. |+++|+... ....++++.++++.+++.+.....| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 99999999999975 999999742 3344667888999998866554433 4799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~~ 224 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRP 224 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchhh
Confidence 9999999999999999999999999987653 6899999999998876 99999999999999999999998776433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=329.37 Aligned_cols=203 Identities=29% Similarity=0.446 Sum_probs=173.0
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1470)
...|+++++++++.+ ...+++ ||+|++||+++|+|++||||||||++|+|+++|++|++ .+.|
T Consensus 6 ~~~I~vr~v~~~fG~--------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD--------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC--------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 457999999999964 467888 99999999999999999999999999999999999997 7776
Q ss_pred ---------EeEEEcCCCCCCC-ccHHHHHhcCC----CCCHHHHHH----HHHHhcchHH-HHhccCCCcccccCCCCC
Q 000475 660 ---------KKAYVPQSSWIQT-GTIRENILFGK----DMRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 ---------~~ayv~Q~~~i~~-~Ti~eNI~~g~----~~~~~~y~~----v~~~~~l~~d-~~~l~~g~~t~ig~~g~~ 720 (1470)
++|+++|+.-+|+ .||+||+.|.. ...++..++ -++.++|..+ .+.+ +.+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chh
Confidence 3699999999987 59999999963 234444443 3567777776 4444 468
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
||||++.|++||||+..||+++++|||||+|||.++. .|+++++.+.+ +-|+|+||||++.+.. ||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999999755 45677766543 7899999999998765 999999999999
Q ss_pred EEecChhhHHhhch
Q 000475 798 EQSGKYEDLIADQN 811 (1470)
Q Consensus 798 ~~~g~~~~l~~~~~ 811 (1470)
...|+++|+.+..+
T Consensus 225 ~~~Gt~~el~~sd~ 238 (263)
T COG1127 225 IAEGTPEELLASDD 238 (263)
T ss_pred EEeCCHHHHHhCCC
Confidence 99999999988333
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=349.27 Aligned_cols=209 Identities=23% Similarity=0.349 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5899999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCcccHHHhcCcC----CC-CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1299 IIPQDPMLFQGTVRTNLDPL----EQ-HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1299 iIpQdp~LF~gTIR~NLdp~----~~-~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
++||+|.+|+.|+++|+... .. ..++++.++++.+++.+.. ......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 1234566777777774311 123345799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEe-CCEEEEecChh
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLD-EGKVLEYDSPR 1439 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~-~G~vvE~g~p~ 1439 (1470)
+|++++|||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..||+|++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999864 3789999999999998899999995 56667777764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=353.29 Aligned_cols=212 Identities=21% Similarity=0.279 Sum_probs=178.0
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEEcCEeCCCCCHHHH-hcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDL-RSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~L-R~~ 1296 (1470)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 35999999999999999999999999999999999994 7999999999999998877664 456
Q ss_pred cEEEccCCCCCcc-cHHHhcCcC----CC------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPL----EQ------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~----~~------~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQ 1361 (1470)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..|||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999887 899998421 10 11 23456667777664211 233332 2499999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCEEEEEeCCEEEEecCh
Q 000475 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID--NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1362 rQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~--~DrIlvL~~G~vvE~g~p 1438 (1470)
|||++|||||+++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999864 47899999999999976 799999999999999998
Q ss_pred hHHh
Q 000475 1439 RQLL 1442 (1470)
Q Consensus 1439 ~~Ll 1442 (1470)
+++-
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=354.59 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=184.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--------CcEEEEcCEeCCCCCHH
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS--------GGRILIDGVDISMIGLQ 1291 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~--------~G~I~IDG~dI~~i~l~ 1291 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999964 35999999999999999999999999999999999999998 99999999999888888
Q ss_pred HHhcccEEEccCCC-CCcccHHHhcCcCC--------CC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCCh
Q 000475 1292 DLRSRLSIIPQDPM-LFQGTVRTNLDPLE--------QH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSV 1359 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~-LF~gTIR~NLdp~~--------~~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSg 1359 (1470)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+.. + .....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-------G----RDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-------c----CCcccCCH
Confidence 88889999999985 57889999996421 11 123467788888775432 2 23457999
Q ss_pred hHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEE
Q 000475 1360 GQRQLVCLARVLL---------KKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVL 1427 (1470)
Q Consensus 1360 GQrQrl~LARALL---------r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL 1427 (1470)
|||||++|||||+ .+|++|+|||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998643 6899999999999965 9999999
Q ss_pred eCCEEEEecChhHHhh
Q 000475 1428 DEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1428 ~~G~vvE~g~p~~Ll~ 1443 (1470)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=391.48 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=96.8
Q ss_pred ccCc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000475 1345 LLDA-PVAEDGENWSVGQRQLVCLARVLLKKK---RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI 1419 (1470)
Q Consensus 1345 gLdt-~v~e~G~nLSgGQrQrl~LARALLr~~---~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~ 1419 (1470)
||+. ..+.....||||||||+.|||+|+++| +++||||||++||+++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4544 356667889999999999999999999 9999999999999999999999998764 5789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCCChHHHHHHH
Q 000475 1420 DNDLVLVL------DEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455 (1470)
Q Consensus 1420 ~~DrIlvL------~~G~vvE~g~p~~Ll~~~~s~f~~lv~~ 1455 (1470)
.||+|++| ++|+|++.|+|+++.+++.|.=.+..+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~ 939 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKP 939 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHH
Confidence 99999999 7999999999999998776654444433
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=355.83 Aligned_cols=204 Identities=30% Similarity=0.428 Sum_probs=173.6
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.|+++|++.+|.+. . .+++ |+++++||+++++|||||||||||++|+|+.+|++|++ .++|+
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58999999999743 2 7889 99999999999999999999999999999999999997 78774
Q ss_pred ---eEEEcCCCCC-CCccHHHHHhcCCCCC-------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 661 ---KAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 661 ---~ayv~Q~~~i-~~~Ti~eNI~~g~~~~-------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
+|+|+|+.-+ ++.||+|||.||.... +++.+++.+..++++.++ .++.+|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHH
Confidence 6999999877 4579999999997653 455666677777766655 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhhH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 806 (1470)
|||||+.++|+++|||||+|+||++....+-.++. .+. -+.|+|+||||..+.. -+|+|++|++|+|.+.|++.|+
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~-~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK-KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH-HHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 99999999999999999999999999877755543 332 2689999999998765 5999999999999999999999
Q ss_pred HhhchhHH
Q 000475 807 IADQNSEL 814 (1470)
Q Consensus 807 ~~~~~~~~ 814 (1470)
..++...|
T Consensus 222 y~~P~n~f 229 (338)
T COG3839 222 YERPANLF 229 (338)
T ss_pred hhCccchh
Confidence 87554443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=329.00 Aligned_cols=215 Identities=26% Similarity=0.438 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-Hhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1297 (1470)
-++++|++..|.+ -.+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||+..+.|+ .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3689999999976 35999999999999999999999999999999999999999999999999999999988 68899
Q ss_pred EEEccCCCCCcc-cHHHhcCcCCC------CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLEQ------HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~~------~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
+||||...+|.. ||.|||..... ..+..+.++.+. .| -|...-...+.+|||||+|.++||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FP-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Ch-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999977 99999974311 111112222222 12 12333344567899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
|+.+||+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+|+..|++++|.+++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998764 5699999999998765 9999999999999999999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=352.11 Aligned_cols=210 Identities=23% Similarity=0.369 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEEcCEeCCCCC-----H
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS---GGRILIDGVDISMIG-----L 1290 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~---~G~I~IDG~dI~~i~-----l 1290 (1470)
-|+++||+++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+ .
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 35999999999999999999999999999999999999986 499999999987542 3
Q ss_pred HHHhcccEEEccCCCCCcc-cHHHhcCcCC---------------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCC
Q 000475 1291 QDLRSRLSIIPQDPMLFQG-TVRTNLDPLE---------------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354 (1470)
Q Consensus 1291 ~~LR~~isiIpQdp~LF~g-TIR~NLdp~~---------------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G 1354 (1470)
..+|++++|+||++.+|.+ |+++|+.... ...++++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998875 9999996311 1123456778888887654432 23
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000475 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGK 1431 (1470)
Q Consensus 1355 ~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1431 (1470)
..||+|||||++|||||+.+|++|+|||||++||.++.+.+.+.|++.. .++|||+++|+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999864 37899999999998755 99999999999
Q ss_pred EEEecChhHH
Q 000475 1432 VLEYDSPRQL 1441 (1470)
Q Consensus 1432 vvE~g~p~~L 1441 (1470)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999996
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=325.00 Aligned_cols=205 Identities=24% Similarity=0.367 Sum_probs=171.6
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCC-----CcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~-----G~~i~~~g--- 659 (1470)
..++++|.++.|.. ...|++ |++|++++++|++||+||||||||+++.+..+..+ |++ .++|
T Consensus 6 ~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKNI 76 (253)
T ss_pred ceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCeec
Confidence 46899999999974 357889 99999999999999999999999999999877665 554 4544
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCCCC---H----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~---~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
++|+|+|.|.-|..||+|||.+|.... . +..++.++..+|-+..+. .+.+.+..
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~ 149 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALG 149 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccC
Confidence 359999999999999999999995432 1 234444555555444332 24467788
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
|||||+||++||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|||+|||+++.... +|+...+.+|++++
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999988887 6678888788899999999998765 89999999999999
Q ss_pred ecChhhHHhhc
Q 000475 800 SGKYEDLIADQ 810 (1470)
Q Consensus 800 ~g~~~~l~~~~ 810 (1470)
.|+.++++.++
T Consensus 229 ~g~T~~iF~~P 239 (253)
T COG1117 229 FGPTDKIFTNP 239 (253)
T ss_pred EcCHHhhhcCc
Confidence 99999988743
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=351.31 Aligned_cols=201 Identities=23% Similarity=0.287 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999964 3599999999999999999999999999999999999999999999999998642 346899
Q ss_pred EccCCCCCc-ccHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999632 1122 2356778888887654432 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEe--CCEEEEecCh
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLD--EGKVLEYDSP 1438 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~--~G~vvE~g~p 1438 (1470)
+++|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998863 47999999999999866 99999998 5999998764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.95 Aligned_cols=204 Identities=26% Similarity=0.414 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++... . ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999987642 2 358999
Q ss_pred EccCCCCCc-ccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
+||++.+|. .|+++|+... ...+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998631 234567888999999887654332 2469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998764 47899999999999865 99999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=337.94 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=180.3
Q ss_pred EEEeeeEEEeCCCccccCCC--cccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCEeEEEcCC
Q 000475 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~--~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~~ayv~Q~ 667 (1470)
++++|++++|+.. .. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|.++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4689999999643 10 357889 99999999999999999999999999999999999997 899999999999
Q ss_pred CCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCc
Q 000475 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1470)
Q Consensus 668 ~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep 747 (1470)
|.+++.|++||+.++.+.+.++..++.+.+++.+.+..+|.|.++.+++++.+||||||||++||||++.+|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999877766677778888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCE
Q 000475 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1470)
Q Consensus 748 ~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~ 796 (1470)
|++||++..+.+++.++.... +++|+|++||+++.+..||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999998888876665443 4789999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=329.50 Aligned_cols=171 Identities=44% Similarity=0.745 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+...+.+++|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1379 (1470)
+||+|.+|+.|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000475 1380 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1431 (1470)
Q Consensus 1380 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1431 (1470)
|||||++||+++...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998777899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=344.43 Aligned_cols=202 Identities=23% Similarity=0.325 Sum_probs=175.7
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH---HHh
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1294 (1470)
++++|++++|+++. ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEccCCCCCc-ccHHHhcCcCC----CCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1295 SRLSIIPQDPMLFQ-GTVRTNLDPLE----QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~-gTIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
+.++++||+|.+|. .|+.+|+.... ..+ ++++.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 69999997421 222 234677788888866655443 46999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCEEEEEeCCEE
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKV 1432 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~~DrIlvL~~G~v 1432 (1470)
+|||||+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998865 37999999999997666999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=339.77 Aligned_cols=205 Identities=33% Similarity=0.450 Sum_probs=169.5
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.|.+++.+..|+. ...++| +++|+.||.+|+.|||||||||||++|+|+..|++|.+ .++|+
T Consensus 2 ~i~i~~~~~~~~~--------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKKRFGA--------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhhhccc--------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhcc
Confidence 3667777777764 356668 99999999999999999999999999999999999986 77775
Q ss_pred ------eEEEcCCCCCC-CccHHHHHhcCCCCC---------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 661 ------KAYVPQSSWIQ-TGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 661 ------~ayv~Q~~~i~-~~Ti~eNI~~g~~~~---------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
||||+|+.-+| ..||.|||.||.+.. +.+.++.++.|.|+.--+ ..+..||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGG 141 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGG 141 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChH
Confidence 69999997765 579999999997432 344556677777654333 346799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 801 (1470)
|||||||||||..+|+++||||||+|||++..+.+-. .+.... + +.|+|+||||.++.- .||+|++|++|+|.+.|
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~-wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHH-HHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC
Confidence 9999999999999999999999999999999877644 444333 3 789999999999864 59999999999999999
Q ss_pred ChhhHHhhchhHHH
Q 000475 802 KYEDLIADQNSELV 815 (1470)
Q Consensus 802 ~~~~l~~~~~~~~~ 815 (1470)
+++|+...++..|.
T Consensus 221 ~p~ev~~~P~s~fV 234 (345)
T COG1118 221 PPDEVYDHPASRFV 234 (345)
T ss_pred CHHHHhcCCCccce
Confidence 99999876655443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=342.65 Aligned_cols=210 Identities=30% Similarity=0.454 Sum_probs=182.4
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4688999999642 2457889 99999999999999999999999999999999999986 6766
Q ss_pred ---EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHH
Q 000475 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1470)
Q Consensus 660 ---~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1470)
.++|++|++++++.|++||+.++.. .......+.++..++.+.++.+|.|..+..+.++.+|||||||||+||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3799999999998999999998653 333444455566677777888888888888889999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHh
Q 000475 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
+.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++..||+|++|++|++++.|+++++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMR-NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999887765 4555556899999999999997899999999999999999988876
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=364.74 Aligned_cols=212 Identities=24% Similarity=0.373 Sum_probs=181.6
Q ss_pred eEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC----HHHHhcccEE
Q 000475 1224 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG----LQDLRSRLSI 1299 (1470)
Q Consensus 1224 nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~----l~~LR~~isi 1299 (1470)
|++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 889999642 24 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred EccCCCCCcc-cHHHhcCcC-CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL-EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~-~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
+||+|.+|.+ |+++|+... .... ++++.+.++..++.+..... ..+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999976 999999742 1111 23467778888776544332 35699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~ 1450 (1470)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999999999988643 7899999999999876 999999999999999999999987765553
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=338.17 Aligned_cols=216 Identities=25% Similarity=0.394 Sum_probs=190.1
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCE---eCCCCCHHHHhc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV---DISMIGLQDLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~---dI~~i~l~~LR~ 1295 (1470)
.|+++|++..|+. -.+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++ +.-.+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 3778888888864 35899999999999999999999999999999999999999999999999 77763 44457
Q ss_pred ccEEEccCCCCCcc-cHHHhcCcCC---------CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDPLE---------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp~~---------~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
+||++.||.-||.. ||++|+...- ...+..+.+.|+.|+|...-...| ..||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 89999999999976 9999997532 123456777899999887766655 36899999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+|||||...|++|+||||.++||..-...+++-|++.. -++|++.|||+.+.+.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998754 37999999999998866 9999999999999999999999
Q ss_pred hcCCChH
Q 000475 1443 EDNSSSF 1449 (1470)
Q Consensus 1443 ~~~~s~f 1449 (1470)
..+++.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9999887
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=344.38 Aligned_cols=192 Identities=24% Similarity=0.314 Sum_probs=148.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.+-+.||+|.|+... +.+++++|-|.--.+|+||||+|.|||||+++|.|-++|+.|+..=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 356899999997654 58999999999999999999999999999999999999999986433 356789
Q ss_pred EEccCCC--C-CcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1299 IIPQDPM--L-FQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1299 iIpQdp~--L-F~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
...|..- | -..|--+.|.-.-...-++-..+|...||....... ....|||||+-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 8888652 1 122444444332233445666777777765432211 12469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh--cCEEEEEeCCEEEEe
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID--NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~--~DrIlvL~~G~vvE~ 1435 (1470)
+||||||||++||.++-..+-++|+++ +..||+|+|+-..|.. |. .+|+++-.|-|.
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~-LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCN-LWVVENQGIDEI 782 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCce-EEEEccCChhhc
Confidence 999999999999999999999999986 4589999999888854 44 556665555443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=349.33 Aligned_cols=223 Identities=23% Similarity=0.369 Sum_probs=183.9
Q ss_pred cEEEEeEEEEeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH
Q 000475 1219 KIELENLLVQYNPT-------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~-------~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1291 (1470)
.|+++||+++|+.+ ..++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999741 24699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhcccEEEccCCC--CC-cccHHHhcCc-C---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000475 1292 ---DLRSRLSIIPQDPM--LF-QGTVRTNLDP-L---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1357 (1470)
Q Consensus 1292 ---~LR~~isiIpQdp~--LF-~gTIR~NLdp-~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1357 (1470)
.+|++++|+||+|. ++ ..|+++|+.. . ...+ ++.+.++++..++.. .........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 47889999999983 44 4699999742 1 1111 123455555554421 1223345679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000475 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1358 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE 1434 (1470)
|+|||||++|||||+++|+||+|||||++||.++...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987643 7899999999999976 99999999999999
Q ss_pred ecChhHHhhcCCChHHHH
Q 000475 1435 YDSPRQLLEDNSSSFSKL 1452 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~f~~l 1452 (1470)
.|+++++.+ .++.|..-
T Consensus 233 ~g~~~~~~~-~~~~~~~~ 249 (268)
T PRK10419 233 TQPVGDKLT-FSSPAGRV 249 (268)
T ss_pred eCChhhccC-CCCHHHHH
Confidence 999999885 45555433
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=354.46 Aligned_cols=208 Identities=32% Similarity=0.419 Sum_probs=176.4
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1470)
..++++|++.+|.+ ...++| ||+|++||+++++|||||||||||++|+|..+|++|++ .++|+
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46899999999973 467888 99999999999999999999999999999999999986 88875
Q ss_pred ----eEEEcCCCCCC-CccHHHHHhcCCCC----C-H---HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 661 ----KAYVPQSSWIQ-TGTIRENILFGKDM----R-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 661 ----~ayv~Q~~~i~-~~Ti~eNI~~g~~~----~-~---~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
+++|+|+--|| +.||+|||.||... . + ++.+++++..+|.+-. ..++..|||||||
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHH
Confidence 59999997775 57999999999762 1 2 3556666666655422 3567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcch-hhhcCEEEEEeCCEEEEecChhh
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~ 805 (1470)
||||||||..+|+++|||||+||||.+.+.++-.++..... .|.|.|+||||.++ +..+|+|.+|++|+|.+.|+++|
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 99999999999999999999999999998888766554332 38999999999987 56699999999999999999999
Q ss_pred HHhhchhHHHH
Q 000475 806 LIADQNSELVR 816 (1470)
Q Consensus 806 l~~~~~~~~~~ 816 (1470)
+...+...|..
T Consensus 224 iY~~P~~~fVA 234 (352)
T COG3842 224 IYERPATRFVA 234 (352)
T ss_pred HhhCcchHHHH
Confidence 98866665544
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=323.51 Aligned_cols=215 Identities=24% Similarity=0.426 Sum_probs=184.9
Q ss_pred CcEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-Hhcc
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSR 1296 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~ 1296 (1470)
+.+..+|+..+|.. ..|++|+||++++||.||+.||||+||||.+..+.|++.|++|+|.+||.||+.++++. -|-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 45788999999975 36999999999999999999999999999999999999999999999999999999987 6788
Q ss_pred cEEEccCCCCCcc-cHHHhcCcCCCCC---------HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPLEQHS---------DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~~~~s---------d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
|||+||||.+|.+ ||++||...-+.. .+++.+.|+..++... -...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHH
Confidence 9999999999988 9999996432221 1223344454444322 22346789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhhcCEEEEEeCCEEEEecChhHHhhc
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-VIDNDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t-i~~~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|||||..+|+.++||||.|++||-+-..||+.|+... +|--|++.-|.... +.-|||.+++.+|+|...|+|+++.+|
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998764 56789999999875 555999999999999999999999987
Q ss_pred C
Q 000475 1445 N 1445 (1470)
Q Consensus 1445 ~ 1445 (1470)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 5
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=345.38 Aligned_cols=222 Identities=20% Similarity=0.346 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEe-----CCCCCHHH-
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD-----ISMIGLQD- 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1292 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ---HhcccEEEccCCC--C-CcccHHHhcC----cCCC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000475 1293 ---LRSRLSIIPQDPM--L-FQGTVRTNLD----PLEQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1293 ---LR~~isiIpQdp~--L-F~gTIR~NLd----p~~~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
+++.++++||+|. + +..|+.+|+. .... ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999984 2 3457888863 1111 12344555566555531 12233456799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
||||||++|||||+++|++|+|||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998754 37899999999999986 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 000475 1436 DSPRQLLEDNSSSFSKL 1452 (1470)
Q Consensus 1436 g~p~~Ll~~~~s~f~~l 1452 (1470)
|+++++..++...|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987665555443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=327.97 Aligned_cols=170 Identities=31% Similarity=0.539 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 25999999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EccCCCCCcc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000475 1300 IPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1378 (1470)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|+|+
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999887 9999973 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000475 1379 VLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432 (1470)
Q Consensus 1379 lLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~v 1432 (1470)
+|||||++||+.+.+.+.+.|++.. ++.|+|+++|+.+.+.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999864 46899999999999875 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=328.60 Aligned_cols=172 Identities=35% Similarity=0.530 Sum_probs=159.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCC--HHHHhccc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRL 1297 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1297 (1470)
|+++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEccCCCCCcc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
+|+||+|.+|.+ |+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998653 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCE
Q 000475 1377 ILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGK 1431 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~ 1431 (1470)
+++|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=342.23 Aligned_cols=229 Identities=24% Similarity=0.431 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCCC--CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC-C----CCcEEEEcCEeCCCCCHHH
Q 000475 1220 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-P----SGGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~--~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~-p----~~G~I~IDG~dI~~i~l~~ 1292 (1470)
++++|+++.|..+. -.+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996532 369999999999999999999999999999999999997 3 5799999999999999876
Q ss_pred Hh----cccEEEccCCCC-Ccc--cHHHhcC----cCCCC-C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000475 1293 LR----SRLSIIPQDPML-FQG--TVRTNLD----PLEQH-S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356 (1470)
Q Consensus 1293 LR----~~isiIpQdp~L-F~g--TIR~NLd----p~~~~-s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1356 (1470)
+| ++|++|||||.- |+- ||.+-+. ..... + .++..+.|+.+++.+--+ .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 43 489999999851 211 3333321 11111 1 335777888888764311 11222356
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000475 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1433 (1470)
Q Consensus 1357 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv 1433 (1470)
||||||||+.||-||+.+|++||-||||++||..+.++|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998765 48999999999999976 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHHHH
Q 000475 1434 EYDSPRQLLEDNSSSFSKLVAEF 1456 (1470)
Q Consensus 1434 E~g~p~~Ll~~~~s~f~~lv~~~ 1456 (1470)
|.|+.+++++++...|.+..-..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999999988887654433
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=344.22 Aligned_cols=208 Identities=27% Similarity=0.432 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999987 35799
Q ss_pred EEccCCCCCc---ccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1299 IIPQDPMLFQ---GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1299 iIpQdp~LF~---gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
|+||+|.++. .|+++|+......+++++.++++.+++.+.... + ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-------P----MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-------C----hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 388998754334567789999999998776533 2 3469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~l 1452 (1470)
++|+|||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++ ++++.|+++++.++ ..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987643 7899999999999865 999999965 79999999998753 345544
Q ss_pred H
Q 000475 1453 V 1453 (1470)
Q Consensus 1453 v 1453 (1470)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 3
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=316.57 Aligned_cols=213 Identities=28% Similarity=0.410 Sum_probs=185.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
+++.+++.+|.+ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+.+- +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999976 23489999999999999999999999999999999999999999999999999884 5678999999
Q ss_pred EccCCCCCcc-cHHHhcCcCC---CCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1300 IPQDPMLFQG-TVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IpQdp~LF~g-TIR~NLdp~~---~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
++-+.-++.- |.||||..|+ +.++. ++.+.-+..++.++. |..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHHH
Confidence 9966666654 9999998764 23333 455556666776664 44554 5999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
.++|+|++||||||+||.-|.+.+++.|++.. .+++||.-+|-++.+.. ||||+++.+|+++..|+++++.++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999998875 48999999999999985 9999999999999999999998754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=338.44 Aligned_cols=175 Identities=27% Similarity=0.408 Sum_probs=131.5
Q ss_pred EeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCC-CCCcccHHHhcCcCC--
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNLDPLE-- 1319 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp-~LF~gTIR~NLdp~~-- 1319 (1470)
+|..||.+|++||||-||||+++.|.|.++|++|. ..++ +++|=||-- .-|+|||++-|.--.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45678999999999999999999999999999998 2222 689999942 238999998874211
Q ss_pred CCCHHHHH-HHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000475 1320 QHSDQEIW-EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398 (1470)
Q Consensus 1320 ~~sd~eI~-~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~ 1398 (1470)
.+.+.-.+ +..+-.+|.+ -+|.+| .+|||||.||+++|-||.|++++.+||||+|.||.+-.-.+-++
T Consensus 429 ~~~~s~~~~ei~~pl~l~~-------i~e~~v----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLED-------LLERPV----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcCccchHH-------HHhccc----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 12222221 2222233322 234455 46999999999999999999999999999999999999999999
Q ss_pred HHHh--cCCcEEEEEecChhhhhh-cCEEEEEeC--CEEEEecChhHHh
Q 000475 1399 IREE--TSRCTVITVAHRIPTVID-NDLVLVLDE--GKVLEYDSPRQLL 1442 (1470)
Q Consensus 1399 I~~~--~~~~TVI~IAHRl~ti~~-~DrIlvL~~--G~vvE~g~p~~Ll 1442 (1470)
||+. ..++|.++|-|++-.+.- +||++|.+. |+=-....|..+.
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 9874 367899999999998755 999999973 2222233455554
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.23 Aligned_cols=185 Identities=24% Similarity=0.353 Sum_probs=164.0
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEEcCEeCCCCCHHHH-hcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGRILIDGVDISMIGLQDL-RSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl--~~p~~G~I~IDG~dI~~i~l~~L-R~~ 1296 (1470)
++++|++++|+. .++++|+||++++||.+||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999998876654 567
Q ss_pred cEEEccCCCCCcc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999886 5666550 0 11369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh--hcCEEEEEeCCEEEEecChhHHh
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI--DNDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~--~~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
+||+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998764 3789999999999988 59999999999999999 56665
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=309.54 Aligned_cols=197 Identities=26% Similarity=0.411 Sum_probs=167.6
Q ss_pred EEEeeeEEEeCCCccccCCCcccccCceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~---------- 660 (1470)
+.+++++|+|+.. ...+ ++.|++||++||+||+||||||||+.|+|...|.+|++ .++|.
T Consensus 2 l~L~~V~~~y~~~-------~~~f--dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL-------PMRF--DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc-------eEEE--EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 4567889998743 1111 58999999999999999999999999999999999996 88774
Q ss_pred -eEEEcCCCCCCC-ccHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHH
Q 000475 661 -KAYVPQSSWIQT-GTIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1470)
Q Consensus 661 -~ayv~Q~~~i~~-~Ti~eNI~~g~~-------~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1470)
+++++|+..+|. .||++||-+|.. .+.++.+.++...+|....+.+| .+|||||||||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHH
Confidence 689999999986 699999999953 24566777778888887777766 4899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHHh
Q 000475 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 732 ARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
||++.++-+|+|||||||||||.-+.+... ++..+. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++..
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999998777654 344333 47899999999998765 99999999999999999999886
Q ss_pred h
Q 000475 809 D 809 (1470)
Q Consensus 809 ~ 809 (1470)
.
T Consensus 220 ~ 220 (231)
T COG3840 220 G 220 (231)
T ss_pred c
Confidence 3
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=342.85 Aligned_cols=203 Identities=23% Similarity=0.343 Sum_probs=169.0
Q ss_pred EEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEEcCEeCCCCCHHHHh
Q 000475 1220 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR 1294 (1470)
++|+||+++|+.. .+++++|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cccEEEccCCCCCcc-cHHHhcCcC---C--CCCHH-----HHHH-HHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1295 SRLSIIPQDPMLFQG-TVRTNLDPL---E--QHSDQ-----EIWE-VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~g-TIR~NLdp~---~--~~sd~-----eI~~-aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 999999999999988 999999632 1 11111 1222 344443322 22233467999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh-hhhh-hcCEEEEEeCCEEEEec
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRI-PTVI-DNDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl-~ti~-~~DrIlvL~~G~vvE~g 1436 (1470)
||++|||||+++|++|+|||||++||+.+...+.+.|++.. +++|+|+++|++ ..+. .||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 478999999998 4554 59999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=327.70 Aligned_cols=193 Identities=31% Similarity=0.398 Sum_probs=156.5
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++..|.... .....|++ ||+|++||+++|+||+||||||||++|.|...|++|.+ .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 56788888887541 22567899 99999999999999999999999999999999999986 7777
Q ss_pred -------EeEEEcCCCC-CCCccHHHHHhcCCCC----C---HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 -------KKAYVPQSSW-IQTGTIRENILFGKDM----R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 -------~~ayv~Q~~~-i~~~Ti~eNI~~g~~~----~---~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.+|||+|+.. +++.|++|||.+...+ . .++.++.++..+|.+... ..++.+||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHH
Confidence 2699999966 5778999999964221 1 233344444444443222 2457799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 798 (1470)
|||||||||||+.+|+++|.||||.+||.++++.+++-+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999875443322 378999999999999999999999999954
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=347.96 Aligned_cols=208 Identities=25% Similarity=0.376 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHh-ccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1297 (1470)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 58999999999633 459999999999999999999999999999999999999999999999998752 233 469
Q ss_pred EEEccCCCC---CcccHHHhcCcC--------C---CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHH
Q 000475 1298 SIIPQDPML---FQGTVRTNLDPL--------E---QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363 (1470)
Q Consensus 1298 siIpQdp~L---F~gTIR~NLdp~--------~---~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQ 1363 (1470)
+|+||+|.+ +..++++|+... . ...++.+.++++..++.+.. |+.+ .+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHHH
Confidence 999999865 456889987521 0 11234567788888886643 3333 469999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHH
Q 000475 1364 LVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1364 rl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998764 47899999999998865 9999777 8999999999998
Q ss_pred hh
Q 000475 1442 LE 1443 (1470)
Q Consensus 1442 l~ 1443 (1470)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=336.93 Aligned_cols=200 Identities=23% Similarity=0.362 Sum_probs=170.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC----CHHHHhc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQDLRS 1295 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1295 (1470)
+++ |++++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 355 899999753 24 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred ccEEEccCCCCCcc-cHHHhcCcC-CCC----CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDPL-EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp~-~~~----sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++|+||++.+|.+ |+++|+... ..+ .++++.++++..++.+... ....+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 99999999999865 999999642 211 2345677788777755432 234579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
|++++|++|+|||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988642 7899999999999865 9999999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=341.60 Aligned_cols=214 Identities=29% Similarity=0.368 Sum_probs=188.7
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+.. ....+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 18 ~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~ 90 (257)
T cd03288 18 GEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLPL 90 (257)
T ss_pred ceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCCH
Confidence 469999999999742 2357889 99999999999999999999999999999999999986 6655
Q ss_pred -----EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHH
Q 000475 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1470)
.++|++|+|+++++|++||+........+.+.++++..++.+.++.+|.|.++.+++.+.+||||||||++||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 379999999999999999998764444556677778888888899999999999999999999999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHhhc
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1470)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 810 (1470)
++++|++++|||||++||+++...+++ ++..+.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 999999999999999999998776654 555555689999999999998889999999999999999999887633
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=337.03 Aligned_cols=210 Identities=29% Similarity=0.467 Sum_probs=185.0
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 47899999999632 357889 99999999999999999999999999999999999986 6665
Q ss_pred ----EeEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1470)
.++|++|+++++..|++||+.++.+. ..++.++.++.+++.+.++.+|.|..+..+.+..+|||||||||+||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 37999999999888999999987543 3455666777888888888999888888889999999999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHh
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.++.||+|++|++|++.+.|+++++..
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999888765 4555556899999999999988899999999999999998877754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=332.58 Aligned_cols=190 Identities=25% Similarity=0.315 Sum_probs=161.9
Q ss_pred cEEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEEcCEeCCCCCHHHH
Q 000475 1219 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDL 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~L 1293 (1470)
.+.++|++|.|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46799999999753 4579999999999999999999999999999999999999 89999999999998764 457
Q ss_pred hcccEEEccCCCCCcc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHc
Q 000475 1294 RSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372 (1470)
Q Consensus 1294 R~~isiIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1372 (1470)
|++++|+||++.+|.+ |+++|+...... . .+.. ...||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~~~----~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GNEF----VRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cccc----hhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 2222 3469999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEe-cChhhhh-hcCEEEEEeCCEEEEec
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVA-HRIPTVI-DNDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1373 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IA-HRl~ti~-~~DrIlvL~~G~vvE~g 1436 (1470)
++|++|+|||||++||+++.+.+.+.|++..+ ++|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 46766655 5566765 59999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.68 Aligned_cols=182 Identities=27% Similarity=0.415 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeCCC----CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEEcCEeCCCCCHHH
Q 000475 1219 KIELENLLVQYNPT----LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~----~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~ 1292 (1470)
.|+++|++++|+.. ..++|+|+||++++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcccEEEccCCCCCcc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHH
Q 000475 1293 LRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1293 LR~~isiIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1371 (1470)
.|++++++||++.+|.+ |+++|+... . .. + .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~---~~-------------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------A---KL-------------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------H---Hh-------------c--------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 999998421 0 00 0 6999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhh-cCEEEEEeCCEEEEec
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIP-TVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1372 Lr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~-ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
+++|++++|||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 4799999999997 4544 9999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=327.66 Aligned_cols=172 Identities=27% Similarity=0.481 Sum_probs=156.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH-HHHhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1297 (1470)
.|+++|++++| +|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999998874 4578899
Q ss_pred EEEccCC----CCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1298 SIIPQDP----MLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1298 siIpQdp----~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864210 99999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEE
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~v 1432 (1470)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999764 47999999999999977 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=341.97 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEEcCEeCCCCCHHHHhc-
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSGGRILIDGVDISMIGLQDLRS- 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl--~~p~~G~I~IDG~dI~~i~l~~LR~- 1295 (1470)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEccCCCCCcc-cHHHhcCcC-C------C---CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChh
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDPL-E------Q---HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp~-~------~---~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgG 1360 (1470)
.++++||+|.+|.+ |+++|+... . . .+ .+++.++|+.+++.+. .++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhccccc---cCCCHH
Confidence 58999999999987 789987531 1 0 01 1335567777776421 1233332 249999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCEEEEEeCCEEEEecC
Q 000475 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID--NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1361 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~--~DrIlvL~~G~vvE~g~ 1437 (1470)
||||++|||||+++|+||+|||||++||..+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998764 47999999999999875 89999999999999999
Q ss_pred hhHH
Q 000475 1438 PRQL 1441 (1470)
Q Consensus 1438 p~~L 1441 (1470)
|+.+
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9843
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.89 Aligned_cols=211 Identities=32% Similarity=0.476 Sum_probs=182.8
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|+++.|+.. ...+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4688999999643 22467889 99999999999999999999999999999999999986 6665
Q ss_pred ---EeEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHH
Q 000475 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1470)
Q Consensus 660 ---~~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1470)
.++|++|++.+++.|++||+.++... ..+...+.++.+++.+.++.+|.|..+..+....+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 37999999998888999999987543 33445566777788777888888888888888999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHh
Q 000475 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
+.+|+++||||||++||+++...+.+ ++..+.+++|+|++||+++++..||+|++|++|++++.|+.+++..
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQE-ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999887765 4544447899999999999988899999999999999998887765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.98 Aligned_cols=210 Identities=31% Similarity=0.490 Sum_probs=183.9
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4688999999643 2357888 99999999999999999999999999999999999986 6665
Q ss_pred ---EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHH
Q 000475 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1470)
Q Consensus 660 ---~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1470)
.++|++|++++++.|++||+.++.+ .....+.+.++.+.+.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 2799999999998999999998754 344556666777788888889988888888899999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHh
Q 000475 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
+.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999999887765 5655556899999999999988899999999999999999888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=325.60 Aligned_cols=177 Identities=32% Similarity=0.525 Sum_probs=161.1
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEE
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1300 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiI 1300 (1470)
+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3599999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000475 1301 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380 (1470)
Q Consensus 1301 pQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlL 1380 (1470)
|| +++.+++.++... .+.+||+|||||++||||++++|++++|
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888765432 2357999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1381 DEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1381 DEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
||||++||+++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 7899999999999855 9999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=339.18 Aligned_cols=206 Identities=22% Similarity=0.346 Sum_probs=170.8
Q ss_pred ceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEEcCEeCCCCCHHHHhcccEEEccCCC-CCc--
Q 000475 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLRSRLSIIPQDPM-LFQ-- 1308 (1470)
Q Consensus 1236 vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~-LF~-- 1308 (1470)
+++|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 343
Q ss_pred ccHHHhcCc----CCCC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000475 1309 GTVRTNLDP----LEQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381 (1470)
Q Consensus 1309 gTIR~NLdp----~~~~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLD 1381 (1470)
-|+++|+.. .+.. .++++.++++.+++.+. +........+||+|||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888631 1111 23457788888887521 01122334579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 000475 1382 EATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1382 EaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s~f~~ 1451 (1470)
|||++||..+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998643 7899999999999975 9999999999999999999998766555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=334.46 Aligned_cols=193 Identities=25% Similarity=0.348 Sum_probs=165.1
Q ss_pred EEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH----HHHhccc
Q 000475 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSRL 1297 (1470)
Q Consensus 1222 ~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~~i 1297 (1470)
++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 359999999999999999999999999999999999999999999999999875542 2467899
Q ss_pred EEEccCCCCCc-ccHHHhcCcC---CC----CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPL---EQ----HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~---~~----~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
+++||+|.+|. .|+++|+... .. ..++++.++++..++.+.. |.. ..+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-------KQK----IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-------cCC----hhhCCHHHHHHHHHHH
Confidence 99999999997 5999999641 11 1245577788888875543 222 3569999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEE
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL 1427 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL 1427 (1470)
||+++|++|+|||||++||+++.+.+.+.|++.. ++.|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 478999999999988779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=334.68 Aligned_cols=209 Identities=33% Similarity=0.535 Sum_probs=183.0
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1470)
++++|++++|+.+ ...+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|.
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4688999999632 357888 99999999999999999999999999999999999986 77662
Q ss_pred ----eEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHH
Q 000475 661 ----KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1470)
Q Consensus 661 ----~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1470)
++|++|++++++.|++||+.++.. .......+.++.+++.+.++.++.|..+.++.++.+||||||||++|||||
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 799999999999999999998754 233445566777888888899999988989999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHHh
Q 000475 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
+++|+++||||||++||+++...+.+ ++..+.+++|+|++||+++.+..||++++|++|++.+.|+.+++..
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999887765 4555445899999999999998899999999999999998888765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.00 Aligned_cols=205 Identities=29% Similarity=0.398 Sum_probs=182.5
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.. ..+.+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 37899999999743 2467899 99999999999999999999999999999999999986 6655
Q ss_pred ----EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1470)
.++|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++.+.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 3699999999998999999987766666667777888889888899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000475 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 736 ~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 802 (1470)
+.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999877765 4555556789999999999998899999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=319.21 Aligned_cols=164 Identities=34% Similarity=0.422 Sum_probs=150.6
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+.+ +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999644 45999999999999999999999999999999999999999999999983 68999
Q ss_pred EccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000475 1300 IPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILl 1379 (1470)
+||+|.++++|+++|+... ....||+|||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999998642 235799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCEEEEEeCCE
Q 000475 1380 LDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGK 1431 (1470)
Q Consensus 1380 LDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~~DrIlvL~~G~ 1431 (1470)
|||||++||+++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 589999999999877899999998864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=328.88 Aligned_cols=181 Identities=23% Similarity=0.320 Sum_probs=160.1
Q ss_pred cEEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEEcCEeCCCCCHHHHh
Q 000475 1219 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR 1294 (1470)
.|+++|++++|+++ ..++|+|+||++++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cccEEEccCCCCCcc-cHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1295 SRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1295 ~~isiIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
++++++||+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998621 0000 699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCEEEEEeC-CEEEEec
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDE-GKVLEYD 1436 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t-i-~~~DrIlvL~~-G~vvE~g 1436 (1470)
+|++|+|||||+++|+++...+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999764 47999999999984 4 55999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=353.42 Aligned_cols=202 Identities=27% Similarity=0.401 Sum_probs=168.7
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.++++|++++|+.+ ...+++ ||++++|++++|+|||||||||||++|+|+.+|++|++ .++|.
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 37899999999422 357888 99999999999999999999999999999999999996 77763
Q ss_pred ---eEEEcCCCCCC-CccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 661 ---KAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 661 ---~ayv~Q~~~i~-~~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
+|||+|++.++ +.||+|||.|+... +. ++.+++++..++.+.. +....+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLL-----------DRKPRELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHH
Confidence 79999999987 46999999998542 21 2344555555554332 355679999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhhH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 806 (1470)
+|||||+.+|+++|||||||+||+.+...+.+.+ +.+. + +.|+|+||||++++. .||+|++|++|++++.|+++++
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999988887654 4333 2 789999999999876 4999999999999999999998
Q ss_pred Hhhch
Q 000475 807 IADQN 811 (1470)
Q Consensus 807 ~~~~~ 811 (1470)
..++.
T Consensus 223 ~~~p~ 227 (356)
T PRK11650 223 YEKPA 227 (356)
T ss_pred HhCCc
Confidence 76443
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=338.73 Aligned_cols=205 Identities=23% Similarity=0.328 Sum_probs=175.4
Q ss_pred EEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEE
Q 000475 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1300 (1470)
Q Consensus 1221 ~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiI 1300 (1470)
+++||++. .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56777774 27999999999999999999999999999999999985 599999999999988888888899999
Q ss_pred ccCCC-CCcccHHHhcCcCCC--CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1301 PQDPM-LFQGTVRTNLDPLEQ--HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1301 pQdp~-LF~gTIR~NLdp~~~--~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
||+|. .+..|+++|+..... .+ ++++.++++..++.+.. +. ....||+|||||++|||||++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-------GR----SVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-------cC----CcccCCHHHHHHHHHHHHHhc
Confidence 99985 456799999974321 11 23566777777775433 22 235699999999999999997
Q ss_pred -------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1374 -------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1374 -------~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
+|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998764 47899999999998765 99999999999999999999875
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=331.83 Aligned_cols=199 Identities=32% Similarity=0.484 Sum_probs=171.8
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|.+|+|+++ .+.+++ |+++++|+.++|+|+||||||||++++.|.++|++|.+ .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 47899999999853 578889 99999999999999999999999999999999999987 6655
Q ss_pred -----EeEEEcCCC--CCCCccHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 -----KKAYVPQSS--WIQTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 -----~~ayv~Q~~--~i~~~Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
++|||+|+| .++..||.|.+.||... . +++.+++++.|++.+..+ ....+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcc
Confidence 379999999 57889999999999642 2 245566777787765533 4567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
||||+||.+|..+|++++||||||+||+...+.+.+. +..+. . ++|+|++|||++.+.. ||++++|++|+++.+|+
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~-l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL-LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 9999999999999999999999999999998888764 44443 3 5899999999999876 99999999999999999
Q ss_pred hhhHHh
Q 000475 803 YEDLIA 808 (1470)
Q Consensus 803 ~~~l~~ 808 (1470)
++++.+
T Consensus 223 p~~i~~ 228 (235)
T COG1122 223 PAEIFN 228 (235)
T ss_pred HHHHhh
Confidence 988876
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=319.45 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=166.7
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..|+++|++..|+.+ ...|++ ||+|++||+++|+|++||||||||++|.|..+|++|++ .++|
T Consensus 2 ~~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-Eecccchhccch
Confidence 358999999999843 578899 99999999999999999999999999999999999986 6666
Q ss_pred --------EeEEEcCCCCC-CCccHHHHHhcCCCC------------CHHHHHHHH---HHhcchHHHHhccCCCccccc
Q 000475 660 --------KKAYVPQSSWI-QTGTIRENILFGKDM------------RQSFYEEVL---EGCALNQDIEMWADGDLSVVG 715 (1470)
Q Consensus 660 --------~~ayv~Q~~~i-~~~Ti~eNI~~g~~~------------~~~~y~~v~---~~~~l~~d~~~l~~g~~t~ig 715 (1470)
++||++|++-| +..||.+|++.|+-- .++....++ +..++.+ ..-
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-----------~A~ 142 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-----------KAY 142 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-----------HHH
Confidence 36999999876 567999999988532 222222222 2223222 223
Q ss_pred CCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhh-hcCEEEEEe
Q 000475 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMK 793 (1470)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~ 793 (1470)
.+..+|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++... +||||+-|+
T Consensus 143 qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 143 QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred HHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 5778999999999999999999999999999999999999999987654322 35899999999999975 599999999
Q ss_pred CCEEEEecChhhHHh
Q 000475 794 DGKIEQSGKYEDLIA 808 (1470)
Q Consensus 794 ~G~i~~~g~~~~l~~ 808 (1470)
+|+|+++|+.+|+.+
T Consensus 223 ~G~ivfDg~~~el~~ 237 (258)
T COG3638 223 AGRIVFDGPASELTD 237 (258)
T ss_pred CCcEEEeCChhhhhH
Confidence 999999999998644
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=349.26 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=167.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
|+++|++++|+..+ .....+++ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999996420 12467899 99999999999999999999999999999999999986 6655
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++|||.++.. .+. ++..++++..+|.+. .+..+.+|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-----------~~~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK-----------HDSYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHH
Confidence 3799999998874 799999998643 222 222334444444322 335677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
||||+|||||..+|+++|||||||+||+.+...+.+. ++.+. + +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999888764 44443 2 7899999999999865 99999999999999999
Q ss_pred hhhHHhhch
Q 000475 803 YEDLIADQN 811 (1470)
Q Consensus 803 ~~~l~~~~~ 811 (1470)
++++...+.
T Consensus 225 ~~~v~~~p~ 233 (343)
T TIGR02314 225 VSEIFSHPK 233 (343)
T ss_pred HHHHHcCCC
Confidence 999876433
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=356.13 Aligned_cols=229 Identities=24% Similarity=0.419 Sum_probs=192.9
Q ss_pred cEEEEeEEEEeCCCCC--cceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CcEEEEcCEeCCCCCHHH
Q 000475 1219 KIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS----GGRILIDGVDISMIGLQD 1292 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~----~G~I~IDG~dI~~i~l~~ 1292 (1470)
-++++|+++.|..... .+++||||++.+||.+||||.|||||||+.++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999965432 5999999999999999999999999999999999999987 899999999999999876
Q ss_pred Hh----cccEEEccCCC-CCcc--cHHHhcCc----CC----CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCC
Q 000475 1293 LR----SRLSIIPQDPM-LFQG--TVRTNLDP----LE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW 1357 (1470)
Q Consensus 1293 LR----~~isiIpQdp~-LF~g--TIR~NLdp----~~----~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nL 1357 (1470)
.| ++|++|||||. .++- ||.+-+.- .. +...++..+.|+.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 57999999995 4443 55555431 11 1134457778888887554332 2234679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000475 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1358 SgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE 1434 (1470)
|||||||+.||+||..+|++||+||||.+||+.|.++|.+.|++.. .+.++|+|||++..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 68999999999999987 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHHH
Q 000475 1435 YDSPRQLLEDNSSSFSKLVAEF 1456 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~f~~lv~~~ 1456 (1470)
.|+++++++++...|.+..-+.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh
Confidence 9999999999988886655433
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=329.08 Aligned_cols=204 Identities=33% Similarity=0.511 Sum_probs=178.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|+++.|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 37899999999642 2457889 99999999999999999999999999999999999986 6766
Q ss_pred ----EeEEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1470)
.++|++|+++++..|++||+.++.. ..+++..+.++.+++.+.++..|.|..|.+.+...+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 3799999999888899999988754 34456677888888988888999999898888899999999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 801 (1470)
+..+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++..||+|++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKE-RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999887765 455554558999999999988779999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=352.14 Aligned_cols=192 Identities=29% Similarity=0.377 Sum_probs=159.5
Q ss_pred cccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-----------------EeEEEcCCCCCCC
Q 000475 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1470)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-----------------~~ayv~Q~~~i~~ 672 (1470)
...+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++| .++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 456888 99999999999999999999999999999999999986 6655 4799999999986
Q ss_pred -ccHHHHHhcCCCC---C-HHHHH---HHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEE
Q 000475 673 -GTIRENILFGKDM---R-QSFYE---EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1470)
Q Consensus 673 -~Ti~eNI~~g~~~---~-~~~y~---~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lL 744 (1470)
.||+|||.|+.++ + +++.+ ++++..+|+. ..++.+.+|||||||||+|||||+.+|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-----------~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-----------YEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6999999987543 1 22233 3344444432 24567789999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhhHHhhchhHH
Q 000475 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1470)
Q Consensus 745 Dep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 814 (1470)
||||||||+.++.++++.+..... .++|+|+|||+++++. .||+|++|++|++++.|+++++......++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 999999999999999876654333 3899999999999865 499999999999999999999886443333
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=334.09 Aligned_cols=190 Identities=27% Similarity=0.379 Sum_probs=163.2
Q ss_pred eeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCc-ccHHHhc
Q 000475 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTNL 1315 (1470)
Q Consensus 1237 Lk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~-gTIR~NL 1315 (1470)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CcC-----CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCC
Q 000475 1316 DPL-----EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386 (1470)
Q Consensus 1316 dp~-----~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTss 1386 (1470)
... ...++ +++.++++.+++.+... .. ...||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-------KR----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-------CC----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 532 22332 23667788887765432 22 346999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1387 IDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1387 lD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998764 37899999999999876 9999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=323.29 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-HhcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~is 1298 (1470)
.+.+|++.+|.. -.+++||||++++||.+||+|||||||||+++++.|+|+|++|+|.++|.||..++.+. -|..|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 578999999964 35999999999999999999999999999999999999999999999999999999988 477788
Q ss_pred EEccCCCCCcc-cHHHhcCcCCC-------------C--C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLEQ-------------H--S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~~~-------------~--s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
--.|.+-+|++ |+-||+.-... + . .++-.+.|+.++|.+.. .+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcCC
Confidence 89999999988 99999853210 1 1 23345566666665543 33345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCEEEEEeCCEEEEe
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~--~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~ 1435 (1470)
+||+.||-|||||..+|++|+||||.|+|.+.-...+.+.|++..+ +.||++|-||++.+++ ||||+||+.|+++..
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999999999999998764 4899999999999998 999999999999999
Q ss_pred cChhHHhhcC
Q 000475 1436 DSPRQLLEDN 1445 (1470)
Q Consensus 1436 g~p~~Ll~~~ 1445 (1470)
|+|++..+|+
T Consensus 232 G~P~eV~~dp 241 (250)
T COG0411 232 GTPEEVRNNP 241 (250)
T ss_pred CCHHHHhcCH
Confidence 9999999876
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=335.06 Aligned_cols=191 Identities=27% Similarity=0.405 Sum_probs=160.4
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEc-cCCCCC-cccH
Q 000475 1234 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP-QDPMLF-QGTV 1311 (1470)
Q Consensus 1234 ~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIp-Qdp~LF-~gTI 1311 (1470)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 667776 4599
Q ss_pred HHhcCcC---CCCCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000475 1312 RTNLDPL---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384 (1470)
Q Consensus 1312 R~NLdp~---~~~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaT 1384 (1470)
++|+... ...+++ .+.++++..++.+. +|+.+ ..||+|||||++|||||+++|++|+|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998532 122332 34455666666433 34444 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1385 ASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1385 sslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
++||+++.+.+.+.|++.. .++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999864 37899999999999866 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=324.52 Aligned_cols=194 Identities=26% Similarity=0.393 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987643 568899999
Q ss_pred EccCCCCC-cccHHHhcCcC-CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000475 1300 IPQDPMLF-QGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1300 IpQdp~LF-~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1377 (1470)
+||++.++ ..|+++|+... ....++++.++++..++.++. +..+ .+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-------DRPV----AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-------cCch----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 57999999653 234677888999999987543 2232 46999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh-hcCEEEEE
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVI-DNDLVLVL 1427 (1470)
Q Consensus 1378 LlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~-~~DrIlvL 1427 (1470)
|+|||||++||+.+.+.+.+.|++.. +++|+|++||+...+. .||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998753 4799999999877664 59999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=372.90 Aligned_cols=216 Identities=23% Similarity=0.323 Sum_probs=147.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHh------cCCC----C-----------CCcE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALF------RVVE----P-----------SGGR 1277 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~------rl~~----p-----------~~G~ 1277 (1470)
.++++|++. ..|+|+|++|++||.+||+|++|||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488888862 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEEcCEeCCC---------CC-HHHHhcccEEEccC------CCCCcc--------------cHHHhc--Cc--------
Q 000475 1278 ILIDGVDISM---------IG-LQDLRSRLSIIPQD------PMLFQG--------------TVRTNL--DP-------- 1317 (1470)
Q Consensus 1278 I~IDG~dI~~---------i~-l~~LR~~isiIpQd------p~LF~g--------------TIR~NL--dp-------- 1317 (1470)
|.||-.+|.. .+ .+.+|.-++=.|+- +-.|+- .+.-++ +|
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 5666655543 12 23466666665542 333431 111111 10
Q ss_pred --CCCCCHHH---------HHHHHHHc--CcHHHHHhcc-----------cccCc-cccCCCCCCChhHHHHHHHHHHHc
Q 000475 1318 --LEQHSDQE---------IWEVINKC--HLAEIVRQDQ-----------RLLDA-PVAEDGENWSVGQRQLVCLARVLL 1372 (1470)
Q Consensus 1318 --~~~~sd~e---------I~~aL~~~--~L~~~v~~lp-----------~gLdt-~v~e~G~nLSgGQrQrl~LARALL 1372 (1470)
...+.++- |-++|+.. ...+|+..++ -||+. ..+.....||||||||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 01111110 11111110 0111222211 14544 356677889999999999999999
Q ss_pred c---CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEE------eCCEEEEecChhHH
Q 000475 1373 K---KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL------DEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1373 r---~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL------~~G~vvE~g~p~~L 1441 (1470)
+ +|+++||||||++||+.+...+++.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 489999999999999999999999998864 578999999999999889999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=336.28 Aligned_cols=210 Identities=20% Similarity=0.277 Sum_probs=168.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEEcCEeCCCCCHHHHh-cc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLR-SR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR-~~ 1296 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 35999999999999999999999999999999999995 69999999999999887776654 57
Q ss_pred cEEEccCCCCCcc-cHHHhcC-------cCCC---CC----HHHHHHHHHHcCcHHHHHhccccc-CccccCCCCCCChh
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLD-------PLEQ---HS----DQEIWEVINKCHLAEIVRQDQRLL-DAPVAEDGENWSVG 1360 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLd-------p~~~---~s----d~eI~~aL~~~~L~~~v~~lp~gL-dt~v~e~G~nLSgG 1360 (1470)
++++||+|.++.. |..+++. .... .. ++.+.+.++..++ |+++ +..+ ..+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~---~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV---NVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC---CCCCCHH
Confidence 9999999987764 4444432 1110 01 1112223333322 2222 2222 1369999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh--cCEEEEEeCCEEEEecC
Q 000475 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS-RCTVITVAHRIPTVID--NDLVLVLDEGKVLEYDS 1437 (1470)
Q Consensus 1361 QrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~-~~TVI~IAHRl~ti~~--~DrIlvL~~G~vvE~g~ 1437 (1470)
||||++||||++++|+||+|||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999987643 6899999999999987 89999999999999999
Q ss_pred hhHH
Q 000475 1438 PRQL 1441 (1470)
Q Consensus 1438 p~~L 1441 (1470)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=299.35 Aligned_cols=198 Identities=26% Similarity=0.429 Sum_probs=175.0
Q ss_pred EeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCCC
Q 000475 1228 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307 (1470)
Q Consensus 1228 ~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF 1307 (1470)
+|.....++|+++||++++||.++|.||||||||||++.+.-+..|++|+++..|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 56555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHhcC-cC---C-CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000475 1308 QGTVRTNLD-PL---E-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382 (1470)
Q Consensus 1308 ~gTIR~NLd-p~---~-~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1382 (1470)
.+||.+||- |. + ..+...-.+-|+++++.+.+ |+. +..+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~------L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI------LTK----NITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhh------hcc----hhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999985 43 2 23444556677777776654 333 345799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh-hhhcCEEEEEeCCEEEEe
Q 000475 1383 ATASIDTATDNVIQQTIREET--SRCTVITVAHRIPT-VIDNDLVLVLDEGKVLEY 1435 (1470)
Q Consensus 1383 aTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~t-i~~~DrIlvL~~G~vvE~ 1435 (1470)
+||+||+.+.+.|.+.|..++ ++..|+.|||+.+. +..+||++.+-.|++-|.
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 999999999999999999887 57899999999998 778999999999986543
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=367.23 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHh-ccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1297 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..+.+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999888777655 579
Q ss_pred EEEccCCCCCcc-cHHHhcCcCCC-C--CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLEQ-H--SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~~-~--sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
+|+||++.+|.+ |+++|+..... . .++++.++++..++.+. ++..+ .+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSA----GSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCCh----hhCCHHHHHHHHHHHHHHc
Confidence 999999988876 99999974321 1 23456677777776432 23333 4699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
+|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998753 47899999999999876 99999999999999999998865
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=343.12 Aligned_cols=206 Identities=27% Similarity=0.432 Sum_probs=167.4
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1470)
+..++++|++|+|+.... ...+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE---NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 356999999999974310 12358999 99999999999999999999999999999999999986 5543
Q ss_pred ----------------------EeEEEcCCC--CCCCccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccC
Q 000475 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWAD 708 (1470)
Q Consensus 660 ----------------------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~ 708 (1470)
.++||+|+| .+++.||+|||.|+.. .+.+ +.++.++.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------- 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD------- 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 269999998 6888999999999742 1222 2222333333321
Q ss_pred CCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhh-hc
Q 000475 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AA 786 (1470)
Q Consensus 709 g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~ 786 (1470)
...++.+.+||||||||++|||||..+|+++||||||++||+.+...+++. +..+ .+++|+|+|||+++++. .|
T Consensus 168 ---~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~-L~~l~~~g~TiiivtHd~~~~~~~a 243 (320)
T PRK13631 168 ---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL-ILDAKANNKTVFVITHTMEHVLEVA 243 (320)
T ss_pred ---hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhC
Confidence 234677889999999999999999999999999999999999998888764 4433 35899999999999875 59
Q ss_pred CEEEEEeCCEEEEecChhhHHh
Q 000475 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 787 d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
|+|++|++|++++.|+++++..
T Consensus 244 dri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999998875
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=346.91 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=167.9
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|.. ...+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 246888 99999999999999999999999999999999999986 7766
Q ss_pred --EeEEEcCCCCCCC-ccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++||+|++.++. .||+|||.|+... ++ ++.+++++..++.. ..+....+|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHH
Confidence 3699999998875 6999999998532 21 23333444444432 22456789999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhhH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 806 (1470)
+|||||+.+|+++|||||||+||+.+...+.+. ++.+.+ ++|+|+||||.+++. .||+|++|++|+|.+.|+++++
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999998888664 444433 799999999999875 5999999999999999999998
Q ss_pred HhhchhH
Q 000475 807 IADQNSE 813 (1470)
Q Consensus 807 ~~~~~~~ 813 (1470)
..++...
T Consensus 225 ~~~p~~~ 231 (351)
T PRK11432 225 YRQPASR 231 (351)
T ss_pred HhCCCch
Confidence 7644433
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=311.12 Aligned_cols=159 Identities=32% Similarity=0.553 Sum_probs=148.1
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH-HHhcccE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLS 1298 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR~~is 1298 (1470)
|+++|++++|+.. ++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999643 599999999999999999999999999999999999999999999999999988764 4678899
Q ss_pred EEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000475 1299 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRIL 1378 (1470)
Q Consensus 1299 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1378 (1470)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000475 1379 VLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1379 lLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE 1434 (1470)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998764 47899999999998865 99999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=313.82 Aligned_cols=204 Identities=26% Similarity=0.412 Sum_probs=170.1
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.++++|.++.|+... .....+++ ||++.+||.++|+|++|||||||.++|+|..+|++|++ .++|+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 578999999998652 12257888 99999999999999999999999999999999999997 78773
Q ss_pred ------eEEEcCCCCC---CCccHHHHHhcCCC-----CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 661 ------KAYVPQSSWI---QTGTIRENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 661 ------~ayv~Q~~~i---~~~Ti~eNI~~g~~-----~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
+-+|+|+|.- +..||++-|.-+.. ..+++..++++..+|.+.. ...+...|||||+
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHH
Confidence 5899999873 45699888765432 2234456677777776543 2356778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 803 (1470)
|||||||||..+|+++|||||||+||+.+...|++- +..+. .+-|.|+||||+..+.+ ||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~Ilnl-L~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL-LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHH-HHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 999999999999999999999999999999999864 44333 36699999999999987 999999999999999999
Q ss_pred hhHHhh
Q 000475 804 EDLIAD 809 (1470)
Q Consensus 804 ~~l~~~ 809 (1470)
+++...
T Consensus 227 ~~l~~~ 232 (252)
T COG1124 227 EELLSH 232 (252)
T ss_pred hhhhcC
Confidence 998763
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=382.94 Aligned_cols=207 Identities=27% Similarity=0.282 Sum_probs=147.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHH---------HHhcCCCCCC----c----EEEEc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ---------ALFRVVEPSG----G----RILID 1281 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~---------~L~rl~~p~~----G----~I~ID 1281 (1470)
.++++|++. ..|+|+|++|++||.+||+|++|||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 578888752 2699999999999999999999999999999 4445332211 1 24555
Q ss_pred CEeCCCCCH----------HHHhc---------ccE-----EEccC------------------C---------------
Q 000475 1282 GVDISMIGL----------QDLRS---------RLS-----IIPQD------------------P--------------- 1304 (1470)
Q Consensus 1282 G~dI~~i~l----------~~LR~---------~is-----iIpQd------------------p--------------- 1304 (1470)
-.+|..-+. +++|+ +.+ +..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 554443211 24551 111 11221 1
Q ss_pred -----CCCcc-cHHHhcCcCCC------CCHHHHHHH---HHHcCcHHHHHhcccccCcc-ccCCCCCCChhHHHHHHHH
Q 000475 1305 -----MLFQG-TVRTNLDPLEQ------HSDQEIWEV---INKCHLAEIVRQDQRLLDAP-VAEDGENWSVGQRQLVCLA 1368 (1470)
Q Consensus 1305 -----~LF~g-TIR~NLdp~~~------~sd~eI~~a---L~~~~L~~~v~~lp~gLdt~-v~e~G~nLSgGQrQrl~LA 1368 (1470)
+.+.+ ||.|||+.... .+.+++.+. |+.+ ||+.. .+....+||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 13334 77777754211 012223322 2222 34432 4555678999999999999
Q ss_pred HHHc---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEe------CCEEEEecCh
Q 000475 1369 RVLL---KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLD------EGKVLEYDSP 1438 (1470)
Q Consensus 1369 RALL---r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~------~G~vvE~g~p 1438 (1470)
|||+ ++|+++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998764 5789999999999997799999996 7999999999
Q ss_pred hHHhh
Q 000475 1439 RQLLE 1443 (1470)
Q Consensus 1439 ~~Ll~ 1443 (1470)
+++.+
T Consensus 902 eel~~ 906 (1809)
T PRK00635 902 EELIH 906 (1809)
T ss_pred HHHHh
Confidence 99986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=368.57 Aligned_cols=212 Identities=25% Similarity=0.387 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEcCEeCCCCCHHH-Hhc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDISMIGLQD-LRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI~~i~l~~-LR~ 1295 (1470)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999963 3599999999999999999999999999999999999996 8999999999998877655 467
Q ss_pred ccEEEccCCCCCcc-cHHHhcCcCC------CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDPLE------QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1296 ~isiIpQdp~LF~g-TIR~NLdp~~------~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
+++|+||+|.+|.. |+++|+.... ..+. +++.++++..++.+ -+|..+ .+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-------NPATPV----GNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-------Ccccch----hhCCHHHHHH
Confidence 89999999988875 9999997421 1121 34556666665532 223333 5699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
++|||||+++|+||+||||||+||+++...+.+.|++.. ++.|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998753 47899999999999876 9999999999999999988764
Q ss_pred h
Q 000475 1443 E 1443 (1470)
Q Consensus 1443 ~ 1443 (1470)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=304.16 Aligned_cols=503 Identities=16% Similarity=0.169 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000475 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHS-SYH-YGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1470)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~-~~~-~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1470)
.-.++|.+++.++....+.+.. ..++-.++-.+-+++-...... ..- .-..+...++++..+.. .--.+..+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~---g~~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~---lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLAS---GALGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQ---LGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3467778887777655444433 3334444544444443322200 110 01122222333333322 22223344
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000475 344 RIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1470)
Q Consensus 344 r~g~rir~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~~~~lL~~~lG~~~~l~~l~ 423 (1470)
....++|.-++..|...-+. .....+++.++.-++.|+..|.-.+..+.++-.+.+-+..++..|++.=+ ...+..++
T Consensus 78 ~~I~klr~~~~~kil~tple-rier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l~vV 155 (546)
T COG4615 78 HFIYKLRSEFIKKILDTPLE-RIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLLTVV 155 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence 44456666665554432221 01112788899999999999997777788777666666666666665544 77777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000475 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLL-RLREIERDSLKKYLYTCSA 500 (1470)
Q Consensus 424 ~~~i~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~ik~IK~~~wE~--~f~~~i~-~~R~~E~~~l~~~~~~~~~ 500 (1470)
.+++.+..+.....+..++..+..+..|+-.+..+.++.|-|.+|+..=.. .+.+.+. ..++.+-+.. +...+
T Consensus 156 ~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~----~~n~f 231 (546)
T COG4615 156 WIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHII----RANTF 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhh----hhhHH
Confidence 788888888888888888888888999999999999999999999876322 1222221 1122221111 11111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000475 501 -IAFLFWASPTLVSVITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1470)
Q Consensus 501 -~~~~~~~~p~~v~~~~f~~~~~~~~~L~-~~~vft~l~~~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~ 578 (1470)
+....|....+.+++....|+...-... ...+.|...++-.++.|+.+.-..++.+.+|.++++||.++=..|+..+.
T Consensus 232 ~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~ 311 (546)
T COG4615 232 HLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC
Confidence 1223344444444333332332222222 22444555556668999999999999999999999999998776553332
Q ss_pred CCCCCCCCCCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEE
Q 000475 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1470)
Q Consensus 579 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~ 657 (1470)
....+.+ +-..++++|+.|+|+++ .+.+.. |++|++||++-|+|.||||||||++.++|.++|++|++ .+
T Consensus 312 ~~~q~~p-~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I-~l 382 (546)
T COG4615 312 PRPQAFP-DWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI-LL 382 (546)
T ss_pred CCCCcCC-cccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce-eE
Confidence 2222222 23569999999999865 366666 99999999999999999999999999999999999996 88
Q ss_pred CCEe-------------EEEcCCCCCCCccHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 658 HGKK-------------AYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 658 ~g~~-------------ayv~Q~~~i~~~Ti~eNI~~g~~-~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
+|+- +-|+-+-|+|+.+ +-++. -.++..+.-++.-.+.+.. .+.+|..+ ...||-
T Consensus 383 dg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kLSt 451 (546)
T COG4615 383 DGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKLST 451 (546)
T ss_pred CCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----cccccc
Confidence 8852 2233344444322 11221 2334444444444443322 22333322 246999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1470)
|||.|+++--|+..+.|||+|||=-+-=||+-++..++..+-.+. .||||+.||||-.+...|||++.|++|++++.
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999999998888777664433 49999999999999999999999999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=330.89 Aligned_cols=197 Identities=29% Similarity=0.393 Sum_probs=161.0
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 467899999963 357889 99999999999999999999999999999999999986 5654
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~----~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+ .......+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 2699999988776 599999988632 122 12333444444432 123556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
|||||+||||+..+|+++||||||++||+.+...+.+. ++.+. .++|||+|||+++++.. ||+|++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 99999999999999999999999999999998887764 44443 37899999999998865 9999999999999999
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
+++++..
T Consensus 220 ~~~~~~~ 226 (235)
T cd03261 220 TPEELRA 226 (235)
T ss_pred CHHHHcC
Confidence 9888764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=369.31 Aligned_cols=212 Identities=20% Similarity=0.300 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-Hhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1297 (1470)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+... .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998877665 35679
Q ss_pred EEEccCCCCCcc-cHHHhcCcCC-------CC---C----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLE-------QH---S----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~-------~~---s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQr 1362 (1470)
+|+||++.+|.. |+++|+.... .. + ++++.++++.+++.+ .+|.++ .+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------Ccccch----hhCCHHHH
Confidence 999999988876 9999996321 10 1 134556666666532 234444 46999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhH
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQ 1440 (1470)
Q Consensus 1363 Qrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~ 1440 (1470)
||++|||||+++|+||+|||||++||+.+...+.+.|++.. ++.|||+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998753 47899999999999976 99999999999999999988
Q ss_pred Hhh
Q 000475 1441 LLE 1443 (1470)
Q Consensus 1441 Ll~ 1443 (1470)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=367.06 Aligned_cols=212 Identities=22% Similarity=0.343 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHH-Hhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1297 (1470)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999997766554 46789
Q ss_pred EEEccCCCCCcc-cHHHhcCcCC-------CCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLE-------QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1365 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~-------~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl 1365 (1470)
+|+||+|.+|.. |+++|+.... ..+. +++.++++.+++.+ .+|.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-------SSDKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-------CccCch----hhCCHHHHHHH
Confidence 999999988865 9999997421 1222 23455666665532 234444 46999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1366 CLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1366 ~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
+|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 47899999999999876 99999999999999999887643
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=346.23 Aligned_cols=205 Identities=29% Similarity=0.351 Sum_probs=169.0
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.++++|++++|+. ...+++ ||++++|++++|+|||||||||||++|+|..+|++|++ .++|+
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 246888 99999999999999999999999999999999999997 77763
Q ss_pred ---eEEEcCCCCCCC-ccHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 661 ---KAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 661 ---~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
++||+|++-+|. .||+|||.|+... + .++.+++++..+|.+ ....++.+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHH
Confidence 799999998874 7999999998532 2 223344444444432 23466789999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhhHH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 807 (1470)
+|||||+.+|+++|||||||+||+.+..++.+.+.+-.. .+.|+|+||||.+++. .||+|++|++|++++.|+++++.
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999998888664433222 2789999999999875 49999999999999999999998
Q ss_pred hhchhHH
Q 000475 808 ADQNSEL 814 (1470)
Q Consensus 808 ~~~~~~~ 814 (1470)
.++...+
T Consensus 224 ~~p~~~~ 230 (353)
T TIGR03265 224 RHPATPF 230 (353)
T ss_pred hCCCCHH
Confidence 7544343
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=323.33 Aligned_cols=194 Identities=24% Similarity=0.376 Sum_probs=168.2
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 35999999999999999999999999999999999999999999999999998654 457889999
Q ss_pred EccCCCCCc-ccHHHhcCcCC----CCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccC
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPLE----QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1374 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~~----~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1374 (1470)
+||++.++. .|+++|+.... ...++++.++++..++.++.. .. ...||+|||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~----~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-------VP----VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-------CC----hhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 59999996421 134567888999999876542 22 246999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEE
Q 000475 1375 KRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVL 1427 (1470)
Q Consensus 1375 ~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL 1427 (1470)
|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998763 47899999999999955 5677776
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=374.58 Aligned_cols=223 Identities=25% Similarity=0.358 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCC----------
Q 000475 1219 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS---------- 1286 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~---------- 1286 (1470)
-|+++|++++|+.. ..++|+||||++++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCCHH---HHh-cccEEEccCC--CCCcc-cHHHhcCcC----CCCC----HHHHHHHHHHcCcHHHHHhcccccCcccc
Q 000475 1287 MIGLQ---DLR-SRLSIIPQDP--MLFQG-TVRTNLDPL----EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVA 1351 (1470)
Q Consensus 1287 ~i~l~---~LR-~~isiIpQdp--~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~ 1351 (1470)
+.+.. .+| ++|++|||+| .++.. |+++|+... ...+ ++++.++|+.+++.+.- .-+|..+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~~~~- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILSRYP- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHhCCC-
Confidence 22222 344 5799999999 57764 999998631 1122 24566778888773210 1123333
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecChhhhhh-cCEEEEEe
Q 000475 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-S-RCTVITVAHRIPTVID-NDLVLVLD 1428 (1470)
Q Consensus 1352 e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~-~~TVI~IAHRl~ti~~-~DrIlvL~ 1428 (1470)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||+|+|+++.+.. ||||++|+
T Consensus 167 ---~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 167 ---HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4699999999999999999999999999999999999999999999864 2 7899999999999876 99999999
Q ss_pred CCEEEEecChhHHhhcCCChH
Q 000475 1429 EGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1429 ~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
+|++++.|+++++++++...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999987654444
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=346.16 Aligned_cols=202 Identities=28% Similarity=0.384 Sum_probs=167.8
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE-------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------- 660 (1470)
..++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|.
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 45899999999963 246888 99999999999999999999999999999999999996 77764
Q ss_pred ----eEEEcCCCCCC-CccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHH
Q 000475 661 ----KAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1470)
Q Consensus 661 ----~ayv~Q~~~i~-~~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 728 (1470)
++||+|++.++ ..||+|||.|+... .. ++.+++++..++...+ ..+..+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~p~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFA-----------QRKPHQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 79999999887 46999999998532 21 2334445555554333 34567999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhh
Q 000475 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 805 (1470)
|+|||||+.+|+++|||||||+||++....+.+. ++.+. .+.|+|+||||.+++. .||+|++|++|+|.+.|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999998877654 44443 3799999999999865 599999999999999999999
Q ss_pred HHhhch
Q 000475 806 LIADQN 811 (1470)
Q Consensus 806 l~~~~~ 811 (1470)
+..++.
T Consensus 232 i~~~p~ 237 (375)
T PRK09452 232 IYEEPK 237 (375)
T ss_pred HHhCcc
Confidence 876443
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.34 Aligned_cols=197 Identities=40% Similarity=0.746 Sum_probs=173.6
Q ss_pred EEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-----------
Q 000475 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1470)
Q Consensus 592 ~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g----------- 659 (1470)
.+.|+.|+|+.+ .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 467899999753 457889 99999999999999999999999999999999999986 5533
Q ss_pred ------EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHH
Q 000475 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1470)
.++|++|+|.+++.|++||+.++.+.+.++.+++++.+++.+.++..|.|+++.++....+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 47999999999889999999998766666677888999998888888999999899999999999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHH-HHHhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCE
Q 000475 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1470)
Q Consensus 734 Al~~~~~i~lLDep~saLD~~~~~~i~~~-~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~ 796 (1470)
|++.+|+++||||||++||+.+...+.+. ++.... .++|+|++||+.+.+..||++++|++|.
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999998887763 444433 3789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=337.27 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=167.1
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
|+++|++|+|+.... ...+.+++ ||++++||+++|+|+||||||||+++|.|.++|++|++ .++|
T Consensus 2 i~~~~v~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSP---FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 689999999974310 01357899 99999999999999999999999999999999999986 6665
Q ss_pred -------EeEEEcCCC--CCCCccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 -------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.++||+|+| .++..|+.||+.|+.. .. +++++++++..++.+++ .+....+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCH
Confidence 269999998 6788899999999753 11 12344555555553222 2356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 801 (1470)
|||||++|||||+.+|+++||||||++||+.+...+.+ ++..+. +++|||++||+++++. .||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999888775 454443 4899999999999986 49999999999999999
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9999865
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=363.80 Aligned_cols=212 Identities=18% Similarity=0.219 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 34999999999999999999999999999999999999999999999999888777778888999
Q ss_pred EEccCCCC--C-------cccHHHhcCcCCCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1299 IIPQDPML--F-------QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1299 iIpQdp~L--F-------~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
++||+|.+ + .-|+++|+... ...++++.++++..++.+.. |.++ ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALL-------DRRF----KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhh-------hCCc----ccCCHHHHHHHHHHH
Confidence 99999753 2 35899998642 12345678888888886543 3333 469999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998864 46899999999999877 999999999999999999998753
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.42 Aligned_cols=197 Identities=32% Similarity=0.440 Sum_probs=162.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999963 357889 99999999999999999999999999999999999986 6655
Q ss_pred -EeEEEcCCCCCCC-ccHHHHHhcCCCC-------CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~eNI~~g~~~-------~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++|++|+|.++. .|++||+.++... +. ++.++.++.+++.+ .......+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHH
Confidence 3799999998875 6999999986432 11 12223344444322 23456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 803 (1470)
||++||||++.+|+++||||||++||+++.+.+.+ ++..+. + ++|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 99999999999999999999999999999887765 455443 2 7899999999998765 999999999999999998
Q ss_pred hhHHh
Q 000475 804 EDLIA 808 (1470)
Q Consensus 804 ~~l~~ 808 (1470)
+++.+
T Consensus 222 ~~~~~ 226 (239)
T cd03296 222 DEVYD 226 (239)
T ss_pred HHHhc
Confidence 88764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=336.87 Aligned_cols=205 Identities=25% Similarity=0.376 Sum_probs=166.9
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.... ...+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTP---FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCc---cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 3789999999974310 01368999 99999999999999999999999999999999999986 6654
Q ss_pred ------EeEEEcCCC--CCCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 ------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++||+|+| .+++.|++|||.|+.. .+. ++.+++++.+++.. .+..+.++.+||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHH
Confidence 369999997 5678899999998742 222 22344555555531 12244667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 801 (1470)
||||++|||||+.+|+++||||||++||+.+...+++ ++..+. .++|||+|||+++++. .||+|++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999888865 455443 3789999999999986 59999999999999999
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 9988765
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=337.02 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=167.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+..+. ...+.|++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999974310 11458999 99999999999999999999999999999999999986 6665
Q ss_pred -------EeEEEcCCC--CCCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 -------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.++||+|+| .+++.||+|||.|+.. .+. ++.+++++.++|..++ .+.+..+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCH
Confidence 269999997 5778899999998742 122 2345556666664332 1356779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 800 (1470)
|||||++|||||+.+|+++||||||++||+.+...+.+ +++.+. .+.|||++||+++++.. ||+|++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999888765 454443 37899999999999865 999999999999999
Q ss_pred cChhhHHh
Q 000475 801 GKYEDLIA 808 (1470)
Q Consensus 801 g~~~~l~~ 808 (1470)
|+++++.+
T Consensus 228 g~~~~~~~ 235 (290)
T PRK13634 228 GTPREIFA 235 (290)
T ss_pred CCHHHHhc
Confidence 99988765
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=320.35 Aligned_cols=198 Identities=24% Similarity=0.415 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeCCCC-------CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH
Q 000475 1219 KIELENLLVQYNPTL-------PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~-------~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1291 (1470)
-++++|++..|+... -.+++||||+|++||.+||||.|||||||+.++|.|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 26899999999999999999999999999999999999999999999999988765
Q ss_pred HHhcccEEEccCCCCCcccHHHhcCcCCCCCHHHHHHHHHHcCcHHH-HHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1292 DLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI-VRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1292 ~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~-v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
.+..++++.+.|+++|+.+. ..+-| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 22345678999999998763 33333 4699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~~s 1447 (1470)
|.-+|+++|+|||||+||....++|.+.+.+.. .+-|.+.|||+++.+.. ||||.||..|+|+|.|+.+++++++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999887643 47899999999999987 999999999999999999999999988
Q ss_pred hHHHHHHHH
Q 000475 1448 SFSKLVAEF 1456 (1470)
Q Consensus 1448 ~f~~lv~~~ 1456 (1470)
.|.+..-+.
T Consensus 204 pYTk~Ll~a 212 (268)
T COG4608 204 PYTKALLSA 212 (268)
T ss_pred HHHHHHHHh
Confidence 887665444
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=364.12 Aligned_cols=220 Identities=24% Similarity=0.399 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCEeCCCCCHH
Q 000475 1219 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP-----SGGRILIDGVDISMIGLQ 1291 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~l~ 1291 (1470)
-|+++|++++|+.+ ...+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 23699999999999999999999999999999999999986 799999999999887654
Q ss_pred H---Hh-cccEEEccCCC--CCc-ccHHHhcCc----CCCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000475 1292 D---LR-SRLSIIPQDPM--LFQ-GTVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356 (1470)
Q Consensus 1292 ~---LR-~~isiIpQdp~--LF~-gTIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1356 (1470)
+ .| ++++|+||+|. ++. -|+++|+.. ....+ .+++.++++.+++.+... -+|..+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~----~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK----RLTDYP----HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH----HHhhCC----cc
Confidence 3 34 58999999985 444 489998752 11122 245677888888753211 123333 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCEEEEEeCCEEE
Q 000475 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVL 1433 (1470)
Q Consensus 1357 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vv 1433 (1470)
||||||||++|||||+.+|++|+||||||+||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998853 37899999999999876 9999999999999
Q ss_pred EecChhHHhhcCC
Q 000475 1434 EYDSPRQLLEDNS 1446 (1470)
Q Consensus 1434 E~g~p~~Ll~~~~ 1446 (1470)
+.|+++++++.+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999986544
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=345.61 Aligned_cols=201 Identities=26% Similarity=0.381 Sum_probs=166.7
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|.. ...+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 3789999999963 247888 99999999999999999999999999999999999986 6765
Q ss_pred --EeEEEcCCCCCCC-ccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++||+|++.++. .||+|||.|+... +. ++.+++++.+++.+. .+....+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-----------~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHH
Confidence 3799999998875 6999999987432 21 234445555555432 2355678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 806 (1470)
+|||||+.+|+++|||||||+||+.+...+.+. ++.+. + ++|+|+|||+++++.. ||+|++|++|++.+.|+++++
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999998887664 44443 3 7899999999998765 999999999999999999998
Q ss_pred Hhhch
Q 000475 807 IADQN 811 (1470)
Q Consensus 807 ~~~~~ 811 (1470)
...+.
T Consensus 222 ~~~p~ 226 (369)
T PRK11000 222 YHYPA 226 (369)
T ss_pred HhCcc
Confidence 76433
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=343.68 Aligned_cols=203 Identities=27% Similarity=0.365 Sum_probs=168.0
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCC--CcEEEECC------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~--G~~i~~~g------ 659 (1470)
..++++|++++|.. ...+++ ||++++|++++|+|||||||||||++|+|+.+|++ |++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 45899999999963 257888 99999999999999999999999999999999999 986 7766
Q ss_pred -----EeEEEcCCCCCCC-ccHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++||+|++.++. .||+|||.|+... . .++.+++++..+|.+. .+.+..+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA-----------AAHLPAQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch-----------hhCChhhCCHHHH
Confidence 3699999998875 5999999987532 2 1234444555554432 3456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 803 (1470)
|||+|||||..+|+++|||||||+||+....++.+.+..-..+ +.|+|+||||++++.. ||+|++|++|++++.|++
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988887654332223 6899999999998765 999999999999999999
Q ss_pred hhHHhhch
Q 000475 804 EDLIADQN 811 (1470)
Q Consensus 804 ~~l~~~~~ 811 (1470)
+++...+.
T Consensus 224 ~~~~~~p~ 231 (362)
T TIGR03258 224 QALYDAPA 231 (362)
T ss_pred HHHHhCcC
Confidence 99987443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=341.83 Aligned_cols=201 Identities=34% Similarity=0.466 Sum_probs=166.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|.. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 257888 99999999999999999999999999999999999986 7765
Q ss_pred --EeEEEcCCCCCCC-ccHHHHHhcCCCC-------CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~eNI~~g~~~-------~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++||+|++.++. .|++|||.|+... +. ++.+++++..++.+ ....+..+|||||
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq 141 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQ 141 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 3799999998875 6999999997532 11 22333444444432 2335678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
||||+|||||+.+|+++|||||||+||+.+...+.+. ++.+. + ++|+|+|||+++++.. ||+|++|++|++++.|+
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999998888764 44443 3 7899999999998765 99999999999999999
Q ss_pred hhhHHhhch
Q 000475 803 YEDLIADQN 811 (1470)
Q Consensus 803 ~~~l~~~~~ 811 (1470)
++++...+.
T Consensus 221 ~~~i~~~p~ 229 (353)
T PRK10851 221 PDQVWREPA 229 (353)
T ss_pred HHHHHhCcc
Confidence 999876433
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=325.72 Aligned_cols=194 Identities=28% Similarity=0.413 Sum_probs=159.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCC-----cCCCCcEEEECC-----
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~-----~~~~G~~i~~~g----- 659 (1470)
++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.+ +|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 468899999863 357889 9999999999999999999999999999999 9999986 6655
Q ss_pred ----------EeEEEcCCCCCCCccHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHHhccCCCcccccCC--CC
Q 000475 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER--GI 719 (1470)
Q Consensus 660 ----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~--g~ 719 (1470)
.++|++|++.+++.|++||+.++... . +++.+++++.+++.+... .+ +.
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~ 140 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-----------DRLHAL 140 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-----------ccCCcc
Confidence 36999999988888999999886421 1 123344455555543322 22 57
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+||||||||++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 899999999999999999999999999999999999888865 45554444899999999998765 9999999999999
Q ss_pred EecChhh
Q 000475 799 QSGKYED 805 (1470)
Q Consensus 799 ~~g~~~~ 805 (1470)
+.|+.++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=320.31 Aligned_cols=436 Identities=19% Similarity=0.232 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CHH------HHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000475 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSG------IIINMINVDVERIGDFFLYIHR-IWLLPVQVFLALVIL 409 (1470)
Q Consensus 339 ~~~~~r~g~rir~~L~~~iy~K~L~ls~~~~--~~G------~ivnlms~D~~~i~~~~~~~~~-~w~~pl~i~~~~~lL 409 (1470)
.|..+++..+.|.-|+..+..|=|.-...-+ ..| ..=..+..|+..+.+....+.. +.-..++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999998886543222 222 1235778888777665544333 333334444445567
Q ss_pred HHHhhhHH--------HHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHhccHH
Q 000475 410 YKNLGAAP--------AFAALF--STIFVMVSNT----PLANRQERFHSMIME-AKDARIKATSETLKSMRVLKLLSWEQ 474 (1470)
Q Consensus 410 ~~~lG~~~--------~l~~l~--~~~i~~~~~~----~~~~~~~~~~~~~~~-~~D~R~~~~~E~L~~ik~IK~~~wE~ 474 (1470)
|..-|..+ .++|.. ++++..++.. .++|..-+.-.+..+ .-|-|- ....+.++-..|-+|+-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~-~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY-SLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-HHHHHHhhHHHHHHhcCcH
Confidence 74444110 112211 1222223333 334433332222222 223343 3446778888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 000475 475 EFLKKLLRLREIERDSLKKY-------LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIY 547 (1470)
Q Consensus 475 ~f~~~i~~~R~~E~~~l~~~-------~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~~~~~l~~pl~ 547 (1470)
.-++++++.-..=++..++. ........++....|.++ .+-.+..+.++.|.+..+...|+.+...+.
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li-----~ap~~f~g~i~~G~lmqa~~aF~~v~ssls 340 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILI-----AAPRYFSGQITFGGLMQAVGAFGQVHSSLS 340 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHh-----ccHhhhcCcChHHHHHHHHHHHHHHHHHHH
Confidence 87777765433222221111 111111111111222221 112246788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC--CCC-CCCCCCC------CCCCccEEEeeeEEEeCCCccccCCCcccccC-c
Q 000475 548 NLPELISMIAQTKVSLYRIQEFIKEDN--QKK-PITEPTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-K 617 (1470)
Q Consensus 548 ~lp~~i~~~~~a~vs~~Ri~~fL~~~e--~~~-~~~~~~~------~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-n 617 (1470)
.+-+.+..+.+-++++.|+.+|-..-+ +.+ .....+. +..+..|.++|++..-++. .+.+++ |
T Consensus 341 wfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~l~ 413 (604)
T COG4178 341 WFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSELN 413 (604)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------Ceeeccce
Confidence 999999999999999999999985433 111 1000000 1114679999999987754 467788 9
Q ss_pred eEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-EeEEEcCCCCCCCccHHHHHhcCCC---CCHHHHHHH
Q 000475 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYEEV 693 (1470)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-~~ayv~Q~~~i~~~Ti~eNI~~g~~---~~~~~y~~v 693 (1470)
+.+++|+.+.|.|+||||||||+++|.|..|--+|++..-.+ .+-|+||.|.++.||.||-|++... ++++.+.++
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence 999999999999999999999999999999999998633323 3799999999999999999999753 678889999
Q ss_pred HHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEE
Q 000475 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773 (1470)
Q Consensus 694 ~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tv 773 (1470)
+..|+|.+-.+.+.+-+ .-...||||||||++.||.++++|++++|||.|||||+.++..+++ .+++.+.+.|+
T Consensus 494 L~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tv 567 (604)
T COG4178 494 LHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATV 567 (604)
T ss_pred HHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEE
Confidence 99999998888865533 2456799999999999999999999999999999999999988876 56777789999
Q ss_pred EEEcCCcchhhhcCEEEEEe
Q 000475 774 LYTTHQLEFLDAADLVLVMK 793 (1470)
Q Consensus 774 ilvtH~~~~l~~~d~i~~l~ 793 (1470)
|-|.|+.......++.+.+.
T Consensus 568 ISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 568 ISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEeccchhhHHHHhhheeec
Confidence 99999988777666666554
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=327.14 Aligned_cols=197 Identities=23% Similarity=0.367 Sum_probs=160.4
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 367899999963 357888 99999999999999999999999999999999999986 6654
Q ss_pred ----EeEEEcCCCCCCC-ccHHHHHhcCCCCC-------------H----HHHHHHHHHhcchHHHHhccCCCcccccCC
Q 000475 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR-------------Q----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~-~Ti~eNI~~g~~~~-------------~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~ 717 (1470)
.++|++|++.++. .|++||+.++.... . ++.++.++..++ ....+.+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 140 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRP 140 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCC
Confidence 2799999988776 49999998864211 1 112222222222 2234567
Q ss_pred CCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000475 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1470)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 795 (1470)
..+||||||||++||||++.+|++++|||||++||+.+...+++. +..+. +++|+|++||+++++.. ||+|++|++|
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 789999999999999999999999999999999999998888764 44433 68999999999999865 9999999999
Q ss_pred EEEEecChhhHHh
Q 000475 796 KIEQSGKYEDLIA 808 (1470)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1470)
++.+.|+++++..
T Consensus 220 ~i~~~~~~~~~~~ 232 (236)
T cd03219 220 RVIAEGTPDEVRN 232 (236)
T ss_pred EEEeecCHHHhcc
Confidence 9999998887754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=333.87 Aligned_cols=201 Identities=28% Similarity=0.422 Sum_probs=167.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.. ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48899999999742 12357899 99999999999999999999999999999999999986 6666
Q ss_pred ----EeEEEcCCCC--CCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 ----~~ayv~Q~~~--i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++|++|+|. ++..||+|||.|+.. .+. ++.+++++..++.+.. .....+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK-----------EREPARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHH
Confidence 3699999984 567899999998742 222 3345556666664332 345679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 804 (1470)
||++||||++.+|+++||||||++||+.+...+++ ++..+. .|+|+|++||+++.+..||+|++|++|+++..|+.+
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998887765 455443 389999999999998779999999999999999988
Q ss_pred hHHh
Q 000475 805 DLIA 808 (1470)
Q Consensus 805 ~l~~ 808 (1470)
++..
T Consensus 226 ~~~~ 229 (279)
T PRK13650 226 ELFS 229 (279)
T ss_pred HHHc
Confidence 8765
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=320.52 Aligned_cols=195 Identities=22% Similarity=0.264 Sum_probs=167.6
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
-++++|++++|++ ..+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998752 4466899
Q ss_pred EEccCCCCCcc-cHHHhcCcC----CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHcc
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL----EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~----~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1373 (1470)
++||+|.+|.+ |+++|+... +...++.+.++++..++.+. ++..+ .+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999887 999998532 22234456677777776443 34443 4699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCEEEEEeC
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDE 1429 (1470)
Q Consensus 1374 ~~~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~-~DrIlvL~~ 1429 (1470)
+|++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999865 357899999999999976 999999975
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=335.62 Aligned_cols=204 Identities=23% Similarity=0.354 Sum_probs=165.4
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.|+++|++++|+.... ...+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceeccccccc
Confidence 3789999999974310 11357899 99999999999999999999999999999999999986 5532
Q ss_pred ----------------------------EeEEEcCCC--CCCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHH
Q 000475 660 ----------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQD 702 (1470)
Q Consensus 660 ----------------------------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d 702 (1470)
.+|||+|+| .++..||+|||.|+.. .+. ++..++++.++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 269999986 4677899999998752 222 233444555555322
Q ss_pred HHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcc
Q 000475 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLE 781 (1470)
Q Consensus 703 ~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~ 781 (1470)
..+....+||||||||++|||||+.+|+++||||||++||+.....+.+. +..+ ..++|||+|||+++
T Consensus 158 ----------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 158 ----------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHH
Confidence 13456789999999999999999999999999999999999988777654 4443 34899999999999
Q ss_pred hhh-hcCEEEEEeCCEEEEecChhhHHh
Q 000475 782 FLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 782 ~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
++. .||+|++|++|++++.|+.+++..
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 875 599999999999999999988865
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=327.40 Aligned_cols=202 Identities=27% Similarity=0.393 Sum_probs=165.5
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCC-----CCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~~i~~~g---- 659 (1470)
.++++|++++|+. ...+++ ||++++||+++|+|+||||||||+++|+|.++|+ +|++ .++|
T Consensus 1 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGE--------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECC--------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEcc
Confidence 3688999999963 247888 9999999999999999999999999999999988 9986 5544
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|+++++..|++||+.++... .. ++.+++++..++.++++ ...+....+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 144 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALG 144 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCccc
Confidence 37999999998889999999875321 11 22334444445442221 224567789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 56555556899999999998865 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++..
T Consensus 224 ~~~~~~~~~ 232 (247)
T TIGR00972 224 YGPTEQIFT 232 (247)
T ss_pred eCCHHHHHh
Confidence 999988765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=317.39 Aligned_cols=220 Identities=25% Similarity=0.422 Sum_probs=192.2
Q ss_pred cEEEEeEEEEeCCC----------------------CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000475 1219 KIELENLLVQYNPT----------------------LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~----------------------~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G 1276 (1470)
.|+++||+.-|..+ ...-++|+||+|+.||+..|.|-||||||||+.++.|++||++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57888888776532 12357899999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHh----cccEEEccCCCCCcc-cHHHhcCcCCC---C----CHHHHHHHHHHcCcHHHHHhccc
Q 000475 1277 RILIDGVDISMIGLQDLR----SRLSIIPQDPMLFQG-TVRTNLDPLEQ---H----SDQEIWEVINKCHLAEIVRQDQR 1344 (1470)
Q Consensus 1277 ~I~IDG~dI~~i~l~~LR----~~isiIpQdp~LF~g-TIR~NLdp~~~---~----sd~eI~~aL~~~~L~~~v~~lp~ 1344 (1470)
+|++||.||..++..+|| +++++|.|.--||+. ||-+|....-+ . ..+...++|+.+||.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988774 589999999999877 99999875421 2 23447789999999999877764
Q ss_pred ccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-c
Q 000475 1345 LLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-N 1421 (1470)
Q Consensus 1345 gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAHRl~ti~~-~ 1421 (1470)
.||||+|||+.|||||..+|+||++|||.|+|||--...+|+-|.+.. -++||+.|||+++.... -
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 589999999999999999999999999999999999999999887643 36899999999998765 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCChH
Q 000475 1422 DLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1422 DrIlvL~~G~vvE~g~p~~Ll~~~~s~f 1449 (1470)
|||..|++|+|+..|+|+|.+.+|.-.|
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 9999999999999999999999886544
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=328.47 Aligned_cols=203 Identities=24% Similarity=0.360 Sum_probs=166.4
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1470)
..++++|++++|++ ...+++ ||++++|++++|+|+||||||||+++|+|..+ |++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 46899999999963 257889 99999999999999999999999999999864 578986 5544
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.+++.|++||+.++... . .++.++.++.+++.+.+. +..+..+.
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 37999999988888999999986321 1 223344455555543222 23456788
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+|||||||||+||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999877765 55555567899999999999865 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+++++..
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999988865
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=324.04 Aligned_cols=199 Identities=27% Similarity=0.397 Sum_probs=166.1
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 4789999999853 357889 99999999999999999999999999999999999986 6665
Q ss_pred ----EeEEEcCCCCCCCccHHHHHhcCCCCC---HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~Ti~eNI~~g~~~~---~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1470)
.++|++|++.++..|++||+.++.... .++..++++.+++..+. ......+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHH
Confidence 379999999988889999999864321 23444555655554221 2356778999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHHh
Q 000475 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++.. ||+|++|++|++++.|+.+++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 99999999999999999999998777765 454443 37999999999999875 99999999999999999988865
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=300.53 Aligned_cols=213 Identities=28% Similarity=0.436 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+.+|++++-. ...+|+|+||+++|||.+||+||||||||||+++|.|...|++|++.++|+++++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889887654 3458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC-CcccHHHhcC----cCC---CCCHHH--HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1300 IPQDPML-FQGTVRTNLD----PLE---QHSDQE--IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1300 IpQdp~L-F~gTIR~NLd----p~~---~~sd~e--I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
.||+..| |.-|++|-+. |.+ +..+++ ..++|.++++..+-.+ | -..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----~------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----D------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----c------hhhcCchHHHHHHHHH
Confidence 9999865 8889999875 442 222344 6788999988765432 1 1359999999999999
Q ss_pred HHcc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh-hhcCEEEEEeCCEEEEecChhHH
Q 000475 1370 VLLK------KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQL 1441 (1470)
Q Consensus 1370 ALLr------~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti-~~~DrIlvL~~G~vvE~g~p~~L 1441 (1470)
+|.+ ++|+|+||||||+||..-...+.++.|+.. +++.|+.|=|+++.. +.||||++|.+|||+..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9985 347999999999999999999999999865 579999999999976 55999999999999999999999
Q ss_pred hhcC
Q 000475 1442 LEDN 1445 (1470)
Q Consensus 1442 l~~~ 1445 (1470)
+..+
T Consensus 229 lt~E 232 (259)
T COG4559 229 LTDE 232 (259)
T ss_pred cCHH
Confidence 8753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=324.41 Aligned_cols=198 Identities=25% Similarity=0.360 Sum_probs=164.1
Q ss_pred EEEEeEEEEeCC----C-CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEc--C--EeCCCCCH
Q 000475 1220 IELENLLVQYNP----T-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID--G--VDISMIGL 1290 (1470)
Q Consensus 1220 I~~~nvs~~Y~~----~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID--G--~dI~~i~l 1290 (1470)
|+++|++++|+. + .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---H-hcccEEEccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCC
Q 000475 1291 QD---L-RSRLSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1358 (1470)
Q Consensus 1291 ~~---L-R~~isiIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS 1358 (1470)
.. + +++++|+||+|.+|.. |+++|+... .... ++++.++++..++.+... +. .+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL----PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC----CcccCC
Confidence 54 3 4679999999988875 999998531 1122 345667777777644221 22 245799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEE
Q 000475 1359 VGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVL 1427 (1470)
Q Consensus 1359 gGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL 1427 (1470)
+|||||++|||||+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999864 47899999999998864 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=318.36 Aligned_cols=192 Identities=22% Similarity=0.309 Sum_probs=164.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999875 34567899999
Q ss_pred EccCCCCC-cccHHHhcCcC--CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1300 IPQDPMLF-QGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1300 IpQdp~LF-~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
+||++.++ ..|+++|+... ....+.++.++++..++.+. .|.++ .+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 56999998632 11234456777777776442 23333 3699999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEE
Q 000475 1377 ILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVL 1425 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIl 1425 (1470)
+|+|||||++||..+.+.+.+.|++. .+++|+|++||+...+.+||.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999999999975 35789999999999998898654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=321.32 Aligned_cols=190 Identities=32% Similarity=0.417 Sum_probs=155.6
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 467899999963 357889 99999999999999999999999999999999999986 6655
Q ss_pred -EeEEEcCCCCCCC-ccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHH
Q 000475 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1470)
.++|++|++.++. .|++||+.++... +. ++.+++++.+++.+. .+....+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHH
Confidence 3799999987764 6999999876421 11 223444555544332 33556789999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
||||+..+|+++||||||++||+.+...+++ ++..+. .++|||++||+++++.. ||+|++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELRE-ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999888775 454443 37899999999998765 9999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=361.28 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=176.0
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCH-HHHhccc
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1297 (1470)
.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976554 3468899
Q ss_pred EEEccCCCCCcc-cHHHhcCcCC-----C-CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHH
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLE-----Q-HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1298 siIpQdp~LF~g-TIR~NLdp~~-----~-~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1366 (1470)
+|+||+|.+|.+ |+++|+.... . .. ++++.++++.+++.+ .++.. ..+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTP----LKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCc----hhhCCHHHHHHHH
Confidence 999999988876 9999996421 1 12 234566677666532 12333 3569999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecCh
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438 (1470)
Q Consensus 1367 LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p 1438 (1470)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998753 47899999999999876 999999999999877654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=326.32 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=168.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc---CCCCcEEEECC------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~---~~~G~~i~~~g------ 659 (1470)
.|+++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4789999999963 357889 99999999999999999999999999999974 689986 6665
Q ss_pred -------EeEEEcCCCCCCCccHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 -------KKAYVPQSSWIQTGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 -------~~ayv~Q~~~i~~~Ti~eNI~~g~~~---------~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.++|++|++.+++.|++||+.++... .+++.+++++.+++.+.+.. ...+++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCH
Confidence 37999999999889999999876321 11234456666666544332 23467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
||||||+||||++++|+++||||||++||+++...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999998777765 55555568999999999998865 99999999999999999
Q ss_pred hhhHHh
Q 000475 803 YEDLIA 808 (1470)
Q Consensus 803 ~~~l~~ 808 (1470)
.+++..
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 988865
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=332.39 Aligned_cols=197 Identities=29% Similarity=0.419 Sum_probs=164.4
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.. .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 48899999999632 357899 99999999999999999999999999999999999986 6665
Q ss_pred ----EeEEEcCCC--CCCCccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 ----~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++|++|+| .++..|++||+.|+.. .+ +++++++++.+++.+.. .....+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-----------DKPPYHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCChhhCCHHHH
Confidence 369999998 5778899999998742 22 23445556666654332 244568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 804 (1470)
||++|||||..+|+++||||||++||+.+...+.+ ++..+ .+++|+|++||+++++. .||+|++|++|++++.|+.+
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999888865 45444 34899999999999985 59999999999999999986
Q ss_pred hH
Q 000475 805 DL 806 (1470)
Q Consensus 805 ~l 806 (1470)
++
T Consensus 224 ~~ 225 (274)
T PRK13647 224 LL 225 (274)
T ss_pred Hh
Confidence 54
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.50 Aligned_cols=188 Identities=24% Similarity=0.397 Sum_probs=154.2
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6789999999642 2357889 99999999999999999999999999999999999986 6665
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++||+.++.. .. +++.+++++.+++.+.. .....+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-----------HALPMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHH
Confidence 3699999998765 699999987532 11 23344555555554322 34556899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|++
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999888876 44444 347899999999999875 999999999975
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=391.53 Aligned_cols=215 Identities=22% Similarity=0.355 Sum_probs=189.2
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccE
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~is 1298 (1470)
.|+++|++++|+++...+++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.+ ...+.|++++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996434569999999999999999999999999999999999999999999999999975 5677899999
Q ss_pred EEccCCCCCcc-cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHH
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1370 (1470)
++||++.+|+. |+++||... ...+ ++++.+.|+.++|.+.. |..+ .+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-------~~~~----~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-------NEEA----QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHHHHHHHHHH
Confidence 99999999975 999999642 1122 34567778888775432 3333 5699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1371 LLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~~ 1445 (1470)
|+.+|+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++.+|.++-
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999998778999999999999975 9999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=326.52 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=165.7
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g--- 659 (1470)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36899999999963 247889 999999999999999999999999999999987 48986 5543
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.+++.|++|||.++... +. ++.+++++.+++...+. ...+.++.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcc
Confidence 37999999998889999999986421 11 22233444444432221 12345778
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+|||||||||+||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999888765 55555567899999999999765 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+.+++..
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999988865
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=294.10 Aligned_cols=217 Identities=29% Similarity=0.440 Sum_probs=188.8
Q ss_pred cEEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCC----------
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI---------- 1288 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i---------- 1288 (1470)
.++++|+..+|.+. -||||||++.++|+.|.|+|.|||||||++.++.=+-.|+.|+|.++|..|..-
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 68899999999765 399999999999999999999999999999999999999999999999887542
Q ss_pred ---CHHHHhcccEEEccCCCCCcc-cHHHhcC--cC---CCCCHHHH---HHHHHHcCcHHHHHhcccccCccccCCCCC
Q 000475 1289 ---GLQDLRSRLSIIPQDPMLFQG-TVRTNLD--PL---EQHSDQEI---WEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356 (1470)
Q Consensus 1289 ---~l~~LR~~isiIpQdp~LF~g-TIR~NLd--p~---~~~sd~eI---~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1356 (1470)
.++.+|+++++|.|+--|++. |+-+|.- |. +.-.++.+ ...|.++|+.+....-| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 256789999999999999876 9999984 42 22223333 34578888887654433 36
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEE
Q 000475 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1357 LSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE 1434 (1470)
|||||+||.+|||||.-+|+++++|||||+||++--..+.++|++.. .++|+++|||.+...++ +..|+.|.+|+|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999999999888754 68999999999999988 89999999999999
Q ss_pred ecChhHHhhcCCCh
Q 000475 1435 YDSPRQLLEDNSSS 1448 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~ 1448 (1470)
.|+|+++..++.|.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999999874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=321.83 Aligned_cols=195 Identities=24% Similarity=0.359 Sum_probs=159.4
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 468899999963 357888 99999999999999999999999999999999999986 6665
Q ss_pred --EeEEEcCCCCCCC-ccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++|++|++.++. .|++||+.++.. .+ .++.+++++.+++.+. ......+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHH
Confidence 3799999987765 599999987521 11 1233445555555432 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cC-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 806 (1470)
+||||++.+|+++||||||++||+++...+.+. +..+ .+ ++|+|++||+++++.. ||+|++|++|++++.|+.+++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999998877654 4443 33 7899999999999875 999999999999998877653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=315.41 Aligned_cols=188 Identities=26% Similarity=0.404 Sum_probs=159.3
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+.. ..+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 458999999999742 2357889 99999999999999999999999999999999999986 6665
Q ss_pred -----EeEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHH
Q 000475 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1470)
.++||+|+|.++++|++||+.+..+++.+. +.+.+. ++++..+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~---~~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE---IYGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHHH---HHHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 379999999999899999998755443322 222211 346788999999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 802 (1470)
++.+|+++||||||++||+.+...+.+ .++.+.+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999999877765 4555556899999999999987799999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=333.06 Aligned_cols=204 Identities=24% Similarity=0.435 Sum_probs=165.1
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+... ....+.|++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 378999999997430 012358999 99999999999999999999999999999999999986 6655
Q ss_pred --------EeEEEcCCC--CCCCccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 660 --------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
.+|||+|+| .++..|++|||.|+.. .+.+ +.++.++.+++..+ ..+..+.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 369999997 5777899999998742 2222 22333344444211 2345678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEE
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~ 799 (1470)
||||||++|||||+.+|+++||||||++||+.+...+.+ .++.+. .++|||+|||+++++. .||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999888765 455443 4799999999999976 599999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988765
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=317.06 Aligned_cols=193 Identities=26% Similarity=0.362 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998753 2 28889999
Q ss_pred EccCCCCC-cccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1300 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1300 IpQdp~LF-~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
+||++.++ ..|+++|+... ....++++.++++..++.+... .++ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-------LPF----GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-------CCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 99988765 57999998632 2234667889999999876432 222 369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEEEEeC
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIlvL~~ 1429 (1470)
++|+|||||++||+.+.+.+.+.|++. .+++|+|+++|+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999874 357999999999999887 99988754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=321.21 Aligned_cols=196 Identities=32% Similarity=0.448 Sum_probs=159.0
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------Ee
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------~~ 661 (1470)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46889999996420 11467889 99999999999999999999999999999999999986 6765 47
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHH
Q 000475 662 AYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1470)
Q Consensus 662 ayv~Q~~~i~~-~Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1470)
+|++|++.++. .|++||+.++... . .++.++.++.+++.+. ...+..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99999998776 7999999876321 1 1233445555555432 23456789999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-c-CCcEEEEEcCCcchhhh-cCEEEEEe--CCEEEEecCh
Q 000475 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMK--DGKIEQSGKY 803 (1470)
Q Consensus 734 Al~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 803 (1470)
|++.+|+++||||||++||+.+...+++. +..+ . .++|+|++||+++++.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999998888764 4444 2 37899999999998765 99999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=320.62 Aligned_cols=203 Identities=30% Similarity=0.447 Sum_probs=170.5
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1470)
...++++|++++|+.. ...+.+++ |+++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 4569999999999753 12357889 99999999999999999999999999999999999986 6665
Q ss_pred ------EeEEEcCCCCCCCccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHH
Q 000475 660 ------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1470)
.++|++|++.++..|++||+.++... ....+.+..+...+.+.++.++.|..+..++++.+|||||||||+||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 37999999998889999999987542 22222333334455667788877777778889999999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEE
Q 000475 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1470)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 797 (1470)
||++++|+++||||||++||+++...+.+ .+..+.+++|+|++||+++++..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999887765 45555567899999999999878999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=359.78 Aligned_cols=208 Identities=20% Similarity=0.340 Sum_probs=174.6
Q ss_pred EEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHH-HHhcccEEE
Q 000475 1222 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSII 1300 (1470)
Q Consensus 1222 ~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR~~isiI 1300 (1470)
++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3599999999999999999999999999999999999999999999999999876543 467889999
Q ss_pred ccCCCCCcc-cHHHhcCcCC----C--CCHH----HHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1301 PQDPMLFQG-TVRTNLDPLE----Q--HSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1301 pQdp~LF~g-TIR~NLdp~~----~--~sd~----eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
||+|.+|.. |+++|+.... . .+.+ ++.++++.+++. ........+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHHH
Confidence 999987754 9999996321 1 1222 334445554442 2223334579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998753 47899999999999876 9999999999999999988864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=315.33 Aligned_cols=192 Identities=21% Similarity=0.326 Sum_probs=164.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998765 457889999
Q ss_pred EccCCCCCc-ccHHHhcCcC---CCCCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCC
Q 000475 1300 IPQDPMLFQ-GTVRTNLDPL---EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375 (1470)
Q Consensus 1300 IpQdp~LF~-gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1375 (1470)
+||++.+|. .|+++|+... ....++++.++++.+++.++. +..+ .+||+|||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-------DLPA----AQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-------cCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998532 111244688899999987654 2333 469999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEEE
Q 000475 1376 RILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVLV 1426 (1470)
Q Consensus 1376 ~ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIlv 1426 (1470)
++|+|||||++||..+.+.+.+.|++. .++.|+|+++|+... ..||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-LVEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-ccceEEee
Confidence 999999999999999999999999875 357899999999854 34677765
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=341.08 Aligned_cols=205 Identities=26% Similarity=0.347 Sum_probs=167.8
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~------ 660 (1470)
...++++|++++|.. ...+++ ||++++|++++|+|||||||||||++|+|..+|++|++ .++|.
T Consensus 17 ~~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCC
Confidence 346999999999963 357888 99999999999999999999999999999999999986 77763
Q ss_pred -----eEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 661 -----KAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 661 -----~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
+|||+|++-++. .||+|||.|+.. ... ++.+++++..++.+. ...+..+|||||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~~~LSgGq~Q 156 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKRKPHQLSGGQRQ 156 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHH
Confidence 699999998875 599999999743 222 223344444444322 23566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhh
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 805 (1470)
||+|||||+.+|+++|||||||+||+.....+.+.+.+-.. .+.|+|+||||.+++. .||+|++|++|++++.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 99999999999999999999999999998877654433222 3789999999999865 599999999999999999999
Q ss_pred HHhhchh
Q 000475 806 LIADQNS 812 (1470)
Q Consensus 806 l~~~~~~ 812 (1470)
+..++..
T Consensus 237 ~~~~p~~ 243 (377)
T PRK11607 237 IYEHPTT 243 (377)
T ss_pred HHhCCcc
Confidence 8864443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=325.06 Aligned_cols=196 Identities=28% Similarity=0.393 Sum_probs=160.1
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999999622 357889 99999999999999999999999999999999999986 6655
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCCC------------C---HHHHHHHHHHhcchHHHHhccCCCcccccCC
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~~------------~---~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~ 717 (1470)
.++|++|++.++. .|++||+.++... . .++..++++.+++.. ..+..
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCC
Confidence 2699999988765 6999999876321 1 122333344444432 23456
Q ss_pred CCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeC
Q 000475 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1470)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~ 794 (1470)
+.+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++.. ||+|++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 78999999999999999999999999999999999999877765 455443 37899999999999864 999999999
Q ss_pred CEEEEecChhhH
Q 000475 795 GKIEQSGKYEDL 806 (1470)
Q Consensus 795 G~i~~~g~~~~l 806 (1470)
|++++.|+++++
T Consensus 222 G~i~~~~~~~~~ 233 (243)
T TIGR02315 222 GEIVFDGAPSEL 233 (243)
T ss_pred CEEEecCCHHHh
Confidence 999999998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=294.94 Aligned_cols=191 Identities=29% Similarity=0.409 Sum_probs=164.9
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
|+|+|++..|+.. .+.|+| ||+|++||++-++||+|||||||+++|.++..|+.|++ .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 7899999999853 568999 99999999999999999999999999999999999986 6655
Q ss_pred ------EeEEEcCCCC-CCCccHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSW-IQTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~-i~~~Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
+||+|+|+-- +++.||.||+.|.... . +++..++++..+|.+....+| ..|||||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchH
Confidence 4799999976 4678999999997532 1 345566778888888777766 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
||||+||||+..+|+++|-||||-+|||..+..|++- +..+ ..|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l-feeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL-FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH-HHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999999864 4443 459999999999999987 5699999999998653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=324.70 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=159.7
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.+ .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4678999999641 357889 99999999999999999999999999999999999986 5654
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCCC------------CH---HHHHHHHHHhcchHHHHhccCCCcccccCC
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~~------------~~---~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~ 717 (1470)
.++|++|++.++. .|++||+.++... .. ++.+++++..++. ...+.+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCC
Confidence 3799999987765 7999999875321 11 1222233333332 224567
Q ss_pred CCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhh-hcCEEEEEeC
Q 000475 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1470)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~d~i~~l~~ 794 (1470)
+.+||||||||++||||++.+|+++||||||++||+.+...+.+. +..+. .++|+|++||+++.+. .||+|++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 789999999999999999999999999999999999998888764 44443 3799999999999987 5999999999
Q ss_pred CEEEEecChhhHH
Q 000475 795 GKIEQSGKYEDLI 807 (1470)
Q Consensus 795 G~i~~~g~~~~l~ 807 (1470)
|++++.|+++++.
T Consensus 221 G~i~~~~~~~~~~ 233 (241)
T cd03256 221 GRIVFDGPPAELT 233 (241)
T ss_pred CEEEeecCHHHhh
Confidence 9999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=314.96 Aligned_cols=216 Identities=29% Similarity=0.409 Sum_probs=173.2
Q ss_pred cEEEeeeEEEeCCCccc--------------c--CCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCC
Q 000475 590 AIDIEAGEYAWDAREEN--------------F--KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~--------------~--~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 652 (1470)
.|+++|++.-+..+... + ......++| ||+++.||+.+|.|-+|||||||++++.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57788877666543210 0 012234667 999999999999999999999999999999999999
Q ss_pred cEEEECCE-----------------eEEEcCCCC-CCCccHHHHHhcCCCCC----HHH---HHHHHHHhcchHHHHhcc
Q 000475 653 AAIKVHGK-----------------KAYVPQSSW-IQTGTIRENILFGKDMR----QSF---YEEVLEGCALNQDIEMWA 707 (1470)
Q Consensus 653 ~~i~~~g~-----------------~ayv~Q~~~-i~~~Ti~eNI~~g~~~~----~~~---y~~v~~~~~l~~d~~~l~ 707 (1470)
++ .++|. +++|+|+.- ++..||.||+.||.+.. +++ -.+.++..+|+..-.
T Consensus 84 ~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~--- 159 (386)
T COG4175 84 EI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD--- 159 (386)
T ss_pred eE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh---
Confidence 97 78773 599999965 46789999999997642 333 344555666654433
Q ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEcCCcchh-hh
Q 000475 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DA 785 (1470)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~ 785 (1470)
..+.+||||+||||.|||||..||||+|+|||||||||-.+.++-++++.-..+ +||+|+||||+++. ..
T Consensus 160 --------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 160 --------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred --------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 345689999999999999999999999999999999999988887776643322 79999999999885 56
Q ss_pred cCEEEEEeCCEEEEecChhhHHhhchhHHHHH
Q 000475 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1470)
Q Consensus 786 ~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1470)
.|||..|+||+|++.|+++|+..++..++...
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 99999999999999999999998666665443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=317.02 Aligned_cols=190 Identities=26% Similarity=0.363 Sum_probs=158.6
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|..+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468899999953 357889 99999999999999999999999999999999999986 6665
Q ss_pred -EeEEEcCCCCCC-CccHHHHHhcCCC---CCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHH
Q 000475 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 660 -~~ayv~Q~~~i~-~~Ti~eNI~~g~~---~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1470)
.++|++|++.++ +.|++||+.++.. .++++.+++++..++.+.. .....+|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHH
Confidence 379999998876 5799999987532 2344555666666654332 34567899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 735 l~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
++.+|+++||||||++||+.+...+.+ ++.... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999888765 444433 57999999999999875 9999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=319.83 Aligned_cols=197 Identities=25% Similarity=0.438 Sum_probs=162.2
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1470)
++++|+++.|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|.
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4688999999642 1457899 99999999999999999999999999999999999986 66653
Q ss_pred ---eEEEcCCCCCC-CccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 661 ---KAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 661 ---~ayv~Q~~~i~-~~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
++|++|++.++ +.|++||+.++.. .. .++.+++++.+++.+. .+....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHH
Confidence 69999998876 6799999987531 11 1334455555555432 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 806 (1470)
+||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999887765 45555557999999999999875 999999999999999987664
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=339.35 Aligned_cols=202 Identities=25% Similarity=0.362 Sum_probs=164.8
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68899999997320 12467899 99999999999999999999999999999999999986 6654
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++||+.++.. .+. ++.++.++..++.+ .......+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-----------KADRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHH
Confidence 3799999998765 799999998632 222 12233344444332 2345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
|||++|||||+.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999888875 444443 37899999999999875 99999999999999999
Q ss_pred hhhHHhh
Q 000475 803 YEDLIAD 809 (1470)
Q Consensus 803 ~~~l~~~ 809 (1470)
.+++...
T Consensus 225 ~~~~~~~ 231 (343)
T PRK11153 225 VSEVFSH 231 (343)
T ss_pred HHHHHhC
Confidence 9998763
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=317.83 Aligned_cols=186 Identities=32% Similarity=0.472 Sum_probs=154.5
Q ss_pred EeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------Ee
Q 000475 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KK 661 (1470)
Q Consensus 593 ~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g----------~~ 661 (1470)
++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++| .+
T Consensus 2 ~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcce
Confidence 57888888631 357888 99999999999999999999999999999999999986 6766 47
Q ss_pred EEEcCCC--CCCCccHHHHHhcCCCC---CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHc
Q 000475 662 AYVPQSS--WIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1470)
Q Consensus 662 ayv~Q~~--~i~~~Ti~eNI~~g~~~---~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1470)
+|++|+| .+++.|++||+.++.+. ++++.+++++.+++.+.. .....+||||||||++||||++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK-----------ERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhc-----------CCCchhCCHHHHHHHHHHHHHH
Confidence 9999997 46678999999986432 234556666766664332 3455689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 737 ~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
.+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999887765 45544 457899999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=359.41 Aligned_cols=211 Identities=23% Similarity=0.374 Sum_probs=177.5
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEcCEeCCCCCHHH-Hhcc
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDISMIGLQD-LRSR 1296 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI~~i~l~~-LR~~ 1296 (1470)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3599999999999999999999999999999999999987 7999999999998877655 4678
Q ss_pred cEEEccCCCCCcc-cHHHhcCcCCC-------CC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPLEQ-------HS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1297 isiIpQdp~LF~g-TIR~NLdp~~~-------~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
++|+||+|.+|.. |+++|+..... .. ++++.++++..++.+.. .+.++ ..||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRPV----GDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCch----hhCCHHHHHH
Confidence 9999999988876 99999863211 11 12355566666553210 12333 4699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
++|||||+++|+||+|||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++..
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999998753 47899999999999976 9999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=333.27 Aligned_cols=199 Identities=28% Similarity=0.427 Sum_probs=164.3
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|++ ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46899999999963 357889 99999999999999999999999999999999999986 7765
Q ss_pred ----EeEEEcCCCCCC-CccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~-~~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
.+|||||++.++ +.|++||+.|.... +. ++.+++++.+++... ...+..+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-----------ADAKVGELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-----------hcCchhhCCHHHHH
Confidence 379999998876 47999999863221 11 222334444443321 23455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhh
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 805 (1470)
|++|||||.++|++++|||||++||+.+...+++ .+..+. +|+|+|++||++++++. ||+|++|++|++++.|++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888776 455543 48999999999999876 99999999999999999998
Q ss_pred HHh
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+.+
T Consensus 225 l~~ 227 (306)
T PRK13537 225 LIE 227 (306)
T ss_pred HHh
Confidence 865
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=362.57 Aligned_cols=199 Identities=28% Similarity=0.374 Sum_probs=170.4
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEcCEeCCCCCHHHHhcccEEEccCCCCCcc-c
Q 000475 1234 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS--GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-T 1310 (1470)
Q Consensus 1234 ~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~--~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~g-T 1310 (1470)
..+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|.. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 899999999874 2456789999999999965 9
Q ss_pred HHHhcCcC------CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCC-CCCCChhHHHHHHHHHHHccCCCEEE
Q 000475 1311 VRTNLDPL------EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAED-GENWSVGQRQLVCLARVLLKKKRILV 1379 (1470)
Q Consensus 1311 IR~NLdp~------~~~sd~e----I~~aL~~~~L~~~v~~lp~gLdt~v~e~-G~nLSgGQrQrl~LARALLr~~~ILl 1379 (1470)
+|||+... ...++++ +.+.++..+|.+ ..||.+++. ...||||||||++|||||+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999631 1234433 445556665543 457888653 67899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCEEEEEeCCEEEEecChhHHhh
Q 000475 1380 LDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT-V-IDNDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1380 LDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t-i-~~~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
|||||++||+.+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999864 58999999999984 5 4599999999999999999998864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=320.29 Aligned_cols=190 Identities=31% Similarity=0.431 Sum_probs=153.6
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+..+ ...+.+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46889999996420 11467889 99999999999999999999999999999999999986 5543
Q ss_pred -------EeEEEcCCCCCCCc-cHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 -------KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 -------~~ayv~Q~~~i~~~-Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++|++|++.++.. |++||+.++... + +++.+++++..++.+ ..+....+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHH
Confidence 47999999988764 999999986432 1 123344444444432 234566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhhcCEEEEEeCCEE
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i 797 (1470)
||||++||||++.+|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++++..||+|++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999877765 455543 37899999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=317.67 Aligned_cols=187 Identities=33% Similarity=0.502 Sum_probs=152.3
Q ss_pred EeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------eEE
Q 000475 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAY 663 (1470)
Q Consensus 593 ~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------~ay 663 (1470)
++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|. ++|
T Consensus 2 ~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheEE
Confidence 5788888853 357888 99999999999999999999999999999999999997 77763 899
Q ss_pred EcCCCCC---CCccHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 664 VPQSSWI---QTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 664 v~Q~~~i---~~~Ti~eNI~~g~~~-----------~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
++|++.+ ++.|++||+.++... .+++.+++++.+++.+.. .....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHH
Confidence 9999875 457999999886431 123344555555554332 245678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
+||||+..+|+++||||||++||+.+...+.+. +..+. +++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999998887664 44433 57899999999999875 9999999986 44443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=323.85 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=166.7
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1470)
..++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++ |++|++ .++|
T Consensus 12 ~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGENI 82 (260)
T ss_pred ceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEEc
Confidence 45899999999963 257889 99999999999999999999999999999986 478986 5543
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~----~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ...++...
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCC
Confidence 3789999998888999999998632 222 23344455555433222 23456788
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+||||||||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998877765 45555567899999999999865 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+.+++..
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999988865
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=320.44 Aligned_cols=197 Identities=26% Similarity=0.401 Sum_probs=160.0
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. ...+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468899999963 357888 99999999999999999999999999999999999986 5654
Q ss_pred ----EeEEEcCCCCCCCc-cHHHHHhcCCCC---CHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~eNI~~g~~~---~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
.++|++|++.++.. |++||+.++.+. ... +.++.++..++. ...+....+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHH
Confidence 27999999987764 999999875321 111 122233333322 2345667899999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhh
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 805 (1470)
|++||||++.+|+++||||||++||+.+...+.+ +++.+. +++|+|++||+++.+.. ||+|++|++|++.+.|+.++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 9999999999999999999999999999887765 444443 47899999999988765 99999999999999999887
Q ss_pred HHh
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+..
T Consensus 220 ~~~ 222 (232)
T cd03218 220 IAA 222 (232)
T ss_pred hhc
Confidence 754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=318.41 Aligned_cols=197 Identities=26% Similarity=0.430 Sum_probs=158.8
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468899999863 257888 99999999999999999999999999999999999986 6654
Q ss_pred ----EeEEEcCCCCCCCc-cHHHHHhcCCCCC--H---HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR--Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~eNI~~g~~~~--~---~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++|++|++.++.. |++||+.++.... . ++.+++++.. ..+ ....+.+..+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHH
Confidence 27999999987764 9999999875322 1 1112222222 111 1223467789999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 807 (1470)
+||||+..+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFE-AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999887765 454443 57899999999998765 9999999999999999877764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=327.35 Aligned_cols=201 Identities=27% Similarity=0.410 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 4 ~~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcH
Confidence 358999999999642 2457889 99999999999999999999999999999999999986 6766
Q ss_pred -----EeEEEcCCC--CCCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 -----~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|+| .+++.|++|||.++.. ... ++.+++++.++|...++ ....+|||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~ 145 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQ 145 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHH
Confidence 369999998 4667899999998632 121 23455556666654433 4556899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhhcCEEEEEeCCEEEEecCh
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 803 (1470)
|||++||||++.+|+++||||||++||+.+...+++ ++..+. + ++|+|++||+++.+..||+|++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999888876 455443 3 7899999999999888999999999999999998
Q ss_pred hhHHh
Q 000475 804 EDLIA 808 (1470)
Q Consensus 804 ~~l~~ 808 (1470)
+++..
T Consensus 225 ~~~~~ 229 (279)
T PRK13635 225 EEIFK 229 (279)
T ss_pred HHHhc
Confidence 88765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.72 Aligned_cols=195 Identities=28% Similarity=0.345 Sum_probs=162.1
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45899999999963 357888 99999999999999999999999999999999999987 6665
Q ss_pred EeEEEcCCCCCCC-ccHHHHHhcCCCC-CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHcc
Q 000475 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1470)
Q Consensus 660 ~~ayv~Q~~~i~~-~Ti~eNI~~g~~~-~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1470)
.++|++|++.++. .|++||+.++... .+++.+++++..++.+. .+.+..+||||||||++||||++.
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhc
Confidence 3799999988765 7999999986421 23344555555555432 345678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-c-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 000475 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 738 ~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 804 (1470)
+|+++||||||++||+.+...+.+ ++..+ . .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQD-LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999887765 44443 2 37899999999999765 9999999999999887654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.86 Aligned_cols=198 Identities=30% Similarity=0.433 Sum_probs=163.9
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.+ ...+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6789999999632 347899 99999999999999999999999999999999999986 5654
Q ss_pred ----EeEEEcCCCC--CCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 ----~~ayv~Q~~~--i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.++|++|+|. +++.|++|||.++.. .+. ++.+++++.+++... .+..+..||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHH
Confidence 2699999986 467899999998642 122 223444444444322 3456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 805 (1470)
||++||||++.+|+++||||||++||+.+...+++. ++.+ .+++|+|++||+++.++.||+|++|++|++++.|+.++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999998887764 4443 34899999999999987899999999999999999888
Q ss_pred HHh
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+..
T Consensus 222 ~~~ 224 (274)
T PRK13644 222 VLS 224 (274)
T ss_pred Hhc
Confidence 765
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=317.16 Aligned_cols=190 Identities=31% Similarity=0.434 Sum_probs=155.1
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468899999963 257888 99999999999999999999999999999999999986 6655
Q ss_pred -EeEEEcCCCCCCC-ccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHH
Q 000475 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1470)
.++|++|++.++. .|++||+.++.. ...+ +.+++++..++.+ .......+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-----------LLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HHhCChhhCCHHHHHHHH
Confidence 3799999998874 699999987632 1221 2233344444432 234566799999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
||||++.+|+++||||||++||+++...+.+ +++.+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999888776 454443 37899999999998875 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=321.47 Aligned_cols=186 Identities=24% Similarity=0.440 Sum_probs=159.9
Q ss_pred EEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEEEccCCCC---CcccHHHhcCcC
Q 000475 1242 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVRTNLDPL 1318 (1470)
Q Consensus 1242 ~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~L---F~gTIR~NLdp~ 1318 (1470)
|+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++. +.|++++|+||+|.+ |+.|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999999864 357889999999976 457999998532
Q ss_pred --------CC---CCHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000475 1319 --------EQ---HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387 (1470)
Q Consensus 1319 --------~~---~sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTssl 1387 (1470)
.. ..++++.++++.+++.++. ++.+ ..||+|||||++|||||+++|++|+|||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-------DRPV----GELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-------cCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 1234577888888886543 3333 359999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1388 DTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1388 D~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
|+.+...+.+.|++.. ++.|+|+++|+++.+.+ ||+|+++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998764 47899999999998876 9999999 7999999999998763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.34 Aligned_cols=197 Identities=22% Similarity=0.396 Sum_probs=162.5
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|..+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999963 357889 99999999999999999999999999999999999986 6655
Q ss_pred --EeEEEcCCCCC-CCccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 --KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 --~~ayv~Q~~~i-~~~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++|++|++.+ +..|++||+.++.. .... +.++.++..++. ...+.+..+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHH
Confidence 37999999877 56899999987532 1111 122233333332 234567789999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhhHH
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 807 (1470)
+||||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++..||+|++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999888876 454443 479999999999998889999999999999999988876
Q ss_pred h
Q 000475 808 A 808 (1470)
Q Consensus 808 ~ 808 (1470)
+
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=327.75 Aligned_cols=185 Identities=33% Similarity=0.452 Sum_probs=153.2
Q ss_pred cccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-----------------EeEEEcCCCCCC-
Q 000475 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1470)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-----------------~~ayv~Q~~~i~- 671 (1470)
...+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++| .++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 346888 99999999999999999999999999999999999986 5544 479999999887
Q ss_pred CccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEE
Q 000475 672 TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1470)
Q Consensus 672 ~~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lL 744 (1470)
+.|++||+.++.. .+ .++.+++++.+++.+.+ .....+||||||||++||||++.+|+++||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999987532 11 12344455555554333 345568999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHHh
Q 000475 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 745 Dep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 808 (1470)
||||++||+.+...+.+ ++..+. .++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 185 DEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 185 DEAFSALDPLIRREMQD-ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999887765 454442 37999999999998765 99999999999999999988865
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.94 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 67899999996420 11267899 99999999999999999999999999999999999986 5554
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++||+.++.. .+. ++.++.++..++.+ .......+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-----------KADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhcChhhCCHHH
Confidence 3799999998875 699999987532 121 12233333333322 2345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
|||++||||+..+|+++||||||++||+.+...+.+ ++..+. + ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILA-LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999887765 454443 3 7899999999999865 99999999999999998
Q ss_pred hhhHHh
Q 000475 803 YEDLIA 808 (1470)
Q Consensus 803 ~~~l~~ 808 (1470)
.+++.+
T Consensus 225 ~~~~~~ 230 (233)
T cd03258 225 VEEVFA 230 (233)
T ss_pred HHHHhc
Confidence 877654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=363.76 Aligned_cols=213 Identities=24% Similarity=0.363 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCC--CCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHH---
Q 000475 1219 KIELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1293 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~--~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L--- 1293 (1470)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999643 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcccEEEccCCCCCcc-cHHHhcCcC----CCC---CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHH
Q 000475 1294 -RSRLSIIPQDPMLFQG-TVRTNLDPL----EQH---SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1364 (1470)
Q Consensus 1294 -R~~isiIpQdp~LF~g-TIR~NLdp~----~~~---sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQr 1364 (1470)
|++++|+||+|.+|++ |+.+|++.. +.. .++++.+.++.+++.+..... ..+||+||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-----------PSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-----------cccCCHHHHHH
Confidence 6789999999999975 999999631 111 133466777777776554333 34799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCEEEEEeCCEEEEecChhHHh
Q 000475 1365 VCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1442 (1470)
Q Consensus 1365 l~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~~DrIlvL~~G~vvE~g~p~~Ll 1442 (1470)
++|||||+++|++|+|||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..||++++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998764 479999999999998889999999999999999999876
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=331.20 Aligned_cols=199 Identities=31% Similarity=0.445 Sum_probs=162.8
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 3 ~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccHH
Confidence 46899999999963 357889 99999999999999999999999999999999999986 6655
Q ss_pred ----EeEEEcCCCCCC-CccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHH
Q 000475 660 ----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~-~~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 727 (1470)
.++|++|++.++ ..|++||+.+... .+.. +.+++++.+++.+ ....+..+|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~q 142 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMKR 142 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHHH
Confidence 379999998876 4799999975221 2221 2223344343322 223556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhh
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Rv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 805 (1470)
|++||||++.+|+++||||||++||+.+...+.+. +..+ .+++|+|++||+++++.. ||+|++|++|+++..|++++
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999998887764 4443 358999999999999875 99999999999999999988
Q ss_pred HHh
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+..
T Consensus 222 ~~~ 224 (303)
T TIGR01288 222 LID 224 (303)
T ss_pred HHh
Confidence 764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=327.92 Aligned_cols=199 Identities=24% Similarity=0.401 Sum_probs=166.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.+ .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999632 357889 99999999999999999999999999999999999986 6665
Q ss_pred ------EeEEEcCCC--CCCCccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 ------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++|++|+| .+++.|++||+.++.. +. .++.+++++.+++... .+..+.+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHH
Confidence 269999998 5678899999987532 11 1234445555555432 24567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 801 (1470)
||||++|||||+.+|+++||||||++||+.+...+.+ ++..+. + ++|||++||+++++. .||+|++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK-LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999887765 454443 3 799999999999987 59999999999999999
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
+++++..
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 9988865
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=319.86 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=159.5
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCHH
Confidence 489999999997430 11467899 99999999999999999999999999999999999986 6654
Q ss_pred --------EeEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 --------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.++|++|++.++. .|++||+.++.. .+. ++.+++++.+++.+ ..+....+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----------RANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCH
Confidence 3799999988765 599999987421 121 22344445444432 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 801 (1470)
|||||++||||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++..+|++++|++|++++.+
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999887765 454442 479999999999999888999999999999876
Q ss_pred C
Q 000475 802 K 802 (1470)
Q Consensus 802 ~ 802 (1470)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 5
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=328.65 Aligned_cols=204 Identities=24% Similarity=0.402 Sum_probs=164.7
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.... ...+.+++ ||++++||+++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTP---MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCC---ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 4789999999974200 01357899 99999999999999999999999999999999999986 6655
Q ss_pred --------EeEEEcCCC--CCCCccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 660 --------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
.++|++|+| .++..|++|||.++.. ... ++.+++++.+++..+. ...+..+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCC
Confidence 269999997 4667899999987632 221 2234445555543211 245678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 800 (1470)
||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. ++.|+|++||+++++.. ||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998877765 455543 47899999999999865 999999999999999
Q ss_pred cChhhHHh
Q 000475 801 GKYEDLIA 808 (1470)
Q Consensus 801 g~~~~l~~ 808 (1470)
|+.+++..
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99888764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.52 Aligned_cols=207 Identities=23% Similarity=0.276 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeCC------------------CCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000475 1219 KIELENLLVQYNP------------------TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~------------------~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I 1280 (1470)
.|+++||+..|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4778888877754 1236999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcccEEEccCCCCCc-ccHHHhcCcC---CCCCHHHHH----HHHHHcCcHHHHHhcccccCccccC
Q 000475 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQ-GTVRTNLDPL---EQHSDQEIW----EVINKCHLAEIVRQDQRLLDAPVAE 1352 (1470)
Q Consensus 1281 DG~dI~~i~l~~LR~~isiIpQdp~LF~-gTIR~NLdp~---~~~sd~eI~----~aL~~~~L~~~v~~lp~gLdt~v~e 1352 (1470)
||. +++++|++.++. .|+++|+... ...++++.. ++++..++.+.+ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 994 457788886664 4999998531 123444433 345555554433 23
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCC
Q 000475 1353 DGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEG 1430 (1470)
Q Consensus 1353 ~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G 1430 (1470)
....||+|||||++||||++++|+||+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 345799999999999999999999999999999999999999999988753 47899999999999876 9999999999
Q ss_pred EEEEecChhHHhhcCCChH
Q 000475 1431 KVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1431 ~vvE~g~p~~Ll~~~~s~f 1449 (1470)
++++.|++++++++....|
T Consensus 220 ~i~~~g~~~~~~~~~~~~~ 238 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFL 238 (264)
T ss_pred EEEEeCCHHHHHHHhHHHH
Confidence 9999999999987643333
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.82 Aligned_cols=205 Identities=22% Similarity=0.355 Sum_probs=167.8
Q ss_pred CCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC-
Q 000475 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG- 659 (1470)
Q Consensus 587 ~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g- 659 (1470)
++..++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 16 ~~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~ 86 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGE 86 (267)
T ss_pred CCceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCE
Confidence 3457999999999963 357889 999999999999999999999999999999874 88986 5554
Q ss_pred --------------EeEEEcCCCCCCCccHHHHHhcCCCC-----C----HHHHHHHHHHhcchHHHHhccCCCcccccC
Q 000475 660 --------------KKAYVPQSSWIQTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1470)
Q Consensus 660 --------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~-----~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~ 716 (1470)
.++|++|++.++..|++||+.++... . .++.+++++.+++.+++. +..+.
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~ 159 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHE 159 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhC
Confidence 36999999998888999999976321 1 122344555555543221 12356
Q ss_pred CCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000475 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1470)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 795 (1470)
.+.+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|
T Consensus 160 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 778999999999999999999999999999999999998777765 55555557899999999999865 9999999999
Q ss_pred EEEEecChhhHHh
Q 000475 796 KIEQSGKYEDLIA 808 (1470)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1470)
++++.|+.+++..
T Consensus 239 ~i~~~g~~~~~~~ 251 (267)
T PRK14235 239 NLVEVGDTEKMFT 251 (267)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988865
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=313.31 Aligned_cols=173 Identities=27% Similarity=0.435 Sum_probs=147.9
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCC--CCHHHHhcccEEEccCC--CCCcc
Q 000475 1234 PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRLSIIPQDP--MLFQG 1309 (1470)
Q Consensus 1234 ~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~isiIpQdp--~LF~g 1309 (1470)
..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....+|++++++||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 359999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHHhcCcC---CCCC----HHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000475 1310 TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382 (1470)
Q Consensus 1310 TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDE 1382 (1470)
|+++|+... ...+ ++++.++++.+++.++.... + ..||+|||||++|||||+++|++|+|||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-------T----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-------h----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999631 1122 23567788888887654332 2 4699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh
Q 000475 1383 ATASIDTATDNVIQQTIREET-SRCTVITVAHRIPT 1417 (1470)
Q Consensus 1383 aTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~t 1417 (1470)
||++||+.+.+.+.+.|++.. +++|||+|+|+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998764 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.24 Aligned_cols=203 Identities=22% Similarity=0.369 Sum_probs=164.8
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc--C---CCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~--~---~~G~~i~~~g--- 659 (1470)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.++ | ++|++ .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~ 81 (259)
T PRK14274 11 EVYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNI 81 (259)
T ss_pred ceEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEc
Confidence 35899999999963 357889 99999999999999999999999999999987 3 58986 5544
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCCC----CHH----HHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.+++.|++||+.++... +++ +.+++++..++.+.+. ...+..+.
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~ 154 (259)
T PRK14274 82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQAL 154 (259)
T ss_pred cccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcc
Confidence 37999999998888999999886421 111 1223344444432221 23456788
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+||||||||++||||++.+|+++||||||++||+++...+.+ ++..+.+++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998777754 56665567899999999999865 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+.+++..
T Consensus 234 ~~g~~~~~~~ 243 (259)
T PRK14274 234 ECNDTNKMFS 243 (259)
T ss_pred EECCHHHHhh
Confidence 9999998865
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.49 Aligned_cols=194 Identities=23% Similarity=0.383 Sum_probs=156.9
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+... ...+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999997431 11257889 99999999999999999999999999999999999986 6665
Q ss_pred --EeEEEcCCCCCCC-ccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++|++|++.++. .|++||+.+... .. .++.+++++..++.+ ..+.+..+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHH
Confidence 3799999998876 599999976432 11 123334444444432 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
+||||++.+|+++||||||++||+.+...+.+ .+..+ .+++|+|++||+++++.. ||++++|++|++.+.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALRE-FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999877765 45444 347899999999998765 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.50 Aligned_cols=200 Identities=28% Similarity=0.411 Sum_probs=161.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.. .+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 3678999999741 357888 99999999999999999999999999999999999986 6655
Q ss_pred ---EeEEEcCCCCCCC-ccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHH
Q 000475 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1470)
Q Consensus 660 ---~~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 728 (1470)
.++|++|++.++. .|++||+.++..+ +. ++..++++..++.. ....++.+.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 3699999998875 7999999876321 21 12233334333332 012346678999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhh
Q 000475 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 729 v~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 805 (1470)
++||||++.+|++++|||||++||+.+...+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQE-EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999998777765 444443 37999999999998765 99999999999999999888
Q ss_pred HHh
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+.+
T Consensus 223 ~~~ 225 (242)
T cd03295 223 ILR 225 (242)
T ss_pred HHc
Confidence 764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=315.46 Aligned_cols=189 Identities=24% Similarity=0.379 Sum_probs=155.8
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|+++.|+. .+.+++ ||++++| +++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 468899999963 357888 9999999 999999999999999999999999999986 6665
Q ss_pred --EeEEEcCCCCCCC-ccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHH
Q 000475 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 660 --~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 729 (1470)
.++|++|++.++. .|++||+.+... .+ +++.+++++.+++.+.. .....+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHH
Confidence 3799999998876 499999987421 11 22334455555554322 245578999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 730 ~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
+||||++++|+++||||||++||+.+...+.+ .++...+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999888765 55555557999999999999875 9999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=338.56 Aligned_cols=198 Identities=26% Similarity=0.447 Sum_probs=166.0
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4789999999963 357899 99999999999999999999999999999999999986 6765
Q ss_pred ----EeEEEcCCCCC-CCccHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCch
Q 000475 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 ----~~ayv~Q~~~i-~~~Ti~eNI~~g~~-----~------~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 723 (1470)
.+|||+|++-+ ++.|++||+.++.. + +.++.+++++..++.+. ......+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-----------~~~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-----------ADRPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------hcCChhhCCH
Confidence 36999999876 67899999998752 1 12234445555554322 2345679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 724 GQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
|||||++|||||+++|+++||||||++||+.+...+.+ +++.+. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999888765 454443 57899999999999865 9999999999999999
Q ss_pred ChhhHHh
Q 000475 802 KYEDLIA 808 (1470)
Q Consensus 802 ~~~~l~~ 808 (1470)
++++++.
T Consensus 222 ~~~ev~~ 228 (402)
T PRK09536 222 PPADVLT 228 (402)
T ss_pred CHHHHhC
Confidence 9999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.75 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=164.3
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1470)
..++++|++++|++ ...+++ ||++++|++++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 46899999999963 357889 99999999999999999999999999999864 689986 5543
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCCCC----H----HHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~----~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.+++.|++||+.++.... . ++..++++.+++..++. ...+..+.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcc
Confidence 379999999988889999999763211 1 11223333333322111 23456788
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887755 56555557899999999998765 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+.+++..
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999988765
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=336.23 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=169.6
Q ss_pred cEEEEeEEEEeCCCC-CcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhccc
Q 000475 1219 KIELENLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~-~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1297 (1470)
.++++|++++|+.+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997642 3699999999999999999999999999999999999999999999999752
Q ss_pred EEEccCCCCCc-ccHHHhcCcC---CCCCHHH----HHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHH
Q 000475 1298 SIIPQDPMLFQ-GTVRTNLDPL---EQHSDQE----IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIpQdp~LF~-gTIR~NLdp~---~~~sd~e----I~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1369 (1470)
++++.+.++. .|+++|+... ...++++ +.++++.+++.++... + ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-------~----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-------P----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-------C----cccCCHHHHHHHHHHH
Confidence 2333444443 4999998642 1233333 4467777887665433 2 3569999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1370 ALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~~ 1444 (1470)
||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998753 47899999999999976 999999999999999999999864
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=358.19 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=175.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEEc----------------
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV--EPSGGRILID---------------- 1281 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~ID---------------- 1281 (1470)
|+++|++++|.. ..+|+|+||++++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999953 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcccEEEccC-CCCCcc-cHHHhcCc-C--CCCC----HHHHHHHHHHcCc
Q 000475 1282 -------GVDIS-------MIG---LQDLRSRLSIIPQD-PMLFQG-TVRTNLDP-L--EQHS----DQEIWEVINKCHL 1335 (1470)
Q Consensus 1282 -------G~dI~-------~i~---l~~LR~~isiIpQd-p~LF~g-TIR~NLdp-~--~~~s----d~eI~~aL~~~~L 1335 (1470)
|.++. ..+ ...+|++++++||+ +.+|.. |+++|+.. . ...+ ++++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 33331 111 23467889999998 567764 99999853 1 1122 2356677888887
Q ss_pred HHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEec
Q 000475 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAH 1413 (1470)
Q Consensus 1336 ~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~--~~~TVI~IAH 1413 (1470)
.+... .. ..+||||||||++|||||+.+|++|+|||||++||+++.+.+.+.|++.. .++|||+|+|
T Consensus 159 ~~~~~-------~~----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRIT-------HI----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhh-------cC----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 65432 22 34699999999999999999999999999999999999999999998863 3789999999
Q ss_pred Chhhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000475 1414 RIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1414 Rl~ti~~-~DrIlvL~~G~vvE~g~p~~Ll~ 1443 (1470)
+++.+.. ||+|++|++|++++.|+++++++
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999976 99999999999999999988865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.43 Aligned_cols=202 Identities=23% Similarity=0.369 Sum_probs=163.9
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCC--cC---CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PR---ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~--~~---~~G~~i~~~g---- 659 (1470)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.. +| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5889999999963 357888 9999999999999999999999999999985 35 48986 5544
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.+++.|++||+.++... ++ ++.+++++.+++...+. +..+..+.+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 37999999999889999999875321 11 12223344444432221 234567889
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888865 55555557899999999998765 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T PRK14239 228 YNDTKQMFM 236 (252)
T ss_pred eCCHHHHHh
Confidence 999988865
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.09 Aligned_cols=202 Identities=24% Similarity=0.351 Sum_probs=164.6
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g---- 659 (1470)
.++++|++|+|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 4889999999963 357889 99999999999999999999999999999986 478986 5544
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.+++.|++||+.++... +. ++.+++++.+++..+. ....+..+.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhh
Confidence 37899999998889999999876421 11 2233444444443211 1123467789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877765 45555567899999999999765 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999988765
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=322.40 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=165.0
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g--- 659 (1470)
..++++|+++.|++ .+.+++ ||++++||+++|+|+||||||||+++|+|..+| ++|++ .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 46899999999863 357889 999999999999999999999999999999875 79986 5543
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.++..|++||+.++.. .+.+ +.+++++.+++..++ ....+....+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhh
Confidence 3799999999888999999998632 1221 223344444442211 1224567789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++++.. ||+|++|++|++++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 55555557999999999999865 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+++++.+
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14268 234 FGQTRQIFH 242 (258)
T ss_pred eCCHHHHhc
Confidence 999988865
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=318.28 Aligned_cols=197 Identities=29% Similarity=0.417 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|++ .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999863 357889 99999999999999999999999999999999999986 6654
Q ss_pred -----EeEEEcCCCCCCC-ccHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~~-~Ti~eNI~~g~~----~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++||+.++.. .+.. +..++++..++. ...+.+..+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHH
Confidence 3699999988764 699999988631 1221 222333333332 22345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 803 (1470)
|||++||||++.+|++++|||||++||+++...+.+ ++..+. +++|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 999999999999999999999999999999887765 455443 47999999999999875 999999999999999999
Q ss_pred hhHHh
Q 000475 804 EDLIA 808 (1470)
Q Consensus 804 ~~l~~ 808 (1470)
+++.+
T Consensus 221 ~~~~~ 225 (240)
T PRK09493 221 QVLIK 225 (240)
T ss_pred HHHhc
Confidence 88765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.65 Aligned_cols=199 Identities=25% Similarity=0.326 Sum_probs=162.6
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999963 357888 99999999999999999999999999999999999986 6554
Q ss_pred --------EeEEEcCCCCCCC-ccHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 660 --------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 660 --------~~ayv~Q~~~i~~-~Ti~eNI~~g~~----~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
.++|++|++.++. .|++||+.++.. .+.. +..+.++..++.+ ....+..+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCC
Confidence 3789999998876 499999987521 1221 2223334333322 2234567999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. + ++|+|++||+++++.. ||+|++|++|++++
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK-LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999999877765 454443 2 7899999999999875 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++.+
T Consensus 225 ~g~~~~~~~ 233 (269)
T PRK11831 225 HGSAQALQA 233 (269)
T ss_pred eCCHHHHhc
Confidence 999998875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=336.13 Aligned_cols=188 Identities=31% Similarity=0.444 Sum_probs=156.3
Q ss_pred cccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------------------EeEEEcCCC
Q 000475 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQSS 668 (1470)
Q Consensus 611 ~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------------------~~ayv~Q~~ 668 (1470)
...+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++| .++||+|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 456788 99999999999999999999999999999999999986 6665 379999999
Q ss_pred CCCC-ccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHccCCC
Q 000475 669 WIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1470)
Q Consensus 669 ~i~~-~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1470)
.+++ .|++||+.++... +. ++.+++++..+|... ......+|||||||||+|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9876 7999999987432 11 233445555555432 234567899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhhHHhhc
Q 000475 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQ 810 (1470)
Q Consensus 741 i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 810 (1470)
|+|||||||+||+.+...+++.+..... .++|+|+||||++++. .||+|++|++|++++.|+.+++...+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 9999999999999998888775543323 2799999999999975 59999999999999999999987633
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.55 Aligned_cols=202 Identities=26% Similarity=0.379 Sum_probs=164.9
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCC---CcC--CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~---~~~--~~G~~i~~~g---- 659 (1470)
.++++|+++.|+. ...+++ ||++++|++++|+|+||||||||+++|+|. .+| ++|++ .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999963 347888 999999999999999999999999999996 454 48976 5543
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.++..|++||+.++... + +++.+++++.+++.++++ +..++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 37999999998888999999876321 1 123344555555543222 234567889
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+ .++.+.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 55555567999999999999865 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999998875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=321.27 Aligned_cols=204 Identities=23% Similarity=0.358 Sum_probs=165.9
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC--
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g-- 659 (1470)
+..++++|++++|+. ...+++ ||++++|++++|+|+||||||||+++|+|.++ |++|++ .++|
T Consensus 11 ~~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTD 81 (269)
T ss_pred CceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEE
Confidence 346999999999963 357889 99999999999999999999999999999987 588986 5554
Q ss_pred -------------EeEEEcCCCCCCCccHHHHHhcCCCCC------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.++..|++||+.++.... +++.+++++.+++...++ ........+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 154 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYS 154 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCccc
Confidence 379999999988789999999875321 122333444444322221 234567789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeC-----
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD----- 794 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~----- 794 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+ .++.+.+++|+|++||+++++.. ||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccc
Confidence 99999999999999999999999999999999999888765 55555567899999999998865 999999996
Q ss_pred ------CEEEEecChhhHHh
Q 000475 795 ------GKIEQSGKYEDLIA 808 (1470)
Q Consensus 795 ------G~i~~~g~~~~l~~ 808 (1470)
|++++.|+.+++..
T Consensus 234 ~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 234 GSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccceEEEeCCHHHHHh
Confidence 67899999988865
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.83 Aligned_cols=165 Identities=28% Similarity=0.551 Sum_probs=147.4
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1470)
++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++|.
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4688999999743 2357889 99999999999999999999999999999999999986 77763
Q ss_pred ---eEEEcCCCCCCCccHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHHHHHcc
Q 000475 661 ---KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1470)
Q Consensus 661 ---~ayv~Q~~~i~~~Ti~eNI~~g~~~~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1470)
++|++|++++++.|++||+ +.+||||||||++||||++.
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 6999999999889999998 46899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 000475 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 738 ~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 801 (1470)
+|+++||||||++||+++.+.+++ .+..+.+++|+|++||++++++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999887765 455555689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=310.95 Aligned_cols=188 Identities=20% Similarity=0.322 Sum_probs=160.3
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
|+++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.... ++.+++
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999964 3344 599999999999999999999999999999999999999999999987542 456999
Q ss_pred EccCCC-CCcccHHHhcCcCC-CC-CHHHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000475 1300 IPQDPM-LFQGTVRTNLDPLE-QH-SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1300 IpQdp~-LF~gTIR~NLdp~~-~~-sd~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1376 (1470)
+||++. +|..|+++|+.... .+ .++++.++++.+++.+... ..+.+||+|||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 46789999996422 11 3567788888888865533 2345799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCEEE
Q 000475 1377 ILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVIDNDLVL 1425 (1470)
Q Consensus 1377 ILlLDEaTsslD~~Td~~Iq~~I~~~-~~~~TVI~IAHRl~ti~~~DrIl 1425 (1470)
+++|||||+++|+.+.+.+.+.|++. .+++|+|+|+|+++.+.++|-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 46799999999999999999764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=332.18 Aligned_cols=200 Identities=30% Similarity=0.439 Sum_probs=164.4
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC-------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------- 659 (1470)
...|+++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 39 ~~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcch
Confidence 356999999999963 357889 99999999999999999999999999999999999986 7766
Q ss_pred -----EeEEEcCCCCCC-CccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHH
Q 000475 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1470)
Q Consensus 660 -----~~ayv~Q~~~i~-~~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 726 (1470)
.+||+||++.++ ..|++||+.+... .+. ++.+++++.+++.+ ....+..+||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~k 178 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMK 178 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHH
Confidence 379999998875 5799999985321 121 12233334333322 12355679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 000475 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1470)
Q Consensus 727 qRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 804 (1470)
||++|||||.++|+++||||||++||+.+...+++. +..+ .+|+|||++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~ 257 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999998888764 4444 358999999999999875 9999999999999999999
Q ss_pred hHHh
Q 000475 805 DLIA 808 (1470)
Q Consensus 805 ~l~~ 808 (1470)
++..
T Consensus 258 ~l~~ 261 (340)
T PRK13536 258 ALID 261 (340)
T ss_pred HHHh
Confidence 8865
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.44 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=154.7
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------E
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------~ 660 (1470)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 468899999863 357888 99999999999999999999999999999999999996 7766 4
Q ss_pred eEEEcCCCCCCC-ccHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHHHH
Q 000475 661 KAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1470)
Q Consensus 661 ~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1470)
++|++|++.++. .|++||+.++... . +++.++.++..++.. .......+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHH
Confidence 799999988765 5999999875321 1 122333344444332 23456779999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 733 RAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
||++.+|+++||||||++||+.+...+.+. ++.+ .+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999998887764 4443 357899999999999865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=321.28 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=163.6
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|+++.|++ ...+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccccc
Confidence 45899999999963 357888 99999999999999999999999999999999999986 5554
Q ss_pred ------------------EeEEEcCCCCCCC-ccHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHHhccCCCcc
Q 000475 660 ------------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLS 712 (1470)
Q Consensus 660 ------------------~~ayv~Q~~~i~~-~Ti~eNI~~g~----~~~~----~~y~~v~~~~~l~~d~~~l~~g~~t 712 (1470)
.++|++|++.++. .|++||+.++. ..+. ++..++++..++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------- 145 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------- 145 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh---------
Confidence 3799999998876 59999998742 1111 1223333333332211
Q ss_pred cccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEE
Q 000475 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1470)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~ 790 (1470)
.+....+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. +++|+|+|||+++++.. ||+|+
T Consensus 146 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 146 -QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 145678999999999999999999999999999999999999888875 455443 48999999999999886 99999
Q ss_pred EEeCCEEEEecChhhHHh
Q 000475 791 VMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~ 808 (1470)
+|++|++++.|+++++..
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999988765
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=319.76 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=167.0
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1470)
-++++|+++.|+. ...+++ ||++++||+++|+|+||||||||+++|+|..+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEecc
Confidence 4789999999963 357889 999999999999999999999999999999875 78986 5544
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.++..|++||+.|+... +. ++.+++++.+++..+++. ..+.+..+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCccc
Confidence 37999999998889999999986421 11 233455566655433321 23467789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999888765 56555557899999999999875 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14270 227 FNKTEKIFL 235 (251)
T ss_pred eCCHHHHhc
Confidence 999988865
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=322.04 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=168.5
Q ss_pred CccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC--
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g-- 659 (1470)
...++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 18 ~~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~ 88 (267)
T PRK14237 18 EIALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGID 88 (267)
T ss_pred CeEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEE
Confidence 346999999999953 357899 99999999999999999999999999999986 478986 5544
Q ss_pred -------------EeEEEcCCCCCCCccHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCC
Q 000475 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1470)
Q Consensus 660 -------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g 718 (1470)
.++|++|++.++..|++|||.++... ++ ++..++++.+++.+++. +..+..+
T Consensus 89 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~ 161 (267)
T PRK14237 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSA 161 (267)
T ss_pred cccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCc
Confidence 37999999998889999999986321 11 23344555555543332 2345778
Q ss_pred CCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
.+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999877765 55555567899999999999865 999999999999
Q ss_pred EEecChhhHHh
Q 000475 798 EQSGKYEDLIA 808 (1470)
Q Consensus 798 ~~~g~~~~l~~ 808 (1470)
++.|+.+++..
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999988865
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=325.79 Aligned_cols=201 Identities=26% Similarity=0.384 Sum_probs=166.4
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCC---CcEEEECC-----
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG----- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~---G~~i~~~g----- 659 (1470)
..++++|++++|+.. ..+.+++ ||++++||+++|+|+||||||||+++|+|.++|++ |++ .++|
T Consensus 4 ~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCc
Confidence 468999999999642 2357888 99999999999999999999999999999999987 775 6655
Q ss_pred --------EeEEEcCCCC--CCCccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 660 --------KKAYVPQSSW--IQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 660 --------~~ayv~Q~~~--i~~~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
.++|++|+|+ +++.|++|||.|+... +. ++.+++++.+++.+. .+....+||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS 145 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY-----------IDSEPANLS 145 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCC
Confidence 3699999984 5678999999986432 22 234445555555432 335567999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1470)
||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. + ++|||++||+++.+..||+|++|++|++++.
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999888876 444443 3 7899999999999878999999999999999
Q ss_pred cChhhHHh
Q 000475 801 GKYEDLIA 808 (1470)
Q Consensus 801 g~~~~l~~ 808 (1470)
|+.+++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99988765
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=326.44 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=163.3
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+.... ...+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTP---FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCCc---cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccc
Confidence 3789999999974300 01357889 99999999999999999999999999999999999986 6655
Q ss_pred --------EeEEEcCCC--CCCCccHHHHHhcCCC---CCHHH----HHHHHHHhcchHHHHhccCCCcccccCCCCCCc
Q 000475 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1470)
Q Consensus 660 --------~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~~~----y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 722 (1470)
.++|++|++ .+++.|++|||.++.. .+.+. .+++++..++..+ ....+..+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 147 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELS 147 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 269999997 5777899999987632 12221 2233333333211 2345678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 000475 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1470)
Q Consensus 723 GGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 800 (1470)
||||||++||||++.+|+++||||||++||+.+...+.+. +..+. .++|||++||+++++.. ||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998877654 44443 47899999999999865 999999999999999
Q ss_pred cChhhHHh
Q 000475 801 GKYEDLIA 808 (1470)
Q Consensus 801 g~~~~l~~ 808 (1470)
|+.+++..
T Consensus 227 g~~~~~~~ 234 (280)
T PRK13649 227 GKPKDIFQ 234 (280)
T ss_pred CCHHHHhc
Confidence 99888765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=320.47 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 257889 99999999999999999999999999999999999986 4443
Q ss_pred ------------EeEEEcCCCCCCC-ccHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHHhccCCCcccccCCC
Q 000475 660 ------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~-~Ti~eNI~~g~----~~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g 718 (1470)
.++|++|++.++. .|++||+.++. ..+. ++.++.++..++. ...+..+
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCCh
Confidence 3799999988765 79999998742 1121 1222333333332 1234567
Q ss_pred CCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCE
Q 000475 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1470)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 796 (1470)
.+||||||||++||||+..+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++++.. ||+|++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999887765 454443 47899999999999875 99999999999
Q ss_pred EEEecChhhHHh
Q 000475 797 IEQSGKYEDLIA 808 (1470)
Q Consensus 797 i~~~g~~~~l~~ 808 (1470)
+++.|+.+++.+
T Consensus 222 i~~~~~~~~~~~ 233 (250)
T PRK11264 222 IVEQGPAKALFA 233 (250)
T ss_pred EEEeCCHHHHhc
Confidence 999999988765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.86 Aligned_cols=202 Identities=25% Similarity=0.373 Sum_probs=164.3
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCC-----CCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~~i~~~g---- 659 (1470)
.++++|++|+|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|. +|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5889999999963 357889 9999999999999999999999999999999987 5875 4432
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----CHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.+++.|++||+.++... .++ +.+++++..++.+.++ ...+..+.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCccc
Confidence 47999999998888999999986432 111 1222233333322221 234577889
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
|||||||||+||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999887765 56555567999999999999876 89999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999988765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=311.86 Aligned_cols=188 Identities=27% Similarity=0.403 Sum_probs=154.2
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
|+++|++++|+.. . .+ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4688999998632 1 26 99999999999999999999999999999999999987 6766
Q ss_pred -EeEEEcCCCCCCC-ccHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHH
Q 000475 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 -~~ayv~Q~~~i~~-~Ti~eNI~~g~~~-------~~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1470)
.++|++|++.++. .|++||+.++... ++++.+++++.+++.+.. .....+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-----------KRLPGELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHH
Confidence 3799999998876 5999999876421 123344555555554333 2445689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 801 (1470)
||||++.+|+++||||||++||+++...+.+ ++..+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999887765 454443 37899999999999876 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=318.78 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=162.5
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHHH
Confidence 789999999963 257888 99999999999999999999999999999999999986 6654
Q ss_pred ----EeEEEcCCCCCCCc-cHHHHHhcCCCCC---------------HHHHHHHHHHhcchHHHHhccCCCcccccCCCC
Q 000475 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~eNI~~g~~~~---------------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 719 (1470)
.++|++|++.++.. |++||+.++...+ +++.++.++..++ .........
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChh
Confidence 27899999988765 9999998864211 1122222222222 223456778
Q ss_pred CCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999887765 56555557899999999999875 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9999888754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=318.87 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=163.3
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1470)
.++++|++++|++ .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4789999999963 257888 999999999999999999999999999999974 68986 6655
Q ss_pred ---------EeEEEcCCCCC-CCccHHHHHhcCCCC-----CH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 ---------KKAYVPQSSWI-QTGTIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 ---------~~ayv~Q~~~i-~~~Ti~eNI~~g~~~-----~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.+ ++.|++||+.++... .. ++.+++++.+++.+.++ ...+....+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 36999999875 568999999876421 11 12233444444432111 123466789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~ 799 (1470)
|||||||||+||||+.++|++++|||||++||+.+...+.+ ++..+.+++|+|++||+++++. .||+|++|++|++.+
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES-LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999888765 4555556799999999999986 499999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14247 226 WGPTREVFT 234 (250)
T ss_pred ECCHHHHHc
Confidence 999988865
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=314.67 Aligned_cols=191 Identities=30% Similarity=0.380 Sum_probs=154.1
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+... ...+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 67899999996420 12357888 99999999999999999999999999999999999986 5553
Q ss_pred -------EeEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 -------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 -------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+ .......+||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHH
Confidence 3799999988774 699999987421 221 22333444444332 234566789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 798 (1470)
||||++||||++.+|+++||||||++||+++...+.+ ++..+. .++|+|++||+++++..+|+|++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999887765 454443 378999999999998889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=319.84 Aligned_cols=203 Identities=24% Similarity=0.375 Sum_probs=166.8
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCc-----CCCCcEEEECC---
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~~i~~~g--- 659 (1470)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..+ |++|++ .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 35899999999963 257889 99999999999999999999999999999875 378986 5544
Q ss_pred ------------EeEEEcCCCCCCCccHHHHHhcCCCCC------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCC
Q 000475 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1470)
Q Consensus 660 ------------~~ayv~Q~~~i~~~Ti~eNI~~g~~~~------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~L 721 (1470)
.++|++|++.+++.|++||+.++.... +++.+++++.+++..++.. ..+..+.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccC
Confidence 379999999988789999999864321 1233444555555443321 235678899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEe-------
Q 000475 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1470)
Q Consensus 722 SGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~------- 793 (1470)
|||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|||++||+++++.. ||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999887765 56555557899999999999875 99999998
Q ss_pred --CCEEEEecChhhHHh
Q 000475 794 --DGKIEQSGKYEDLIA 808 (1470)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1470)
+|++++.|+.+++..
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=320.16 Aligned_cols=198 Identities=19% Similarity=0.336 Sum_probs=161.6
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~-------- 660 (1470)
.++++|+++.|+. .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|.
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999963 357889 99999999999999999999999999999999999986 66652
Q ss_pred ------eEEEcCCCCCCC-ccHHHHHhcCCCC----------------C---H---HHHHHHHHHhcchHHHHhccCCCc
Q 000475 661 ------KAYVPQSSWIQT-GTIRENILFGKDM----------------R---Q---SFYEEVLEGCALNQDIEMWADGDL 711 (1470)
Q Consensus 661 ------~ayv~Q~~~i~~-~Ti~eNI~~g~~~----------------~---~---~~y~~v~~~~~l~~d~~~l~~g~~ 711 (1470)
++|++|++.++. .|++||+.++... + . ++.++.++..++ .
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~ 144 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------L 144 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------h
Confidence 588999998876 5999999986310 0 0 111222222222 2
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhh-cCE
Q 000475 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDA-ADL 788 (1470)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~ 788 (1470)
...+.+..+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+. + ++|+|++||+++++.. ||+
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 23457788999999999999999999999999999999999999887765 444443 3 7899999999999865 999
Q ss_pred EEEEeCCEEEEecChhhHHh
Q 000475 789 VLVMKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 789 i~~l~~G~i~~~g~~~~l~~ 808 (1470)
+++|++|++++.|+.+++..
T Consensus 224 i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 224 IYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEEECCeEEecCCHHHHhh
Confidence 99999999999999888754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.89 Aligned_cols=197 Identities=25% Similarity=0.401 Sum_probs=162.3
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|++ .+.+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 789999999963 357889 99999999999999999999999999999999999986 6665
Q ss_pred ---EeEEEcCCCCCCCc-cHHHHHhcCCC-----C---C---HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchH
Q 000475 660 ---KKAYVPQSSWIQTG-TIRENILFGKD-----M---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 ---~~ayv~Q~~~i~~~-Ti~eNI~~g~~-----~---~---~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 724 (1470)
.++|++|++.++.. |+.||+.++.. + . .++.+++++.+++.+. .......||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHH
Confidence 27999999877654 99999998631 1 1 1223344444444322 33567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 725 QkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 802 (1470)
||||++||||+..+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|++...|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR-LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 9999999999999999999999999999999877765 444443 47999999999999865 99999999999999999
Q ss_pred hhhHHh
Q 000475 803 YEDLIA 808 (1470)
Q Consensus 803 ~~~l~~ 808 (1470)
++++..
T Consensus 222 ~~~~~~ 227 (255)
T PRK11231 222 PEEVMT 227 (255)
T ss_pred HHHhcC
Confidence 888754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=316.04 Aligned_cols=197 Identities=27% Similarity=0.454 Sum_probs=160.1
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468899999963 357889 99999999999999999999999999999999999986 6654
Q ss_pred ----EeEEEcCCCCCCCc-cHHHHHhcCCCCC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHHHH
Q 000475 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 ----~~ayv~Q~~~i~~~-Ti~eNI~~g~~~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1470)
.++|++|++.++.. |++||+.++.... .+.++++++..+. .....+....+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHH
Confidence 37999999988764 9999998764221 1222333332221 112235677899999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhhHH
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 731 LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 807 (1470)
||||++++|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++++.. ||+|+++++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGR-VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999887765 454443 27899999999999885 9999999999999999988873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=318.11 Aligned_cols=202 Identities=24% Similarity=0.372 Sum_probs=164.2
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1470)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..++ ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 4789999999963 257888 999999999999999999999999999998763 68986 5554
Q ss_pred -----------EeEEEcCCCCCCCccHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~~Ti~eNI~~g~~~----~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.+++.|++||+.++... . .++.+++++.+++.+++. ...+..+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 37999999988889999999986421 1 122233344444433222 234567789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 799 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887754 56555567899999999998765 99999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999888765
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=322.62 Aligned_cols=201 Identities=27% Similarity=0.453 Sum_probs=164.9
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|.++|++|++ .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999632 2457889 99999999999999999999999999999999999986 6654
Q ss_pred -----EeEEEcCCC--CCCCccHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 -----~~ayv~Q~~--~i~~~Ti~eNI~~g~~---~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|+| .+++.|++|||.++.. ++.+ +.+++++..++.+. .+.+..+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHH
Confidence 369999998 3567899999998632 2222 23344444554332 345668999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEcCCcchhhhcCEEEEEeCCEEEEecCh
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 803 (1470)
|||++||||++.+|+++||||||++||+.+...+++ .+..+. + ++|+|++||+++.+..||+|++|++|++.+.|+.
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999888876 454443 3 4899999999998878999999999999999998
Q ss_pred hhHHh
Q 000475 804 EDLIA 808 (1470)
Q Consensus 804 ~~l~~ 808 (1470)
+++..
T Consensus 227 ~~~~~ 231 (271)
T PRK13632 227 KEILN 231 (271)
T ss_pred HHHhc
Confidence 88764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=326.17 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=162.1
Q ss_pred ccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-------- 659 (1470)
..++++|++++|+.... ...+.+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 5 ~~l~i~nl~~~~~~~~~---~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP---FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCc---cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccccc
Confidence 35899999999964300 01357899 99999999999999999999999999999999999986 5543
Q ss_pred ----------EeEEEcCCCC--CCCccHHHHHhcCCCC---CHH----HHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 ----------KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 ----------~~ayv~Q~~~--i~~~Ti~eNI~~g~~~---~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|+|. +++.|++||+.|+... ..+ +.+++++..++.. ...+....+
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~----------~~~~~~~~~ 150 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----------DYVKRSPFE 150 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhcCChhh
Confidence 3699999984 5678999999986421 111 1122233222211 123466789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
||||||||++||||++.+|+++||||||++||+.+...+++ ++..+. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999877765 454443 37899999999998765 999999999999
Q ss_pred EEecChhhHHh
Q 000475 798 EQSGKYEDLIA 808 (1470)
Q Consensus 798 ~~~g~~~~l~~ 808 (1470)
++.|+.+++..
T Consensus 230 ~~~g~~~~~~~ 240 (289)
T PRK13645 230 ISIGSPFEIFS 240 (289)
T ss_pred EEeCCHHHHhc
Confidence 99999888754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=315.46 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=157.4
Q ss_pred EEEEeEEEEeCCCCCcceeeeeEEeeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEcCEeCCCCCHHHHhcccEE
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~isi 1299 (1470)
+.++|++.+|+. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... .....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888888865 4699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EccCCCCCcccHHHhcCcC---CCCCH----HHHHHHHHHcCcHHHHHhcccccCccccCCCCCCChhHHHHHHHHHHHc
Q 000475 1300 IPQDPMLFQGTVRTNLDPL---EQHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372 (1470)
Q Consensus 1300 IpQdp~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1372 (1470)
+..+.|+++|+... ...+. +++.++++..++.+. ++..+ ..||+|||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDLPV----KTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhCCh----hhCCHHHHHHHHHHHHHh
Confidence 22356999998532 11222 235556666666443 34444 469999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCEEEEEeCCEEEEec
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYD 1436 (1470)
Q Consensus 1373 r~~~ILlLDEaTsslD~~Td~~Iq~~I~~~~-~~~TVI~IAHRl~ti~~-~DrIlvL~~G~vvE~g 1436 (1470)
++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998764 46899999999999865 9999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=318.18 Aligned_cols=197 Identities=26% Similarity=0.436 Sum_probs=162.7
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECCE---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g~--------- 660 (1470)
++++|++++|+. ...+++ ||++++|++++|+|+||||||||+++|+|+.+|++|++ .++|.
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 788999999963 357889 99999999999999999999999999999999999986 66652
Q ss_pred ----eEEEcCCCCC-CCccHHHHHhcCCC-CC------HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHHHHH
Q 000475 661 ----KAYVPQSSWI-QTGTIRENILFGKD-MR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1470)
Q Consensus 661 ----~ayv~Q~~~i-~~~Ti~eNI~~g~~-~~------~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 728 (1470)
++|++|++.+ ++.|++||+.++.. .. +++.+++++..++.. ..+....+||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHH
Confidence 6899999877 67899999988642 11 122344444444432 2235678999999999
Q ss_pred HHHHHHHc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEE
Q 000475 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1470)
Q Consensus 729 v~LARAl~------~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~ 799 (1470)
++||||++ .+|+++||||||++||+.+...+.+ ++..+. +++|||++||+++.+. .||+|++|++|++++
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999 5999999999999999999887765 455443 4789999999999987 499999999999999
Q ss_pred ecChhhHHh
Q 000475 800 SGKYEDLIA 808 (1470)
Q Consensus 800 ~g~~~~l~~ 808 (1470)
.|+++++..
T Consensus 222 ~~~~~~~~~ 230 (258)
T PRK13548 222 DGTPAEVLT 230 (258)
T ss_pred eCCHHHHhC
Confidence 999888764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=313.07 Aligned_cols=187 Identities=28% Similarity=0.389 Sum_probs=152.5
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.. ...+++ ||++++|++++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4678999999632 357888 99999999999999999999999999999999999986 5654
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++||+.++.. ... ++.++.++.+++.+. ......+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHH
Confidence 3799999998776 699999987632 111 233444555555432 234557899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
|||++||||++.+|+++||||||++||+++...+.+. +..+ .+++|+|++||+++.+.. ||+|++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL-LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999998877654 4444 357999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=319.24 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=162.8
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcC-----CCCcEEEECC----
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~~i~~~g---- 659 (1470)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4789999999963 357889 999999999999999999999999999999987 48986 5543
Q ss_pred -----------EeEEEcCCCCCCC-ccHHHHHhcCCCC-----CHH----HHHHHHHHhcchHHHHhccCCCcccccCCC
Q 000475 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1470)
Q Consensus 660 -----------~~ayv~Q~~~i~~-~Ti~eNI~~g~~~-----~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g 718 (1470)
.++|++|++.++. .|++||+.++... ..+ +.+++++..++..+++ ...+...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 3699999998876 5999999875321 111 1223333333322221 1245677
Q ss_pred CCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
.+||||||||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE-LLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887765 45555557999999999999765 999999999999
Q ss_pred EEecChhhHHh
Q 000475 798 EQSGKYEDLIA 808 (1470)
Q Consensus 798 ~~~g~~~~l~~ 808 (1470)
++.|+.+++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999988865
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=335.40 Aligned_cols=209 Identities=24% Similarity=0.362 Sum_probs=165.6
Q ss_pred cEEEeeeEEEeCCCccc----------------cCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCC
Q 000475 590 AIDIEAGEYAWDAREEN----------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~----------------~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 652 (1470)
.|+++|++..|.+.... .....+.+++ ||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 47777777777553210 0012346888 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------EeEEEcCCCCCCC-ccHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHHhcc
Q 000475 653 AAIKVHG-----------------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWA 707 (1470)
Q Consensus 653 ~~i~~~g-----------------~~ayv~Q~~~i~~-~Ti~eNI~~g~~~---~~----~~y~~v~~~~~l~~d~~~l~ 707 (1470)
++ .++| .++||+|++.++. .|++|||.++... +. ++..++++.++|.+.
T Consensus 84 ~I-~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~----- 157 (400)
T PRK10070 84 QV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY----- 157 (400)
T ss_pred EE-EECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh-----
Confidence 86 6654 4799999998875 6999999986432 21 233445555555432
Q ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-
Q 000475 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA- 785 (1470)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~- 785 (1470)
......+|||||||||+|||||+.+|+++||||||++||+.+...+.+.+..... .++|+|+|||+++++..
T Consensus 158 ------~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 158 ------AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred ------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 2345679999999999999999999999999999999999998888764433222 47999999999998764
Q ss_pred cCEEEEEeCCEEEEecChhhHHhhc
Q 000475 786 ADLVLVMKDGKIEQSGKYEDLIADQ 810 (1470)
Q Consensus 786 ~d~i~~l~~G~i~~~g~~~~l~~~~ 810 (1470)
||+|++|++|++++.|+++++...+
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999999999999987643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=316.38 Aligned_cols=198 Identities=26% Similarity=0.362 Sum_probs=160.5
Q ss_pred cEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g--------- 659 (1470)
.++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYGA--------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEECC--------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccc
Confidence 3788999999963 257889 99999999999999999999999999999999999986 5654
Q ss_pred ----------EeEEEcCCCCCCC-ccHHHHHhcCC-C---CCH----HHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 ----------KKAYVPQSSWIQT-GTIRENILFGK-D---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 ----------~~ayv~Q~~~i~~-~Ti~eNI~~g~-~---~~~----~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.++. .|++|||.++. + ... ++..+.++..++. ...+....+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~ 141 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-----------PYADRFPLH 141 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhh
Confidence 3699999998775 59999997431 1 111 1222233333332 234456679
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 798 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+. +++|+|++||+++++.. ||++++|++|+++
T Consensus 142 LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999887765 455443 48999999999999875 9999999999999
Q ss_pred EecChhhHHh
Q 000475 799 QSGKYEDLIA 808 (1470)
Q Consensus 799 ~~g~~~~l~~ 808 (1470)
+.|+++++.+
T Consensus 221 ~~~~~~~~~~ 230 (242)
T PRK11124 221 EQGDASCFTQ 230 (242)
T ss_pred EeCCHHHhcC
Confidence 9999887643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=327.65 Aligned_cols=217 Identities=22% Similarity=0.352 Sum_probs=169.5
Q ss_pred CccEEEeeeEEEeCCCccc-----cCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC--
Q 000475 588 DVAIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~-----~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g-- 659 (1470)
+..++++|++++|+..... .......+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV-AWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE-EECCEE
Confidence 3568999999999642100 0012357888 99999999999999999999999999999999999986 5554
Q ss_pred --------------EeEEEcCCCC--CC-CccHHHHHhcCC-----CCCHH----HHHHHHHHhcchHHHHhccCCCccc
Q 000475 660 --------------KKAYVPQSSW--IQ-TGTIRENILFGK-----DMRQS----FYEEVLEGCALNQDIEMWADGDLSV 713 (1470)
Q Consensus 660 --------------~~ayv~Q~~~--i~-~~Ti~eNI~~g~-----~~~~~----~y~~v~~~~~l~~d~~~l~~g~~t~ 713 (1470)
.++||+|+|. ++ ..||.|||.++. ..+.+ +.+++++..++.++ .
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~ 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------L 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------H
Confidence 4799999983 44 579999997642 12322 22344444444322 2
Q ss_pred ccCCCCCCchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEE
Q 000475 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVL 790 (1470)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~ 790 (1470)
.+..+.+|||||||||+|||||+.+|+++|+||||++||+.+...+.+. ++.+. .+.|+|+||||++.+.. ||+|+
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~ 233 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVL 233 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3456789999999999999999999999999999999999998888764 44443 37899999999999875 99999
Q ss_pred EEeCCEEEEecChhhHHhhchhHHHH
Q 000475 791 VMKDGKIEQSGKYEDLIADQNSELVR 816 (1470)
Q Consensus 791 ~l~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1470)
+|++|+|++.|+.+++.++....+..
T Consensus 234 vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 234 VMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999999988644434433
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=320.10 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=165.2
Q ss_pred CCccEEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC------
Q 000475 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1470)
Q Consensus 587 ~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g------ 659 (1470)
+...++++|++++|+. ...+++ ||++++|++++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~~~l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~ 74 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHY 74 (265)
T ss_pred cccEEEEEEEEEEECC--------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhC
Confidence 3457999999999973 357888 99999999999999999999999999999999999986 6665
Q ss_pred -------EeEEEcCCCCCC-CccHHHHHhcCC-CC-------C---HHHHHHHHHHhcchHHHHhccCCCcccccCCCCC
Q 000475 660 -------KKAYVPQSSWIQ-TGTIRENILFGK-DM-------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1470)
Q Consensus 660 -------~~ayv~Q~~~i~-~~Ti~eNI~~g~-~~-------~---~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 720 (1470)
.++|++|++.++ +.|++||+.++. +. . .++.+++++..++.+. ....+.+
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 143 (265)
T PRK10253 75 ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDT 143 (265)
T ss_pred CHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCccc
Confidence 269999998775 579999998752 11 1 1233344444444322 3456789
Q ss_pred CchHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000475 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1470)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 797 (1470)
||||||||++||||++.+|+++||||||++||+.+...+.+. +..+. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 222 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL-LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKI 222 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998888764 44443 37899999999998765 999999999999
Q ss_pred EEecChhhHHh
Q 000475 798 EQSGKYEDLIA 808 (1470)
Q Consensus 798 ~~~g~~~~l~~ 808 (1470)
++.|+.+++..
T Consensus 223 ~~~g~~~~~~~ 233 (265)
T PRK10253 223 VAQGAPKEIVT 233 (265)
T ss_pred EEeCCHHHHhh
Confidence 99999888764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=313.22 Aligned_cols=186 Identities=26% Similarity=0.424 Sum_probs=152.1
Q ss_pred EEEeeeEEEeCCCccccCCCcccccC-ceEeeCCcEEEEEcCCCCChHHHHHHHhCCCcCCCCcEEEECC----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~i~~~g---------- 659 (1470)
++++|++++|+.+ ...+++ ||++++|++++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6789999999522 357889 99999999999999999999999999999999999986 5554
Q ss_pred ------EeEEEcCCCCCCC-ccHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccCCCcccccCCCCCCchHH
Q 000475 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 660 ------~~ayv~Q~~~i~~-~Ti~eNI~~g~~---~~----~~~y~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 725 (1470)
.++|++|++.++. .|++||+.++.. .+ +++.++.++..++.+.. .....+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA-----------DAFPEQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHH
Confidence 3699999998875 699999987532 11 23344455555554322 24456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCE
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1470)
Q Consensus 726 kqRv~LARAl~~~~~i~lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 796 (1470)
|||++||||++.+|+++||||||++||+.+...+.+. ++.+. +++|+|++||+++++.. ||+|++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL-LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999998887664 44443 48999999999999876 99999999984
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1470 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 9e-45 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-09 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 7e-36 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-30 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-29 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-29 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-06 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-28 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-28 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-28 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-27 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-27 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-27 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-27 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-27 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-26 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-26 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-25 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-25 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-25 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-24 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-24 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-24 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-24 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-24 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-24 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-24 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-24 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-24 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-23 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-23 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-22 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-22 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-21 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-15 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-14 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-07 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-05 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-05 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 436 bits (1123), Expect = e-141
Identities = 91/251 (36%), Positives = 143/251 (56%), Gaps = 1/251 (0%)
Query: 1205 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1264
+ + WPS G++ +++L +Y +L+ I+ + +++G++GRTGSGKSTL+
Sbjct: 5 NSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Query: 1265 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1324
A R++ G I IDGV I L+ R +IPQ +F GT R NLDP HSDQ
Sbjct: 65 SAFLRLLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 1325 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEAT 1384
EIW+V ++ L ++ Q LD + + G S G +QL+CLAR +L K +IL+LDE +
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183
Query: 1385 ASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLED 1444
A +D T +I++T+++ + CTVI RI +++ D LV++E KV +YDS +L
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243
Query: 1445 NSSSFSKLVAE 1455
+ F
Sbjct: 244 PADRFVAGFIG 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 23/255 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIKVHG------KKAYVPQ 666
I G +V + G GSGKS+LLS+ L GEI +I G + +PQ
Sbjct: 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI-QIDGVSWDSITLEQWRKAFGVIPQ 101
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLS 722
+I +GT R+N+ D + ++ V + L IE + V+ + G LS
Sbjct: 102 KVFIFSGTFRKNL----DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
G KQ + LAR+V S + + + D+P + +D T + ++ L + TV+ ++E
Sbjct: 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCEARIEA 216
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPC 842
+ D LV+++ K+ Q +L V K + + + +V
Sbjct: 217 MLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM-NFLPVKVTATAIDQVQV 275
Query: 843 QMSQITEERFARPIS 857
++ ++ P+
Sbjct: 276 ELPMPNRQQVWLPVE 290
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 365 bits (939), Expect = e-116
Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 7/289 (2%)
Query: 557 AQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
+ T+V + + F +E + + ++ ++ P +K +
Sbjct: 1 STTEVVMENVTAFWEEGFGELF-EKAKQNNNNRKTSNGDDSLSFS-NFSLLGTPVLKDIN 58
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
KI +G +AV GS G+GK+SLL I+GE+ G IK G+ ++ Q+SWI GTI+
Sbjct: 59 -FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQNSWIMPGTIK 116
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
ENI+ G + Y V++ C L +DI +A+ D V+GE GI LSGGQ+ RI LARAVY
Sbjct: 117 ENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 175
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796
++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++ +G
Sbjct: 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235
Query: 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMS 845
G + +L + ++ S DQ + + + L+ + S
Sbjct: 236 SYFYGTFSELQN-LRPDFSSKLMGC-DSFDQFSAERRNSILTETLHRFS 282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 40/296 (13%)
Query: 1185 MISVERILQF--TNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITC 1242
+ +E + F +N+ + N + P L K I
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL----KDINF 59
Query: 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1302
+ + V G TG+GK++L+ + +EPS G+I G R+S Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 1303 DPMLFQGTVRTNLDPLEQHSDQEI-WEVINKCHLAEIVRQDQRLLDA----PVAEDGENW 1357
+ + GT++ N+ + D+ VI C L +D + E G
Sbjct: 107 NSWIMPGTIKENI--IGVSYDEYRYRSVIKACQL----EEDISKFAEKDNIVLGEGGITL 160
Query: 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTAT-----DNVIQQTIREETSRCTVITVA 1412
S GQR + LAR + K + +LD +D T ++ + + + + T I V
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK----TRILVT 216
Query: 1413 HRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRD 1468
++ + D +L+L EG Y + +L FS + S R+
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQFSAERRN 271
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 357 bits (919), Expect = e-114
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 9/242 (3%)
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649
+I + + W + PT+ I +G+ VAV G VG GKSSLLS++L E+ +
Sbjct: 3 SITVRNATFTWARSD----PPTLNGIT-FSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57
Query: 650 ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
+ G + + G AYVPQ +WIQ ++RENILFG + + +Y V++ CAL D+E+ G
Sbjct: 58 VEGH-VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSG 116
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGL 767
D + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+ + G+
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQ 827
L KT + TH + +L D+++VM GKI + G Y++L+A ++ ++ +
Sbjct: 177 LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYASHHHH 235
Query: 828 VN 829
+
Sbjct: 236 HH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 35/259 (13%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
I + N + + P L GIT + P + VVG+ G GKS+L+ AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCH 1334
+ I G ++ +PQ + ++R N+ LE+ VI C
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEE---PYYRSVIQACA 105
Query: 1335 LAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
L D +L + + E G N S GQ+Q V LAR + I + D+ +++D
Sbjct: 106 L----LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161
Query: 1391 T-----DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
+NVI + T I V H + + D+++V+ GK+ E S ++LL +
Sbjct: 162 VGKHIFENVIGP--KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD 219
Query: 1446 SSSFSKLVAEFLRRTSKSN 1464
+F++ + + +
Sbjct: 220 -GAFAEFLRTYASHHHHHH 237
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 354 bits (912), Expect = e-113
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 7/234 (2%)
Query: 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646
+ + +E W+ P +K + KI +G +AV GS G+GK+SLL I+GE
Sbjct: 3 TTTEVVMENVTAFWEEGGT----PVLKDIN-FKIERGQLLAVAGSTGAGKTSLLMMIMGE 57
Query: 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706
+ G IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +
Sbjct: 58 LEPSEGK-IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
A+ D V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
L++ KT + T ++E L AD +L++ +G G + +L + ++
Sbjct: 177 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 36/251 (14%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
++ ++ +EN+ + VLK I + + V G TG+GK++L+ + +EPS
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINK 1332
G+I G R+S Q + GT++ N+ ++ VI
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDE---YRYRSVIKA 106
Query: 1333 CHLAEIVRQDQRLLDA----PVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
C L +D + E G S GQR + LAR + K + +LD +D
Sbjct: 107 CQL----EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
Query: 1389 TAT-----DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1443
T ++ + + + + T I V ++ + D +L+L EG Y + +L
Sbjct: 163 VLTEKEIFESCVCKLMANK----TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218
Query: 1444 DNSSSFSKLVA 1454
SKL+
Sbjct: 219 LQPDFSSKLMG 229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 346 bits (889), Expect = 6e-99
Identities = 236/1196 (19%), Positives = 448/1196 (37%), Gaps = 140/1196 (11%)
Query: 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDV--------ERIGDFF 389
W A R ++R I + + F G + + DV ++IG FF
Sbjct: 132 WCLAAGRQIHKIRQKFFHAIMNQEIG-WFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF 190
Query: 390 LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA 449
+ F +I + G L + + +S A F + A
Sbjct: 191 QAM-------ATFFGGFIIGFT-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 450 KDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWAS 508
E L ++R + +++ L++ L E +R +KK + ++ F
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAF-LL 301
Query: 509 PTLVSVITF--GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRI 566
+ F G +++ + G VL+ + I + I A + + Y +
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV 361
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK---KPTIKLTDK--MKIM 621
+ I ++ K ++ ++E + +F + +++ +K+
Sbjct: 362 FKIIDNKPSIDSFSKSGHKPDNIQGNLEF-------KNIHFSYPSRKEVQILKGLNLKVK 414
Query: 622 KGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQSS 668
G VA+ G+ G GKS+ + + G + I G I+ + V Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQ 725
+ TI ENI +G++ +E+ + N I ++VGERG LSGGQ
Sbjct: 474 VLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
KQRI +ARA+ N + + D+ SA+D + + + L +T + H+L +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMKAHRKSLDQVNPPQEDKCLSR--- 839
AD++ G I + G +++L+ ++ +LV Q + L +D+ +
Sbjct: 591 ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMS 650
Query: 840 VPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL- 898
S + R R CG + E S + L P ++
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVG 710
Query: 899 --CQVLFQALQMGSNYWIAWA--------TDEKRKVSREQLIGVFIFLSGGSSFFILGRA 948
C ++ LQ + + E ++ + +F+ L S +
Sbjct: 711 IFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQG 770
Query: 949 VLLATIAIKTAQRLFLNMITSVFRAPISFFDST--PSSRILNRCSTDQSTVDTDIPYRLA 1006
+RL + S+ R +S+FD + + R + D + V RLA
Sbjct: 771 FTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830
Query: 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTAREL 1066
+ + L + II+ WQ L L++L I + L ++
Sbjct: 831 VIFQNIANLGTGIIISLIYGWQ---LTLLLLAIVPIIAIAGVVEMKMLSGQA--LKDKKE 885
Query: 1067 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD---------------Y 1111
G +E+I T+ +E +F + +
Sbjct: 886 LEGSGK-------IATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITF 938
Query: 1112 SCVTFHNCGTMEWLCLR--INLLFN-----FAFFLVLIILVTLPRSAIDPSLAGLAATYG 1164
S + R L+ LV +V +
Sbjct: 939 SFTQAMMYFSY-AAAFRFGAYLVTQQLMTFENVLLVFSAIVF--------GAMAVGQVSS 989
Query: 1165 LNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS--GKIEL 1222
+ +A +S I++ E I + P+ G ++
Sbjct: 990 FAPDYAKA------------TVSASHIIRIIEKTPE----IDSYSTQGLKPNMLEGNVQF 1033
Query: 1223 ENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
++ Y PT P VL+G++ + + +VG +G GKST++Q L R +P G + +
Sbjct: 1034 SGVVFNY-PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAE 1337
DG +I + +Q LR++L I+ Q+P+LF ++ N+ D S +EI + ++ +
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
+ + V + G S GQ+Q + +AR L+++ IL+LDEAT+++DT ++ V+Q+
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 1398 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
+ + T I +AHR+ T+ + DL++V+ GKV E+ + +QLL + +V
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMV 1267
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-54
Identities = 110/547 (20%), Positives = 216/547 (39%), Gaps = 64/547 (11%)
Query: 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCST 992
+ + G + A + ++ ++ I +FD + R +
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 993 DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQ-------VFPLFLVILGISIWYQV 1045
D S ++ I ++ A+ I+ W+ + P+ + GI
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1046 VNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSH 1105
T + L AY A +A E +A T+ F + + L R +
Sbjct: 234 SFTDK---ELHAY--AKAGAVA--------------EEVLAAIRTVIAFGGQKKELERYN 274
Query: 1106 SLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT--------LPRSAIDPS-- 1155
+ +++ + + N+ AF L+ +
Sbjct: 275 NNLEEAKRLGI-------KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV 327
Query: 1156 ----LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1211
+ L + + N+ N + + + + I + S
Sbjct: 328 LTVFFSVLIGAFSVGQ------ASPNIEAFANARGAAYEVFKIIDNKPS----IDSFSKS 377
Query: 1212 PEWPSS--GKIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1267
P + G +E +N+ Y P+ +LKG+ + + +VG +G GKST +Q +
Sbjct: 378 GHKPDNIQGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 1268 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP-LEQHSDQEI 1326
R+ +P G + IDG DI I ++ LR + ++ Q+P+LF T+ N+ E + EI
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496
Query: 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATAS 1386
+ + + + + + + D V E G S GQ+Q + +AR L++ +IL+LDEAT++
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1387 IDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1446
+DT ++ V+Q + + T I +AHR+ TV + D++ D G ++E + +L+ +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK- 615
Query: 1447 SSFSKLV 1453
+ KLV
Sbjct: 616 GIYFKLV 622
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 9e-32
Identities = 117/603 (19%), Positives = 238/603 (39%), Gaps = 85/603 (14%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVS-FLSGKHDHSSYHYGLVLASVFLFAKTVES 332
W + A +N + + V F +G + + + +FL +
Sbjct: 704 WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763
Query: 333 LTQ--RQWYFG--ANRIGIRVRSALTVLIYKRSMAIKFAGP--SSGIIINMINVDVERIG 386
+T + + FG + R+R + + ++ ++ F P ++G + + D ++
Sbjct: 764 ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW-FDDPKNTTGALTTRLANDAAQVK 822
Query: 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAA-------LFSTIFVMVSNTPLANRQ 439
R+ ++ Q L G + L + + ++ + +
Sbjct: 823 G--ATGSRLAVI-FQNIANLGT-----GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM 874
Query: 440 E-RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYT 497
+ + K +E +++ R + L+ EQ+F + L+ R+++KK
Sbjct: 875 LSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934
Query: 498 -----------CSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVLSALA-TFRILQ 543
+ A F LV+ ++TF +L V SA+ +
Sbjct: 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL---------VFSAIVFGAMAVG 985
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR 603
+ P+ A+ VS I I++ + + K + + +++
Sbjct: 986 QVSSFAPD----YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQF-------S 1034
Query: 604 EENFKKPT----IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRIS 651
F PT L +++ KG +A+ GS G GKS+++ + G + +
Sbjct: 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLD 1093
Query: 652 GAAIK------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQD 702
G IK + + V Q + +I ENI +G + R YEE++ +Q
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
I+ D + VG++G LSGGQKQRI +ARA+ + + D+ SA+D + + ++
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMK 819
L +T + H+L + ADL++V+++GK+++ G ++ L+A + +V Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272
Query: 820 AHR 822
A R
Sbjct: 1273 AKR 1275
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 1e-70
Identities = 119/582 (20%), Positives = 239/582 (41%), Gaps = 35/582 (6%)
Query: 877 WTVYSAFITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLI 930
W + + +K L+ V + +L A + D+ + +
Sbjct: 10 WQTFRRLWPTIAPFKAGLI-VAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMP 68
Query: 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRC 990
V I L + ++ ++ K + + + P++FFD + +L+R
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 128
Query: 991 STDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTAR 1050
+ D V + L + ++ + I+M +WQ+ + +V+ I V + R
Sbjct: 129 TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 188
Query: 1051 CHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1110
R +++ + + + + G + F + R + +
Sbjct: 189 ------------FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNK 236
Query: 1111 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAG-LAATYGLNLNV 1169
I L+ + A L ++ S +D AG + + + +
Sbjct: 237 MRLQGMKMVSASSISDPIIQLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIAL 294
Query: 1170 LQAWVIWNLCNVENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1225
++ + +L NV + M + + + + E K+ ++G +E N+
Sbjct: 295 MRP--LKSLTNVNAQFQRGMAACQTLFAILDSEQE-----KDEGKRVIDRATGDLEFRNV 347
Query: 1226 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1285
Y L+ I P K + +VGR+GSGKST+ + R + G IL+DG D+
Sbjct: 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
Query: 1286 SMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1343
L LR++++++ Q+ LF TV N E++S ++I E + + + +
Sbjct: 408 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403
LD + E+G S GQRQ + +AR LL+ IL+LDEAT+++DT ++ IQ + E
Sbjct: 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 1404 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
T + +AHR+ T+ D ++V+++G ++E + +LL +
Sbjct: 528 KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 4e-38
Identities = 104/559 (18%), Positives = 224/559 (40%), Gaps = 39/559 (6%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L + +N + L+ + GK D S + ++ + + + S
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSY 83
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFL 390
+ + + +V + ++ M + F S+G +++ I D E++
Sbjct: 84 IS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 140
Query: 391 Y-IHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448
+ + + ++ Y + + L + + + + +++ R S M+
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIR---VVSKRFRSISKNMQ 197
Query: 449 AKDARIKA-TSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL--F 505
++ + LK + + + ++ K+ ++ R K + S +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
Query: 506 WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYR 565
AS L V+ + LT+G + ++ L P+ +L + + + +
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 566 IQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK 625
+ + + +K +A+ ++ + + RE P ++ + +KI G
Sbjct: 318 LFAILDSEQEKDEGKRVIDRATG-DLEFRNVTFTYPGRE----VPALRNIN-LKIPAGKT 371
Query: 626 VAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSWIQT 672
VA+ G GSGKS++ S I G I + G ++ + A V Q+ +
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQKQRI 729
T+ NI + + S E++ E + I +G +++GE G+ LSGGQ+QRI
Sbjct: 431 DTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ +S + I D+ SA+D + + L L +T L H+L ++ AD +
Sbjct: 490 AIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIEQADEI 548
Query: 790 LVMKDGKIEQSGKYEDLIA 808
+V++DG I + G + +L+A
Sbjct: 549 VVVEDGIIVERGTHSELLA 567
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 8e-70
Identities = 115/582 (19%), Positives = 237/582 (40%), Gaps = 35/582 (6%)
Query: 877 WTVYSAFITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLI 930
W + T + YK LV + V+ A + DE L
Sbjct: 10 WQTFKRLWTYIRLYKAGLVVSTI-ALVINAAADTYMISLLKPLLDEGFGNAESNFLRILP 68
Query: 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRC 990
+ + L + L+ ++ ++ + P+ FFD + +L+R
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 991 STDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTAR 1050
+ D V L + ++ ++ LM +WQ+ + +V+ + +
Sbjct: 129 TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAF-------- 180
Query: 1051 CHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1110
++ R+++R + T + + + G + + + R + +
Sbjct: 181 ----AISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNS 236
Query: 1111 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAG-LAATYGLNLNV 1169
T I ++ + A L ++ + S G + +
Sbjct: 237 MRQQTMKLVSAQSIADPVIQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGL 294
Query: 1170 LQAWVIWNLCNVENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1225
++ + L +V ++ M + + + ++ +E N + E +G+++++++
Sbjct: 295 MRP--LKALTSVTSEFQRGMAACQTLFGLMDLETE----RDNGKYEAE-RVNGEVDVKDV 347
Query: 1226 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1285
Y L ++ + P K + +VGR+GSGKST+ R + G I +DG D+
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407
Query: 1286 SMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEVINKCHLAEIVRQDQ 1343
L +LR +++ Q+ LF T+ N +++ ++I + + H E +
Sbjct: 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467
Query: 1344 RLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET 1403
+ LD + E+G + S GQRQ V +AR LL+ +L+LDEAT+++DT ++ IQ + E
Sbjct: 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527
Query: 1404 SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
TV+ +AHR+ T+ D +LV+DEG+++E LL +
Sbjct: 528 KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 5e-39
Identities = 108/563 (19%), Positives = 222/563 (39%), Gaps = 47/563 (8%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L ++ +N A L+ + G + + + +F + +
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGF 83
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFL 390
Y + + V + ++ M + F S+G +++ I D E++
Sbjct: 84 ASS--YC-LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATS 140
Query: 391 Y-IHRIWLLPVQ-VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448
+ I + L ++ + + + + + +S +++ R S M+
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAIS---FVSKRFRKISRNMQ 197
Query: 449 AKDARIKAT-SETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAF---L 504
+ ++ + LK +V+ ++ K+ ++ R K L + +IA
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK-LVSAQSIADPVIQ 256
Query: 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
AS L +V+ ++ LT G + L P+ L + S + +
Sbjct: 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
Query: 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGS 624
+ + + ++ + + +D++ + + +E KP + I +G
Sbjct: 317 TLFGLMDLETERDNGKYEAERVNG-EVDVKDVTFTYQGKE----KPALSHVS-FSIPQGK 370
Query: 625 KVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK-------------AYVPQSS 668
VA+ G GSGKS++ + L R + +I + G A V Q+
Sbjct: 371 TVALVGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQ 725
+ TI NI + + + E++ + + IE G +V+GE G +LSGGQ
Sbjct: 427 HLFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
+QR+ +ARA+ ++ V I D+ SA+D + + L L KTVL H+L ++
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
Query: 786 ADLVLVMKDGKIEQSGKYEDLIA 808
AD +LV+ +G+I + G++ DL+A
Sbjct: 545 ADEILVVDEGEIIERGRHADLLA 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 4e-67
Identities = 121/591 (20%), Positives = 240/591 (40%), Gaps = 69/591 (11%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLIGVFIFLSGGSSFF 943
YK + ++ ++ + M I +A D + E++ + I + F
Sbjct: 12 YKYRIF-ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIF 70
Query: 944 ILGRAVLLAT---IAIKTAQRLFLNMITSVF----RAPISFFDSTPSSRILNRCSTDQST 996
++ R + +A T+ ++ ++ ++ F+ + ++++R D
Sbjct: 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ 130
Query: 997 VDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQ 1056
I L + I ++ + +M ++ L I I V R L+
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR----LR 186
Query: 1057 AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTF 1116
++ LA + G E + G + ++ F E+ ++
Sbjct: 187 KLTRERSQALAEVQG--------FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRAL 238
Query: 1117 HNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWV- 1174
+ + IN + + +V+ + A G + + L A+V
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIG-------------VGAYLAISGSITVGTLAAFVG 285
Query: 1175 --------IWNLCNVENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIE 1221
+ L S++R+ Q + + IKN + G+I+
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD----IKNGVGAQPIEIKQGRID 341
Query: 1222 LENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
++++ QYN +LK I + GE + VG +G GKSTLI + R + + G+ILI
Sbjct: 342 IDHVSFQYNDNEAPILKDINLSIEKGET-VAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 1281 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN-----LDPLEQHSDQEIWEVINKCHL 1335
DG +I LR+++ ++ QD +LF TV+ N +D+E+ E +
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAAKMANA 456
Query: 1336 AE-IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
+ I+ Q D V E G S GQ+Q + +AR+ L IL+LDEAT+++D ++++
Sbjct: 457 HDFIMNLPQG-YDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 1395 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
IQ+ + + T + VAHR+ T+ D ++V++ G ++E + R+L+
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 9e-37
Identities = 125/582 (21%), Positives = 232/582 (39%), Gaps = 77/582 (13%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD----HSSYHYGLVLASVFLFAKT 329
+ + + P LI + + H +H + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 330 VESLTQR-QWYFGANRIGIRVRSALTVLIYKR--SMAIK-FAGPSSGIIINMINVDVERI 385
V + + Y ++ + +Y +++ + +A G +I+ + DVE+
Sbjct: 73 VRPPIEFIRQYLA-QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 386 GDFFLY-IHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFH 443
DF L + IWL + + +AL I + ++ A + + + R
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLT---LAALFIFPFYILTVYVFFGRLRKL 188
Query: 444 SMIMEAKDARIKAT-SETLKSMRVLKLLSWE----QEFLKKLLRLREIERDSLKKYLYTC 498
+ A ++ E ++ + V+K + E + F KK + Y+
Sbjct: 189 TRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSF 248
Query: 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQ 558
+AI + + VI G + + +T G + + + +L P+ L + + Q
Sbjct: 249 AAINTV--TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 559 TKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE---------YAWDAREENFKK 609
+ S+ R+ + I ED + + I+I+ G Y + +
Sbjct: 307 SFASMDRVFQLIDED------YDIKNGVGAQPIEIKQGRIDIDHVSFQY------NDNEA 354
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK----- 661
P +K + + I KG VA G G GKS+L++ L IPR ++ I + G
Sbjct: 355 PILKDIN-LSIEKGETVAFVGMSGGGKSTLIN--L--IPRFYDVTSGQILIDGHNIKDFL 409
Query: 662 --------AYVPQSSWIQTGTIRENILFGK----DMRQSFYEEVLEGC-ALNQD--IEMW 706
V Q + + + T++ENIL G+ D EEV+E N I
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD------EEVVEAAKMANAHDFIMNL 463
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
G + VGERG+ LSGGQKQR+ +AR +N + I D+ SA+D + + ++ L
Sbjct: 464 PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQEALDV 522
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L +T L H+L + AD ++V+++G I ++G + +LIA
Sbjct: 523 LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 2e-66
Identities = 142/606 (23%), Positives = 263/606 (43%), Gaps = 81/606 (13%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE---KRKVSR-EQLIGVFIFLSGGSSFF 943
+ L+ V + + L + S Y I D R+ + + + + +S
Sbjct: 35 HTFTLIMVFVFV-TVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLL 93
Query: 944 ILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY 1003
+ ++ T++ RL + + R P+ FFD TP I++R D ++ +
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGN 153
Query: 1004 RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTA 1063
+ ++ L +I+M + + + L I+ +++ + +++ + Y+
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQT----RKYFYENQ 209
Query: 1064 RELARMVGTRKAPILHHFSESIAGATTIRCFNQEN----RFLLRSHSLIDDYSCVTFHNC 1119
R L ++ G E I+G T I+ F +E +F + SL + +
Sbjct: 210 RVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS- 260
Query: 1120 GTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWV---- 1174
G + L +N++ N F L+ G A + + + ++
Sbjct: 261 GVLPPL---MNMVNNLGFALISGF-------------GGWLALKDIITVGTIATFIGYSR 304
Query: 1175 -----IWNLCNVENKMIS----VERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1225
+ L N N + ERI + ++ E + G+IE +N+
Sbjct: 305 QFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELREVRGEIEFKNV 360
Query: 1226 LVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1284
Y+ P VLK IT PG+K + +VG TGSGK+T++ L R + G+IL+DG+D
Sbjct: 361 WFSYDKKKP-VLKDITFHIKPGQK-VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 1285 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTN-----LDPLEQHSDQEIWEVINKCHLAEIV 1339
I I LRS + I+ QD +LF TV+ N +D+EI E H +
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA----TDEEIKEAAKLTHSDHFI 474
Query: 1340 RQDQRL---LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQ 1396
+ L + + ++GE+ S GQRQL+ + R L +IL+LDEAT+++DT T+ IQ
Sbjct: 475 K---HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531
Query: 1397 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN-------SSSF 1449
+ + T I +AHR+ T+ + DL++VL +G+++E +L++ +S +
Sbjct: 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQY 591
Query: 1450 SKLVAE 1455
+V +
Sbjct: 592 GLVVEK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 9e-23
Identities = 122/569 (21%), Positives = 243/569 (42%), Gaps = 60/569 (10%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
+L + F V++I + P+LI + + +++ ++
Sbjct: 36 TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFW 95
Query: 334 TQRQWYFG-ANRIGIRVRSALTVLIYKRSMAIKFAGPSSG-IIINMINVDVERIGDFFL- 390
Q + + + R+R L + + + F G II +IN DV+ I +
Sbjct: 96 LQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF-FDRTPHGDIISRVIN-DVDNINNVLGN 153
Query: 391 YIHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANR-QERFHSMIME 448
I + + V + A+++ N+ + L ++ ++++ ++ F+ +
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILS--LVTLSIVPLTVLITQIVSSQTRKYFYEN--Q 209
Query: 449 AKDARIKA-TSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507
++ E + + V+KL + E++ ++K R+ E SL+K + +
Sbjct: 210 RVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNE----SLRKVGTKAQIFSGVLPP 265
Query: 508 SPTLVSVITF-GVCIL-----LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561
+V+ + F + LK +T G + + + R P+ L +MI
Sbjct: 266 LMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALA 325
Query: 562 SLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKI 620
S RI E + + +K + I+ + +++D KKP +K D I
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK-----KKPVLK--DITFHI 378
Query: 621 MKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQS 667
G KVA+ G GSGK+++++ ++ G+I + G I+ + V Q
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 668 SWIQTGTIRENILFGK----DMRQSFYEEVLEGC-ALNQD--IEMWADGDLSVVGERGIN 720
+ + + T++EN+ +G D EE+ E + D I+ +G +V+ + G +
Sbjct: 438 TILFSTTVKENLKYGNPGATD------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQ 779
LS GQ+Q + + RA +N + I D+ S VD T T Q M L+ KT + H+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD--TKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + ADL++V++DG+I + GK+++LI
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 7e-59
Identities = 78/265 (29%), Positives = 133/265 (50%), Gaps = 11/265 (4%)
Query: 1185 MISVERILQFTNIPSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCT 1243
I +E + +E +K+ + G+IE EN+ Y L+ ++ T
Sbjct: 22 FIDMENMFDLLKEETE----VKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFT 76
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
+ + +VG +G+GKST+++ LFR + S G I IDG DIS + LRS + ++PQD
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 1304 PMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360
+LF T+ N+ + E+ + + + V E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1420
++Q V +AR +LK I++LDEAT+++DT+ + IQ ++ + + T I VAHR+ TV++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 1421 NDLVLVLDEGKVLEYDSPRQLLEDN 1445
D +LV+ +G ++E LL
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRG 279
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-32
Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 33/287 (11%)
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
++ L+ + + + + + +KE+ TE + + G ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEE------TEVKDLPGAGPLRFQKGRIEFE 57
Query: 602 AREENF----KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRI 650
+F + T++ +M G +A+ G G+GKS++L + G I RI
Sbjct: 58 --NVHFSYADGRETLQDVS-FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RI 113
Query: 651 SGAAIK------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQ 701
G I + VPQ + + TI +NI +G+ + +EV ++
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHD 171
Query: 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
I + +G + VGERG+ LSGG+KQR+ +AR + + + D+ SA+D +
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQ 230
Query: 762 QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + + +T + H+L + AD +LV+KDG I + G++E L++
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 2e-58
Identities = 77/240 (32%), Positives = 131/240 (54%), Gaps = 7/240 (2%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAE 1337
+LIDG D+++ LR ++ ++ QD +L ++ N+ E +VI LA
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE--KVIYAAKLAG 123
Query: 1338 ----IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
I + + V E G S GQRQ + +AR L+ +IL+ DEAT+++D +++
Sbjct: 124 AHDFISELREG-YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
VI + + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 6e-31
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 25/220 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I +G + + G GSGKS+L I G++ I G + + + V
Sbjct: 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPNWLRRQVGVV 88
Query: 665 PQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGIN 720
Q + + +I +NI M E+V+ L I +G ++VGE+G
Sbjct: 89 LQDNVLLNRSIIDNISLANPGMSV---EKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + + +TV+ H+L
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES-EHVIMRNMHKICKGRTVIIIAHRL 204
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQN---SELVRQ 817
+ AD ++VM+ GKI + GK+++L+++ S L +
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 5e-57
Identities = 85/266 (31%), Positives = 143/266 (53%), Gaps = 10/266 (3%)
Query: 1185 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1244
S +R+L+ + +E P + + G + EN+ +Y VL G+ +
Sbjct: 310 SASAKRVLE---VLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSV 366
Query: 1245 -PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
PG + V+G TGSGKSTL+ + R+++P GR+ +D +D+ + L+DLR +S +PQ+
Sbjct: 367 KPGSL-VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 1304 PMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVG 1360
+LF GT++ NL +D EI E + + + D+ V G N+S G
Sbjct: 426 TVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483
Query: 1361 QRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1420
Q+Q + +AR L+KK ++L+LD+ T+S+D T+ I ++ T CT + +IPT +
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
Query: 1421 NDLVLVLDEGKVLEYDSPRQLLEDNS 1446
D +LVL EGKV + + ++LLE
Sbjct: 544 ADKILVLHEGKVAGFGTHKELLEHCK 569
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-35
Identities = 122/583 (20%), Positives = 229/583 (39%), Gaps = 84/583 (14%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS-YHYGLVLASVFLFAKTVES 332
W L F V I P L+ V + D S G+++ V L
Sbjct: 22 WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGI 81
Query: 333 LTQRQWYFGAN---RIGIRVRSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVER 384
F + G +R L +++ ++ + SS +I + N DV +
Sbjct: 82 GCT---VFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSS-LITRLTN-DVTQ 132
Query: 385 IGDFFLYIHRIWLL-PVQVFLALV-ILYKNLGAAPAFAA-----LFSTIFVMVSNTPLAN 437
+ + + + RI + P+ +V + N+ + + +++ PL
Sbjct: 133 LQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFR 192
Query: 438 R-QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
+ QE D + E L +RV++ E+ + R+ + +
Sbjct: 193 KIQEST--------DEVNRVVRENLLGVRVVRAFRREEYENE---NFRKANESLRRSIIS 241
Query: 497 TCSAIAFL-----FWASPTLVSVITFGVCILLKTPLTSGAVLSALA-TFRILQEPIYNLP 550
S I F F + +++V+ FG ++ + G++++ +I+ + +
Sbjct: 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IG 300
Query: 551 ELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK-- 608
+++ I + S R+ E + +P + +D A+ + E + F+
Sbjct: 301 NILNFIVRASASAKRVLEVLN--------EKPAIEEADNALALPNVEGSVSFENVEFRYF 352
Query: 609 ---KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK- 661
P + + + GS VAV G GSGKS+L++ L IPR ++V
Sbjct: 353 ENTDPVLSGVN-FSVKPGSLVAVLGETGSGKSTLMN--L--IPRLIDPERGRVEVDELDV 407
Query: 662 ------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMW 706
+ VPQ + + +GTI+EN+ +G++ + +E++E + Q I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISL 465
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G S V G N SGGQKQR+ +ARA+ V I DD S+VD T + L
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKR 524
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809
T T ++ AD +LV+ +GK+ G +++L+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 3e-56
Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 3/228 (1%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ ++ Y+ + +L+ I+ I G +G GKST+ L R +P+ G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINKCHLAE 1337
IDG I I L++ RS++ + QD + GT+R NL ++D+++W+V++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
V L+ V E G S GQRQ + +AR L+ +IL+LDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1398 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
+ T + +AHR+ T++D D + +++G++ +L+ +
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVP 665
+ S +A G G GKS++ S + GEI I G I + +V
Sbjct: 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENWRSQIGFVS 82
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLS 722
Q S I GTIREN+ +G + + E++ + L +E D + VGERG+ +S
Sbjct: 83 QDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QR+ +ARA N + + D+ +++D+ + + ++ L L+ +T L H+L
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDSLMKGRTTLVIAHRLST 200
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIA 808
+ AD + ++ G+I SGK+ +L+A
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 2e-52
Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 9/233 (3%)
Query: 1218 GKIELENLLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
IE ++ Y LK I P +VG TGSGKST+ + L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINK 1332
I I G +++ +RS + I+PQD +LF T++ N+ +D+E+ +
Sbjct: 75 -DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKS 131
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
L + + + D V G S G+RQ + +AR LLK +I++ DEAT+S+D+ T+
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1393 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDN 1445
+ Q+ + + T+I +AHR+ T+ + +++L++GK++E + + LL+ N
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 6e-32
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 19/205 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIK------VHGKKAYVPQ 666
I G+ A+ G GSGKS++ + G+I +I G + + VPQ
Sbjct: 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI-KIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLSG 723
+ + TI+ NIL+GK + EEV++ L IE ++VG +G+ LSG
Sbjct: 101 DTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
G++QRI +AR + + + IFD+ S++D+ T +LF++ + L +T++ H+L +
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTI 217
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIA 808
+A+ ++++ GKI + G ++DL+
Sbjct: 218 SSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-49
Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 1217 SGKIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1274
G ++ +++ Y P P VL+G+T T K +VG GSGKST+ L + +P+
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINK 1332
GG++L+DG + L ++++ + Q+P+LF + R N+ + +EI V +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
+ + + D V E G S GQRQ V LAR L++K R+L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1393 NVIQQ---TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449
+Q+ E SR TV+ + ++ +L L EG V E + QL+E +
Sbjct: 193 LRVQRLLYESPEWASR-TVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCY 250
Query: 1450 SKLV 1453
+V
Sbjct: 251 RSMV 254
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 24/231 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ G A+ G GSGKS++ + + G++ + G + +H + A V
Sbjct: 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAV 98
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINL 721
Q + + RENI +G + EE+ I + G + VGE G L
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQ 779
SGGQ+Q + LARA+ + I D+ SA+DA ++ L TVL T Q
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGN-QLRVQRLLYESPEWASRTVLLITQQ 216
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMKAHRKSLDQ 827
L + A +L +K+G + + G + L+ +V +
Sbjct: 217 LSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAPSDAAAHH 267
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 21/252 (8%)
Query: 1219 KIELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
+IE+ N+ ++ P+ L+ ++ + + V G TGSGKSTL+Q + ++EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLD----PLEQHSDQEIWEV 1329
G +L DG ++R + I Q P F V + + D++ +
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFD--EVAFAVKNFYPDRDPVPL 116
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+ K + + D S G+++ V +A V++ + IL+LDE +D
Sbjct: 117 VKKA-MEFVGLDFDSFKDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1390 ATDNVIQQTIRE-ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSS 1447
+ + + + +T TVI ++H I TVI++ D V+VL++GK + + + LE
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDP 231
Query: 1448 SFSKLVAEFLRR 1459
F +RR
Sbjct: 232 RFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G + V G+ GSGKS+LL + G I SG + G++ + IR
Sbjct: 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYE--------IRR 78
Query: 678 NI----------LFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGI----- 719
NI F + ++EV ++ ++D + VG
Sbjct: 79 NIGIAFQYPEDQFFA----ERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 720 ---NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----K 771
LSGG+K+R+ +A + D+ I D+P +D K L+ ++ + K
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG-----KTDLLRIVEKWKTLGK 189
Query: 772 TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
TV+ +H +E ++ D V+V++ GK G + + + + L
Sbjct: 190 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 244
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 26/239 (10%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+++E L Y+ LKGI + ++G G GKSTL Q +++PS GRIL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1280 IDGVDISM--IGLQDLRSRLSIIPQDP--MLFQGTVR-------TNLDPLEQHSDQEIWE 1328
D I G+ LR + I+ QDP LF +V N+ + + EI +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM----KLPEDEIRK 122
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
++ + + L D P S GQ++ V +A VL+ + ++L+LDE TA +D
Sbjct: 123 RVDNA--LKRTGIEH-LKDKPTHC----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1444
+ I + + E + T+I H I V D V V+ EG+V+ +P+++ +
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 7e-16
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 54/234 (23%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
M I +G A+ G G GKS+L + G + SG I K R+
Sbjct: 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKP----------IDYSRK 77
Query: 678 NILFGKDMRQS------------FYEEVLEGCA---LNQDI---EMW--ADGDLSVVG-- 715
I +R+S F V + + +N + E+ D L G
Sbjct: 78 GI---MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 716 ---ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ- 770
++ LS GQK+R+ +A + V I D+P + +D + +M LL +
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP-----MGVSEIMKLLVEM 189
Query: 771 -----KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
T++ TH ++ D V VMK+G++ G +++ A++ E++R++
Sbjct: 190 QKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EVIRKV 241
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 28/249 (11%)
Query: 1220 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
I+L+N+ + + L+ I GEK + ++G GSGK+TL++A+ ++ P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLD-PLEQH--SDQEIWEVINK 1332
I I+G+++ +R+ + P TV + E E++
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEML-- 112
Query: 1333 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
+ ++ + +L + + S GQ LV + L + I+ LDE ++D A
Sbjct: 113 ----KALKLGEEILRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 1393 NVIQQTIREETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLE-YDSPRQLLEDNSSSFS 1450
+VI + I+E I V H + + + G L+ S +LLE +
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGE 222
Query: 1451 KLVAEFLRR 1459
+ A +
Sbjct: 223 RNDALLVLD 231
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 26/211 (12%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAI-KVHGKKAYVPQ--SSWIQTG 673
G KV + G GSGK++LL +I G +P I+G + K+ Y ++
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGV 88
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQRIQLA 732
T+ + + ++++ + LE + E R + LS GQ ++ +
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR--------RKLYKLSAGQSVLVRTS 140
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAAD-L 788
A+ S ++ D+PF VDA + + + + K + TH +
Sbjct: 141 LALASQPEIVGLDEPFENVDAAR-----RHVISRYIKEYGKEGILVTHELDMLNLYKEYK 195
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819
+ +++ +L+ E R
Sbjct: 196 AYFLVGNRLQGPISVSELLESSIVEGERNDA 226
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 32/274 (11%)
Query: 1202 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1261
L + + + + + + VL F + + ++G G+GK+
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1262 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE 1319
TLI+ L ++P G+ + ++SM +++ LF +R +
Sbjct: 393 TLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIRG-----Q 441
Query: 1320 QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV 1379
+ Q +V+ + + ++D V S G+ Q V + L I +
Sbjct: 442 FLNPQFQTDVVKPLRIDD-------IIDQEVQH----LSGGELQRVAIVLALGIPADIYL 490
Query: 1380 LDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLD--EGKVL 1433
+DE +A +D+ + + IR ++ T V H + D V+V + K
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNA 549
Query: 1434 EYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNR 1467
+P LL + L F RR S R R
Sbjct: 550 HARAPESLLTGCNRFLKNLNVTF-RRDPNSFRPR 582
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-19
Identities = 43/255 (16%), Positives = 100/255 (39%), Gaps = 37/255 (14%)
Query: 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSG 635
+ D+ D + +++ + ++ + ++ + + + G G+G
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLN-VEEGEFSDSEILVMMGENGTG 390
Query: 636 KSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMR-----QSF 689
K++L+ + G + G + PQ + GT+R+ LF K +R F
Sbjct: 391 KTTLIKLLAGALKPDEGQ-DIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFLNPQF 447
Query: 690 YEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
+V++ ++ + ++ + +LSGG+ QR+ + A+ +D+Y+ D+P
Sbjct: 448 QTDVVKPLRIDD------------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 749 SAVDAHTGTHLFKQCLMGLL------SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-- 799
+ +D+ + ++ ++KT H AD V+V + +
Sbjct: 496 AYLDSEQ-----RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550
Query: 800 SGKYEDLIADQNSEL 814
+ E L+ N L
Sbjct: 551 ARAPESLLTGCNRFL 565
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 8e-18
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 34/221 (15%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHGKKA 662
+ + KL G + + G+ G GKS+ L + G+ R K
Sbjct: 87 YSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 663 Y-------------------VPQSSWIQT--GTIRENILFGKDMRQSFYEEVLEGCALNQ 701
+ + + ++ I+ + ++ + E+ E + +
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE--DVKR 204
Query: 702 DIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
I++ L V +R I LSGG+ QR + + +DVY+FD+P S +D +
Sbjct: 205 YIKIL---QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 761 KQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799
+ + LL+ K V+ H L LD +D V ++
Sbjct: 262 QI-IRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 37/244 (15%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI-----------LIDGVDISMIGLQDL 1293
PG+ +G+VG G GKST ++ L +P+ GR G ++ + L
Sbjct: 102 PGQV-LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 1294 RSRLSIIPQDPMLFQ------GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD 1347
+ I + + G V+ + L+ ++ +V + ++ + +L
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL----ENVLK 216
Query: 1348 APVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRC 1406
+ + S G+ Q + +++ + + DE ++ +D Q IR
Sbjct: 217 RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1407 TVITVAHRIPTVIDN--DLVLVLD-----EGKVLEYDSPRQLLEDNSSSFSKLVAEFLRR 1459
VI V H + +V+D D V ++ G V S R+ + N + AE LR
Sbjct: 273 YVICVEHDL-SVLDYLSDFVCIIYGVPSVYGVVTLPASVREGI--NIFLDGHIPAENLRF 329
Query: 1460 TSKS 1463
+++
Sbjct: 330 RTEA 333
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 7e-23
Identities = 48/260 (18%), Positives = 94/260 (36%), Gaps = 52/260 (20%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
I+L+ + +LK I+ G+K + G G+GK+TL+ L + G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDK-WILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1279 LIDGVDISMIG--LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-------------QHSD 1323
+ G +G + +R + + + ++ Q D
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 1324 QEIWEVINKC-------HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376
EI ++ A+ + L S G++Q V +AR L+ + +
Sbjct: 136 DEIRNEAHQLLKLVGMSAKAQ--QYIGYL------------STGEKQRVMIARALMGQPQ 181
Query: 1377 ILVLDEATASIDTATDNVIQQTIRE---ETSRCTVITVAHR---IPTVIDNDLVLVLDEG 1430
+L+LDE A +D + + +I V H I +L+L +G
Sbjct: 182 VLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSK--ILLLKDG 239
Query: 1431 KVLEYDSPRQLL-EDNSSSF 1449
+ ++ + +L +N S F
Sbjct: 240 QSIQQGAVEDILTSENMSRF 259
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------AY 663
+I KG K + G G+GK++LL+ + P SG + + GK +
Sbjct: 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT-VNLFGKMPGKVGYSAETVRQHIGF 101
Query: 664 VPQS---SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG----- 715
V S + + + + ++ G Y+++ + + A L +VG
Sbjct: 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD-----EIRNE-AHQLLKLVGMSAKA 155
Query: 716 ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
++ I LS G+KQR+ +ARA+ V I D+P + +D L L
Sbjct: 156 QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI-ARESLLSILDSLSDSYPTL 214
Query: 772 TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
++Y TH +E +L++KDG+ Q G ED++ +N
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 8e-23
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIR 676
+ KG +AV G G GKS+LL +LG I G I+V+ +VPQ S ++
Sbjct: 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK-IEVYQSIGFVPQFFSSPFAYSVL 84
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG-----ERGIN-LSGGQKQRIQ 730
+ +L G+ + + + D ++ A L + +R LSGGQ+Q I
Sbjct: 85 DIVLMGRSTHINTFAKPKS-----HDYQV-AMQALDYLNLTHLAKREFTSLSGGQRQLIL 138
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ---KTVLYTTHQLEF-LDAA 786
+ARA+ S + + D+P SA+D + L+ L+Q TV++TTHQ + A
Sbjct: 139 IARAIASECKLILLDEPTSALDLANQDIVLS--LLIDLAQSQNMTVVFTTHQPNQVVAIA 196
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPP 831
+ L++ + G+ +++ +N + + +
Sbjct: 197 NKTLLLNKQNFKF-GETRNILTSENLTALFHLPMFEQQAQYKESF 240
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 40/228 (17%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ +ENL Y + + + + V+G+ G GKSTL+ L + P G+I
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVR----------TNLDPLEQHSDQEI-W 1327
+ + +PQ F +V N + D ++
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1328 EVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASI 1387
+ ++ +L L S GQRQL+ +AR + + ++++LDE T+++
Sbjct: 111 QALDYLNLTH-------LAKREFTS----LSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 1388 DTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKV 1432
D A +++ + + ++ TV+ H+ V+ + L+L++
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 1e-21
Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
L ++ + + +VG G+GKSTL+ + + G I G + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1296 RLSIIPQDPML-FQGTVRTNLDPLEQ----HSDQEI-WEVINKCHLAEIVRQDQRLLDAP 1349
+ + Q F V L + E+ +V L + L
Sbjct: 74 HRAYLSQQQTPPFATPVW---HYLTLHQHDKTRTELLNDVAGALALDD-------KLGRS 123
Query: 1350 VAEDGENWSVGQRQLVCLARVLL-------KKKRILVLDEATASIDTATDNVIQQTIREE 1402
+ S G+ Q V LA V+L ++L+LDE S+D A + + + +
Sbjct: 124 TNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1403 TSR-CTVITVAHRIPTVIDNDL---------VLVLDEGKVLEYDSPRQLL 1442
+ + ++ +H DL +L GK+L ++L
Sbjct: 180 SQQGLAIVMSSH--------DLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 47/232 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKK------AYVPQSS 668
+ G + + G G+GKS+LL+ + G + +G ++ AY+ Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 669 WIQTG-TIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
+ + + R +V ++ + LSGG+
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----ALDDKLGRSTN-------QLSGGE 131
Query: 726 KQRIQLARA-------VYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQ-----KT 772
QR++LA + + D+P +++D A + L +LS
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ------QSALDKILSALSQQGLA 185
Query: 773 VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
++ ++H L A ++K GK+ SG+ E+++ N M R
Sbjct: 186 IVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRR 236
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 29/225 (12%)
Query: 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1275
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P
Sbjct: 7 HGSKLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63
Query: 1276 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQ-----HSDQEIWEV 1329
G I+ +GV I+ ++ ++ +P++ ++ + +V L + + EI +
Sbjct: 64 GEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA 118
Query: 1330 INKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDT 1389
+ + ++ ++ L S G + V LA LL I VLD+ +ID
Sbjct: 119 LESVEVLDLKKKLGEL------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 1390 ATDNVIQQTIREETS-RCTVITVAHRIPTVIDNDLVLVLDEGKVL 1433
+ + + ++I E + VI + + D L +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSYCDV--NENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 8e-17
Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------YVPQSSW 669
M I KG+ V G G GK++LL +I + + G I +G ++P+
Sbjct: 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPITKVKGKIFFLPEEII 88
Query: 670 I-QTGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ + ++ + + G + ++ + LE ++ + ++ LS
Sbjct: 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------------EVLDLKKKLGELSQ 136
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLE 781
G +R+QLA + N+++Y+ DDP A+D + + ++ +L +K ++ + +L
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK-VLKSILEILKEKGIVIISSREELS 195
Query: 782 FLDAADLVLVMKDGKIEQSGK 802
+ D+ + + K
Sbjct: 196 Y---CDVNENLHKYSTKIDKK 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 4e-21
Identities = 45/242 (18%), Positives = 94/242 (38%), Gaps = 34/242 (14%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
L + IG++G G GK+T + L + G + + +S
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-------- 334
Query: 1296 RLSIIPQDPMLFQGTVRTNLDPLEQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1351
+ I + GTV+ L+ + S EV + +L LL++ V
Sbjct: 335 KPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-------LLESNVN 384
Query: 1352 EDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVI 1409
+ S G+ Q + +A L K+ + VLD+ ++ +D ++ + I+ +
Sbjct: 385 D----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 1410 TVAHRIPTVIDN--DLVLVLDEGKVLEYDSPR--QLLEDNSSSFSKLVAEFLRRTSKSNR 1465
+ H + ++ D D ++V +G+ + L+ + F + + RR +++ R
Sbjct: 441 IIDHDL-SIHDYIADRIIVF-KGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGR 498
Query: 1466 NR 1467
R
Sbjct: 499 PR 500
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 9e-21
Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 33/273 (12%)
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPT---IKLTDKMKIMKG 623
+ ++ +N K E +V+ + + + K + D + +G
Sbjct: 235 KGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEG 294
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVPQSSWI-QTGTIREN--- 678
+ + G G GK++ ++GEI G+ + + +Y PQ + GT+++
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGS-VTPEKQILSYKPQRIFPNYDGTVQQYLEN 353
Query: 679 -ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVY 736
F+EEV + L++ +E + +LSGG+ Q++ +A +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLE------------SNVNDLSGGELQKLYIAATLA 401
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMK 793
+D+Y+ D P S +D + K + + + H L D AD ++V K
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAK-AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
G+ E++G +A L M + L+
Sbjct: 461 -GEPEKAG-----LATSPVTLKTGMNEFLRELE 487
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-16
Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ + V G G GK+++L + GEI + R
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEI--------IPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 680 L---FGKDM-------RQSFY----EEVLEGC---------ALNQDIEMWADGDLSVVGE 716
+ F + + Y + L+G + E+ +++ +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN 133
Query: 717 RGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
+ LSGG QR+ +A ++ +DVYIFD P S +D + + LL K V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE-RMNMAKAIRELLKNKYVIV 192
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQ 810
H L LD DL+ ++ + A
Sbjct: 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 41/212 (19%), Positives = 83/212 (39%), Gaps = 39/212 (18%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIPQD 1303
+GV+G+ G GK+T+++ L + P+ G + L+ R + ++
Sbjct: 24 NNTI-LGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 1304 PM------------------LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRL 1345
+GTV L +++ + EV ++ + +D +
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER--GKKDEVKELLNMTNLWNKDANI 138
Query: 1346 LDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR 1405
L S G Q + +A LL++ + + D+ ++ +D + + IRE
Sbjct: 139 L-----------SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
Query: 1406 CTVITVAHRIPTVIDN--DLVLVLDEGKVLEY 1435
VI V H + V+D DL+ ++ G+ Y
Sbjct: 188 KYVIVVDHDL-IVLDYLTDLIHII-YGESSVY 217
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 42/245 (17%)
Query: 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295
L+ + IG+VG G GK+T ++ L V EP+ G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 1296 RLSIIPQDPML---FQGTVR---TNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
++ + + ++GTV + +D + +S+ E++ + + L D
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID-------LYDRN 468
Query: 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCT 1407
V + S G+ Q V +A LL+ I +LDE +A +D + + IR E + T
Sbjct: 469 VED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 1408 VITVAHRIPTVIDN--DLVLVLDEGKVLEY---DSPRQLLEDNSSSFSKLVAEFLRRTSK 1462
+ V H + +ID D ++V EG+ + P + E + + + F RR
Sbjct: 525 ALVVEHDV-LMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITF-RRDPD 581
Query: 1463 SNRNR 1467
S R R
Sbjct: 582 SGRPR 586
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 48/246 (19%), Positives = 105/246 (42%), Gaps = 23/246 (9%)
Query: 567 QEFIKEDNQK-KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK 625
Q ++K++N + +P +K S+ + +++ ++ + +I KG
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLE-VEPGEIRKGEV 384
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENI---LF 681
+ + G G GK++ + + G G ++ AY PQ GT+ E +
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGK-VEWDLTVAYKPQYIKAEYEGTVYELLSKIDS 443
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
K + E+L+ + + V + LSGG+ QR+ +A + ++D+
Sbjct: 444 SKLNSNFYKTELLKPLGIIDLYD-------RNVED----LSGGELQRVAIAATLLRDADI 492
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798
Y+ D+P + +D + + + L+ + KT L H + +D +D ++V +G+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 799 QSGKYE 804
+ G+
Sbjct: 551 RHGRAL 556
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 40/249 (16%)
Query: 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR------ILIDGVDISMIGLQDLRSR-- 1296
G +G+VG G+GK+T ++ L + P+ +I + + R +
Sbjct: 116 DGMV-VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 1297 -LSIIPQDPM------LFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP 1349
+ + + +G VR L +++ E EV+ + L + +LD
Sbjct: 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE--EVVKELEL-------ENVLDRE 225
Query: 1350 VAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE-ETSRCTV 1408
+ S G+ Q V +A LL+K DE ++ +D + + IR V
Sbjct: 226 L----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 1409 ITVAHRIPTVIDN--DLVLVLD-----EGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTS 1461
+ V H + V+D D++ V+ G + R + + + L E +R
Sbjct: 282 LVVEHDL-AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY--LKDENVRFRP 338
Query: 1462 KSNRNRDLS 1470
R LS
Sbjct: 339 YEIRFTKLS 347
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-18
Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 53/228 (23%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------------------ 648
+ L + G V + G G+GK++ + + G++
Sbjct: 101 YGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
Query: 649 ---------RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LE 695
R+ I+ K YV G +RE +L D F E V LE
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE-LLKKVDEVGKFEEVVKELELE 219
Query: 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
L++++ LSGG+ QR+ +A A+ + Y FD+P S +D
Sbjct: 220 N-VLDRELH---------------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 756 GTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800
+ + ++ L+ K VL H L LD +D++ V+
Sbjct: 264 RLKVAR--VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 9e-20
Identities = 42/236 (17%), Positives = 105/236 (44%), Gaps = 32/236 (13%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCT-FPGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1277
+ +++L + +LKGI+ GE I G++G G+GK+T ++ + +++PS G
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD--------PLEQHSDQEIWE 1328
+ + G ++ ++R +S +P++ ++ L ++ +
Sbjct: 72 VTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS-SSEIEEMVER 129
Query: 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
L E + R+ +S G + + +AR L+ R+ +LDE T+ +D
Sbjct: 130 ATEIAGLGE--KIKDRV---------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 1389 TATDNVIQQTIREETSR-CTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQL 1441
+++ +++ + T++ +H + ++ D + ++ G ++E + +L
Sbjct: 179 VLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 633 GSGKSSLLSSILGEIP------RISGAAIKVHGKKA-----YVPQSSWIQTG-TIRENIL 680
G+GK++ L I I + G + + Y+P+ + E +
Sbjct: 51 GAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR 110
Query: 681 F-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
F + E E L + +R S G +++ +AR
Sbjct: 111 FVAGFYASSSSEIEEMVERATEIAGLGE----KIK-------DRVSTYSKGMVRKLLIAR 159
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLV 791
A+ N + I D+P S +D ++ L + T+L ++H + ++ D + +
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLN-AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIAL 218
Query: 792 MKDGKIEQSGKYEDLIADQNSELV 815
+ +G I ++G E+L ++ +
Sbjct: 219 IHNGTIVETGTVEELKERYKAQNI 242
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-19
Identities = 54/257 (21%), Positives = 101/257 (39%), Gaps = 44/257 (17%)
Query: 1200 EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1259
+ + E + L+ Y L+ + IG+VG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1260 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVR---T 1313
K+T ++ L V EP+ G+I D ++ + + ++GTV +
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKPQYIKADYEGTVYELLS 369
Query: 1314 NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373
+D + +S+ E++ + ++ ++ L S G+ Q V +A LL+
Sbjct: 370 KIDASKLNSNFYKTELLKPLGIIDLYDREVNEL-----------SGGELQRVAIAATLLR 418
Query: 1374 KKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN--DLVLVLDE 1429
I +LDE +A +D + + IR E + T + V H + +ID D ++V E
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVF-E 476
Query: 1430 GKVLEY---DSPRQLLE 1443
G+ +Y P + E
Sbjct: 477 GEPGKYGRALPPMGMRE 493
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-18
Identities = 47/244 (19%), Positives = 104/244 (42%), Gaps = 23/244 (9%)
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGE-YAWDAREENFKKPTIKLTDKMKIMKGSK 625
+ ++K++N + E + ++IE + +++ ++ + +I KG
Sbjct: 256 RGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLE-VEPGEIKKGEV 314
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENI---LF 681
+ + G G GK++ + + G G I+ AY PQ GT+ E +
Sbjct: 315 IGIVGPNGIGKTTFVKMLAGVEEPTEGK-IEWDLTVAYKPQYIKADYEGTVYELLSKIDA 373
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
K + E+L+ + + + LSGG+ QR+ +A + ++D+
Sbjct: 374 SKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDADI 422
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798
Y+ D+P + +D + + + L+ + KT L H + +D +D ++V +G+
Sbjct: 423 YLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPG 480
Query: 799 QSGK 802
+ G+
Sbjct: 481 KYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 46/238 (19%), Positives = 88/238 (36%), Gaps = 39/238 (16%)
Query: 1220 IELENLLV----QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS- 1274
+E L +Y VL + G +G+VG G+GKST ++ L + P+
Sbjct: 18 SHMEQLEEDCVHRYGVN-AFVLYRLPVVKEGMV-VGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1275 -----GGRILIDGVDISMIGLQDLRSR---LSIIPQDPM------LFQGTVRTNLDPLEQ 1320
+I + + + + + + + +G V L ++
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE 135
Query: 1321 HSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380
E EV+ L + +L+ + S G+ Q V +A LL+
Sbjct: 136 TGKLE--EVVKALEL-------ENVLEREIQH----LSGGELQRVAIAAALLRNATFYFF 182
Query: 1381 DEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVIDN--DLVLVLDEGKVLEY 1435
DE ++ +D + IR + +V+ V H + V+D D++ V+ G+ Y
Sbjct: 183 DEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVV-YGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 25/210 (11%)
Query: 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSW 669
L + +G V + G G+GKS+ + + G+ IP + G G +
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE- 93
Query: 670 IQTGTIRENILFGKDMRQSFYE---------------EVLEGCALNQDIEMWADG-DLSV 713
+Q + L ++R E+L+ +E +L
Sbjct: 94 LQNYFEK---LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN 150
Query: 714 VGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-K 771
V ER I +LSGG+ QR+ +A A+ N+ Y FD+P S +D + + + L + K
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA-ARAIRRLSEEGK 209
Query: 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800
+VL H L LD +D++ V+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 38/291 (13%)
Query: 1199 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRT 1256
+S + I+L N+ ++ + L ++ P + GV+G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 1257 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS-RLSIIPQDPMLFQG------ 1309
G+GKSTLI+ + + P+ G +L+DG +++ + +L R I M+FQ
Sbjct: 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI----GMIFQHFNLLSS 119
Query: 1310 -TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENW-----SVGQR 1362
TV N+ PLE ++ E+ R+ LL D + S GQ+
Sbjct: 120 RTVFGNVALPLE----------LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169
Query: 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID 1420
Q V +AR L ++L+ D+AT+++D AT I + +++ T++ + H + V+
Sbjct: 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVK 228
Query: 1421 N--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRDL 1469
D V V+ G+++E D+ ++ + ++ +F++ T + D
Sbjct: 229 RICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ---KFIQSTLHLDIPEDY 276
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL------MGLLSQKTV 773
NLSGGQKQR+ +ARA+ SN V + D SA+D T T + L +GL T+
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT-TRSILELLKDINRRLGL----TI 217
Query: 774 LYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
L TH+++ + D V V+ +G++ + ++ + + L ++
Sbjct: 218 LLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 263
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 626 VAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-----------AYVPQS------ 667
+ G G+GKS L I G P ++++G +VPQ
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 668 -SWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSG 723
++ NI +G R V E ++ + +R LSG
Sbjct: 85 L------SVYRNIAYGLRNVERVERDRRVREMAEKLG---------IAHLLDRKPARLSG 129
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----TVLYTTH- 778
G++QR+ LARA+ + + D+P SAVD T L ++ L + Q+ +L+ TH
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE-LRFV--QREFDVPILHVTHD 186
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+E AD V VM +G+I + GK ++L
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 1254 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVR 1312
G TG+GKS ++ + +V+P G + ++G DI+ L R + +PQD LF +V
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHLSVY 88
Query: 1313 TNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371
N+ L E + + +AE + L P S G+RQ V LAR L
Sbjct: 89 RNIAYGLRNVERVERDRRVRE--MAEKLGIAHLLDRKP-----ARLSGGERQRVALARAL 141
Query: 1372 LKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-------ND 1422
+ + R+L+LDE +++D T V+ + +R ++ V H D D
Sbjct: 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH------DLIEAAMLAD 195
Query: 1423 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
V V+ G+++E ++L + VAEFL
Sbjct: 196 EVAVMLNGRIVEKGKLKELFS-AKNGE---VAEFL 226
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 4e-14
Identities = 98/727 (13%), Positives = 195/727 (26%), Gaps = 233/727 (32%)
Query: 531 AVLSALATFRILQEP--IYNLPELISMIAQTKVSLYRIQEFIKEDNQK------KPI-TE 581
++LS I+ + L + + + Q+F++E + PI TE
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTE 101
Query: 582 PTSKASDVAIDIEAGEYAWDAREENFKK-------PTIKLTDKMKIMK-GSKVAVCGSVG 633
+ + IE + ++ + F K P +KL + ++ V + G +G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 634 SGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR--ENILFGKDMRQSFYE 691
SGK+ + + K+ W+ E +L +M Q
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF----------WLNLKNCNSPETVL---EMLQKLLY 207
Query: 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-----DVYIFDD 746
++ D + D S + I+ S + R L Y N +V +
Sbjct: 208 QI--------DPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQ---N 255
Query: 747 PFSAVDAHTGTHLFK-QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805
A +A F C +L TT F D + I
Sbjct: 256 A-KAWNA------FNLSC--------KILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297
Query: 806 LIADQNSELVRQ---MKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFS 862
L D+ L+ + + + L P + P ++S I E S +
Sbjct: 298 LTPDEVKSLLLKYLDCRP--QDL----PREVLTTN---PRRLSIIAE-------SIRDGL 341
Query: 863 GRSQD-EDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK 921
+ + ++ T+ + + L P + +F L
Sbjct: 342 ATWDNWKHVNCDKLT-TIIESSLN-----VLEPAEY--RKMFDRL--------------- 378
Query: 922 RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDST 981
+F A I ++ ++I S
Sbjct: 379 -----------SVFPPS-------------AHIPTILLSLIWFDVIKSD----------- 403
Query: 982 PSSRILNRCSTDQSTVDTDIP---YRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038
++N+ S V+ + + L
Sbjct: 404 -VMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKV------------------------ 437
Query: 1039 ISIWYQVVNTARCH-YLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1097
++ N H ++ Y I + F+ +
Sbjct: 438 -----KLENEYALHRSIVDHYNIP------------------------------KTFDSD 462
Query: 1098 NRFLLRSHSLIDDYSC--VTFH--NCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAID 1153
+ +D Y + H N E + L + +F F I + +A
Sbjct: 463 DLIPPY----LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 1154 PSLAGLA--ATYG----LNLNVLQAWV---IWNLCNVENKMISVE--RILQFTNIPSEAP 1202
L L Y N + V + L +E +I + +L+ + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 1203 LVIKNSR 1209
+ + +
Sbjct: 579 IFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-12
Identities = 112/706 (15%), Positives = 210/706 (29%), Gaps = 228/706 (32%)
Query: 185 DIPLLREED--DEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSE 242
DI + E+ D F CK++ + + K E+ HI +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDM------------------PKSILSKEEIDHIIMSKDAV 61
Query: 243 TANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIAS-YIGPFLIT-N 300
+ L L KQ+ +++ V + L +N F ++ I + P ++T
Sbjct: 62 SGTLR--LFWTLLSKQE-------EMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRM 111
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAK-TV---ESLTQ-RQWYFGANRIGIRVRSALTV 355
++ ++ + +FAK V + + RQ +R A V
Sbjct: 112 YIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALL-------ELRPAKNV 153
Query: 356 LIY------KRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL 409
LI K +A+ + V+ DF ++ WL
Sbjct: 154 LIDGVLGSGKTWVALDVCL----------SYKVQCKMDFKIF----WL------------ 187
Query: 410 YKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKD--ARIKATSETLKSMRVL 467
NL + + L + D + IK ++++ +
Sbjct: 188 --NLKNCNSPETVL---------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELR 235
Query: 468 KLLSWEQEFLKKLLRLREI-ERDSLKKYLYTC---------SAIAFLFWASPTLVSVITF 517
+LL + + LL L + + + +C FL A+ T +S+
Sbjct: 236 RLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-- 292
Query: 518 GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577
LT V S L + L +LP + ++S+ I E I++
Sbjct: 293 ----HHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSI--IAESIRDG---- 340
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI-KLTDKMKIMKGSKVAVCGSVGSGK 636
T WD N+K KLT ++
Sbjct: 341 LAT-------------------WD----NWKHVNCDKLTTIIE----------------- 360
Query: 637 SSL--LSSILGEIPRISGAAIKVHGKKAYV-----PQSSWIQTGTIRENILFGKDMRQSF 689
SSL L E +K + P S+ I T + ++++ D+ +S
Sbjct: 361 SSLNVLEP--AEY------------RKMFDRLSVFPPSAHIPTILL--SLIWF-DVIKSD 403
Query: 690 YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV---YSNSDVYIFDD 746
V+ +E + + L + L R++ Y+ + DD
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 747 PF-SAVD----AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+D +H G HL ++ +++ FL+ KI
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQ----------KIRHDS 511
Query: 802 -----------------KYEDLIADQNSELVRQMKAHRKSLDQVNP 830
Y+ I D + + R + A L ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 7e-12
Identities = 52/350 (14%), Positives = 111/350 (31%), Gaps = 105/350 (30%)
Query: 1138 FLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNVENK---MISVERILQ 1193
+ L++ + + L Y + + + E + M++ I Q
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYK--------F-LMSPIKTEQRQPSMMTRMYIEQ 115
Query: 1194 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1253
+ ++ + K + + ++L L++ P K + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELRP---------------AKNVLID 156
Query: 1254 GRTGSGKSTL-IQAL--FRVVEPSGGRIL------IDGVDISMIGLQDLRSRLSIIPQDP 1304
G GSGK+ + + ++V +I + + + LQ L ++ DP
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-----DP 211
Query: 1305 MLFQGTVRTNLDPLEQHSDQE------IWEVINKCHLAEIVR--QDQRLLDAPVAEDGEN 1356
+ ++ L HS Q + C L ++ Q+ + +A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNA-------- 261
Query: 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1416
+++ C +IL+ T V T+
Sbjct: 262 FNLS-----C---------KILLT--------TRFKQVTDFLSAATTTH----------I 289
Query: 1417 TVIDNDLVLVLDEG-----KVLE---YDSPRQLLEDNSSSFSKLVAEFLR 1458
++ + + L DE K L+ D PR++L N S ++AE +R
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIR 338
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-08
Identities = 108/727 (14%), Positives = 201/727 (27%), Gaps = 250/727 (34%)
Query: 815 VRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGR 874
+ + K + V ED + C+ + + + I S D
Sbjct: 11 TGEHQYQYKDILSVF---EDAFVDNFDCK--DVQD--MPKSI----LSKEEIDHIIMSKD 59
Query: 875 VKWTVYSAFITLVYKGALVPVILLCQVLFQ-ALQMGSNY-WI--AWATD----------- 919
F TL+ K + Q + L+ NY ++ T+
Sbjct: 60 AVSGTLRLFWTLLSKQEEM-----VQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMY 112
Query: 920 --------------EKRKVSREQLI------------GVFIFLSG--GSSFFILGRAVLL 951
K VSR Q + + G GS G+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----GKTWV- 166
Query: 952 ATIAIKTAQ--RLFLNMITSVFRAPISF-FDSTPSSRI---LNRCS------TDQSTVDT 999
A+ ++ M +F ++ ++P + + T +S +
Sbjct: 167 ---ALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1000 DIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QVVNT--ARCHYLLQ 1056
+I R+ + L +LL + + L++L ++ + N C LL
Sbjct: 222 NIKLRIHSIQAELRRLL---------KSKPYENCLLVLL-NVQNAKAWNAFNLSCKILL- 270
Query: 1057 AYYITTARELARMVG--TRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1114
T +++ + T L H S T E + LL
Sbjct: 271 ---TTRFKQVTDFLSAATTTHISLDHHSM---TLTP-----DEVKSLLLK---------- 309
Query: 1115 TFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA--IDP-SLAGLAATYGLNLNVLQ 1171
+L R LPR +P L+ +A + L
Sbjct: 310 ---------YLDCRPQ---------------DLPREVLTTNPRRLSIIAESIRDGLA--- 342
Query: 1172 AWVIWNLCNVENKMISVERILQ----------------F---TNIPSEAPLVIKNSRPSP 1212
W W N + +E L F +IP+ L +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLI------ 395
Query: 1213 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1272
W K ++ ++ + + K +L++ +
Sbjct: 396 -WFDVIKSDVMVVVNKLH-----------------------------KYSLVEK-----Q 420
Query: 1273 PSGGRILIDGVDISMIGLQDLRSRL--SIIPQD--PMLFQGTVRTNLDPLEQHSDQEIWE 1328
P I I + + + + L SI+ P F D + + DQ +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-----DLIPPYLDQYFYS 475
Query: 1329 VINKCHLAEI-----------VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377
I HL I V D R L+ + D W+ L L ++ K I
Sbjct: 476 HIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 1378 LVLDEA-TASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV-LVL-DEGKVLE 1434
D ++ D + + S+ T DL+ + L E + +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYT--------------DLLRIALMAEDEAIF 580
Query: 1435 YDSPRQL 1441
++ +Q+
Sbjct: 581 EEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 55/398 (13%), Positives = 101/398 (25%), Gaps = 143/398 (35%)
Query: 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYILMARRAAGLVIVLCNVLIFIL 66
L++ + KV +F W+ + + + M ++ L +
Sbjct: 168 LDVCLSYKVQC----KMDFKIF---WLNLKNCNSPETVLEMLQK-------LLYQID--- 210
Query: 67 YMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWP---LVL--VLW 121
W R ++ L + R L + K + LVL V
Sbjct: 211 -------PNWTSRSDHSSNIKLRIHSI--------QAELRRLLKSKPYENCLLVLLNV-Q 254
Query: 122 --WVVH--------LVI-----VLVCVSVYLLTHLSSIGLPHILPEAKAVDFVS------ 160
+ L+ V +S TH+S L + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 161 ---LPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCK-------NISTFASAGVL 210
LP V +P + ++ E + L N +
Sbjct: 315 PQDLPREV-----------LTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTI--- 358
Query: 211 SKITFHWLNQLFQRGRIQKLELL----HIPP---------IPQSETANDASSLLEESL-- 255
+ + + L R +L + HIP + +S+ + L + SL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 256 RKQKTDATSLPQVII------------HAV------------WKSLALNAAFAGVNTIAS 291
++ K S+P + + H L S
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYS 475
Query: 292 YIG---------------PFLITNFVSFLSGKHDHSSY 314
+IG + +F FL K H S
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDST 512
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 5e-14
Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS- 667
K + T +++ + + +CG G GKS+L+ +I ++ G + + YV
Sbjct: 448 KILLNKTQ-LRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHDI 504
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
++ + + + ++ L EM +S LSGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDKLIE--FGFTDEMI-AMPIS-------ALSGGWK 554
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA- 785
++ LARAV N+D+ + D+P + +D L L T + +H FLD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWL-VNYLNTC--GITSITISHDSVFLDNV 611
Query: 786 ADLVLVMKDGKIEQ-SGKYEDLIADQNSELVRQMKAHRKSLDQ 827
+ ++ + K+ + G + + + + KA+ + +
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFV-----KKCPAAKAYEELSNT 649
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-10
Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 42/241 (17%)
Query: 1235 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294
++L ++ G+ G G GKSTL++A+ G +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVY------- 499
Query: 1295 SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1354
+ D + LD + + + +K L E ++ P++
Sbjct: 500 -----VEHDIDGTHSD-TSVLDFVFESGVGTKEAIKDK--LIE-FGFTDEMIAMPISA-- 548
Query: 1355 ENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAH- 1413
S G + + LAR +L+ IL+LDE T +DT + + T T IT++H
Sbjct: 549 --LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHD 604
Query: 1414 -----RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRD 1468
+ I + + K+ +Y N + F K SN + +
Sbjct: 605 SVFLDNVCEYI-----INYEGLKLRKYKG-------NFTEFVKKCPAAKAYEELSNTDLE 652
Query: 1469 L 1469
Sbjct: 653 F 653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-06
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT-HLFKQCLMGLLS-----QKTV 773
LSGGQK ++ LA + + + D+P T +L + L L + V
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEP---------TNYLDRDSLGALSKALKEFEGGV 951
Query: 774 LYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
+ TH EF + V +KDG++ SG
Sbjct: 952 IIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 8e-06
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+++ N+ QY T + I +I V+G G+GKSTLI L + P+ G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 67/227 (29%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKA-----------YVP 665
+I +G V + G GSGK+++L I G E P + + + GK+ V
Sbjct: 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 666 QS-------SWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVV 714
Q+ T+ +N+ FG ++ +E V E + L
Sbjct: 94 QNYALFQHM------TVYDNVSFGLREKRVPKDEMDARVRELLRFMR---------LESY 138
Query: 715 GERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA-------------HTGTHLF 760
R + LSGGQ+QR+ LARA+ V +FD+PF+A+D H +
Sbjct: 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV- 197
Query: 761 KQCLMGLLSQKTVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T ++ TH Q E L+ AD VLV+ +G +EQ G E++
Sbjct: 198 -----------TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 60/265 (22%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE + Y ++G++ + +G++G +GSGK+T+++ + + P+ G +
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-------TVRTNLD-PLEQHSDQEIWEVIN 1331
I G ++ + Q R ++FQ TV N+ L
Sbjct: 74 IGGKRVTDLPPQK-R-------NVGLVFQNYALFQHMTVYDNVSFGLR----------EK 115
Query: 1332 KCHLAEIVRQDQRLLDAPVAEDG------ENWSVGQRQLVCLARVLLKKKRILVLDEATA 1385
+ E+ + + LL + + S GQ+Q V LAR L + ++L+ DE A
Sbjct: 116 RVPKDEMDARVRELLRF-MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 1386 SIDTATDNVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVLDEGKV 1432
A D I++ +R + T + V H D D VLVL EG V
Sbjct: 175 ----AIDTQIRRELRTFVRQVHDEMGVTSVFVTH------DQEEALEVADRVLVLHEGNV 224
Query: 1433 LEYDSPRQLLEDNSSSFSKLVAEFL 1457
++ +P ++ E + F VA F+
Sbjct: 225 EQFGTPEEVYEKPGTLF---VASFI 246
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 65/245 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVH-GKKAYVPQSSW 669
++ G +++ GS GSGKS+ L I G I ++G I + K + +
Sbjct: 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDKDGQLKVADK 85
Query: 670 IQTGTIRENI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVV 714
Q +R + +F Q F + VLE D A L+ V
Sbjct: 86 NQLRLLRTRLTMVF-----QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 715 G--ERG-----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--------------A 753
G ER ++LSGGQ+QR+ +ARA+ DV +FD+P SA+D A
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200
Query: 754 HTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNS 812
G T++ TH++ F + V+ + GKIE+ G E + + S
Sbjct: 201 EEGK--------------TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
Query: 813 ELVRQ 817
++Q
Sbjct: 247 PRLQQ 251
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 8e-11
Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 71/282 (25%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
K+ + +L +Y VLKG++ G+ I ++G +GSGKST ++ + + +PS G
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDV-ISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 1278 ILIDGVDISMIG-------------LQDLRSRLSIIPQDPMLFQG-------TVRTN--L 1315
I+++G +I+++ L+ LR+RL+ M+FQ TV N
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT------MVFQHFNLWSHMTVLENVME 116
Query: 1316 DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLD----APVAEDG--ENWSVGQRQLVCLAR 1369
P++ + + + + L A+ + S GQ+Q V +AR
Sbjct: 117 APIQ----------VLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166
Query: 1370 VLLKKKRILVLDEATASIDTATD--------NVIQQTIREETSRCTVITVAHRIP---TV 1418
L + +L+ DE T +A D ++QQ E T++ V H + V
Sbjct: 167 ALAMEPDVLLFDEPT----SALDPELVGEVLRIMQQLAEEGK---TMVVVTHEMGFARHV 219
Query: 1419 IDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1460
+ V+ L +GK+ E P Q+ + S + +FL+ +
Sbjct: 220 SSH--VIFLHQGKIEEEGDPEQVFGNPQSPRLQ---QFLKGS 256
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 35/206 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKK--------AYVP 665
+ G + + G+ G GK++LL + G E P +SG I Y+
Sbjct: 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86
Query: 666 QSSWIQTG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
Q G T+ NI +G + + + M +S + R
Sbjct: 87 QE-----GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE-----AMLELTGISELAGRYP 136
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYT 776
+ LSGGQ+QR LARA+ + ++ + D+PFSA+D + + ++ L K+ ++
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALRANGKSAVFV 195
Query: 777 TH-QLEFLDAADLVLVMKDGKIEQSG 801
+H + E L AD + VMK G+I Q+
Sbjct: 196 SHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 56/272 (20%), Positives = 104/272 (38%), Gaps = 71/272 (26%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+ + +L + T VL I+ + PGE + ++G +G GK+TL++ L +P G I
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEI-LFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDP------MLFQG-------TVRTNLD-PLEQHSDQ 1324
+ G I +P L Q TV N+ L
Sbjct: 62 SLSGKTIFSKNTN--------LP--VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG--- 108
Query: 1325 EIWEVINKCHLAEIVRQDQRLLD----APVAED------GENWSVGQRQLVCLARVLLKK 1374
K A+ ++ + +L+ + +A G GQ+Q LAR L
Sbjct: 109 -------KGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPD 156
Query: 1375 KRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVID-------NDLVL 1425
+++LDE +++D I++ + + + + V+H D D +
Sbjct: 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH------DREEALQYADRIA 210
Query: 1426 VLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
V+ +G++L+ SP +L + A F+
Sbjct: 211 VMKQGRILQTASPHELYRQPADLD---AALFI 239
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSG Q+QR+ LARA+ + + + D+PFS +DA + + + + T+
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE------VQSRLGVTL 194
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
L +H + AD V V+ GK+ Q GK EDL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 60/269 (22%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV----EPS 1274
+I ++N+ + + L + ++ G++G +G+GK+T + R++ PS
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM----RIIAGLDVPS 58
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQH-- 1321
G + D ++ G + P+D M+FQ T N+ PL
Sbjct: 59 TGELYFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112
Query: 1322 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLD 1381
S +EI + + + +A+I+ L P G Q+Q V LAR L+K +L+LD
Sbjct: 113 SKEEIRKRVEE--VAKILDIHHVLNHFPRELSG-----AQQQRVALARALVKDPSLLLLD 165
Query: 1382 EATASIDTATDNVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVLD 1428
E +++D ++ + R T++ V+H D D V VL
Sbjct: 166 EPFSNLDAR----MRDSARALVKEVQSRLGVTLLVVSH------DPADIFAIADRVGVLV 215
Query: 1429 EGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
+GK+++ P L ++ S VA +
Sbjct: 216 KGKLVQVGKPEDLYDNPVSIQ---VASLI 241
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 48/214 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-----------AYVPQS 667
+ G + G G+GK+ L I G +P I + GK A+V Q+
Sbjct: 23 VESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQN 80
Query: 668 -------SWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+++N+ FG M+ + VL+ + + + +R
Sbjct: 81 YSLFPHM------NVKKNLEFGMRMKKIKDPKRVLDTARDLK---------IEHLLDRNP 125
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC-LMGLLSQK----TV 773
LSGG++QR+ LARA+ +N + + D+P SA+D T + + L L K TV
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA--REMLSVL--HKKNKLTV 181
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
L+ TH Q E AD + V+ DGK+ Q GK E++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 54/239 (22%), Positives = 88/239 (36%), Gaps = 78/239 (32%)
Query: 1254 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-------ML 1306
G TG+GK+ ++ + P GRIL+DG D++ + +
Sbjct: 33 GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---------------SPEKHDIAFV 77
Query: 1307 FQG-------TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED----- 1353
+Q V+ NL+ + + K + V R L D
Sbjct: 78 YQNYSLFPHMNVKKNLEFGMR----------MKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 1354 --GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR------ 1405
G G++Q V LAR L+ +IL+LDE + A D Q+ RE S
Sbjct: 128 LSG-----GEQQRVALARALVTNPKILLLDEPLS----ALDPRTQENAREMLSVLHKKNK 178
Query: 1406 CTVITVAHRIPTVID-------NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
TV+ + H D D + V+ +GK+++ P ++ E VA F+
Sbjct: 179 LTVLHITH------DQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---VASFV 228
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 39/222 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V V G GSGKS+ L + + I + G + +RE
Sbjct: 45 VHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINLKAKDT---NLNKVRE 100
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVVG--ERG-- 718
+ +F Q F + VL L E A L VG ++
Sbjct: 101 EVGMVF-----QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 719 --INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQK--T 772
+LSGGQ QR+ +ARA+ + +FD+P SA+D + + L M L+ + T
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLSVMKQLANEGMT 211
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSE 813
++ TH++ F + D VL M G I + GK EDL E
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHE 253
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 36/243 (14%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
I++ L + VLKGI GE + V+G +GSGKST ++ L + + G I
Sbjct: 25 IDVHQLKKSFGSL--EVLKGINVHIREGEV-VVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1279 LIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP----LEQHSDQEIWEVINK 1332
+IDG+++ L +R + M+FQ R NL P L + + + K
Sbjct: 82 IIDGINLKAKDTNLNKVREEVG------MVFQ---RFNLFPHMTVLNNITLAPMK--VRK 130
Query: 1333 CHLAEIVRQDQRLLD-APVAEDGENW----SVGQRQLVCLARVLLKKKRILVLDEATASI 1387
+ + LLD + + + S GQ Q V +AR L + +I++ DE T+++
Sbjct: 131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 1388 DTATDNVIQQTIRE-ETSRCTVITVAH-----RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1441
D + +++ T++ V H R V D VL +D G ++E P L
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR--EVGDR--VLFMDGGYIIEEGKPEDL 246
Query: 1442 LED 1444
+
Sbjct: 247 FDR 249
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ +ARA+ +V + D+P S +DA L + L ++ T
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR------LQKELGITT 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q E L AD + V+++G+I Q G
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 69/270 (25%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV----EPS 1274
+I+LEN++ ++ L I + + ++G +GSGKSTL+ + +P+
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLL----YTIAGIYKPT 56
Query: 1275 GGRILIDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLE--QH 1321
G+I D D++ +L P+D ++FQ TV N+ PLE +
Sbjct: 57 SGKIYFDEKDVT-----ELP------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105
Query: 1322 SDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380
+EI + + + A+++ D+ LL+ P G GQ+Q V +AR L+K+ +L+L
Sbjct: 106 PREEIDKKVREV--AKMLHIDK-LLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLL 157
Query: 1381 DEATASIDTATDNVIQQTIREETSR------CTVITVAHRIPTVID-------NDLVLVL 1427
DE +++D A + + R E R T + V H D D + V+
Sbjct: 158 DEPLSNLD-ALLRL--EV-RAELKRLQKELGITTVYVTH------DQAEALAMADRIAVI 207
Query: 1428 DEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
EG++L+ +P ++ F V FL
Sbjct: 208 REGEILQVGTPDEVYYKPKYKF---VGGFL 234
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ +ARA+ DV + D+P S +DA + K L QK T
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK------LQQKLKVTT 195
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q+E + D + VM G++ Q G
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ LARA+ V +FD+P S +DA + L Q+ T
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH------LQQELGITS 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+Y TH Q E + A + V GK+ Q G +++
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 6e-11
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 1221 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280
E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1281 DGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNLD--PLEQHSDQEIWEVINKCH-- 1334
+G DI+ + R ++++P+ +F TV NL + + I +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 1335 ---LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDE 1382
L E R Q G S G++Q++ + R L+ + ++L++DE
Sbjct: 126 FPRLKE--RLKQL---------GGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 9e-11
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---T 772
LSGGQ+QR+ L RA+ V++ D+P S +DA L K L ++ T
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK------LQRQLGVT 192
Query: 773 VLYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q+E + D + VM G ++Q G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR- 676
+ + KG V++ G+ GSGKS+LL ILG + + + + GK+ V ++ + +R
Sbjct: 25 LSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKE--VDYTNEKELSLLRN 81
Query: 677 ENILFGKDMRQSFY----EEVLEGCAL--------NQDIEMWADGDLSVVG--ERGIN-- 720
+ F + Q Y LE + ++ + + LS +G ++
Sbjct: 82 RKLGF---VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGG++QR+ +ARA+ + + D+P +D+ +M + + ++
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VMDIFLKINEGGTSI 193
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQ 799
+ TH+ E + L MKDGK+
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 63/248 (25%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+ EN+ +LKGI+ + GE + ++G +GSGKSTL+ L + P+ G++
Sbjct: 5 LRAENIKKVIR-GYE-ILKGISLSVKKGEF-VSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1279 LIDGVDISMIG---LQDLRSRLSI---------IPQD--------PMLFQGTVRTNLDPL 1318
++G ++ L LR+R + IP+ PML G
Sbjct: 62 FLEGKEVDYTNEKELSLLRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGK-----PKK 115
Query: 1319 EQHSDQEIWEVINKCHLAEIVRQDQR---LLDAPVAEDGENWSVGQRQLVCLARVLLKKK 1375
E + ++++ L + + ++ L S G++Q V +AR L +
Sbjct: 116 EAK--ERGEYLLSELGLGD--KLSRKPYEL------------SGGEQQRVAIARALANEP 159
Query: 1376 RILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITV---------AHRIPTVIDNDLV 1424
+L DE T ++D+A + + E +++ V HR + D
Sbjct: 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGT-SIVMVTHERELAELTHRTLEMKDG--K 216
Query: 1425 LVLDEGKV 1432
+V + +V
Sbjct: 217 VVGEITRV 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 42/211 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR- 676
+ I +G V++ G GSGKS++L+ I+G + + + + + K + IR
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIK--TNDLDDDELTKIRR 82
Query: 677 ENILFGKDMRQSF--------YEEV--------LEGCALNQDIEMWADGDLSVVG--ERG 718
+ I F + Q F E V + + + A L + ER
Sbjct: 83 DKIGF---VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-ALECLKMAELEERF 138
Query: 719 IN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
N LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG +M LL +
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK-----IMQLLKKLNE 193
Query: 771 ---KTVLYTTHQLEFLDAADLVLVMKDGKIE 798
KTV+ TH + + ++ +KDG++E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 53/222 (23%), Positives = 92/222 (41%), Gaps = 47/222 (21%)
Query: 1220 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTL---IQALFRVVEP 1273
++L+N+ Y + LK + GE + ++G +GSGKST+ I L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEF-VSIMGPSGSGKSTMLNIIGCLDK---P 57
Query: 1274 SGGRILIDGVDISMIG---LQDLRSRLSI---------IPQD--------PMLFQGTVRT 1313
+ G + ID + + + L +R I IP P++F+ R
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRD-KIGFVFQQFNLIPLLTALENVELPLIFKY--RG 114
Query: 1314 NLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373
+ E+ + E + L E R + + S GQ+Q V +AR L
Sbjct: 115 AMSGEERR--KRALECLKMAELEE------RFANHKPNQ----LSGGQQQRVAIARALAN 162
Query: 1374 KKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAH 1413
I++ D+ T ++D+ T I Q +++ E TV+ V H
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ + R + + V++ D+P S +DA + + L ++ T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR------LHKRLGRTM 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGK 802
+Y TH Q+E + AD ++V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLRSRLSIIP--QDPML 1306
++G GSGKSTLI + ++ GR+ + DI+ + I+ Q P
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT--NKEPAELYHYGIVRTFQTPQP 93
Query: 1307 FQG-TVRTN-LDPLEQHSDQEIWEVINKCHLA---EIVRQDQRLLD----APVAED-GEN 1356
+ TV N L + + + K + E+V + ++L+ + + +
Sbjct: 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153
Query: 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSR-CTVITVAHRI 1415
S GQ +LV + R L+ +++V+DE A + + I + E ++ T + + HR+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 1416 PTVIDN-DLVLVLDEGKVL 1433
V++ D + V+ G+++
Sbjct: 214 DIVLNYIDHLYVMFNGQII 232
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 721 LSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTV 773
LSGG++ + LA + + I D+P +D L + L + V
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQV 307
Query: 774 LYTTHQLEFLDAAD-LVLVMKDG 795
+ +H E DAAD ++ + +
Sbjct: 308 ILVSHDEELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 721 LSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTV 773
LSGG++ + LA + + I D+P +D L + L + V
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQV 116
Query: 774 LYTTHQLEFLDAADLVL 790
+ +H E DAAD V+
Sbjct: 117 ILVSHDEELKDAADHVI 133
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1470 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-68 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-65 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-48 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-62 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-41 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-58 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-43 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-45 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-55 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-53 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-34 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-33 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-27 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-23 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-14 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-14 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 9e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-05 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 228 bits (584), Expect = 2e-68
Identities = 72/244 (29%), Positives = 133/244 (54%), Gaps = 2/244 (0%)
Query: 1212 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271
P G+I+++++ QYN +LK I + + + VG +G GKSTLI + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1272 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-DPLEQHSDQEIWEVI 1330
+ + G+ILIDG +I LR+++ ++ QD +LF TV+ N+ +D+E+ E
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
+ + + + D V E G S GQ+Q + +AR+ L IL+LDEAT+++D
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1391 TDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450
++++IQ+ + + T + VAHR+ T+ D ++V++ G ++E + R+L+ ++
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247
Query: 1451 KLVA 1454
L +
Sbjct: 248 HLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 172 bits (438), Expect = 6e-49
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I KG VA G G GKS+L++ I SG I + G V
Sbjct: 39 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLRNQIGLV 97
Query: 665 PQSSWIQTGTIRENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
Q + + + T++ENIL G E + + I G + VGERG+ LSG
Sbjct: 98 QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 157
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
GQKQR+ +AR +N + I D+ SA+D + + + ++ L L +T L H+L +
Sbjct: 158 GQKQRLSIARIFLNNPPILILDEATSALDLESESII-QEALDVLSKDRTTLIVAHRLSTI 216
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
AD ++V+++G I ++G + +LIA +
Sbjct: 217 THADKIVVIENGHIVETGTHRELIA--KQGAYEHL 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 218 bits (558), Expect = 5e-65
Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 3/239 (1%)
Query: 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1276
+G +E N+ Y L+ I P K + +VGR+GSGKST+ + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1277 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEVINKCH 1334
IL+DG D+ L LR++++++ Q+ LF TV N E++S ++I E +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
+ + + LD + E+G S GQRQ + +AR LL+ IL+LDEAT+++DT ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1395 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
IQ + E T + +AHR+ T+ D ++V+++G ++E + +LL +++L
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 170 bits (431), Expect = 6e-48
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 27/260 (10%)
Query: 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSV 632
D K+ I T ++ + + RE P ++ + +KI G VA+ G
Sbjct: 1 DEGKRVIDRATGD-----LEFRNVTFTYPGRE----VPALRNIN-LKIPAGKTVALVGRS 50
Query: 633 GSGKSSLLSSILGEIP------RISGAAIK------VHGKKAYVPQSSWIQTGTIRENIL 680
GSGKS++ S I + G ++ + + A V Q+ + T+ NI
Sbjct: 51 GSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 110
Query: 681 FG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
+ ++ + EE I +G +++GE G+ LSGGQ+QRI +ARA+ +
Sbjct: 111 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
S + I D+ SA+D + + L L +T L H+L ++ AD ++V++DG I
Sbjct: 171 SPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 229
Query: 799 QSGKYEDLIADQNSELVRQM 818
+ G + +L+A + Q+
Sbjct: 230 ERGTHSELLA--QHGVYAQL 247
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 210 bits (537), Expect = 2e-62
Identities = 72/235 (30%), Positives = 131/235 (55%), Gaps = 1/235 (0%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-DPLEQHSDQEIWEVINKCHLAEI 1338
IDG D+++ LR ++ ++ QD +L ++ N+ S +++ +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1339 VRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQT 1398
+ + + + V E G S GQRQ + +AR L+ +IL+ DEAT+++D +++VI +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1399 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453
+ + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 151 bits (383), Expect = 1e-41
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I +G + + G GSGKS+L I + + G V
Sbjct: 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVV 82
Query: 665 PQSSWIQTGTIRENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
Q + + +I +NI M + + I +G ++VGE+G LSG
Sbjct: 83 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 142
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
GQ+QRI +ARA+ +N + IFD+ SA+D + + + + + +TV+ H+L +
Sbjct: 143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM-RNMHKICKGRTVIIIAHRLSTV 201
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSE 813
AD ++VM+ GKI + GK+++L+++ S
Sbjct: 202 KNADRIIVMEKGKIVEQGKHKELLSEPESL 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 200 bits (509), Expect = 2e-58
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 6/245 (2%)
Query: 1214 WPSSGKIELENLLVQY-NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1272
G ++ +++ Y N +VL+G+T T + +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1273 PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVI 1330
P+GG++L+DG + + L +++ + Q+P +F +++ N+ ++ + +EI
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
K + + D V E G S GQRQ V LAR L++K +L+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448
+ ++Q + E E +V+ + + V D +L L+ G + E + +QL+E
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGC 244
Query: 1449 FSKLV 1453
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 1e-43
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 21/218 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ G A+ G GSGKS++ + + +G + + GK A V
Sbjct: 35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLPQYEHRYLHRQVAAV 93
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYE--EVLEGCALNQDIEMWADGDLSVVGERGINLS 722
Q + +++ENI +G + + E + I G + V E G LS
Sbjct: 94 GQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLS 153
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL 780
GGQ+Q + LARA+ V I DD SA+DA++ + Q L + ++VL T L
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE-QLLYESPERYSRSVLLITQHL 212
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
++ AD +L ++ G I + G ++ L+ M
Sbjct: 213 SLVEQADHILFLEGGAIREGGTHQQLME--KKGCYWAM 248
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 196 bits (499), Expect = 3e-57
Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 4/238 (1%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ ++ Y+ + +L+ I+ I G +G GKST+ L R +P+ G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINKCHLAE 1337
IDG I I L++ RS++ + QD + GT+R NL ++D+++W+V++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
V L+ V E G S GQRQ + +AR L+ +IL+LDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1398 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455
+ T + +AHR+ T++D D + +++G++ +L+ ++K V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 160 bits (407), Expect = 6e-45
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ S +A G G GKS++ S + +G I + G+ +V
Sbjct: 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE-ITIDGQPIDNISLENWRSQIGFV 81
Query: 665 PQSSWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
Q S I GTIREN+ +G D +VL+ +E D + VGERG+ +S
Sbjct: 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QR+ +ARA N + + D+ +++D+ + + + ++ L L+ +T L H+L
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV-QKALDSLMKGRTTLVIAHRLST 200
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ AD + ++ G+I SGK+ +L+A L +
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVA--THPLYAKY 234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 193 bits (491), Expect = 1e-55
Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 17/281 (6%)
Query: 559 TKVSLYRIQEF----IKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKL 614
T + + + F E +K + K S ++ P +K
Sbjct: 1 TGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN------PVLKN 54
Query: 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGT 674
+ + I KG +A+ GS GSGK+SLL ILGE+ G IK G+ ++ Q SWI GT
Sbjct: 55 IN-LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-IKHSGRVSFCSQFSWIMPGT 112
Query: 675 IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
I+ENI+FG + Y+ V++ C L QDI +A+ D +V+GE G+ LSGGQ+ RI LARA
Sbjct: 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794
VY ++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 795 GKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK 835
G G + +L + + ++ + D + E++
Sbjct: 233 GSSYFYGTFSELQS-LRPDFSSKLMGY----DTFDQFTEER 268
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 187 bits (476), Expect = 1e-53
Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 20/272 (7%)
Query: 1186 ISVERILQFTNIPSEAPL--VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCT 1243
I +E + F L V +++ + +L + NP VLK I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1303
+ + + G TGSGK++L+ + +E S G I G R+S Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1304 PMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1363
+ GT++ N+ + + V+ C L + + + + + E G S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1364 LVCLARVLLKKKRILVLDEATASIDTAT-DNVIQQTIREETSRCTVITVAHRIPTVIDND 1422
+ LAR + K + +LD +D T + V + + + + T I V ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1423 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454
+L+L +G Y + +L SKL+
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 130 bits (328), Expect = 3e-34
Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 31/262 (11%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
K+ + +L +Y VLKG++ I ++G +GSGKST ++ + + +PS G I
Sbjct: 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1279 LIDGVDISMIGLQD-------------LRSRLSIIPQDPMLFQG-TVRTNLD--PLEQH- 1321
+++G +I+++ +D LR+RL+++ Q L+ TV N+ P++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1322 -SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVL 1380
S + E K V D+R S GQ+Q V +AR L + +L+
Sbjct: 120 LSKHDARERALK--YLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLF 173
Query: 1381 DEATASIDTATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSP 1438
DE T+++D + + +++ T++ V H + + V+ L +GK+ E P
Sbjct: 174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 1439 RQLLEDNSSSFSKLVAEFLRRT 1460
Q+ + S + +FL+ +
Sbjct: 234 EQVFGNPQSPR---LQQFLKGS 252
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (254), Expect = 2e-24
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 28/236 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSW 669
++ G +++ GS GSGKS+ L I GA I V+G+ + +
Sbjct: 23 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLKVADK 81
Query: 670 IQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQ-----DIEMWADGDLSVVG--ER 717
Q +R + F + E V+E D A L+ VG ER
Sbjct: 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 141
Query: 718 GIN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
LSGGQ+QR+ +ARA+ DV +FD+P SA+D + + KT
Sbjct: 142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 201
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ-MKAHRKSLD 826
++ TH++ F + V+ + GKIE+ G E + + S ++Q +K K L+
Sbjct: 202 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLE 257
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 128 bits (324), Expect = 7e-34
Identities = 58/246 (23%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+++LENL ++ + + T + + ++G +G GK+T ++ + + EP+ GRI
Sbjct: 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVINKCH 1334
D++ L +S++ Q ++ TV N+ PL+ EI + +
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--W 119
Query: 1335 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNV 1394
AE+++ ++ L+ A+ S GQRQ V +AR ++ + +L++DE +++D
Sbjct: 120 AAELLQIEEL-LNRYPAQ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 1395 IQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
++ I++ + + T I V H + D + V++ G++L+ SP ++ +S F
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF-- 232
Query: 1452 LVAEFL 1457
VA F+
Sbjct: 233 -VATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (275), Expect = 3e-27
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 33/221 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G + + G G GK++ L I G G I + + V Q
Sbjct: 27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR-IYFGDRDVTYLPPKDRNISMVFQ 85
Query: 667 SSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ERGI 719
S + T+ ENI F +++ +E I+ ++
Sbjct: 86 SYAVWPHMTVYENIAFPLKIKKFPKDE----------IDKRVRWAAELLQIEELLNRYPA 135
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
LSGGQ+QR+ +ARA+ DV + D+P S +DA + + L + T +Y T
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVT 194
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H D + VM G++ Q G ++ NS V
Sbjct: 195 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 235
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 126 bits (319), Expect = 3e-33
Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 1220 IELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
I+L+N+ Y + LK + + + ++G +GSGKST++ + + +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1278 ILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEV 1329
+ ID + + + +L R ++ + Q L T N++ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1330 INKC-HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
+ ++ ++R + + S GQ+Q V +AR L I++ D+ T ++D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1389 TATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1439
+ T I Q +++ E TV+ V H I + ++ L +G+V + R
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (260), Expect = 2e-25
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ I +G V++ G GSGKS++L+ I + + + + + K
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 662 -AYVPQSSW-IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V Q I T EN+ + E + A+ + +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + + L L + KTV+ T
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVT 203
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H + + ++ +KDG++E+ K
Sbjct: 204 HDINVARFGERIIYLKDGEVEREEK 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 122 bits (308), Expect = 9e-32
Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 22/249 (8%)
Query: 1220 IELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
I+L N+ + L ++ P + GV+G +G+GKSTLI+ + + P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1278 ILIDGVDISMIGLQD---LRSRLSIIPQDPMLF-QGTVRTNLD-PLEQH--SDQEIWEVI 1330
+L+DG +++ + + R ++ +I Q L TV N+ PLE E+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1331 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTA 1390
+ L +V + P N S GQ+Q V +AR L ++L+ DEAT+++D A
Sbjct: 122 TE--LLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1391 TDNVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447
T I + +++ T++ + H + V D V V+ G+++E D+ ++ +
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 234
Query: 1448 SFSKLVAEF 1456
+F
Sbjct: 235 PL---AQKF 240
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 9e-23
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ + G V G+ G+GKS+L+ + G+ + V G++
Sbjct: 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTKARRQI 84
Query: 662 AYVPQS-SWIQTGTIRENILFG-------KDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+ Q + + + T+ N+ KD + E+L L + +
Sbjct: 85 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS----- 139
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQKT 772
NLSGGQKQR+ +ARA+ SN V + D+ SA+D A T + L + T
Sbjct: 140 ------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+L TH+++ D V V+ +G++ + ++ + + L ++
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQK 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 1e-28
Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 28/236 (11%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
++L+++ L ++ + + +VG G+GKSTL+ + + G I
Sbjct: 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNL-DPLEQHSDQEIWEVINKCHLAE 1337
G + L + + Q F V L + E+ +A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN-----DVAG 111
Query: 1338 IVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK-------KKRILVLDEATASIDTA 1390
+ LD + S G+ Q V LA V+L+ ++L+LDE S+D A
Sbjct: 112 ALA-----LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1391 TDNVIQQTIREETSR-CTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLED 1444
+ + + + + ++ +H + + + +L GK+L ++L
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 4e-21
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 19/209 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
++ G + + G G+GKS+LL+ + G +I+ G+ ++ +
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAWSATKLALHRAYL 77
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWAD-----GDLSVVGERGINLSGGQKQRIQLA 732
+ + + E+ D +G LSGG+ QR++LA
Sbjct: 78 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
Query: 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEF- 782
V + + D+P +++D + L K ++ L Q ++ ++H L
Sbjct: 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK--ILSALCQQGLAIVMSSHDLNHT 195
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
L A ++K GK+ SG+ E+++ N
Sbjct: 196 LRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (278), Expect = 1e-27
Identities = 51/251 (20%), Positives = 106/251 (42%), Gaps = 16/251 (6%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+ EN++ + L G++ + ++G GSGKSTLI + ++ GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1280 IDGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHL-- 1335
+ DI+ +L + Q P + TV NL E + +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1336 --AEIVRQDQRLLDAPVAEDGEN-----WSVGQRQLVCLARVLLKKKRILVLDEATASID 1388
E+V + ++L+ + S GQ +LV + R L+ +++V+DE A +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1389 TATDNVIQQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446
+ I + E ++ T + + HR+ V++ D + V+ G+++ + +++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL 242
Query: 1447 SSFSKLVAEFL 1457
S K+V ++
Sbjct: 243 SD-PKVVEIYI 252
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (262), Expect = 1e-25
Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 27/227 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------Y 663
+ + KG + G GSGKS+L++ I G + G + K
Sbjct: 25 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR-VYFENKDITNKEPAELYHYGIVR 83
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI--- 719
Q+ ++ T+ EN+L G+ L E + ++ +
Sbjct: 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 143
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773
LSGGQ + +++ RA+ +N + + D+P + V +F L T
Sbjct: 144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 203
Query: 774 LYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD-QNSELVRQM 818
L H+L+ L+ D + VM +G+I G+ E+ I + + V ++
Sbjct: 204 LIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 109 bits (274), Expect = 3e-27
Identities = 46/248 (18%), Positives = 112/248 (45%), Gaps = 19/248 (7%)
Query: 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277
G + +++L + +LKGI+ + G++G G+GK+T ++ + +++PS G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1278 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQH---SDQEIWEVINKC 1333
+ + G ++ + ++R +S +P++ ++ L + S EI E++ +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER- 116
Query: 1334 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
EI +++ D +S G + + +AR L+ R+ +LDE T+ +D
Sbjct: 117 -ATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 1394 VIQQTIREETSRCTVITVAHRIPTVIDN--DLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1451
+++ +++ + I V+ ++ D + ++ G ++E + +L E +
Sbjct: 171 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN-- 228
Query: 1452 LVAEFLRR 1459
+ E
Sbjct: 229 -IEEVFEE 235
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 97.4 bits (242), Expect = 5e-23
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+I +G + G G+GK++ L I I SG P + E
Sbjct: 23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82
Query: 678 NILFGKDMRQSFYEEVLEGCAL--NQDIEMWADGDLSVVG------ERGINLSGGQKQRI 729
++M+ Y + G + +IE + + G +R S G +++
Sbjct: 83 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL 142
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADL 788
+ARA+ N + I D+P S +D + K T+L ++H + ++ D
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ ++ +G I ++G E+L ++ + +
Sbjct: 203 IALIHNGTIVETGTVEELKERYKAQNIEE 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 108 bits (272), Expect = 6e-27
Identities = 46/248 (18%), Positives = 107/248 (43%), Gaps = 19/248 (7%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+ L ++ + ++ ++ + + ++G +G GK+T ++ + + EPS G+I
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW-EVINKCHLAE 1337
I ++ + + P+D + L P D + + K E
Sbjct: 61 YIGDKLVAD-----PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1338 IVRQDQRLLDAPVAEDGENW-----SVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392
I ++ + + + + N S GQRQ V L R +++K ++ ++DE +++D
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1393 NVIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449
++ +++ T I V H + D + V++ G + + SP ++ + +++F
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Query: 1450 SKLVAEFL 1457
VA F+
Sbjct: 236 ---VAGFI 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 106 bits (265), Expect = 5e-26
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 15/215 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKAYVPQSSWIQ 671
+++ G + + G G GK++ L I G I + K +VP
Sbjct: 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALN-QDIEMWADGDLSVVGERGI------NLSGG 724
+ L+ L+ + Q+I+ ++G + LSGG
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGG 143
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGLLSQKTVLYTTHQLEF- 782
Q+QR+ L RA+ V++ D+P S +DA + + + T +Y TH
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ D + VM G ++Q G +++ + V
Sbjct: 204 MTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 1e-26
Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 21/245 (8%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
++L+N+ + + V K I + + VG +G GKSTL++ + + + G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD---PLEQHSDQEIWEVINKCHL 1335
I ++ + ++ Q L+ +V N+ L + I + +N+ +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ--V 114
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
AE+++ LD S GQRQ V + R L+ + + +LDE +++D A +
Sbjct: 115 AEVLQLAHL-LDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169
Query: 1396 QQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1452
+ I + T+I V H + D ++VLD G+V + P +L + F
Sbjct: 170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF--- 226
Query: 1453 VAEFL 1457
VA F+
Sbjct: 227 VAGFI 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 99.3 bits (247), Expect = 9e-24
Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 15/212 (7%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V G G GKS+LL I G I+ + + K+ + G + +
Sbjct: 21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQ 79
Query: 678 NILFGKDMRQSFYEEVLEGCALN----QDIEMWADGDLSVVGERGI------NLSGGQKQ 727
+ + E + G L + I + V+ + LSGGQ+Q
Sbjct: 80 SYALYPHLS--VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 137
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA- 785
R+ + R + + V++ D+P S +DA + + T++Y TH
Sbjct: 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 197
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
AD ++V+ G++ Q GK +L V
Sbjct: 198 ADKIVVLDAGRVAQVGKPLELYHYPADRFVAG 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 106 bits (266), Expect = 3e-26
Identities = 52/247 (21%), Positives = 109/247 (44%), Gaps = 16/247 (6%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
+I ++N+ + + L + ++ G++G +G+GK+T ++ + + PS G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1279 LIDGVDISMIGLQDLRSR---LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1335
D ++ G + + ++ Q L+ NL E + ++K +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEI 117
Query: 1336 AEIVRQDQRLLDAPVAEDGE--NWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN 1393
+ V + ++LD + S Q+Q V LAR L+K +L+LDE +++D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1394 VIQQTIRE--ETSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450
+ ++E T++ V+H + D V VL +GK+++ P L ++ S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ- 236
Query: 1451 KLVAEFL 1457
VA +
Sbjct: 237 --VASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 89.8 bits (222), Expect = 2e-20
Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 14/214 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKAYVPQSSWIQ 671
+ I G + + G G+GK++ + I G + +GK P+ I
Sbjct: 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSGGQ 725
+ ++ + ++I + ++ + LSG Q
Sbjct: 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ 145
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLD 784
+QR+ LARA+ + + + D+PFS +DA T+L +H +
Sbjct: 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
A AD V V+ GK+ Q GK EDL + S V
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (257), Expect = 2e-25
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1278
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P G I
Sbjct: 2 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1279 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEI--WEVINKCHL 1335
+ +GV I ++ ++ +P++ ++ + +V L + ++ E+++
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
E++ ++L S G + V LA LL I VLD+ +ID + + +
Sbjct: 114 VEVLDLKKKL---------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 1396 QQTIREETSRCTVITVAHR 1414
++I E ++ ++ R
Sbjct: 165 LKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.7 bits (212), Expect = 2e-19
Identities = 35/182 (19%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------AYVPQSS- 668
M I KG+ V G G GK++LL +I + + I +G ++P+
Sbjct: 22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPITKVKGKIFFLPEEII 80
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
+ ++ + + + + N+ ++ ++ + ++ LS G +R
Sbjct: 81 VPRKISVEDYLKAVASLYGVKVNK-------NEIMDALESVEVLDLKKKLGELSQGTIRR 133
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAA 786
+QLA + N+++Y+ DDP A+D + H + ++ +L +K ++ + +L + D
Sbjct: 134 VQLASTLLVNAEIYVLDDPVVAIDEDS-KHKVLKSILEILKEKGIVIISSREELSYCDVN 192
Query: 787 DL 788
+
Sbjct: 193 EN 194
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 100 bits (251), Expect = 2e-24
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
IE+E+L ++ L ++ + ++G TG+GK+ ++ + P GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1280 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1339
+DG D++ L + ++ + Q+ LF +++ + E + K + V
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFP-----HMNVKKNL---EFGMRMKKIKDPKRV 108
Query: 1340 RQDQRLLDAPVAED--GENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQ 1397
R L D S G++Q V LAR L+ +IL+LDE +++D T ++
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 1398 TIRE--ETSRCTVITVAHRIPTVIDN-DLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454
+ + ++ TV+ + H D + V+ +GK+++ P ++ E VA
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---VA 225
Query: 1455 EFL 1457
F+
Sbjct: 226 SFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 99.0 bits (246), Expect = 1e-23
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+K+ G + G G+GK+ L I G I + GK A+V Q
Sbjct: 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
+ S +++N+ FG M++ + + A + IE D + LSGG+
Sbjct: 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTLSGGE 132
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-QCLMGLLSQKTVLYTTHQLEFLD 784
+QR+ LARA+ +N + + D+P SA+D T + + ++ ++ TVL+ TH
Sbjct: 133 QQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
AD + V+ DGK+ Q GK E++ V
Sbjct: 193 IMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVAS 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 100 bits (250), Expect = 5e-24
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+K+ +G V + G+ G+GK++ LS+I G + G I P + G
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIE------MWADGDLSVVGER----GINLSGGQKQ 727
+ YE ++ G +D E W + ER G LSGG++Q
Sbjct: 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ 146
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEF-LDA 785
+ + RA+ S + + D+P + + + + + T+L L
Sbjct: 147 MLAIGRALMSRPKLLMMDEPSLGLAPIL-VSEVFEVIQKINQEGTTILLVEQNALGALKV 205
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQ 810
A V++ G+I GK +L+ ++
Sbjct: 206 AHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 44/231 (19%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279
+E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1280 IDGVDISMIGLQDLRSR-LSIIPQDPMLF-QGTVRTNL--DPLEQHSDQEIWEVINKCHL 1335
+G DI+ + ++++P+ +F + TV NL + + I + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW--I 122
Query: 1336 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVI 1395
+ + + L S G++Q++ + R L+ + ++L++DE + + + +
Sbjct: 123 FSLFPRLKERLKQLGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1396 QQTIREETSR-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444
+ I++ T++ V + VL+ G+++ +LL++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 98.2 bits (244), Expect = 3e-23
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 1250 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-- 1307
++G TG+GKS ++ + +V+P G + ++G DI+ L R + +PQD LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPH 84
Query: 1308 QGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367
R L E + + +AE + LD A S G+RQ V L
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVRE--MAEKLGIAHL-LDRKPAR----LSGGERQRVAL 137
Query: 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDN-DLV 1424
AR L+ + R+L+LDE +++D T V+ + +R ++ V H + D V
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 1425 LVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1457
V+ G+++E ++L + VAEFL
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNG----EVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 89.7 bits (222), Expect = 2e-20
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 9/201 (4%)
Query: 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL 680
M + G G+GKS L I G + G ++++G G + ++
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGFVPQDYA 80
Query: 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ERGINLSGGQKQRIQLARA 734
+ + + +G + LSGG++QR+ LARA
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEF-LDAADLVLVM 792
+ + + D+P SAVD T L ++ +L+ TH L AD V VM
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 793 KDGKIEQSGKYEDLIADQNSE 813
+G+I + GK ++L + +N E
Sbjct: 201 LNGRIVEKGKLKELFSAKNGE 221
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 76.6 bits (187), Expect = 2e-16
Identities = 15/186 (8%), Positives = 43/186 (23%), Gaps = 28/186 (15%)
Query: 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1308
KI + G G GK+TL++ + + + V + ++ + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1309 GTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLA 1368
+ + + +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1369 RVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLD 1428
+++++++DE + V+ + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1429 EGKVLE 1434
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 70.4 bits (171), Expect = 3e-14
Identities = 17/178 (9%), Positives = 45/178 (25%), Gaps = 17/178 (9%)
Query: 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKD 684
K+ + G G GK++L+ I+ + ++ T +R+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLG----------------KRAIGFWTEEVRDPETKKRT 45
Query: 685 MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744
+ E + ++ V + A V I
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802
D+ ++ + + V+ T + + + + +
Sbjct: 106 DEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.8 bits (172), Expect = 2e-14
Identities = 21/179 (11%), Positives = 52/179 (29%), Gaps = 7/179 (3%)
Query: 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1307
+ + + G G GK+TLI V++ SG + + G + + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1308 QGTVRTNLDPL------EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ 1361
+ D +E + L V ++ +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1362 RQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1420
+ + R L ++L ++++ + + +T +R + D
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLPD 179
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 53.4 bits (126), Expect = 9e-08
Identities = 34/308 (11%), Positives = 99/308 (32%), Gaps = 8/308 (2%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L + +N + L+ + GK D S L + V + + +
Sbjct: 15 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS---VLLWMPLVVIGLMILRGI 71
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIH 393
T + + + +V + ++ M + A +++
Sbjct: 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 131
Query: 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR 453
+ V+ +++ L+ + ++ + + + + +RF S+ ++
Sbjct: 132 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 454 IKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF-----WAS 508
+ T+ + ++ K + + R ++ + + SA + AS
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 509 PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568
L V+ + LT+G + ++ L P+ +L + + + + +
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 569 FIKEDNQK 576
+ + +K
Sbjct: 312 ILDSEQEK 319
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 33/309 (10%), Positives = 88/309 (28%), Gaps = 9/309 (2%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS----YHYGLVLASVFLFAKT 329
+ + + P LI + + H ++ +H + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 330 VESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF 389
V + + A ++ + +Y A+ ++ + +I+ + +
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 390 LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA 449
+I + + ++I + L + + R + E
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192
Query: 450 KDARIKATSETLKSMR-----VLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504
A + + ++ + + + R S A
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
+ VI G + + +T G + + + +L P+ L + + Q+ S+
Sbjct: 253 TVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMD 312
Query: 565 RIQEFIKED 573
R+ + I ED
Sbjct: 313 RVFQLIDED 321
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1470 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.72 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.55 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.41 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.28 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.05 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.5 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.39 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.11 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.08 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.04 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.01 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.94 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.87 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.77 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.7 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.36 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.15 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.11 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.82 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.81 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.74 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.67 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.5 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.45 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.42 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.21 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.15 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.99 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.9 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.89 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.87 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.82 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.76 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.75 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.68 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.65 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.61 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.6 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.59 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.51 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.49 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.45 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.41 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.39 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.38 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.37 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.36 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.35 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.28 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.12 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.06 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.0 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.0 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.95 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.88 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.86 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.83 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.77 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.74 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.68 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.68 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.43 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.37 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.34 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.33 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.27 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.19 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.19 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.15 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.09 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.07 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.04 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.04 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.97 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.9 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.85 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.82 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.81 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.78 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.74 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.73 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.72 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.58 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.58 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.55 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.29 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.27 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.24 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.2 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.12 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.91 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.85 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.84 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.82 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.82 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.8 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.77 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.75 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.63 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.55 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.53 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.52 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.48 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.39 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.38 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.36 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.32 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.28 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.27 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.24 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.24 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.2 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.19 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.18 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.05 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.04 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.94 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.92 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.91 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.9 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.84 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.81 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.81 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.77 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.7 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.7 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.59 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 90.57 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.52 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.47 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.44 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.39 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.28 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.22 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.21 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.14 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.08 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.05 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.97 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.96 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.93 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.93 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.93 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.9 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.88 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.88 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.87 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.85 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.82 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.81 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.81 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.8 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.63 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.61 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.56 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.54 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.51 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.47 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.44 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.43 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.25 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.06 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 88.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.88 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.86 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.72 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.69 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.68 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.66 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.57 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.52 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.43 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.31 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.29 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.19 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.18 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.14 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.12 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.11 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.11 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.09 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.02 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.02 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.94 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.92 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.88 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.81 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.79 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.73 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.68 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.62 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.61 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.6 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.57 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.56 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.48 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 87.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.35 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.34 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.3 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 87.22 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.22 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.18 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.17 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.08 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.02 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.97 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.93 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.91 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.9 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.76 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.75 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.72 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.68 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.63 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.62 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.49 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.44 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.37 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 86.35 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.2 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 86.2 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.2 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.15 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.13 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.12 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.1 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.1 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.07 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.01 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.87 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.82 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.78 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.75 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.74 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.74 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.71 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.71 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.65 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.52 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.41 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.38 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 85.28 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.28 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 85.27 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.18 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.16 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.15 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.1 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.04 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 84.94 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 84.92 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.74 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.73 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.72 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.7 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.68 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.66 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.6 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.58 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.56 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 84.53 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.5 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.5 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.38 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.28 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 84.24 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.07 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.03 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.01 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.98 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.97 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.84 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.75 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.74 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.73 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.7 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.43 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.36 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.33 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.3 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.28 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.24 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.18 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.18 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 82.98 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.98 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 82.92 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 82.8 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.7 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 82.57 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.56 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.51 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.51 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.5 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.43 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.4 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.38 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.26 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 82.25 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.21 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.15 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 82.13 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 82.11 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 82.06 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.93 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.92 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 81.9 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 81.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.7 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.57 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.52 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 81.5 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.49 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.28 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.21 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.21 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 81.2 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.19 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 81.1 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 80.96 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 80.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.57 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 80.53 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.5 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 80.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.43 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.42 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.38 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.34 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.29 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.19 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=492.73 Aligned_cols=237 Identities=30% Similarity=0.512 Sum_probs=229.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999788742418
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~is 1298 (1470)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 982677777665777038699-9999999999998491999984001347634579998892599999999987039988
Q 000475 1299 IIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1299 iIPQdp~LF~gTIR~NLdp~~-~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~I 1377 (1470)
+|||+|.+|++|||+|+.... ..++++++++++.+++.+++..+|.++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998466789999979999999998659937899714913342029899995987989459347861199869999999
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455 (1470)
Q Consensus 1378 LiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~~lv~~ 1455 (1470)
|+||||||++|+.|+..|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|++++++.|.+|++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 556477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=490.66 Aligned_cols=240 Identities=30% Similarity=0.501 Sum_probs=230.1
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99873799968988479989402211588518939999989999988999998417779975899969727999978874
Q 000475 1215 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1294 (1470)
Q Consensus 1215 p~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR 1294 (1470)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 241898267777766577703869-9999999999999849199998400134763457999889259999999998703
Q 000475 1295 SRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1295 s~isiIPQdp~LF~gTIR~NLdp~-~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr 1373 (1470)
++++|+||+|.+|++|||+|+... ...+|+++++|++.+++.+++..+|+|||+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99889984667899999799999999986599378997149133420298999959879894593478611998699999
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1374 ~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~~lv 1453 (1470)
+|+||+||||||++|++|+..|.+.|++..+++|+|+||||++++..||||++|++|+|+|.|+|++|++ +++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHHHHH
T ss_conf 9989998376544797799999999998753888999968999998599999998999999889999986-884999999
Q ss_pred HH
Q ss_conf 99
Q 000475 1454 AE 1455 (1470)
Q Consensus 1454 ~~ 1455 (1470)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=481.99 Aligned_cols=239 Identities=31% Similarity=0.502 Sum_probs=229.2
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 98737999689884799894022115885189399999899999889999984177799758999697279999788742
Q 000475 1216 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1295 (1470)
Q Consensus 1216 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs 1295 (1470)
..|.|+|+||+|+|+.+..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 41898267777766577703869--9999999999999849199998400134763457999889259999999998703
Q 000475 1296 RLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1296 ~isiIPQdp~LF~gTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr 1373 (1470)
+++++||+|.+|++|+++|+... ..+++++++++++.+++.+++..+|+|||+.++++|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99889984667899999799999999986599378997149133420298999959879894593478611998699999
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1374 ~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~~lv 1453 (1470)
+|+||+||||||++|+.|+..|.+.|++..+++|+|+||||++++..||+|+||++|+|+|+|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HH
Q ss_conf 99
Q 000475 1454 AE 1455 (1470)
Q Consensus 1454 ~~ 1455 (1470)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=470.62 Aligned_cols=239 Identities=27% Similarity=0.429 Sum_probs=225.4
Q ss_pred CCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 998737999689884799-8940221158851893999998999998899999841777997589996972799997887
Q 000475 1215 PSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1293 (1470)
Q Consensus 1215 p~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1293 (1470)
+.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|+|||+|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4241898267777766577703869--99999999999998491999984001347634579998892599999999987
Q 000475 1294 RSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1294 Rs~isiIPQdp~LF~gTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARAL 1371 (1470)
|+++++|||+|.+|++||++|+... ...++++++++.+++++.+++..+|+|+++.+++.|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 039988998466789999979999999998659--937899714913342029899995987989459347861199869
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1372 Lr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f 1449 (1470)
+++|+|++||||||++|+.|+..|++.|++..+ ++|+|+||||++++..||||+||++|+|+|+|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000475 1450 SKLVA 1454 (1470)
Q Consensus 1450 ~~lv~ 1454 (1470)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=476.93 Aligned_cols=234 Identities=29% Similarity=0.529 Sum_probs=224.0
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 79996898847998940221158851893999998999998899999841777997589996972799997887424189
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isi 1299 (1470)
|+++||+|+|+.+ +++|+||||+|++||++|||||||||||||+++|.|+++|++|+|.|||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8267777766577703869--99999999999998491999984001347634579998892599999999987039988
Q 000475 1300 IPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRI 1377 (1470)
Q Consensus 1300 IPQdp~LF~gTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~I 1377 (1470)
|||||.+|++|+|+|+... ...++++++++++.+++.+++..+|+++++.++++|.+||||||||+||||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998466789999979999999998659937899714913342029899995987989459347861199869999999
Q 000475 1378 LVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAE 1455 (1470)
Q Consensus 1378 LiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~~lv~~ 1455 (1470)
|+||||||++|+.++..|++.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|+++ ++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=408.56 Aligned_cols=228 Identities=29% Similarity=0.425 Sum_probs=209.0
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--
Q ss_conf 9889984189964699807875556788633247-6675189399998479999379998880787689884899889--
Q 000475 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1470)
Q Consensus 583 ~~~~~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g-- 659 (1470)
|....+..|+++|++|+|+.+ ..+.|+| ||+|++|+++||+|++|||||||+++|+|.+++.+|++ .++|
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~ 81 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHN 81 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE-EETTEE
T ss_pred CCCCCCCEEEEEEEEEEECCC------CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCCEE
T ss_conf 777778879999889995999------9760644389983998999988999809999999971278630001-539987
Q ss_pred -----------EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -----------7689837777888648999723977-8978999999980321799740178852005899877458999
Q 000475 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 660 -----------~iayv~Q~~wi~~~TIreNIlfg~~-~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkq 727 (1470)
.++||+|+|+++++||+|||.||.+ .++++..++++.+++.++++.+|+|++|.+|++|.+|||||||
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~Q 161 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 161 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred CCCCCHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHH
T ss_conf 53078888634145651015689987999985158679999999999996979999736242010333888984999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999998249999998276778799999999999997612995899981793215315989999498899940715678
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 728 Ri~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~ 807 (1470)
||+||||++++|+|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++
T Consensus 162 Ri~iARal~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl 240 (255)
T d2hyda1 162 RLSIARIFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240 (255)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999999855998999837654479779999999-999875388899996899999859999999899999988999998
Q ss_pred HHCHHHHHHHHH
Q ss_conf 520069999999
Q 000475 808 ADQNSELVRQMK 819 (1470)
Q Consensus 808 ~~~~~~~~~l~~ 819 (1470)
+ .++.|.++..
T Consensus 241 ~-~~~~y~~l~~ 251 (255)
T d2hyda1 241 A-KQGAYEHLYS 251 (255)
T ss_dssp H-TTSHHHHHHT
T ss_pred H-CCCHHHHHHH
T ss_conf 6-8849999999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=405.99 Aligned_cols=223 Identities=26% Similarity=0.403 Sum_probs=207.2
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 189964699807875556788633247-6675189399998479999379998880787689884899889---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1470)
.|+++|++|+|+.+ ..+.|+| ||++++|+++||+|++|||||||+++|+|.++|.+|++ .++|
T Consensus 1 eI~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~ 73 (241)
T d2pmka1 1 DITFRNIRFRYKPD------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEEESSTT------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHH
T ss_pred CEEEEEEEEEECCC------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEEECCCCHH
T ss_conf 92999999990899------9603742489984999999999999989999999973578888899-9999994400246
Q ss_pred ----EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----7689837777888648999723977-89789999999803217997401788520058998774589999999999
Q 000475 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 660 ----~iayv~Q~~wi~~~TIreNIlfg~~-~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARA 734 (1470)
.++||+|+|+++++||+|||.++.+ .+.+++.++++.|.+.++++.+|.|++|.+|++|.+|||||||||+||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARa 153 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153 (241)
T ss_dssp HHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 55352889824465578400035223575543888999999975578887632013443278788669889898754434
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHHCHHHH
Q ss_conf 82499999982767787999999999999976129958999817932153159899994988999407156785200699
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1470)
Q Consensus 735 ly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~~~ 814 (1470)
++++|+|++||||||+||+.++..+++. +..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++++..|
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y 232 (241)
T d2pmka1 154 LVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 232 (241)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHH
T ss_pred HHCCCCHHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 4416513556477655598999999999-999858998999978899998499999998999999889999982998789
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000475 815 VRQMKA 820 (1470)
Q Consensus 815 ~~l~~~ 820 (1470)
.++...
T Consensus 233 ~~l~~~ 238 (241)
T d2pmka1 233 SYLYQL 238 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=397.70 Aligned_cols=224 Identities=29% Similarity=0.412 Sum_probs=207.8
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-------
Q ss_conf 84189964699807875556788633247-6675189399998479999379998880787689884899889-------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g------- 659 (1470)
...|+++|++|+|+.+ ..+.|+| ||+|++|+++||+|++|||||||+++|+|.++|.+|++ .++|
T Consensus 11 ~g~I~~~nvsf~Y~~~------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~ 83 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGR------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYT 83 (253)
T ss_dssp CCCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETTEETTTBC
T ss_pred CEEEEEEEEEEEECCC------CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCCCCCHHH
T ss_conf 3079999889992999------9763533289985999999999999859999999862168884689-87880121110
Q ss_pred ------EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ------768983777788864899972397--789789999999803217997401788520058998774589999999
Q 000475 660 ------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1470)
Q Consensus 660 ------~iayv~Q~~wi~~~TIreNIlfg~--~~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~L 731 (1470)
.++||+|+|+++++|+++|+.+|. ..+++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+|
T Consensus 84 ~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvai 163 (253)
T d3b60a1 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 163 (253)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred HHHHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 66542068799502544786202433205722089999999999981799997355441014348889849999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHHCH
Q ss_conf 99982499999982767787999999999999976129958999817932153159899994988999407156785200
Q 000475 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811 (1470)
Q Consensus 732 ARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~ 811 (1470)
|||++++|+|++||||||+||+.++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++ .+
T Consensus 164 ARal~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~ 241 (253)
T d3b60a1 164 ARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QH 241 (253)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HT
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CC
T ss_conf 999954998899516444589889999999-9987522788999988799998599999998999999889999986-89
Q ss_pred HHHHHHHHH
Q ss_conf 699999998
Q 000475 812 SELVRQMKA 820 (1470)
Q Consensus 812 ~~~~~l~~~ 820 (1470)
+.|.++.+.
T Consensus 242 ~~y~~l~~~ 250 (253)
T d3b60a1 242 GVYAQLHKM 250 (253)
T ss_dssp SSHHHHHHH
T ss_pred CHHHHHHHH
T ss_conf 399999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=391.28 Aligned_cols=224 Identities=25% Similarity=0.342 Sum_probs=202.9
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE------
Q ss_conf 84189964699807875556788633247-66751893999984799993799988807876898848998897------
Q 000475 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (1470)
Q Consensus 588 ~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~------ 660 (1470)
+..|+++|++|+|+.. +..+.|+| ||++++|++++|+|++|||||||+++|+|.++|.+|++ .++|.
T Consensus 9 ~g~I~~~nvsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I-~i~g~~i~~~~ 82 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNR-----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL-LLDGKPLPQYE 82 (251)
T ss_dssp CCCEEEEEEEECCTTS-----TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGBC
T ss_pred CCEEEEEEEEEECCCC-----CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCHHH
T ss_conf 3369999989988999-----99976744389984998999999999849999999861437876899-88998531101
Q ss_pred -------EEEECCCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------689837777888648999723977--89789999999803217997401788520058998774589999999
Q 000475 661 -------KAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1470)
Q Consensus 661 -------iayv~Q~~wi~~~TIreNIlfg~~--~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~L 731 (1470)
++||+|+|+++++||+|||.||.+ .+.++..+..+.+++...++.+|+|.+|.++++|.+|||||||||+|
T Consensus 83 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvai 162 (251)
T d1jj7a_ 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVAL 162 (251)
T ss_dssp HHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEE
T ss_conf 37888776540456500276346554542101302788999999998999998561211136751676689547048998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9998249999998276778799999999999997612--99589998179321531598999949889994071567852
Q 000475 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1470)
Q Consensus 732 ARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~ 809 (1470)
|||++++|+|++||||||+||+++...+++. +..+. .++|+|+|||+++.+..||+|++|++|+|++.|+++|+++
T Consensus 163 ARal~~~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~- 240 (251)
T d1jj7a_ 163 ARALIRKPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME- 240 (251)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-
T ss_pred EECCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-
T ss_conf 6044568707871675765685368999999-99976506989999959799998599999998999999889999985-
Q ss_pred CHHHHHHHHH
Q ss_conf 0069999999
Q 000475 810 QNSELVRQMK 819 (1470)
Q Consensus 810 ~~~~~~~l~~ 819 (1470)
.++.|.++++
T Consensus 241 ~~~~y~~l~~ 250 (251)
T d1jj7a_ 241 KKGCYWAMVQ 250 (251)
T ss_dssp HTSHHHHHHC
T ss_pred CCCHHHHHHC
T ss_conf 9758899962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=399.48 Aligned_cols=219 Identities=23% Similarity=0.332 Sum_probs=190.4
Q ss_pred CCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 87379996898847998940221158851893999998999998899999841777997589996972799997887424
Q 000475 1217 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1296 (1470)
Q Consensus 1217 ~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~ 1296 (1470)
.+.|.|+|+++.+ .|||+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 18982677777665777038699999999999999849199998400134763457999889259999999998703998
Q 000475 1297 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKR 1376 (1470)
Q Consensus 1297 isiIPQdp~LF~gTIR~NLdp~~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ 1376 (1470)
++|+||+|.+|++|||+|+.+...+++.+++++++.+++.+++..+|+++++.+++.|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 8998466789999979999999-9986599378997149133420298999959879894593478611998699999
Q 000475 1377 ILVLDEATASIDTATDNVIQQT-IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1453 (1470)
Q Consensus 1377 ILiLDEaTSslD~~Td~~Iq~~-I~~~f~~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~~lv 1453 (1470)
||+||||||++|+.++..|.+. +....+++|+|+|+||++.+..||||++|++|+++++|+|++|++. ++.|.+..
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 513338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=387.21 Aligned_cols=207 Identities=39% Similarity=0.696 Sum_probs=196.1
Q ss_pred CCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf 8633247-667518939999847999937999888078768988489988976898377778886489997239778978
Q 000475 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1470)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~ 688 (1470)
..|+|+| ||+|++|+++||+||+|||||||+++|+|.+++.+|.+ .++|+++|++|.+|++++||+|||.||..+++.
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 126 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY 126 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-ECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEEEEECCCCCCCCEEECCCCCCCCCCCH
T ss_conf 9767737599985999999998999829999999957974788289-999999998164302676032142033345605
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999998032179974017885200589987745899999999998249999998276778799999999999997612
Q 000475 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1470)
Q Consensus 689 ~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l 768 (1470)
+++++++.|.+..++..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||||+||+.+...+++.++....
T Consensus 127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~ 206 (281)
T d1r0wa_ 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206 (281)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79999999776999984612332355554237799999999999999869635133385544898999999999998862
Q ss_pred CCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHHCHHHHHHHH
Q ss_conf 99589998179321531598999949889994071567852006999999
Q 000475 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1470)
Q Consensus 769 ~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~~~~~l~ 818 (1470)
+++|+|+|||+++.+..||+|++|++|+|++.|+++|++. ...+|....
T Consensus 207 ~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~ 255 (281)
T d1r0wa_ 207 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKL 255 (281)
T ss_dssp TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHH
T ss_conf 8999999925289998599999998999999878999960-594899987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=392.22 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=203.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE---------
Q ss_conf 89964699807875556788633247-66751893999984799993799988807876898848998897---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~--------- 660 (1470)
++++|++|+|+++ .+.|+| ||++++|+++||+|++|||||||+++|+|.++|.+|++ .++|.
T Consensus 2 le~knvsf~Y~~~-------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~ 73 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLEN 73 (242)
T ss_dssp EEEEEEEECSSSS-------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSC
T ss_pred EEEEEEEEECCCC-------CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-EECCEEECCCCHHH
T ss_conf 7999889987999-------841422589985999999999999979999999999609898779-88998844246788
Q ss_pred ----EEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----68983777788864899972397--789789999999803217997401788520058998774589999999999
Q 000475 661 ----KAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 661 ----iayv~Q~~wi~~~TIreNIlfg~--~~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARA 734 (1470)
++||+|+|+++++||+|||.++. ..+++...++++.+.+..++..+|+|.+|.+|++|.+|||||||||+||||
T Consensus 74 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa 153 (242)
T d1mv5a_ 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (242)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHHHEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87436797566545785345430124455542356778999997555420374210152368789879999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHHCHHHH
Q ss_conf 82499999982767787999999999999976129958999817932153159899994988999407156785200699
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1470)
Q Consensus 735 ly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~~~el~~~~~~~~ 814 (1470)
++++|+|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||++ .+..|
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y 231 (242)
T d1mv5a_ 154 FLRNPKILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLY 231 (242)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCHHH
T ss_conf 852998999658865569889999988-7888717998999978799998499999998999999999999986-89699
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000475 815 VRQMKA 820 (1470)
Q Consensus 815 ~~l~~~ 820 (1470)
.++++.
T Consensus 232 ~~l~~~ 237 (242)
T d1mv5a_ 232 AKYVSE 237 (242)
T ss_dssp HHHHHC
T ss_pred HHHHHH
T ss_conf 999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.8e-45 Score=357.96 Aligned_cols=217 Identities=22% Similarity=0.361 Sum_probs=190.5
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999788742418
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~is 1298 (1470)
.|+++|++.+|.. ..+|+||||++++||.+||+||||||||||++++.|+++|++|+|++||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCHH----HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98267777766-5777038699---99999----9999999849199998400134763457999889259999999998
Q 000475 1299 IIPQDPMLFQG-TVRTNLDPLE---QHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARV 1370 (1470)
Q Consensus 1299 iIPQdp~LF~g-TIR~NLdp~~---~~sD~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARA 1370 (1470)
++||+|.+|.. |+++|+.... ..+.+ .+.++++.+++.++ +|.. ...||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-------LNRY----PAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-------TTSC----TTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-------HCCC----HHHCCHHHHHHHHHHHH
T ss_conf 980033534222099999999987399999999999999987598556-------6099----54699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 703998899846678999997999999999865--99378997149133420-298999959879894593478611998
Q 000475 1371 LLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS 1447 (1470)
Q Consensus 1371 LLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s 1447 (1470)
|..+|+||+||||||++|+.+...|++.|++.. .++|+|+|+|++..+.. ||||++|++|++++.|+|+++.++|..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HHH
Q ss_conf 699
Q 000475 1448 SFS 1450 (1470)
Q Consensus 1448 ~f~ 1450 (1470)
.|-
T Consensus 231 ~~~ 233 (239)
T d1v43a3 231 VFV 233 (239)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=358.87 Aligned_cols=216 Identities=23% Similarity=0.328 Sum_probs=192.1
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 79996898847998940221158851893999998999998899999841777997589996972799997887424189
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isi 1299 (1470)
|+++|++++|.. ..+|+|+||++++||.+||+||||||||||++++.|+.+|++|+|.+||.|+++.+. .|+++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8267777766-57770386999---9----99999999998491999984001347634579998892599999999987
Q 000475 1300 IPQDPMLFQG-TVRTNLDPLEQ---H----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL 1371 (1470)
Q Consensus 1300 IPQdp~LF~g-TIR~NLdp~~~---~----sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARAL 1371 (1470)
|||+|.+|.. |+++|+..... . .++.+.++++.+++.++....| ..||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 03998899846678999997999999999865--99378997149133420-2989999598798945934786119986
Q 000475 1372 LKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSS 1448 (1470)
Q Consensus 1372 Lr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s~ 1448 (1470)
+.+|++|+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|++++.|+|++++++|...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred HH
Q ss_conf 99
Q 000475 1449 FS 1450 (1470)
Q Consensus 1449 f~ 1450 (1470)
|-
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-45 Score=358.71 Aligned_cols=214 Identities=23% Similarity=0.407 Sum_probs=191.5
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 79996898847998940221158851893999998999998899999841777997589996972799997887424189
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isi 1299 (1470)
|+++|++.+|.. .+|+||||++++||.+||+||||||||||+++|.|+.+|++|+|++||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8267777766-577703869----99999999999998491999984001347634579998892599999999987039
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL----EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKK 1374 (1470)
Q Consensus 1300 IPQdp~LF~g-TIR~NLdp~----~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~ 1374 (1470)
|||+|.+|.. |+++|+... +.-.++++.++++.+++.++ +|..+ ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-------LDRNP----LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-------TTSCG----GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHH-------HHCCH----HHCCHHHHCCHHHHHHHHCC
T ss_conf 51211117466577888887764055389999999998256555-------75895----54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 98899846678999997999999999865--99378997149133420-29899995987989459347861199869
Q 000475 1375 KRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1449 (1470)
Q Consensus 1375 ~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f 1449 (1470)
|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|++++.|+|++++++|...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-45 Score=361.97 Aligned_cols=221 Identities=22% Similarity=0.337 Sum_probs=193.3
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999---788742
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1295 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LRs 1295 (1470)
.|+++|++.+|+.+...+|+||||++++||.+||+||||||||||+++|.|+.+|++|+|++||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCCCC-C--CCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 41898267777766-577703869-9--999----999999999849199998400134763457999889259999999
Q 000475 1296 RLSIIPQDPMLFQG-TVRTNLDPL-E--QHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCL 1367 (1470)
Q Consensus 1296 ~isiIPQdp~LF~g-TIR~NLdp~-~--~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~L 1367 (1470)
++++|||+|.||+. |+++|+... . ..+ ++.+.++++.+++.++.... . ..||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-------p----~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-------P----RELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-------G----GGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCC-------H----HHCCHHHHHHHHH
T ss_conf 5147730433466665777766556761379999999999998665917666489-------5----4599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998703998899846678999997999999999865--99378997149133420-298999959879894593478611
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLED 1444 (1470)
Q Consensus 1368 ARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~ 1444 (1470)
||||..+|++|++|||||++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHHH
Q ss_conf 998699
Q 000475 1445 NSSSFS 1450 (1470)
Q Consensus 1445 ~~s~f~ 1450 (1470)
|...|-
T Consensus 232 P~~~~~ 237 (242)
T d1oxxk2 232 PVSIQV 237 (242)
T ss_dssp CSSHHH
T ss_pred CCCHHH
T ss_conf 999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=358.05 Aligned_cols=219 Identities=26% Similarity=0.446 Sum_probs=191.8
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 799968988479989--4022115885189399999899999889999984177799758999697279999788---74
Q 000475 1220 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1294 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1294 (1470)
|+++|++.+|..+.. .+|+||||++++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCC-C--CCC----CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 241898267777766-57770386-9--999----999999999984919999840013476345799988925999999
Q 000475 1295 SRLSIIPQDPMLFQG-TVRTNLDP-L--EQH----SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 s~isiIPQdp~LF~g-TIR~NLdp-~--~~~----sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~ 1366 (1470)
+++++|||+|-+|.. |+++|+.. . ... .++.+.+++++++|.+. +|... ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-------~~~~~----~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-------HDSYP----SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-------TSSCB----SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-------HHCCH----HHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035-------54894----349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99987039988998466789999979999999998659--9378997149133420-29899995987989459347861
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~ 1443 (1470)
|||||..+|++|++||||+++|+.+...|++.|++..+ +.|+|+|+|++..+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 199869
Q 000475 1444 DNSSSF 1449 (1470)
Q Consensus 1444 ~~~s~f 1449 (1470)
+|...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.2e-45 Score=357.31 Aligned_cols=219 Identities=21% Similarity=0.327 Sum_probs=190.8
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999788----74
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----LR 1294 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~----LR 1294 (1470)
.|+++|++.+|.. ..+|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.+||.|+....... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 241898267777766-577703869---9999----99999999984919999840013476345799988925999999
Q 000475 1295 SRLSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVC 1366 (1470)
Q Consensus 1295 s~isiIPQdp~LF~g-TIR~NLdp~---~~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~ 1366 (1470)
+++++|||+|.+|+. |+++|+... ...+ ++.+.++++.+++.++. |... ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-------~~~p----~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-------NRKP----RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-------TCCG----GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-------CCCH----HHCCHHHHHHHH
T ss_conf 55120022122231011667633068772999899999999999875996676-------2993----349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998703998899846678999997999999999865--99378997149133420-29899995987989459347861
Q 000475 1367 LARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1443 (1470)
Q Consensus 1367 LARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~ 1443 (1470)
|||||..+|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+++|.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 1998699
Q 000475 1444 DNSSSFS 1450 (1470)
Q Consensus 1444 ~~~s~f~ 1450 (1470)
+|...|-
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.2e-44 Score=350.58 Aligned_cols=221 Identities=26% Similarity=0.392 Sum_probs=191.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---------
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999---------
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--------- 1289 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~--------- 1289 (1470)
.|+++|++++|.. ..+|+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred ----HHHHHCCCEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ----78874241898267777766-57770386----99999----9999999998491999984001347634579998
Q 000475 1290 ----LQDLRSRLSIIPQDPMLFQG-TVRTNLDP----LEQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356 (1470)
Q Consensus 1290 ----l~~LRs~isiIPQdp~LF~g-TIR~NLdp----~~~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1356 (1470)
....|+++++|||+|-+|.. |+++|+.. ....+ ++.+.++++.+++.+..... .. .+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~p----~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK------YP----VH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS------CG----GG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCC------CC----CC
T ss_conf 176799974544899833231411010213656578762999899999999999982995244306------82----20
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 89259999999998703998899846678999997999999999865-99378997149133420-29899995987989
Q 000475 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1357 LS~GQRQll~LARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE 1434 (1470)
|||||+||++|||||..+|++|+|||||+++|+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|+|
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHCCCCHHHH
Q ss_conf 45934786119986999
Q 000475 1435 YDSPRQLLEDNSSSFSK 1451 (1470)
Q Consensus 1435 ~g~p~~Ll~~~~s~f~~ 1451 (1470)
.|+|+++++++...|.+
T Consensus 230 ~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EECHHHHHHSCCSHHHH
T ss_pred ECCHHHHHHCCCCHHHH
T ss_conf 84999998389999999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-43 Score=344.82 Aligned_cols=210 Identities=24% Similarity=0.362 Sum_probs=178.8
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 799968988479989--40221158851893999998999998899999841777997589996972799997887----
Q 000475 1220 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---- 1293 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~L---- 1293 (1470)
|+++|++++|+.+.. .+|+|+||++++||.+||+|+||||||||+++|.|+.+|++|+|++||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHCCC---C---CCCCHH----HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 4241898267777766-57770386---9---999999----99999998491999984001347634579998892599
Q 000475 1294 RSRLSIIPQDPMLFQG-TVRTNLDP---L---EQHSDQ----EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1362 (1470)
Q Consensus 1294 Rs~isiIPQdp~LF~g-TIR~NLdp---~---~~~sD~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQR 1362 (1470)
|+++++|||+|.+|+. |+++|+.. . ...+.+ ++.+.++.++|.+. -.+... .+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~p----~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER------FANHKP----NQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG------GTTCCG----GGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH------HHCCCH----HHCCHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345------534880----23899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHH
Q ss_conf 99999998703998899846678999997999999999865--993789971491334202989999598798945934
Q 000475 1363 QLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPR 1439 (1470)
Q Consensus 1363 Qll~LARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~ 1439 (1470)
||++|||||..+|+||+||||||++|+.+...|++.|++.. .++|+|+|+|+++.+..||||++|++|+|+|.|++.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 9999875652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.1e-42 Score=335.47 Aligned_cols=215 Identities=21% Similarity=0.382 Sum_probs=186.5
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 73799968988479989402211588518939999989999988999998417779975899969727999978874241
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1297 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~i 1297 (1470)
|.|+++|++.+|.. ..+|+|+||++++||.+||+||+|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHH----HCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 898267777766-5777038699---999999999999----84919999840013476345799988925999999999
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLE---QHSDQEIWEVIN----KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLAR 1369 (1470)
Q Consensus 1298 siIPQdp~LF~g-TIR~NLdp~~---~~sD~eI~~aL~----~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LAR 1369 (1470)
+++||++.+|.. |+++|+.... ..+++++++.++ .+++. ...+..+ .+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~----~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-------EKIKDRV----STYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-------GGGGSBG----GGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-------HHHHHHH----HHCCHHHHHHHHHHH
T ss_conf 67500154687866778889899861799899999999999867978-------8885045----337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 8703998899846678999997999999999865-99378997149133420-29899995987989459347861199
Q 000475 1370 VLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNS 1446 (1470)
Q Consensus 1370 ALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~ 1446 (1470)
||+.+|+||+|||||+++|+.+...|++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|+++.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.9e-42 Score=337.00 Aligned_cols=220 Identities=20% Similarity=0.365 Sum_probs=183.0
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CC
Q ss_conf 73799968988479989402211588518939999989999988999998417779975899969727999978874-24
Q 000475 1218 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SR 1296 (1470)
Q Consensus 1218 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-s~ 1296 (1470)
--++++|++.+|.. ..+|+||||++++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+...+.+..+ ..
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1898267777766-577703869--9999999999999849199998400134763457999889259999999998703
Q 000475 1297 LSIIPQDPMLFQG-TVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1297 isiIPQdp~LF~g-TIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr 1373 (1470)
++++||++.+|+. |+++|+... .....+++.+.++..- +....+.+..+.. ..+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~----~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLKQL----GGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTTSB----SSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHCHHHHHHCC----HHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--8741768887585----43389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998899846678999997999999999865-99378997149133420-2989999598798945934786119
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1374 ~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~ 1445 (1470)
+|++|+|||||+++|+.+...|.+.|++.. +++|+|+++|+++.+.. ||||+||++|++++.|+|+++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-42 Score=337.84 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=181.4
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-CC
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999788742-41
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS-RL 1297 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs-~i 1297 (1470)
-++++|++.+|.. ..+|+||||++++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+...+.++.++ .+
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC----------------CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 898267777766-5777038699----------------9999----999999998491999984001347634579998
Q 000475 1298 SIIPQDPMLFQG-TVRTNLDPLE----------------QHSD----QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1356 (1470)
Q Consensus 1298 siIPQdp~LF~g-TIR~NLdp~~----------------~~sD----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1356 (1470)
+++||+|.+|.. |+++|+.... ...+ ++..++++..++.+ ..|..+ .+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-------LYDRKA----GE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-------GTTSBG----GG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-------HCCCCH----HH
T ss_conf 7257764247887423214301333034504566542135328999999999987619630-------205953----56
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 89259999999998703998899846678999997999999999865-99378997149133420-29899995987989
Q 000475 1357 WSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVID-NDLVLVLDEGKVLE 1434 (1470)
Q Consensus 1357 LS~GQRQll~LARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE 1434 (1470)
||||||||++|||||..+|++|+|||||+++|+.+...|++.|++.. +++|||+|+|+++.+.. ||||+||++|++++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHC
Q ss_conf 4593478611
Q 000475 1435 YDSPRQLLED 1444 (1470)
Q Consensus 1435 ~g~p~~Ll~~ 1444 (1470)
.|+|+|+.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.9e-41 Score=329.34 Aligned_cols=215 Identities=24% Similarity=0.411 Sum_probs=179.6
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 79996898847998940221158851893999998999998899999841777997589996972799997887424189
Q 000475 1220 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1299 (1470)
Q Consensus 1220 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isi 1299 (1470)
+++ ++.-+|.. ..+ |+||+++ +|.+||+||||||||||+++|.|+.+|++|+|.+||.|+.+++.. |+++++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCCC-CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8267777766-577703869-9999----999999999849199998400134763457999889259999999998703
Q 000475 1300 IPQDPMLFQG-TVRTNLDPL-EQHS----DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK 1373 (1470)
Q Consensus 1300 IPQdp~LF~g-TIR~NLdp~-~~~s----D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr 1373 (1470)
+||+|.+|+. |+++|+... ...+ ++.+.++++.+++.++.... ...||||||||++|||||+.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~-----------~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHHHHC
T ss_conf 5231443522015576665323367788999999999863837566579-----------44489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9988998466789999979999999998659--9378997149133420-298999959879894593478611998699
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETS--RCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1450 (1470)
Q Consensus 1374 ~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~ 1450 (1470)
+|+||+||||||++|+.+...+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+++++|+|++++++++....
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHH
Q ss_conf 999
Q 000475 1451 KLV 1453 (1470)
Q Consensus 1451 ~lv 1453 (1470)
+++
T Consensus 224 ~fl 226 (240)
T d2onka1 224 EFL 226 (240)
T ss_dssp HHG
T ss_pred HHH
T ss_conf 985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2e-37 Score=298.70 Aligned_cols=201 Identities=24% Similarity=0.310 Sum_probs=169.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 189964699807875556788633247-66751893999984799993799988807876898848998897--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1470)
.|+++|.+++|+. ...|++ ||++++|++++|+||||||||||+++|.|.++|++|++ .++|.
T Consensus 6 ~I~v~nlsk~yg~--------~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I-~i~g~~i~~~~~~ 76 (239)
T d1v43a3 6 EVKLENLTKRFGN--------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPK 76 (239)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGG
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCCC
T ss_conf 4999879999999--------999813067887998999999999829999999975899987879-9916413547700
Q ss_pred ---EEEECCCCCCC-CCCHHHHHHCCCCC---CH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---68983777788-86489997239778---97----899999998032179974017885200589987745899999
Q 000475 661 ---KAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1470)
Q Consensus 661 ---iayv~Q~~wi~-~~TIreNIlfg~~~---~~----~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi 729 (1470)
++||+|++-++ +.|++||+.|+... ++ ++.+++++.+.|++ ........||||||||+
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv 145 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRV 145 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHH
T ss_pred CCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHH
T ss_conf 0158998003353422209999999998739999999999999998759855-----------66099546999998899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHH
Q ss_conf 999998249999998276778799999999999997612--9958999817932153-1598999949889994071567
Q 000475 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1470)
Q Consensus 730 ~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el 806 (1470)
+||||+..+|+|++||||||+||+.+...+.+ .+..+. .++|+|+|||+++... .||+|++|++|+|++.|+.+++
T Consensus 146 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el 224 (239)
T d1v43a3 146 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA-EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224 (239)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99766404998243068866689899989999-99999873198079994899999986999999989999998599999
Q ss_pred HHHCH
Q ss_conf 85200
Q 000475 807 IADQN 811 (1470)
Q Consensus 807 ~~~~~ 811 (1470)
..+..
T Consensus 225 ~~~P~ 229 (239)
T d1v43a3 225 YLRPN 229 (239)
T ss_dssp HHCCS
T ss_pred HHCCC
T ss_conf 86899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8e-38 Score=301.70 Aligned_cols=198 Identities=27% Similarity=0.397 Sum_probs=169.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89964699807875556788633247-6675189399998479999379998880787689884899889----------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g---------- 659 (1470)
|+++|++++|+. ...|+| ||++++|++++++||||||||||+++|.|.++|.+|++ .++|
T Consensus 1 Iev~nv~k~yg~--------~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I-~i~g~~i~~~~~~~ 71 (232)
T d2awna2 1 VQLQNVTKAWGE--------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPPAE 71 (232)
T ss_dssp EEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EESSSCCTTSCGGG
T ss_pred CEEEEEEEEECC--------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 999999999899--------999811177886998999998999829999999965878888889-99999778886444
Q ss_pred -EEEEECCCCCCC-CCCHHHHHHCCCCCC-------HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -768983777788-864899972397789-------78999999980321799740178852005899877458999999
Q 000475 660 -KKAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1470)
Q Consensus 660 -~iayv~Q~~wi~-~~TIreNIlfg~~~~-------~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~ 730 (1470)
.++||+|+|-++ +.|++||+.|+.... +++..++++...|.+..+. ....||||||||++
T Consensus 72 r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRva 140 (232)
T d2awna2 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVA 140 (232)
T ss_dssp TCEEEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------C
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 3222343342026433378897899987599889999999999975788656648-----------96569999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999824999999827677879999999999999761--29958999817932153-15989999498899940715678
Q 000475 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1470)
Q Consensus 731 LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~--l~~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el~ 807 (1470)
||||+..+|++++|||||++||+.+...+.+. +..+ ..++|+|+|||+++... .||+|++|++|+|++.|+.+|++
T Consensus 141 iAraL~~~P~illlDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99997039988997588878898899899999-99998742987999948999999969999999799999980899997
Q ss_pred HH
Q ss_conf 52
Q 000475 808 AD 809 (1470)
Q Consensus 808 ~~ 809 (1470)
+.
T Consensus 220 ~~ 221 (232)
T d2awna2 220 HY 221 (232)
T ss_dssp HS
T ss_pred HC
T ss_conf 38
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.2e-37 Score=298.34 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=168.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 189964699807875556788633247-6675189399998479999379998880787689884899889---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1470)
.|+++|++++|+. ...++| ||++++|++++++||+|||||||+++|.|.++|++|++ .++|
T Consensus 3 ~i~v~nl~k~yg~--------~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I-~~~g~~i~~~~~~ 73 (240)
T d1g2912 3 GVRLVDVWKVFGE--------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73 (240)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGT
T ss_pred CEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEECCCCHH
T ss_conf 1899869999899--------999856066886998999999999809999999964878898989-9999980356644
Q ss_pred --------EEEEECCCCCCC-CCCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf --------768983777788-8648999723977---897----899999998032179974017885200589987745
Q 000475 660 --------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1470)
Q Consensus 660 --------~iayv~Q~~wi~-~~TIreNIlfg~~---~~~----~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSG 723 (1470)
.++||+|+|-++ +.|++||+.|+.. .+. ++.+++++.+.|.+.. ......|||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-----------~~~p~~LSG 142 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-----------NRKPRELSG 142 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-----------TCCGGGSCH
T ss_pred HHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCH
T ss_conf 424532255120022122231011667633068772999899999999999875996676-----------299334999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C-CCEEEEECCCCCHHH-HCCEEEEEECCEEEEE
Q ss_conf 899999999998249999998276778799999999999997612-9-958999817932153-1598999949889994
Q 000475 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1470)
Q Consensus 724 GQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l-~-~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~ 800 (1470)
|||||++||||+..+|++++|||||++||+.+...+.+ .+..+. + +.|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~ 221 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 99999999999826998898258876569899989999-99999863698899995999999996999999989999998
Q ss_pred CCHHHHHHHCH
Q ss_conf 07156785200
Q 000475 801 GKYEDLIADQN 811 (1470)
Q Consensus 801 G~~~el~~~~~ 811 (1470)
|+.+|++.+..
T Consensus 222 G~~~el~~~P~ 232 (240)
T d1g2912 222 GSPDEVYDKPA 232 (240)
T ss_dssp ECHHHHHHSCS
T ss_pred CCHHHHHHCCC
T ss_conf 59999982899
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.9e-37 Score=298.88 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=170.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 189964699807875556788633247-6675189399998479999379998880787689884899889---------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------- 659 (1470)
.|+++|.+++|+.. ....|+| ||++++|+.++|+||+|||||||+++|.|..+|.+|++ .++|
T Consensus 3 ~i~v~nlsk~y~~g------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I-~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-YFDDRLVASNGKL 75 (242)
T ss_dssp CEEEEEEEEEEGGG------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE-EETTEEEEETTEE
T ss_pred EEEEEEEEEEECCC------CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEECCCHH
T ss_conf 89997579998899------9899804078987998999998999809999999975868887459-9999995137311
Q ss_pred -------EEEEECCCCCCC-CCCHHHHHHCCCCC---C----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf -------768983777788-86489997239778---9----78999999980321799740178852005899877458
Q 000475 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1470)
Q Consensus 660 -------~iayv~Q~~wi~-~~TIreNIlfg~~~---~----~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGG 724 (1470)
.++||+|+|-++ +-|++|||.|+... + +++.+++++.+.|.+..+ .....||||
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~p~~LSGG 144 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGA 144 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHH
T ss_pred HCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH-----------CCHHHCCHH
T ss_conf 153120451477304334666657777665567613799999999999986659176664-----------895459999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHH-HHCCEEEEEECCEEEEEC
Q ss_conf 99999999998249999998276778799999999999997612--995899981793215-315989999498899940
Q 000475 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1470)
Q Consensus 725 QkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvilvTH~~~~l-~~~D~I~vl~~G~i~~~G 801 (1470)
||||++||||+..+|+++++||||++||+.+...+.+. +..+. .+.|+|+|||+++.. ..||+|++|++|+|++.|
T Consensus 145 qkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g 223 (242)
T d1oxxk2 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (242)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 98589987577604661454478667998998899899-99998635987999979999999969999999899999986
Q ss_pred CHHHHHHH
Q ss_conf 71567852
Q 000475 802 KYEDLIAD 809 (1470)
Q Consensus 802 ~~~el~~~ 809 (1470)
+.+|+...
T Consensus 224 ~~~el~~~ 231 (242)
T d1oxxk2 224 KPEDLYDN 231 (242)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHHC
T ss_conf 99999868
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-37 Score=300.11 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=179.9
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999788742418
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~is 1298 (1470)
-++++||+.+| +|+||||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+.....+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 9826777-7766577703869--9999999999999849199998400134763457999889259999999998703--
Q 000475 1299 IIPQDPM-LFQGTVRTNLDPL--EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLK-- 1373 (1470)
Q Consensus 1299 iIPQdp~-LF~gTIR~NLdp~--~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr-- 1373 (1470)
+++|+.. .|..++.+|+... .....+.+.++++.+++.+. +.....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767-----------67684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----99889984667899999799999999986-599378997149133420-2989999598798945934786119
Q 000475 1374 -----KKRILVLDEATASIDTATDNVIQQTIREE-TSRCTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1374 -----~~~ILiLDEaTSslD~~Td~~Iq~~I~~~-f~~~TVI~IAHRl~ti~~-~DrVlVL~~G~ivE~g~p~~Ll~~~ 1445 (1470)
+|+||+|||||+++|+.+...|.+.|++. -+++|||+++|+++.+.. ||||++|++|++++.|+|+++++++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2e-37 Score=298.67 Aligned_cols=197 Identities=29% Similarity=0.425 Sum_probs=169.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE---------
Q ss_conf 89964699807875556788633247-66751893999984799993799988807876898848998897---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~--------- 660 (1470)
|+++|.+++|+. ..|+| ||++++|++++++||+|||||||+++|.|.++|++|++ .++|.
T Consensus 2 i~v~nlsk~y~~---------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I-~~~G~~i~~~~~~~ 71 (229)
T d3d31a2 2 IEIESLSRKWKN---------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLSPEK 71 (229)
T ss_dssp EEEEEEEEECSS---------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE-EETTEECTTSCHHH
T ss_pred EEEEEEEEEECC---------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 899989999499---------78843378987998999998999829999999964768887889-99567346521657
Q ss_pred --EEEECCCCCCC-CCCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --68983777788-8648999723977----8978999999980321799740178852005899877458999999999
Q 000475 661 --KAYVPQSSWIQ-TGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1470)
Q Consensus 661 --iayv~Q~~wi~-~~TIreNIlfg~~----~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LAR 733 (1470)
++||+|++-++ +.|++||+.|+.. -++++..++++...+.+.. ......||||||||++|||
T Consensus 72 r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAr 140 (229)
T d3d31a2 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALAR 140 (229)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHH
T ss_pred HCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHH
T ss_conf 40561512111174665778888877640553899999999982565557-----------5895547999840140304
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 98249999998276778799999999999997612--9958999817932153-1598999949889994071567852
Q 000475 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1470)
Q Consensus 734 Aly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el~~~ 809 (1470)
|+..+|+++|||||||+||+.+...+.+ .+..+. .+.|+|+|||+++... .||+|++|++|+|++.|+.+|++++
T Consensus 141 aL~~~P~iLllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 141 ALVTNPKILLLDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 3443677144347876799899999999-99999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-37 Score=296.48 Aligned_cols=201 Identities=24% Similarity=0.335 Sum_probs=167.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE---------
Q ss_conf 89964699807875556788633247-66751893999984799993799988807876898848998897---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~--------- 660 (1470)
|+++|.+++|+.+. .....|+| ||++++|++++|+||+|||||||+++|.|..+|++|++ .++|.
T Consensus 2 i~v~nlsk~y~~~~----~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I-~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 2 IKLSNITKVFHQGT----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV-LVDGQELTTLSESE 76 (240)
T ss_dssp EEEEEEEEEEECSS----CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEE-EETTEEECTTCHHH
T ss_pred EEEEEEEEEECCCC----EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCE-EECCEEEEECCHHH
T ss_conf 79982799969998----14898615057886997999989998988899998758863667732-88676852087555
Q ss_pred -------EEEECCCCCCC-CCCHHHHHHCCC-----CCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf -------68983777788-864899972397-----789--789999999803217997401788520058998774589
Q 000475 661 -------KAYVPQSSWIQ-TGTIRENILFGK-----DMR--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1470)
Q Consensus 661 -------iayv~Q~~wi~-~~TIreNIlfg~-----~~~--~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQ 725 (1470)
++||+|++-++ .-|++|||.|+. +-+ +++..++++.+.|.+.. ......|||||
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~ 145 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQ 145 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHH
T ss_conf 1155416643022522279964999999999984999899999999999976990355-----------48943499999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEECCCCCHHH-HCCEEEEEECCEEEEECC
Q ss_conf 999999999824999999827677879999999999999761-29-958999817932153-159899994988999407
Q 000475 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 726 kqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~-l~-~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~G~ 802 (1470)
|||++||||+..+|+++++||||++||+.+...+++. +..+ .+ +.|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 146 ~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~ 224 (240)
T d3dhwc1 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 9899986401058986874465565898885679999-999986469789998389999998699999997999999879
Q ss_pred HHHHHH
Q ss_conf 156785
Q 000475 803 YEDLIA 808 (1470)
Q Consensus 803 ~~el~~ 808 (1470)
.+|+++
T Consensus 225 ~~ei~~ 230 (240)
T d3dhwc1 225 VSEVFS 230 (240)
T ss_dssp TTTTTC
T ss_pred HHHHHH
T ss_conf 999972
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.7e-36 Score=290.03 Aligned_cols=208 Identities=25% Similarity=0.372 Sum_probs=172.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 189964699807875556788633247-66751893999984799993799988807876898848998897--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1470)
.++++|.+++|+. ...|+| ||++++||+++|+|++|||||||+++|.|..+|++|++ .++|.
T Consensus 2 ~Lev~nl~k~yg~--------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I-~~~G~~i~~~~~~ 72 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDK 72 (258)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCEEECT
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE-EECCEEECCCCCC
T ss_conf 6999978999899--------998815066886997999998999829999999974766789977-9999993367752
Q ss_pred ------------------EEEECCCCCCC-CCCHHHHHHCCC----CCC----HHHHHHHHHHHCCHHHHH-HCCCCCCC
Q ss_conf ------------------68983777788-864899972397----789----789999999803217997-40178852
Q 000475 661 ------------------KAYVPQSSWIQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIE-MWADGDLS 712 (1470)
Q Consensus 661 ------------------iayv~Q~~wi~-~~TIreNIlfg~----~~~----~~~y~~vi~~c~L~~di~-~lp~Gd~t 712 (1470)
++||+|+|-++ +.|+.|||.++. ..+ .++..++++.+.|.+... ..|
T Consensus 73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----- 147 (258)
T d1b0ua_ 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----- 147 (258)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----
T ss_pred CHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----
T ss_conf 000023517679997454489983323141101021365657876299989999999999998299524430682-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HCCEEE
Q ss_conf 0058998774589999999999824999999827677879999999999999761-29958999817932153-159899
Q 000475 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVL 790 (1470)
Q Consensus 713 ~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l~-~~D~I~ 790 (1470)
..||||||||++||||+..+|+++++||||++||+.+...+++. +..+ .+++|+|+|||+++.+. .||+|+
T Consensus 148 ------~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~ 220 (258)
T d1b0ua_ 148 ------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVI 220 (258)
T ss_dssp ------GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEE
T ss_pred ------CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEE
T ss_conf ------20567788898999998439987885245556887888899876-55410368833899489999998699999
Q ss_pred EEECCEEEEECCHHHHHHHCHHHH-HHHH
Q ss_conf 994988999407156785200699-9999
Q 000475 791 VMKDGKIEQSGKYEDLIADQNSEL-VRQM 818 (1470)
Q Consensus 791 vl~~G~i~~~G~~~el~~~~~~~~-~~l~ 818 (1470)
+|.+|+|++.|+.+|++.+...++ .+++
T Consensus 221 vm~~G~iv~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 221 FLHQGKIEEEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEECCEEEEECCHHHHHHCCCCHHHHHHH
T ss_conf 99799999984999998389999999988
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-36 Score=293.10 Aligned_cols=197 Identities=27% Similarity=0.368 Sum_probs=159.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE---------
Q ss_conf 89964699807875556788633247-66751893999984799993799988807876898848998897---------
Q 000475 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1470)
Q Consensus 591 i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~--------- 660 (1470)
|+++|.+++|+..+ .....|+| ||++++|+.++|+||+|||||||+++|.|..+|++|++ .++|.
T Consensus 2 I~i~nlsk~y~~~~----~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I-~~~g~~i~~~~~~~ 76 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDE 76 (230)
T ss_dssp EEEEEEEEEEEETT----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHH
T ss_pred EEEEEEEEEECCCC----EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 89990799948998----20898713377884997999988999982165575068877776626-99999857688555
Q ss_pred --------EEEECCCCCCC-CCCHHHHHHCCCC------CC-HHHHHHHHH---HHCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf --------68983777788-8648999723977------89-789999999---80321799740178852005899877
Q 000475 661 --------KAYVPQSSWIQ-TGTIRENILFGKD------MR-QSFYEEVLE---GCALNQDIEMWADGDLSVVGERGINL 721 (1470)
Q Consensus 661 --------iayv~Q~~wi~-~~TIreNIlfg~~------~~-~~~y~~vi~---~c~L~~di~~lp~Gd~t~iGe~G~~L 721 (1470)
++||+|+|-++ +-|++||+.++.. ++ +++.+++.+ ...|.+. .....-..|
T Consensus 77 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~L 146 (230)
T d1l2ta_ 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQL 146 (230)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGS
T ss_pred CCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH----------HHCCCHHHC
T ss_conf 1231255577880412417686688877578887224789999999999998876242345----------534880238
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHCCEEEEEECCEEEE
Q ss_conf 45899999999998249999998276778799999999999997612--9958999817932153159899994988999
Q 000475 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1470)
Q Consensus 722 SGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~ 799 (1470)
||||||||+||||+..+|+++++|||||+||+.++..+++. +..+. .++|+|+|||+++....||+|++|++|+|++
T Consensus 147 SGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (230)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEE
T ss_conf 99999999987565227888994687654698999999999-99999843999999878889998699899998999999
Q ss_pred ECCH
Q ss_conf 4071
Q 000475 800 SGKY 803 (1470)
Q Consensus 800 ~G~~ 803 (1470)
.|+.
T Consensus 226 ~g~~ 229 (230)
T d1l2ta_ 226 EEKL 229 (230)
T ss_dssp EEEC
T ss_pred ECCC
T ss_conf 5257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-35 Score=283.23 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=163.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 189964699807875556788633247-66751893999984799993799988807876898848998897--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1470)
-++++|.+.+|+. ...|+| ||++++|++++++||||||||||+++|.|.++|.+|++ .++|.
T Consensus 4 iL~v~nlsk~yg~--------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEEEEETT--------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHH
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCHHHH
T ss_conf 6999778999799--------688712179988997999999999849999999977976887379-9999966405699
Q ss_pred ------EEEECCCCCC-CCCCHHHHHHCCCCC-----------------CHHHHHHH---HHHHCCHHHHHHCCCCCCCC
Q ss_conf ------6898377778-886489997239778-----------------97899999---99803217997401788520
Q 000475 661 ------KAYVPQSSWI-QTGTIRENILFGKDM-----------------RQSFYEEV---LEGCALNQDIEMWADGDLSV 713 (1470)
Q Consensus 661 ------iayv~Q~~wi-~~~TIreNIlfg~~~-----------------~~~~y~~v---i~~c~L~~di~~lp~Gd~t~ 713 (1470)
++|++|+|-+ ++.|++||+.+|... +++..+++ ++...+ ...
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~ 143 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-----------SHL 143 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-----------GGG
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-----------CHH
T ss_conf 999833872577642478874232143013330345045665421353289999999999876196-----------302
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-HHCCEEEE
Q ss_conf 058998774589999999999824999999827677879999999999999761-2995899981793215-31598999
Q 000475 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLV 791 (1470)
Q Consensus 714 iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l-~~~D~I~v 791 (1470)
......+||||||||++||||+..+|++++|||||++||+.+...+++. +..+ .+++|+|++||+++.+ ..||+|++
T Consensus 144 ~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~v 222 (254)
T d1g6ha_ 144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYV 222 (254)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEE
T ss_conf 0595356991888899999999759272324397656999999999999-999997899899994769999986999999
Q ss_pred EECCEEEEECCHHHHHH
Q ss_conf 94988999407156785
Q 000475 792 MKDGKIEQSGKYEDLIA 808 (1470)
Q Consensus 792 l~~G~i~~~G~~~el~~ 808 (1470)
|++|+|+..|+.+|+.+
T Consensus 223 m~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 223 MFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp EETTEEEEEEESHHHHH
T ss_pred EECCEEEEEECHHHHHH
T ss_conf 96998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.5e-35 Score=282.58 Aligned_cols=205 Identities=23% Similarity=0.350 Sum_probs=166.9
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE-----
Q ss_conf 984189964699807875556788633247-66751893999984799993799988807876898848998897-----
Q 000475 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1470)
Q Consensus 587 ~~~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~----- 660 (1470)
++..++++|.+++|.. ...|+| ||++++|++++++||||||||||+++|.|.++|.+|++ .++|.
T Consensus 3 sd~~Lev~~l~k~yg~--------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I-~~~G~~i~~~ 73 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA--------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDITNK 73 (240)
T ss_dssp CSEEEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTC
T ss_pred CCEEEEEEEEEEEECC--------EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCCCCCCC
T ss_conf 5607999618999899--------888830257888997999999999859999999967888880389-8424434466
Q ss_pred ---------EEEECCCCCCC-CCCHHHHHHCCCCC--CHHHHHHHH-HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---------68983777788-86489997239778--978999999-980321799740178852005899877458999
Q 000475 661 ---------KAYVPQSSWIQ-TGTIRENILFGKDM--RQSFYEEVL-EGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 661 ---------iayv~Q~~wi~-~~TIreNIlfg~~~--~~~~y~~vi-~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkq 727 (1470)
++|+||++-++ +-|++||+.++... +.+..++.+ +...+...++ ........+|||||||
T Consensus 74 ~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~LSGG~~Q 146 (240)
T d1ji0a_ 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQ 146 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHH
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH-------HHHHCCHHHCCHHHHH
T ss_conf 088888742355676554577636999999888732788899999999998741768-------8875854338999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHH
Q ss_conf 9999999824999999827677879999999999999761-2995899981793215-3159899994988999407156
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Ri~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l-~~~D~I~vl~~G~i~~~G~~~e 805 (1470)
|+++|||+.++|++++|||||++||+.+...+++ .+..+ .+++|+|++||+++.+ ..||+|++|++|+|+..|+.+|
T Consensus 147 rv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e 225 (240)
T d1ji0a_ 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999982998740039886799999999999-999999689989999588999999699999998999999848999
Q ss_pred HHH
Q ss_conf 785
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+.+
T Consensus 226 l~~ 228 (240)
T d1ji0a_ 226 LLD 228 (240)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 842
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.3e-35 Score=278.63 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=166.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE-------
Q ss_conf 4189964699807875556788633247-66751893999984799993799988807876898848998897-------
Q 000475 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1470)
Q Consensus 589 ~~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~------- 660 (1470)
.+|+++|.+.+|.. ...|+| ||++++|++++++||+|||||||+++|.|.++|.+|++ .++|.
T Consensus 1 gaI~v~nl~k~yg~--------~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i-~i~G~~i~~~~~ 71 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPH 71 (238)
T ss_dssp CCEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTCHH
T ss_pred CCEEEEEEEEEECC--------EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCHH
T ss_conf 97899958999999--------999806256884897999999999999999999966988788879-998672446839
Q ss_pred -----EEEECCCCCC-CCCCHHHHHHCCCC---CCHHHH----HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -----6898377778-88648999723977---897899----9999980321799740178852005899877458999
Q 000475 661 -----KAYVPQSSWI-QTGTIRENILFGKD---MRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1470)
Q Consensus 661 -----iayv~Q~~wi-~~~TIreNIlfg~~---~~~~~y----~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkq 727 (1470)
++|+||++.+ ++-|++||+.|... .+.++. +++++.+.|. ....++-.+|||||||
T Consensus 72 ~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lSgG~~q 140 (238)
T d1vpla_ 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVR 140 (238)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHCCHHHHH
T ss_conf 88721867500154687866778889899861799899999999999867978-----------8885045337998989
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHH
Q ss_conf 9999999824999999827677879999999999999761-29958999817932153-159899994988999407156
Q 000475 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1470)
Q Consensus 728 Ri~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~e 805 (1470)
|+++|||+.++|++++|||||++||+.....++ +.+..+ ..++|+|++||+++.+. .||+|++|++|+|+..|++++
T Consensus 141 rv~iA~al~~~p~illLDEPt~gLD~~~~~~i~-~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e 219 (238)
T d1vpla_ 141 KLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 219 (238)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 999999986599988733798897989999999-9999999659989999598999999699999998999999928999
Q ss_pred HHH
Q ss_conf 785
Q 000475 806 LIA 808 (1470)
Q Consensus 806 l~~ 808 (1470)
+.+
T Consensus 220 l~~ 222 (238)
T d1vpla_ 220 LKE 222 (238)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 986
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.2e-35 Score=280.89 Aligned_cols=190 Identities=24% Similarity=0.392 Sum_probs=160.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 37999689884799894022115885189399999899999889999984177799758999697279999788742418
Q 000475 1219 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1298 (1470)
Q Consensus 1219 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~is 1298 (1470)
.|+++|++++|+ . ++|+|+||++++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.. .|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939--9-28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98267777766-57770386----9-999999999999984919999840013476345799988925999999999870
Q 000475 1299 IIPQDPMLFQG-TVRTNLDP----L-EQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLL 1372 (1470)
Q Consensus 1299 iIPQdp~LF~g-TIR~NLdp----~-~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALL 1372 (1470)
++||++.++.. |+++|+.. + ...+++++.++++..++.+ ++..+ .+||+|||||+++|||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------30126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC
Q ss_conf 399889984667899999799999999986599378997149133420298999959
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDE 1429 (1470)
Q Consensus 1373 r~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrVlVL~~ 1429 (1470)
.+|++++|||||+++|+++...+.+.|.+..++.++++|+|+- .+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916-2544161234010
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.8e-35 Score=280.48 Aligned_cols=183 Identities=28% Similarity=0.438 Sum_probs=151.2
Q ss_pred C-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-----------EEEEECCCCCCC-CCCHHHHHHCC
Q ss_conf 7-6675189399998479999379998880787689884899889-----------768983777788-86489997239
Q 000475 616 D-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQ-TGTIRENILFG 682 (1470)
Q Consensus 616 ~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g-----------~iayv~Q~~wi~-~~TIreNIlfg 682 (1470)
| +|+++ ++.++++||||||||||+++|.|.++|.+|++ .++| .++||+|++-++ +-|++|||.||
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~ 94 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV-RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHH
T ss_conf 9999749-97999997999809999999973999896289-999999886998992852252314435220155766653
Q ss_pred CC-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 77-897----8999999980321799740178852005899877458999999999982499999982767787999999
Q 000475 683 KD-MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1470)
Q Consensus 683 ~~-~~~----~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~ 757 (1470)
.. +++ ++.+++++.+.|.+ ........||||||||++||||+..+|++++||||||+||+++..
T Consensus 95 l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 95 LRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 233677889999999998638375-----------665794448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHC--CCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHHHCHH
Q ss_conf 99999997612--9958999817932153-1598999949889994071567852006
Q 000475 758 HLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNS 812 (1470)
Q Consensus 758 ~i~~~~i~~~l--~~kTvilvTH~~~~l~-~~D~I~vl~~G~i~~~G~~~el~~~~~~ 812 (1470)
.+.+. +..+. .+.|+|+|||+++.+. .||+|++|++|+|++.|+.+|+++..+.
T Consensus 164 ~i~~~-i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~ 220 (240)
T d2onka1 164 VLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220 (240)
T ss_dssp HHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCS
T ss_pred HHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCH
T ss_conf 99999-9999874397699981899999996999999989999999069998329988
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.5e-31 Score=249.41 Aligned_cols=193 Identities=23% Similarity=0.397 Sum_probs=159.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 189964699807875556788633247-66751893999984799993799988807876898848998897--------
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~-------- 660 (1470)
.++++|++. ...|++ ||+|++||+++|+|+||||||||+++|.|.. +.+|++ .++|.
T Consensus 3 il~~~dv~~------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I-~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 3 VMQLQDVAE------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI-QFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEECC------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEE-EESSSBGGGSCHH
T ss_pred EEEEECCCC------------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEE-EECCEECCCCCHH
T ss_conf 999987415------------71555888899489899999899980999999994887-995599-9999999869989
Q ss_pred -----EEEECCCCC-CCCCCHHHHHHCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----689837777-8886489997239778--97899999998032179974017885200589987745899999999
Q 000475 661 -----KAYVPQSSW-IQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1470)
Q Consensus 661 -----iayv~Q~~w-i~~~TIreNIlfg~~~--~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LA 732 (1470)
.+|++|+.- .+..++.+++.++... ..++.+++++.+.+.+ .++.+..+||||||||+++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHH
T ss_pred HHHHHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHH
T ss_conf 9986402451213577442098876410014668999999998659876-----------76768445699889999999
Q ss_pred HHHCC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCH
Q ss_conf 99824-------999999827677879999999999999761-2995899981793215-31598999949889994071
Q 000475 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1470)
Q Consensus 733 RAly~-------~~~i~lLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvilvTH~~~~l-~~~D~I~vl~~G~i~~~G~~ 803 (1470)
||+++ +|++++||||+++||+.....+. +.+..+ .+++|+|++||+++.+ ..||+|++|++|++++.|+.
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 99985171338998899971877778989999999-99999986799999996779999997999999979989998899
Q ss_pred HHHHH
Q ss_conf 56785
Q 000475 804 EDLIA 808 (1470)
Q Consensus 804 ~el~~ 808 (1470)
+|++.
T Consensus 217 ~ev~~ 221 (231)
T d1l7vc_ 217 EEVLT 221 (231)
T ss_dssp HHHSC
T ss_pred HHHHC
T ss_conf 99818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=2.2e-29 Score=237.19 Aligned_cols=180 Identities=23% Similarity=0.393 Sum_probs=141.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------E
Q ss_conf 189964699807875556788633247-6675189399998479999379998880787689884899889--------7
Q 000475 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1470)
Q Consensus 590 ~i~~~~~~f~w~~~~~~~~~~~~~L~~-nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g--------~ 660 (1470)
.++++|.+++|+ .+.|+| ||++++|++++|+||||||||||+++|+|.++|.+|++ .++| .
T Consensus 2 ~lev~~ls~~y~---------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I-~~~g~~i~~~~~~ 71 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKGK 71 (200)
T ss_dssp EEEEEEEEEESS---------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGGGGG
T ss_pred EEEEEEEEEEEC---------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEHHHHCCC
T ss_conf 599998999939---------928842088985998999999999719999999966205677889-9998962673670
Q ss_pred EEEECCCCCCC-CCCHHHHHHC-----CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 68983777788-8648999723-----97789789999999803217997401788520058998774589999999999
Q 000475 661 KAYVPQSSWIQ-TGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1470)
Q Consensus 661 iayv~Q~~wi~-~~TIreNIlf-----g~~~~~~~y~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARA 734 (1470)
++|+||++.++ +-|++||+.+ |.+.++++..+.++...+.+ +.++-.+||||||||+++|||
T Consensus 72 i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 72 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLAST 139 (200)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHH
T ss_conf 89995013578882899999999975488637999999998748856------------301268689718888999998
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHCCEEEEEEC
Q ss_conf 824999999827677879999999999999761299-589998179321531598999949
Q 000475 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAADLVLVMKD 794 (1470)
Q Consensus 735 ly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~-kTvilvTH~~~~l~~~D~I~vl~~ 794 (1470)
++++|++++||||+++||+.+...+++. +....++ .++|+.+|+ .+..||.+.+|..
T Consensus 140 l~~~~~llllDEPt~gLD~~~~~~i~~~-l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSRE--ELSYCDVNENLHK 197 (200)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHH-HHHHHHHHSEEEEEESS--CCTTSSEEEEGGG
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEEC--HHHHCCHHHHEEE
T ss_conf 8649989998686201699999999999-99998679999999916--2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=4.2e-21 Score=173.90 Aligned_cols=303 Identities=11% Similarity=0.088 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999864999973068999999999999999999999999999999999
Q 000475 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1470)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1470)
..+.+|+.+++..++.++..++....|++++.+++..-...+ ... .+.++..+++..++..++.....+...+.+.+
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSV-LLWMPLVVIGLMILRGITSYISSYCISWVSGK 86 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999998744687--789-99999999999997645335466544343100
Q ss_pred HHHHHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999860112589---9989999999973999999999999-9999999999989999888556899999999
Q 000475 349 VRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1470)
Q Consensus 349 ir~~L~~~iy~K~l~ls~~~---~~~G~ivnlms~D~~~i~~~~~~~~-~~~~~plqi~i~l~~L~~~lG~~a~l~gl~~ 424 (1470)
+...+...+|+|.++.+... +++|++++.++.|++.+.++..... ......+.++.++++++ .+.|..+++.++.
T Consensus 87 ~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~li~l~~ 165 (319)
T d3b60a2 87 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMF-YYSWQLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHH
T ss_conf 011000477776501011110233322111112121210000111112001123344566888887-6520021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999980049999855199999999999999999999999998999999
Q 000475 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1470)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~ 504 (1470)
+++...+.....++..+..++.++..++..+...|.++|++++|.+++|+.+.++.++..++..+...+.....+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999899--9999999999823987789999999999999999999999999999999999999998624489
Q 000475 505 FWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1470)
Q Consensus 505 ~~~~p~~--v~~~tf~~~~~~~~~L~~~~vf~~la~~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 575 (1470)
......+ +.+..++.+....+.+++|.+++++.+...+..|+..+++.++.+.++.+|.+|+.++|+.|++
T Consensus 246 ~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.1e-20 Score=170.65 Aligned_cols=305 Identities=17% Similarity=0.185 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999986499997306----899999999999999999999999999999
Q 000475 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY----HYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1470)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~----~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1470)
..+.||+.++...++.++..++....|++++.++|.+.+.+..... ...+.++.++++..++..++.....+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999986011258---999899999999739999999999-99999999999998999988855689999
Q 000475 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1470)
Q Consensus 345 ~g~rir~~L~~~iy~K~l~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~~~~plqi~i~l~~L~~~lG~~a~l~ 420 (1470)
.+.+++..++..+|+|.++++.. .+++|+++|.++.|++.+.++... +...+...+.+++++++++. +.|..++.
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li 166 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF-LDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000-01468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999998004999985519999999999999999999999999899
Q 000475 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1470)
Q Consensus 421 gl~~~~i~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1470)
.++.+++.......+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999989--9999999999982398778999999999999999999999999999999999999999862448
Q 000475 501 IAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1470)
Q Consensus 501 ~~~~~~~~p~--~v~~~tf~~~~~~~~~L~~~~vf~~la~~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 574 (1470)
.......... .+.+..++.+....+.++.|.+++++.++..+..|+..+++.+..+.++.+|++||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=7.3e-20 Score=164.38 Aligned_cols=308 Identities=12% Similarity=0.067 Sum_probs=235.8
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998401268999999999999997435678887401234-4552---20233578756578999999999999999
Q 000475 880 YSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIA 955 (1470)
Q Consensus 880 y~~y~~~~~g~~~~~~i~~~~~~~~~~~i~~~~wl~~~~~~~~-~~~~---~~~i~~y~~l~~~~~~~~~~~~~~~~~~~ 955 (1470)
++.|++..++ .+.+.+++.++..+.....++.++...|+.. ..+. ..+...++++.++..++.+.+.+.....+
T Consensus 7 l~~~~~~~k~--~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (319)
T d3b60a2 7 LWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVS 84 (319)
T ss_dssp HHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999--99999999999999999999999999998744687789999999999999976453354665443431
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999834873332346713489998400111011068999999999999999999999986799999999
Q 000475 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1470)
Q Consensus 956 ~~~s~~l~~~l~~~il~ap~~ffd~tp~GrIlnR~s~D~~~id~~i~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~i~ip 1035 (1470)
.+...+++.++++++++.|++||++.++|++++|+++|++.+...+...+...+...+.+++.++++...+|.+.++.+.
T Consensus 85 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~ 164 (319)
T d3b60a2 85 GKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVV 164 (319)
T ss_dssp HHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 00011000477776501011110233322111112121210000111112001123344566888887652002102566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999885455656778999999999999998351010487899855014898860308899999999999987779
Q 000475 1036 ILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVT 1115 (1470)
Q Consensus 1036 ~~~l~~~~~~~~~~~~~~~l~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~ 1115 (1470)
..++..... .++.+..+...+......+...++..|.+.|+.+||+|+.|+.+.+++.+..++..+..
T Consensus 165 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 232 (319)
T d3b60a2 165 LAPIVSIAI------------RVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 232 (319)
T ss_dssp HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 899999988------------76666877878988764456778877762487235311101024566666531356778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999675799999999999999999999-976127876988999999999999999999999999999965179999997
Q 000475 1116 FHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF 1194 (1470)
Q Consensus 1116 ~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~~sveRi~~~ 1194 (1470)
........+......++..+....+..+ ......|.+++|.......|...+..++..+...+.++.+.+.|.+|+.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~el 312 (319)
T d3b60a2 233 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 312 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88887777406401000000237999999999980997899999999999999999999999999999999999999999
Q ss_pred HCCCCCC
Q ss_conf 3399988
Q 000475 1195 TNIPSEA 1201 (1470)
Q Consensus 1195 ~~~~~E~ 1201 (1470)
.+.|+|+
T Consensus 313 ld~~~E~ 319 (319)
T d3b60a2 313 LDSEQEK 319 (319)
T ss_dssp HHSCCSC
T ss_pred HCCCCCC
T ss_conf 6699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=9.4e-20 Score=163.56 Aligned_cols=309 Identities=12% Similarity=0.095 Sum_probs=230.5
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCC---CCH-H----HHHHHHHHHHHHHHHH
Q ss_conf 88999999840126899999999999999743567888740123---44552---202-3----3578756578999999
Q 000475 878 TVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKVSR---EQL-I----GVFIFLSGGSSFFILG 946 (1470)
Q Consensus 878 ~~y~~y~~~~~g~~~~~~i~~~~~~~~~~~i~~~~wl~~~~~~~---~~~~~---~~~-i----~~y~~l~~~~~~~~~~ 946 (1470)
+.++.|++..++. +...+++.++..++....++.++...|.- ..... ... + ..+.++.+...++.+.
T Consensus 3 Krl~~~~k~~k~~--~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKYR--IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHHH--HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999--99999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999834873332346713489998400111011068999999999999999999999986
Q 000475 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026 (1470)
Q Consensus 947 ~~~~~~~~~~~~s~~l~~~l~~~il~ap~~ffd~tp~GrIlnR~s~D~~~id~~i~~~~~~~~~~~~~~i~~~~i~~~~~ 1026 (1470)
+.+.....+.+...+++.++++++++.|++|||+.++|++++|+++|+..++..+...+...+...+.++..++++...+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 79999999999999999885455656778999999999999998351010487899855014898860308899999999
Q 000475 1027 WQVFPLFLVILGISIWYQVVNTARCHYLLQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1106 (1470)
Q Consensus 1027 ~~~~~i~ip~~~l~~~~~~~~~~~~~~~l~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1106 (1470)
|.+.++.++..++..... .++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+
T Consensus 161 ~~l~li~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~ 228 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTV------------YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (323)
T ss_dssp TTTHHHHTTHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHC
T ss_conf 468889999887777777------------64123332026778989999997878875597023467641110023302
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877799999675799999999999999999999-976127876988999999999999999999999999999965
Q 000475 1107 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII-LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1185 (1470)
Q Consensus 1107 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~gl~lsy~l~l~~~~~~~i~~~~~le~~~ 1185 (1470)
..++..+..........+......++..+.......+ ......|.+++|......++...+...+..+...+.++...+
T Consensus 229 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 308 (323)
T d2hyda2 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23111101567765200001111101205589999999999984998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 179999997339998
Q 000475 1186 ISVERILQFTNIPSE 1200 (1470)
Q Consensus 1186 ~sveRi~~~~~~~~E 1200 (1470)
.|.||+.++++.++|
T Consensus 309 ~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 309 ASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999779998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.55 E-value=3.7e-16 Score=136.04 Aligned_cols=171 Identities=9% Similarity=0.047 Sum_probs=118.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999899999889999984177799758999697279999788742418982677777665777038699999999999
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1328 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~eI~~ 1328 (1470)
||+|+||+|||||||++.+.+.++|..|.+.+++.+....+...........++.+.++..+...+.......
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYG------- 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEE-------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554430230-------
Q ss_pred HHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 999849199998400134763457999889259999999998703998899846678999--997999999999865993
Q 000475 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASID--TATDNVIQQTIREETSRC 1406 (1470)
Q Consensus 1329 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILiLDEaTSslD--~~Td~~Iq~~I~~~f~~~ 1406 (1470)
.+... ..+|+|++|+.++++++.++|+++++||++...+ .+....+.+.++. .++
T Consensus 75 -----------------~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 75 -----------------VNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp -----------------ECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred -----------------CCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCC
T ss_conf -----------------37625----6653201378999999740997423027773100457999999987505--797
Q ss_pred EEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 789971491334202989999598798945934786119986999999
Q 000475 1407 TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVA 1454 (1470)
Q Consensus 1407 TVI~IAHRl~ti~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~f~~lv~ 1454 (1470)
|+|.++|+......||++..+++|++++-+.. |.+..+..++.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 89999744778986365998719999998996-----47889999999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=1.7e-11 Score=100.47 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHCCEEEEE
Q ss_conf 8892599999999987----03998899846678999997999999999865-993789971491334202989999
Q 000475 1356 NWSVGQRQLVCLARVL----LKKKRILVLDEATASIDTATDNVIQQTIREET-SRCTVITVAHRIPTVIDNDLVLVL 1427 (1470)
Q Consensus 1356 nLS~GQRQll~LARAL----Lr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrVlVL 1427 (1470)
.+|||||.+++||-.+ ..++++++||||++++|+.+...+-+.|++.. .++-+|+|||++.+...+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.22 E-value=4.9e-13 Score=112.17 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=97.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEE--EEECC-----------CCCCCCCCHHHHHHCCCCCCHHHH
Q ss_conf 39999847999937999888078768988489988976--89837-----------777888648999723977897899
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AYVPQ-----------SSWIQTGTIRENILFGKDMRQSFY 690 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~i--ayv~Q-----------~~wi~~~TIreNIlfg~~~~~~~y 690 (1470)
.+++|+||+|||||||++.++|++++..|.+ ...+.. .+-.| .+.....+..++..+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGF-WTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS------- 72 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEE-EEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9899998999389999999981488886469-98771328888765311233667778875411345544302-------
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--
Q ss_conf 999998032179974017885200589987745899999999998249999998276778799999999999997612--
Q 000475 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-- 768 (1470)
Q Consensus 691 ~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l-- 768 (1470)
..+......+++|+++|.+++++..++|+++++|||....+.. ... ...+...+
T Consensus 73 ---------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~--~~~-~~~l~~~l~~ 128 (178)
T d1ye8a1 73 ---------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS--KKF-RDLVRQIMHD 128 (178)
T ss_dssp ---------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGC--HHH-HHHHHHHHTC
T ss_pred ---------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH--HHH-HHHHHHHHCC
T ss_conf ---------------------3037625665320137899999974099742302777310045--799-9999987505
Q ss_pred CCCEEEEECCCCCHHHHCCEEEEEECCEEEEECC
Q ss_conf 9958999817932153159899994988999407
Q 000475 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1470)
Q Consensus 769 ~~kTvilvTH~~~~l~~~D~I~vl~~G~i~~~G~ 802 (1470)
.++|+|+++|+.+..+.+|++..+++|++...++
T Consensus 129 ~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 129 PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 7978999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=4.3e-09 Score=82.01 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEE--EEC
Q ss_conf 8892599999999987----0399889984667899999799999999986599378997149133420298999--959
Q 000475 1356 NWSVGQRQLVCLARVL----LKKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLV--LDE 1429 (1470)
Q Consensus 1356 nLS~GQRQll~LARAL----Lr~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrVlV--L~~ 1429 (1470)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000475 1430 G 1430 (1470)
Q Consensus 1430 G 1430 (1470)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=2.5e-07 Score=68.56 Aligned_cols=77 Identities=27% Similarity=0.319 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEE--E
Q ss_conf 87745899999999998----24999999827677879999999999999761299589998179321531598999--9
Q 000475 719 INLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV--M 792 (1470)
Q Consensus 719 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l~~~D~I~v--l 792 (1470)
..+|+|||+...++..+ ...+.++++|||-++|++...+.+.+ .+....++.-+|++||.+.++..+|+++. |
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECCE
Q ss_conf 4988
Q 000475 793 KDGK 796 (1470)
Q Consensus 793 ~~G~ 796 (1470)
++|.
T Consensus 297 ~~g~ 300 (308)
T d1e69a_ 297 VNGV 300 (308)
T ss_dssp SSSC
T ss_pred ECCE
T ss_conf 6999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=1.7e-06 Score=62.15 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCEEEEE
Q ss_conf 87745899999999998----249999998276778799999999999997612-995899981793215315989999
Q 000475 719 INLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1470)
Q Consensus 719 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l-~~kTvilvTH~~~~l~~~D~I~vl 792 (1470)
..||||||.+++||-.+ +.++++++||||.++||+.....+.+ .+.... .+.-+|++||+++++..||+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 33223047999999999995479997799968877789999999999-9999728998899995878999736617999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.11 E-value=0.0014 Score=39.95 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=71.2
Q ss_pred CCEEEECCCEEEEECCCCCCHHHHHHHHHC--CCCCCCCCEEEECCEEEEECCCCCCCC-CCHHHHHHCCCCCCHHHHHH
Q ss_conf 766751893999984799993799988807--876898848998897689837777888-64899972397789789999
Q 000475 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEE 692 (1470)
Q Consensus 616 ~nl~i~~G~~vaivG~~GsGKStLl~~ilG--e~~~~~G~vi~~~g~iayv~Q~~wi~~-~TIreNIlfg~~~~~~~y~~ 692 (1470)
|++.+.+ +.+.|.|||.+||||+++.+.= .|.. .|. .+...-+-++.-..|+. --..|++.-|..
T Consensus 29 Ndi~~~~-~~~iiTGpN~~GKSt~lk~i~l~~ilAq-~G~--~vpA~~~~i~~~d~I~~~~~~~d~~~~~~S-------- 96 (224)
T d1ewqa2 29 NDLEMAH-ELVLITGPNMAGKSTFLRQTALIALLAQ-VGS--FVPAEEAHLPLFDGIYTRIGASDDLAGGKS-------- 96 (224)
T ss_dssp EEEEESS-CEEEEESCSSSSHHHHHHHHHHHHHHHT-TTC--CBSSSEEEECCCSEEEEECCC------CCS--------
T ss_pred CEEEECC-CEEEEECCCCCCCCHHHHHHHHHHHHHH-CCC--EEECCCEEEEECCEEEEEECCCCCCCCCCC--------
T ss_conf 5588478-6799978873453234556589999985-250--461375199401169999877760237830--------
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCC
Q ss_conf 9998032179974017885200589987745899999999998249999998276778799999999999997612-995
Q 000475 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQK 771 (1470)
Q Consensus 693 vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l-~~k 771 (1470)
.=..+-+|++-.---..+..++|+||+.++=|+..+..+....+..+. .+.
T Consensus 97 ----------------------------tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~ 148 (224)
T d1ewqa2 97 ----------------------------TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRA 148 (224)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------------------------HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCC
T ss_conf ----------------------------7898678898775028977278554545686233200258888888862376
Q ss_pred EEEEECCCCCHHH
Q ss_conf 8999817932153
Q 000475 772 TVLYTTHQLEFLD 784 (1470)
Q Consensus 772 TvilvTH~~~~l~ 784 (1470)
+++++||..+...
T Consensus 149 ~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 149 YTLFATHYFELTA 161 (224)
T ss_dssp EEEEECCCHHHHT
T ss_pred CEEEEEECHHHHH
T ss_conf 1378652023332
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0063 Score=34.92 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=64.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC----CCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 9399998479999379998880787689----884899889768983777788864899972397789789999999803
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~~~----~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~ 698 (1470)
|-.++++|+.|+|||||++.+.|+-... .|.. .. .+...... .+.+
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~--~~-~~~~~~~~-------------~~~~-------------- 50 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT--RD-VLREHIHI-------------DGMP-------------- 50 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCC--CS-CEEEEEEE-------------TTEE--------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCC--CC-EEEEEEEC-------------CCCE--------------
T ss_conf 989999899999899999999688866751246642--20-47653202-------------6823--------------
Q ss_pred CHHHHHHCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 21799740178852005899--8774589999999999824999999827677879999999999999761299589998
Q 000475 699 LNQDIEMWADGDLSVVGERG--INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776 (1470)
Q Consensus 699 L~~di~~lp~Gd~t~iGe~G--~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilv 776 (1470)
...+...| ..-.+.++..+..+...|.++|+++++-....-+.....+.+.+.+.....++.+|+|
T Consensus 51 ------------~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv 118 (161)
T d2gj8a1 51 ------------LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVV 118 (161)
T ss_dssp ------------EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEE
T ss_pred ------------EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEC
T ss_conf ------------54136532122465202478999999987413320110256542034555444555420141010204
Q ss_pred CCCCCHHHHCC
Q ss_conf 17932153159
Q 000475 777 THQLEFLDAAD 787 (1470)
Q Consensus 777 TH~~~~l~~~D 787 (1470)
-+..+..+...
T Consensus 119 ~NK~Dl~~~~~ 129 (161)
T d2gj8a1 119 RNKADITGETL 129 (161)
T ss_dssp EECHHHHCCCC
T ss_pred CCHHHHHHHHH
T ss_conf 65444335588
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.04 E-value=0.00014 Score=47.45 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=18.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 189399999899999889999984177799758999
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1280 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~I 1280 (1470)
..+.-+.|+|+|||||||++++|++.++|..=-|.|
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 837888999403566257899986530145623311
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.01 E-value=0.0095 Score=33.55 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=18.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 518939999847999937999888078
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe 646 (1470)
+.+|+++.|.|++|+|||+|+.-++-.
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 789808999947999799999999972
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.94 E-value=0.0013 Score=40.27 Aligned_cols=115 Identities=20% Similarity=0.154 Sum_probs=73.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 18939999847999937999888078768988489988976898377778886489997239778978999999980321
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L~ 700 (1470)
.++-++.+.||+||||||.+.+++.+++.....++.+...+-|.-
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~----------------------------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI----------------------------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-----------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC-----------------------------------
T ss_conf 410548987678777447799986662578746999626743456-----------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 79974017885200589987745899999999998249999998276778799999999999997612995899981793
Q 000475 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1470)
Q Consensus 701 ~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~ 780 (1470)
++--++++.+. .|+.---++..++-+||||++.+|.- |+++++..++ ....|..|+-.-|--
T Consensus 201 ------~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 201 ------DGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTN 262 (401)
T ss_dssp ------SSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCS
T ss_pred ------CCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHH----HHHCCCEEEEEECCC
T ss_conf ------78870265587-----67799999999984138889845768---7599999999----972498589983367
Q ss_pred CHHHHCCE
Q ss_conf 21531598
Q 000475 781 EFLDAADL 788 (1470)
Q Consensus 781 ~~l~~~D~ 788 (1470)
+-....++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.87 E-value=0.0093 Score=33.63 Aligned_cols=33 Identities=36% Similarity=0.329 Sum_probs=26.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 189399999899999889999984177799758
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~ 1277 (1470)
.++..+-+.|||||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.0033 Score=37.02 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCEEEEC-CCEEEEECCCCCCHHHHHHHHHC--CCCCCCCCEEEECCEEEEECCCCCCCC-CCHHHHHHCCCCCCHHHH
Q ss_conf 47667518-93999984799993799988807--876898848998897689837777888-648999723977897899
Q 000475 615 TDKMKIMK-GSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKDMRQSFY 690 (1470)
Q Consensus 615 ~~nl~i~~-G~~vaivG~~GsGKStLl~~ilG--e~~~~~G~vi~~~g~iayv~Q~~wi~~-~TIreNIlfg~~~~~~~y 690 (1470)
.|++.+.+ +....|.|||.|||||+++.+.= .|.. .|. .+...-+-++--..|+. -...|++.-|..
T Consensus 32 pNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq-~G~--~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S------ 102 (234)
T d1wb9a2 32 ANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGS--YVPAQKVEIGPIDRIFTRVGAADDLASGRS------ 102 (234)
T ss_dssp CEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTC--CBSSSEEEECCCCEEEEEEC----------------
T ss_pred CEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCC--EEECCCEECCCCHHHEEEECCCCCCCCCHH------
T ss_conf 40579889953999954673136899998799999987-297--674176661344202348746753436531------
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C
Q ss_conf 999998032179974017885200589987745899999999998249999998276778799999999999997612-9
Q 000475 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S 769 (1470)
Q Consensus 691 ~~vi~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l-~ 769 (1470)
-=..+-+|++-.----.+..++|+||+.++=++..+..+....+..+. +
T Consensus 103 ------------------------------~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~ 152 (234)
T d1wb9a2 103 ------------------------------TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK 152 (234)
T ss_dssp -------------------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT
T ss_pred ------------------------------HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ------------------------------89999999999997454660885322235877456667898764543204
Q ss_pred -CCEEEEECCCCCH
Q ss_conf -9589998179321
Q 000475 770 -QKTVLYTTHQLEF 782 (1470)
Q Consensus 770 -~kTvilvTH~~~~ 782 (1470)
+..++++||..+.
T Consensus 153 ~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 153 IKALTLFATHYFEL 166 (234)
T ss_dssp TCCEEEEECSCGGG
T ss_pred CCCEEEEECCHHHH
T ss_conf 54428985246877
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.016 Score=31.78 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC----CCCCCEEEECCEEEEECCCCCCCCCCHHHHHH-CCCCCCHHHHHHHH
Q ss_conf 51893999984799993799988807876----89884899889768983777788864899972-39778978999999
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHGKKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVL 694 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~----~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIl-fg~~~~~~~y~~vi 694 (1470)
+.+|+++.|+|+.|+|||+|+..++-.+. ...+.. .-.+.+.|+.-+.. ...+++.+. .+..++.+.+....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~-~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~ 102 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGE-LPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVA 102 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCC-CCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 558958999928999899999999999976997211123-57873689851234--999999999986236866653123
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHH-C
Q ss_conf 980321799740178852005899877458999999999982499999982767787-----9999999999999761-2
Q 000475 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-----DAHTGTHLFKQCLMGL-L 768 (1470)
Q Consensus 695 ~~c~L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~Sal-----D~~~~~~i~~~~i~~~-l 768 (1470)
. .+..-+ ..+...... -....-.+ .....+++++++|-..... |......++..+..-. .
T Consensus 103 ~---------~~~~~~--~~~~~~~~~--~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~ 168 (274)
T d1nlfa_ 103 D---------GLLIQP--LIGSLPNIM--APEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 168 (274)
T ss_dssp H---------HEEECC--CTTSCCCTT--SHHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred C---------CCEECC--CCCCCCHHH--HHHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 3---------323214--567420357--89999998-875267658962813542266523225689999887777644
Q ss_pred CCCEEEEECCC
Q ss_conf 99589998179
Q 000475 769 SQKTVLYTTHQ 779 (1470)
Q Consensus 769 ~~kTvilvTH~ 779 (1470)
.+.|++++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=2.1e-05 Score=53.79 Aligned_cols=160 Identities=13% Similarity=0.041 Sum_probs=78.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCC------CCCC-
Q ss_conf 999998999998899999841777997589996972799997887424189826777776657770386------9999-
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDP------LEQH- 1321 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp------~~~~- 1321 (1470)
.|.|+|+.|+|||||+..+.+.+....+.+.+.+.+........+.....-+.|+...+.....++... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred CHHHHHHHHHHCCCHHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999849199998-400134763457999889259999999998703998899846678999997999999999
Q 000475 1322 SDQEIWEVINKCHLAEIVR-QDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATDNVIQQTIR 1400 (1470)
Q Consensus 1322 sD~eI~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~ 1400 (1470)
..+++.+.. ...+ +.+. ....+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 83 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQLA-LPVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp CHHHHHTTT-TTTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CHHHHHHHH-HHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 377777788-9999-99988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEEEC
Q ss_conf 8659937899714
Q 000475 1401 EETSRCTVITVAH 1413 (1470)
Q Consensus 1401 ~~f~~~TVI~IAH 1413 (1470)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.36 E-value=0.017 Score=31.52 Aligned_cols=175 Identities=12% Similarity=0.108 Sum_probs=78.2
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCCC-EEECCCCCCCCCCHHHH
Q ss_conf 221158851893999998999998899999841-7779975899969727999978874241-89826777776657770
Q 000475 1237 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR-VVEPSGGRILIDGVDISMIGLQDLRSRL-SIIPQDPMLFQGTVRTN 1314 (1470)
Q Consensus 1237 Lk~is~~i~~GekvgIVGrTGSGKSTLi~~L~r-l~~p~~G~I~IDG~dI~~i~l~~LRs~i-siIPQdp~LF~gTIR~N 1314 (1470)
|+.+.--+.+|+.+.|.|++|+||||++.-+.. ...-..-.+.+-.. +.+.+....++ +...+-+.--
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~------- 94 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQ------- 94 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGG-------
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHH-------
T ss_conf 888746978980899994799979999999997265533663457640---1111357769999864587101-------
Q ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCC-----CC
Q ss_conf 386999999999999998491999984001347634579998892599999999987--03998899846678-----99
Q 000475 1315 LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVL--LKKKRILVLDEATA-----SI 1387 (1470)
Q Consensus 1315 Ldp~~~~sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARAL--Lr~~~ILiLDEaTS-----sl 1387 (1470)
.+..-.+.++...+.++.......-...+.+........+ .+...+.. -.+++++++|=-+. +-
T Consensus 95 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~ 165 (277)
T d1cr2a_ 95 -------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHISIVVSASGE 165 (277)
T ss_dssp -------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEEC-------
T ss_pred -------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf -------0122222145677888988740352146621433106899--9998654321367625997054212034654
Q ss_pred CHHH--HHHHHHHHHHHC--CCCEEEEEECCH----------------HHH-------HHCCEEEEEECC
Q ss_conf 9997--999999999865--993789971491----------------334-------202989999598
Q 000475 1388 DTAT--DNVIQQTIREET--SRCTVITVAHRI----------------PTV-------IDNDLVLVLDEG 1430 (1470)
Q Consensus 1388 D~~T--d~~Iq~~I~~~f--~~~TVI~IAHRl----------------~ti-------~~~DrVlVL~~G 1430 (1470)
+..+ ...+.+.+++.. .+|+|++++|=- +.+ ..+|.|+.+..-
T Consensus 166 ~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 4306778999999999765016552031035632244455433332112123430015038699999846
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.15 E-value=0.032 Score=29.47 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=73.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 51893999984799993799988807876898848998897689837777888648999723977897899999998032
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L 699 (1470)
+++|.++.|.|+.|||||+|..-++-......+. +.|++-+ ...+.+.+-.+....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~-------~~~is~e-----------------~~~~~~~~~~~~~~~ 78 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKER-------AILFAYE-----------------ESRAQLLRNAYSWGM 78 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC-------EEEEESS-----------------SCHHHHHHHHHTTSC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------CCEEECC-----------------CCHHHHHHHHHHCCC
T ss_conf 8698499999189999999999999999872324-------4112126-----------------799999999998299
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 1799740178852005899877458999999999982-499999982767787---9999999999999761-2995899
Q 000475 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-SNSDVYIFDDPFSAV---DAHTGTHLFKQCLMGL-LSQKTVL 774 (1470)
Q Consensus 700 ~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly-~~~~i~lLDdp~Sal---D~~~~~~i~~~~i~~~-l~~kTvi 774 (1470)
..+ +....|............. .+...-.+.+++. .++++.+.|...... +...-..........+ ..+.|++
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 79 DFE-EMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp CHH-HHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHH-HHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 869-9854586179973000101-79999999999984088533220431430489999999999999999998698399
Q ss_pred EECCCCC-----------HHHHCCEEEEEEC
Q ss_conf 9817932-----------1531598999949
Q 000475 775 YTTHQLE-----------FLDAADLVLVMKD 794 (1470)
Q Consensus 775 lvTH~~~-----------~l~~~D~I~vl~~ 794 (1470)
++.|... .-..+|.|+.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9985675125544577640464216999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0034 Score=36.97 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+=.++|+|.+|+|||||+++++|.-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0034 Score=36.91 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 893999984799993799988807876898848
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
+|+.++++|++|.|||||+++|+|+...-.|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.82 E-value=0.0043 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999989999988999998417779975899
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ 1279 (1470)
.|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.025 Score=30.34 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984799993799988807876
Q 000475 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+.+.||.|+||||+.++++-++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999988999999997622
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.74 E-value=0.015 Score=31.94 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=14.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999998999998899999841
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
+.|.|+|++||||||+.+.|.+
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.0042 Score=36.26 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=56.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE----E-EECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 999984799993799988807876898848----9-98897689837777888648999723977897899999998032
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAA----I-KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~G~v----i-~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L 699 (1470)
.++|+|.+|+|||||+++|+|.-....|.. . .......|. .+...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~--~~~~~---------------------------- 107 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK--HPNIP---------------------------- 107 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE--CSSCT----------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEE--CCCCC----------------------------
T ss_conf 799989999978999999958886777567899988704455311--06897----------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 17997401788520058998774589999999999824999999827677879999999999999761299589998179
Q 000475 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1470)
Q Consensus 700 ~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~ 779 (1470)
..+.++..|..-...+ .+=.+++.-..+.|++++|-.- .... ....+.+. +.. .++-+++|-++
T Consensus 108 ----------~~~l~DtPG~~~~~~~-~~~~~~~~~~~~~d~~l~~~~~-~~~~-~d~~l~~~-l~~--~~k~~~~V~nK 171 (400)
T d1tq4a_ 108 ----------NVVFWDLPGIGSTNFP-PDTYLEKMKFYEYDFFIIISAT-RFKK-NDIDIAKA-ISM--MKKEFYFVRTK 171 (400)
T ss_dssp ----------TEEEEECCCGGGSSCC-HHHHHHHTTGGGCSEEEEEESS-CCCH-HHHHHHHH-HHH--TTCEEEEEECC
T ss_pred ----------EEEEEECCCCCCCCCC-HHHHHHHHHHHCCEEEEEECCC-CCCH-HHHHHHHH-HHH--CCCCEEEEEEC
T ss_conf ----------0799837985433344-9999987433226599996588-8878-89999999-997--69987999708
Q ss_pred CCHH
Q ss_conf 3215
Q 000475 780 LEFL 783 (1470)
Q Consensus 780 ~~~l 783 (1470)
.+..
T Consensus 172 ~D~~ 175 (400)
T d1tq4a_ 172 VDSD 175 (400)
T ss_dssp HHHH
T ss_pred CCCC
T ss_conf 6321
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.67 E-value=0.05 Score=28.02 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++++|.+|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.50 E-value=0.0037 Score=36.66 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.45 E-value=0.0043 Score=36.15 Aligned_cols=24 Identities=46% Similarity=0.609 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
-.++++|.+|+|||||+++|+|+-
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 489998999986999999985898
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.45 E-value=0.059 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=18.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18939999847999937999888078
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe 646 (1470)
++-+++.++|+.||||||+.+.++-.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0037 Score=36.70 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.07 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 51893999998999998899999841
Q 000475 1244 FPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1244 i~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
+.+|+.+-|.|++|+||||+...|.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.15 E-value=0.066 Score=27.11 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++.++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.13 E-value=0.0043 Score=36.20 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.|+++++.|++||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.06 E-value=0.076 Score=26.62 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=63.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 75189399998479999379998880787689884899889768983777788864899972397789789999999803
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~ 698 (1470)
.+++..-+.+.||.|+|||+|.+++.+++.. ..+.+. .
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---~~~~~~----------------------------~----------- 74 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIK----------------------------G----------- 74 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---EEEEEC----------------------------H-----------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEE----------------------------H-----------
T ss_conf 9998875788789987630477887877189---479988----------------------------7-----------
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHH--
Q ss_conf 21799740178852005899877458999999999982499999982767787999---------9999999999761--
Q 000475 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH---------TGTHLFKQCLMGL-- 767 (1470)
Q Consensus 699 L~~di~~lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~---------~~~~i~~~~i~~~-- 767 (1470)
.++.. +..| ...++-|-.+.+|-...|-|+++||.-+..... ...++....+..+
T Consensus 75 --~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 140 (265)
T d1r7ra3 75 --PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 140 (265)
T ss_dssp --HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-
T ss_pred --HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf --99525------3165------158999999999986398435687546324557876788737999999999999628
Q ss_pred -C--CCCEEEEECCCCCHHH
Q ss_conf -2--9958999817932153
Q 000475 768 -L--SQKTVLYTTHQLEFLD 784 (1470)
Q Consensus 768 -l--~~kTvilvTH~~~~l~ 784 (1470)
. .+--+|..||+++.++
T Consensus 141 ~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 141 MSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp -----CCEEEECCBSCTTTS
T ss_pred CCCCCCEEEEEECCCCHHCC
T ss_conf 67779989999179922279
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.99 E-value=0.079 Score=26.49 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 518939999989999988999998417
Q 000475 1244 FPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1244 i~~GekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+++|..+-|.|++|+|||++..-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.90 E-value=0.0093 Score=33.63 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999847999937999888078768
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
|.+++++||+||||+|+.+.+..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.89 E-value=0.032 Score=29.47 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 518939999847999937999888078
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++|+++.|.|+.|||||+|..-++-.
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 558879999858989889999999998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.87 E-value=0.0067 Score=34.70 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.+||+|++|||||||+..|.+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.82 E-value=0.0082 Score=34.05 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999998999998899999841777
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
|..+.|+||+|||||||.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.0099 Score=33.42 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 999984799993799988807876898848998897689837777888
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT 672 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~ 672 (1470)
+++|.|++||||||+.+.|...+....+.. ++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~-----~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEHR-----RVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCC-----CEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEECC
T ss_conf 999968999987689999999973046899-----6599952156898
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.75 E-value=0.0071 Score=34.53 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999379998880787
Q 000475 626 VAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~ 647 (1470)
|||+|+.++|||||++++.|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.01 Score=33.25 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHHCC
Q ss_conf 925999999999870399889984667899999799-99999998659937899714913342029
Q 000475 1358 SVGQRQLVCLARVLLKKKRILVLDEATASIDTATDN-VIQQTIREETSRCTVITVAHRIPTVIDND 1422 (1470)
Q Consensus 1358 S~GQRQll~LARALLr~~~ILiLDEaTSslD~~Td~-~Iq~~I~~~f~~~TVI~IAHRl~ti~~~D 1422 (1470)
...+......+...++++.+++++=.-..-+...+. ...+.++....++.+|++........+-.
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~ 129 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL 129 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHH
T ss_conf 520247899999998741332011025654203455544455542014101020465444335588
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.65 E-value=0.0092 Score=33.66 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
-++++|++|+|||||+++|.|+-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.61 E-value=0.0036 Score=36.80 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 893999984799993799988807876898848
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
+|+.++++|++|.|||||+++|+|+.....|.+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.60 E-value=0.0072 Score=34.44 Aligned_cols=37 Identities=41% Similarity=0.717 Sum_probs=29.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 51893999984799993799988807876898848998
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~ 657 (1470)
++.+.-+.|+|++||||||+++++++++++.. .++.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~-rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC-CEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CEEEC
T ss_conf 98378889994035662578999865301456-23311
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.099 Score=25.78 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=23.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 51893999984799993799988807876
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
++...-+.+.||.|||||++.+++..++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.028 Score=29.96 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 7518939999847999937999888078768988489988
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~ 658 (1470)
-+++|.++.+.|+.|||||||...++.......|.++.++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid 89 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 89 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9667358998057774789999999999870898799986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.011 Score=32.95 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999937999888078768
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
+|.+++|+||+|+||+||.+.++-+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.0079 Score=34.14 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999937999888078768
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
+.-.++|.|+.|+|||||+..+...+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.45 E-value=0.11 Score=25.55 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8939999989999988999998417
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.012 Score=32.71 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 9999847999937999888078768988489988976898377778
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi 670 (1470)
+++|.|++||||||+.+.|.-.+...... ...-.+..++++.|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--CCCCCEEEEECCCCC
T ss_conf 99998999787999999999996410134--578843999346532
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.39 E-value=0.0038 Score=36.57 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECC
Q ss_conf 893999998999998899999841777997589996972799997887424189826
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1302 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQ 1302 (1470)
.|+...++|+||.|||||+++|.+-.....|.|.-.. .-|.|.-|.+--+-|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~~ 148 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHTS 148 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEECC
T ss_conf 3564999877873487898751517676403555335----8971244347888627
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.38 E-value=0.015 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.++++|+.|+|||||++.++|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.37 E-value=0.0086 Score=33.89 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999379998880787
Q 000475 626 VAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+|++|..|+|||||++.+.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.36 E-value=0.013 Score=32.51 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.35 E-value=0.029 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=25.6
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66751893999984799993799988807876
Q 000475 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 617 nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.+.-++|..+.+.|.+||||||+.+.+.-.+.
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98589986999989999998999999998877
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.33 E-value=0.015 Score=31.98 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.032 Score=29.46 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=34.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHH
Q ss_conf 9999989999988999998417779975899969727999978874241898267777766577
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVR 1312 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR 1312 (1470)
.|||.|++||||||+.+.|..++.-..+ ..++.+|++|.+..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHH
T ss_conf 9999689999876899999999730468-----------------9965999521568984588
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.0079 Score=34.18 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=17.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998479999379998880787
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.-.++++|.+++|||||+++|.|.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.06 E-value=0.13 Score=24.97 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=10.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 93999984799993799988807
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilG 645 (1470)
+..++++||+|+||||.+.-|.-
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999989999988999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.00 E-value=0.015 Score=32.09 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
..++|+|+.|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.016 Score=31.77 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999998999998899999841777
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|..+.|+||||+||+||.+.|+...+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.95 E-value=0.024 Score=30.46 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999989999988999998417779975899969
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1282 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1282 (1470)
+|+.|.|+|++||||||+.+.|.+.... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.88 E-value=0.014 Score=32.23 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+|+|+|++|+|||||+++|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.034 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399998479999379998880787
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.83 E-value=0.025 Score=30.39 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=22.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399998479999379998880787
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
|+|..++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.77 E-value=0.017 Score=31.62 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=30.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 751893999984799993799988807876898848
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
-++.|.++-+.|+.|||||+|...++...++..|.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v 88 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC 88 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 866754789805876522799999999997079989
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.74 E-value=0.14 Score=24.56 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
-+.+.||.|+|||++.+++..++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.68 E-value=0.14 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+-..++|+||.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.68 E-value=0.011 Score=32.95 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.+.+.||.|+||||+.++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.075 Score=26.66 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.50 E-value=0.036 Score=29.16 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++|.|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.43 E-value=0.028 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984799993799988807876
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
++|..+.++|.+||||||+.++|.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.37 E-value=0.02 Score=31.07 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984799993799988807876
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
++.-+++++|+.|+|||||++.+.|...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.37 E-value=0.028 Score=29.93 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
=+++++|..|+|||||++.+.+.-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 299999999989999999996798
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.34 E-value=0.025 Score=30.40 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 9399998479999379998880787689884
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~~~~G~ 653 (1470)
+.+++|.|+.||||||+.+.|.-.+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.33 E-value=0.027 Score=30.13 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
-+||+|.+.+|||||+++|+|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.03 Score=29.75 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++|+|+.|+|||||++.+.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.19 E-value=0.034 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=24.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999998999998899999841777
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
|+|-+|.|.|+.||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.017 Score=31.55 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999989999988999998417779975899
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1279 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ 1279 (1470)
.++|+|++|||||||++.|.+.+....-++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999918999899999999999997797687
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.15 E-value=0.036 Score=29.08 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=18.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799993799988807876
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.+++.|+|++||||||+.+.|..+++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.035 Score=29.26 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=13.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+++|+||+|+||+||.+.++.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.09 E-value=0.18 Score=23.83 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=16.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+...++++||+|+||||-+.-|.-.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.07 E-value=0.18 Score=23.80 Aligned_cols=122 Identities=13% Similarity=0.202 Sum_probs=55.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 9999847999937999888078768--98848998897689837777888648999723977897899999998032179
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~--~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L~~d 702 (1470)
-++|+|++|+|||||..+++..... ..|.+ .+..+. .+++++..++ ...+..-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v----------~~g~~~------------~D~~~~E~~r---~~ti~~~ 58 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRV----------EEGTTT------------TDYTPEAKLH---RTTVRTG 58 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG----------GGTCCS------------SCCSHHHHHT---TSCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCC----------HHCCCC------------CCCHHHHHHH---CCEEEEE
T ss_conf 99999488980999999999970975530662----------222113------------5626988873---8768751
Q ss_pred HH--HCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 97--4017885200589987-74589999999999824999999827677879999999999999761299589998179
Q 000475 703 IE--MWADGDLSVVGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1470)
Q Consensus 703 i~--~lp~Gd~t~iGe~G~~-LSGGQkqRi~LARAly~~~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~ 779 (1470)
.. .+.+---+.|...|.. ++|--..=+. ..|.-|++.| +..++-++|.++ ++.+.. .+..++++-++
T Consensus 59 ~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~-----~~D~avlvvd-a~~Gv~~~t~~~-~~~~~~---~~~p~~i~iNk 128 (267)
T d2dy1a2 59 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALE-----AADAALVAVS-AEAGVQVGTERA-WTVAER---LGLPRMVVVTK 128 (267)
T ss_dssp EEEEEETTEEEEEEECCCSGGGHHHHHHHHH-----HCSEEEEEEE-TTTCSCHHHHHH-HHHHHH---TTCCEEEEEEC
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHC-----CCCCEEEEEE-CCCCCCCHHHHH-HHHHHH---CCCCCCCCCCC
T ss_conf 0222234321068806815543355654312-----4673389842-357742115788-776554---04431013332
Q ss_pred CC
Q ss_conf 32
Q 000475 780 LE 781 (1470)
Q Consensus 780 ~~ 781 (1470)
++
T Consensus 129 ~D 130 (267)
T d2dy1a2 129 LD 130 (267)
T ss_dssp GG
T ss_pred CC
T ss_conf 02
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.18 Score=23.77 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 18939999989999988999998417779975899969
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1282 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1282 (1470)
++...+-+.||.|+|||++++++.+..... -+.+++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~ 78 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEH
T ss_conf 988867866899888228999999982998--799886
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.04 E-value=0.18 Score=23.77 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=56.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 99984799993799988807876898848998897689837777888648999723977897899999998032179974
Q 000475 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~wi~~~TIreNIlfg~~~~~~~y~~vi~~c~L~~di~~ 705 (1470)
+.|.|++|||||-|++++.-++....-. +.|++- .+. ...+.+.+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~-------~~~~~~---------~~~--------~~~~~~~~~~--------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYR-------VIYSSA---------DDF--------AQAMVEHLKK--------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCC-------EEEEEH---------HHH--------HHHHHHHHHH---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC-------EEEECH---------HHH--------HHHHHHHHHC---------
T ss_conf 7998889983999999999874467650-------488443---------787--------9999999871---------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHH-CCCCEEEEECCCC
Q ss_conf 0178852005899877458999999999982499999982767787-9999999999999761-2995899981793
Q 000475 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGL-LSQKTVLYTTHQL 780 (1470)
Q Consensus 706 lp~Gd~t~iGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~Sal-D~~~~~~i~~~~i~~~-l~~kTvilvTH~~ 780 (1470)
++. .-.+.-+.++|++++||.=.-- +......+|. ++... ..++.+|+.+...
T Consensus 86 ------------------~~~---~~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 86 ------------------GTI---NEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp ------------------TCH---HHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred ------------------CCH---HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf ------------------662---667898762130101126550586577889999-9998763166389954875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.97 E-value=0.035 Score=29.20 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|+.|+|||||++.+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.90 E-value=0.19 Score=23.63 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHH
Q ss_conf 3998899846678999997999999999865--993789971491334
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREET--SRCTVITVAHRIPTV 1418 (1470)
Q Consensus 1373 r~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti 1418 (1470)
.+..++++||.-.+=|+.--..+-..+-+.+ .+++++++||..+..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 977278554545686233200258888888862376137865202333
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.0093 Score=33.61 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 999984799993799988807876898848
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
.+.|+|+.|+|||||++.+..++....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 999988999719999999999999779979
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.85 E-value=0.15 Score=24.40 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799993799988807876
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.-+.+.||.|||||++.+++..+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.82 E-value=0.038 Score=28.94 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999998999998899999841777
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
+.|-.|-++|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=0.038 Score=28.93 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.78 E-value=0.2 Score=23.51 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799993799988807876
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+...++++||+|+||||.+.-|.-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.74 E-value=0.041 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399999899999889999984177
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.73 E-value=0.008 Score=34.11 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++++.|+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.72 E-value=0.036 Score=29.16 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999989999988999998417779
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVVEP 1273 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~~p 1273 (1470)
=.|||.|++||||||+.+.|...+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89997898878999999999998363
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.041 Score=28.66 Aligned_cols=24 Identities=38% Similarity=0.797 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.++|+||+||||+||.+.++.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.58 E-value=0.043 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|.++|+||+|||||+++|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.55 E-value=0.12 Score=25.06 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799993799988807
Q 000475 625 KVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilG 645 (1470)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.29 E-value=0.047 Score=28.26 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.27 E-value=0.062 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=21.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399998479999379998880787
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
|+|-.++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.24 E-value=0.041 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.20 E-value=0.048 Score=28.14 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799993799988807876
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.++.|+|+.||||||+.+.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.12 E-value=0.029 Score=29.80 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 3999984799993799988807876898848
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
..++|+|..|||||||+..++.++......+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v 32 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV 32 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 0999980999989999999999998679837
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.13 Score=24.98 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999847999937999888078
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe 646 (1470)
-+++++|..|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.056 Score=27.63 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCC
Q ss_conf 999998999998899999841777997589996972799997887424189826777776
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1308 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~ 1308 (1470)
.|||.|++||||||+.+.|...+.-... ..-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--------------CCCCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641013--------------457884399934653224
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.84 E-value=0.057 Score=27.57 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984799993799988807876
Q 000475 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
++|+||+||||+|+.+.++-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.064 Score=27.23 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.82 E-value=0.051 Score=27.97 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999998999998899999841777
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
...|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.80 E-value=0.062 Score=27.33 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799993799988807876
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.77 E-value=0.061 Score=27.39 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+|+++|++|+|||||++.|++-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.049 Score=28.13 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999899999889999984177
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
...+.|+||||+||+||++.|.+-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.63 E-value=0.045 Score=28.38 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.62 E-value=0.17 Score=24.03 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=31.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCC
Q ss_conf 518939999847999937999888078768988489988976898377
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~ 667 (1470)
+++|+++.|.|+.|||||+|..-++-........- ...+.+.|+...
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~-~~~~~~~~i~~~ 77 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG-GGEGKCLYIDTE 77 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTT-CCSCEEEEEESS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEEC
T ss_conf 86996999983899988999999999863124312-689639999402
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.55 E-value=0.058 Score=27.51 Aligned_cols=22 Identities=45% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|+|||++|+|||||+++|++-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.53 E-value=0.27 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 51893999998999998899999841777
Q 000475 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1244 i~~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
+++..-+-+.||.|+|||++++++.+...
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.52 E-value=0.07 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799993799988807876
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
-+++++|+.|+|||||++.+.|+..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 7999999999899999999808998
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.48 E-value=0.047 Score=28.23 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999899999889999984177
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.+|+|.|++|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.2 Score=23.35 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.38 E-value=0.071 Score=26.86 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
-.+||+|.+.+|||||+++|++.-
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 879999699854999999998236
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.0032 Score=37.15 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.1
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 66751893999984799993799988807
Q 000475 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 617 nl~i~~G~~vaivG~~GsGKStLl~~ilG 645 (1470)
.+++.+| +++|+|+|||||||++.||.-
T Consensus 19 ~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 19 TFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 9974998-089988999987999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.32 E-value=0.066 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984799993799988807876
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
++.-+++|.|..||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.28 E-value=0.076 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
-++|+|+.|+|||||++.+.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.27 E-value=0.16 Score=24.18 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998479999379998880787
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+.+++|+|-..+|||||++++.+--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8348888999998899999997799
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.11 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 51893999984799993799988807876
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+++|+++.|.|++|||||+|...++....
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 85997999995899999999999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.095 Score=25.89 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8518939999989999988999998417
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
-+++|+.+-|.|++||||||+..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.20 E-value=0.29 Score=22.23 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 999998276778799999999999997612995899981793215
Q 000475 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1470)
Q Consensus 739 ~~i~lLDdp~SalD~~~~~~i~~~~i~~~l~~kTvilvTH~~~~l 783 (1470)
..|+++||.=. +.......+. ..+...-.+...|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Ll-k~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALL-KTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHH-HHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHH-HHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-8999999999-9985689886999973885636
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.19 E-value=0.055 Score=27.69 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999989999988999998417779975899969
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1282 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1282 (1470)
..|.|+|++||||||+.+.|.+.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.18 E-value=0.085 Score=26.29 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=41.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH-HHCCCEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 189399999899999889999984177799758999697279999788-7424189826777776657770386999999
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD-LRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1323 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD 1323 (1470)
|+|-++.|+|+.||||||+.+.|..-+ |-..|+ ..+ +|.. .++..-....++..++-.....+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~--------~gdllr~~----~~~~~~~g~~~~~~~~~g~~~~~ 64 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA--------TGDMLRAM----VASGSELGKKLKATMDAGKLVSD 64 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE--------HHHHHHHH----HHHTCHHHHHHHHHHHTTCCCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE--------HHHHHHHH----HHCCCCCCCHHHHHHCCCCCCCC
T ss_conf 996389998999998899999999986----985775--------77889988----74267433023313216774333
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q 000475 1324 QEIWEVINK 1332 (1470)
Q Consensus 1324 ~eI~~aL~~ 1332 (1470)
+.+.+.+..
T Consensus 65 ~~v~~~~~~ 73 (190)
T d1ak2a1 65 EMVLELIEK 73 (190)
T ss_dssp HHHHHHHHH
T ss_pred CEEEEEEHH
T ss_conf 024531113
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.05 E-value=0.075 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799993799988807876
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
..+|++|...+|||||++++.|--.
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9176889999989999999978897
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.04 E-value=0.073 Score=26.79 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399998479999379998880787
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
++.-+++++|..|||||||++.+.|.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.98 E-value=0.08 Score=26.49 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++|+|..+||||||+++|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.3 Score=22.07 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=12.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
..++++||+|+||||.+.-|.-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.94 E-value=0.086 Score=26.22 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998479999379998880
Q 000475 625 KVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~il 644 (1470)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.94 E-value=0.073 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.93 E-value=0.3 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=12.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
..++++||+|+||||.+.-|.-.+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.92 E-value=0.075 Score=26.67 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 399998479999379998880
Q 000475 624 SKVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~il 644 (1470)
.+++|+|++||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.91 E-value=0.081 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 59999999998703998--89984667899999799999999986599378997149
Q 000475 1360 GQRQLVCLARVLLKKKR--ILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHR 1414 (1470)
Q Consensus 1360 GQRQll~LARALLr~~~--ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHR 1414 (1470)
.+.+--.+++..++++. |++...++.....+....+.+.+... ..+|++++++-
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 899999999999827775168763256310034999999973867-88589998204
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.90 E-value=0.084 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.2 Score=23.43 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
-+++++|..|+|||||++.+++.-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989978999999997197
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.81 E-value=0.078 Score=26.56 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.++|+|...||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.81 E-value=0.078 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399999899999889999984177
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
+..-||.+||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.80 E-value=0.093 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9399999899999889999984177799758
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1277 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~ 1277 (1470)
+..|+|.|+.||||||+.+.|...+.....+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.77 E-value=0.077 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.04 Score=28.79 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799993799988807876
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+|..+.++|++||||||+.+.|.-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.70 E-value=0.17 Score=24.03 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 189399998479999379998880
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~il 644 (1470)
-.|.=+.++|++|+||||+...+.
T Consensus 13 ~~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 13 VFGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHH
T ss_pred ECCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999999998189999899999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.70 E-value=0.092 Score=25.99 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.06 Score=27.41 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|.|+|||||||+||.+.|..-.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.57 E-value=0.32 Score=21.82 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=30.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEEECCHHHH
Q ss_conf 039988998466789999979999-9999986--5993789971491334
Q 000475 1372 LKKKRILVLDEATASIDTATDNVI-QQTIREE--TSRCTVITVAHRIPTV 1418 (1470)
Q Consensus 1372 Lr~~~ILiLDEaTSslD~~Td~~I-q~~I~~~--f~~~TVI~IAHRl~ti 1418 (1470)
..+..++++||.-.+=++.--..+ ...++.. ..++.+++.+|.....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.26 Score=22.52 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.52 E-value=0.33 Score=21.79 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984799993799988807876
Q 000475 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
..+.||.|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.47 E-value=0.11 Score=25.45 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=50.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 18939999989999988999998417779975899969727999978874241898267777766577703869999999
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1324 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~ 1324 (1470)
+.-+.|-++|..||||||+.+.++.. .|.+.|+ .+++++ -.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~--------~D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVN--------RDTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEE--------HHHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEEC--------HHHHHH---------------------------HH
T ss_conf 99989999899999899999999976----5978976--------077778---------------------------88
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999849199998400134763457999889259999-99999870399889984
Q 000475 1325 EIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL-VCLARVLLKKKRILVLD 1381 (1470)
Q Consensus 1325 eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQl-l~LARALLr~~~ILiLD 1381 (1470)
.+.+.++. .+..|.+..++ ..|++..+|+. +.+|+..=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------99779995551--76799999999999998558887999948
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.44 E-value=0.098 Score=25.79 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.21 Score=23.21 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|..|+|||||++.+.+.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.28 E-value=0.34 Score=21.65 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5189399998479999379998880787
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
++++.++.+.||.||||||..+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.078 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799993799988807876
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
++.+++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.17 Score=24.02 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=32.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 75189399998479999379998880787689884899889768983777
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~ 668 (1470)
-+++|+.+.|.|+.|||||+|...++.......... .....+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-YPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-BCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECHHH
T ss_conf 976897999988998878899999999997444316-6662488740177
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.16 E-value=0.065 Score=27.16 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|||+|++++|||||+++|++-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.14 E-value=0.11 Score=25.40 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.08 E-value=0.07 Score=26.91 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999989999988999998417
Q 000475 1250 IGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1250 vgIVGrTGSGKSTLi~~L~rl 1270 (1470)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.05 E-value=0.096 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999989999988999998417
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.12 Score=25.22 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.96 E-value=0.094 Score=25.94 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999847999937999888078
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe 646 (1470)
--+++++|+.|+|||||++.+.+.
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 779999999998999999999648
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.93 E-value=0.11 Score=25.28 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.93 E-value=0.12 Score=25.24 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=38.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 39999989999988999998417779975899969727999978874241898267777766577703869999999999
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1327 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~eI~ 1327 (1470)
..|.|+|+.||||||+.+.|..-+ |-+.|+.- +-+|..+ +...-....+...++.....+++.+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~~g-------~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF----GWVHLSAG-------DLLRQEQ----QSGSKDGEMIATMIKNGEIVPSIVTV 71 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH----HTTCTTHHHHHHHHHTTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 489998999998899999999997----99267212-------6888875----10013324566676521232027899
Q ss_pred HHHHH
Q ss_conf 99998
Q 000475 1328 EVINK 1332 (1470)
Q Consensus 1328 ~aL~~ 1332 (1470)
..+..
T Consensus 72 ~~~~~ 76 (194)
T d1qf9a_ 72 KLLKN 76 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 98887
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.049 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999998999998899999841777
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.90 E-value=0.088 Score=26.15 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999899999889999984177
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.089 Score=26.11 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999998999998899999841777
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.+..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.12 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 18939999847999937999888078768
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.21 Score=23.21 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799993799988807
Q 000475 625 KVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilG 645 (1470)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.85 E-value=0.37 Score=21.40 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7518939999847999937999888078
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe 646 (1470)
-+++|+++.|.|++|+|||+|..-++..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9969839999947999999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.82 E-value=0.1 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999899999889999984177
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
-.|+|-|..||||||+++.|.+..
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.81 E-value=0.054 Score=27.78 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 93999984799993799988807876898848998897689837777
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g~iayv~Q~~w 669 (1470)
--+++|+|++||||||+.+.+...+... | + +.+.++|+.+
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~-~-v-----~~~iI~~Dsf 43 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIFRRE-G-V-----KAVSIEGDAF 43 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-T-C-----CEEEEEGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-C-C-----CEEEEECCCC
T ss_conf 8899998999780999999999997156-9-9-----7699947778
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.81 E-value=0.065 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799993799988807876
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+.-.++|.|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.80 E-value=0.17 Score=23.87 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||.++|+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.68 E-value=0.077 Score=26.58 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999899999889999984177
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.-+|+|+|++++|||||+++|++.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.66 E-value=0.1 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|+.|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.64 E-value=0.23 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 675189399998479999379998880
Q 000475 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 618 l~i~~G~~vaivG~~GsGKStLl~~il 644 (1470)
+-.-.|.=+.++|++|+||||+...+.
T Consensus 9 ~v~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 9 LVDIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 999999999998089999899999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.63 E-value=0.097 Score=25.82 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799993799988807876
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
...+.++||.||||||+.+++.+++.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999889799889999999999865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.61 E-value=0.13 Score=24.97 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799993799988807
Q 000475 625 KVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilG 645 (1470)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.13 Score=24.88 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|+.|+|||||++.+.+.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.54 E-value=0.12 Score=25.16 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+..++|+|...+|||||++++.+.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.51 E-value=0.14 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18939999989999988999998417
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+..-||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.14 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999937999888078768
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
+|.+++|-|+-||||||+.+.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.44 E-value=0.39 Score=21.18 Aligned_cols=45 Identities=11% Similarity=0.371 Sum_probs=35.3
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 3998899846678999997999999999865993789971491334
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV 1418 (1470)
Q Consensus 1373 r~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1418 (1470)
.+.+++++||+-. +.......+.+.+.+...++.+|+++++++-+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=0.15 Score=24.45 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.15 Score=24.44 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998479999379998880
Q 000475 625 KVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~il 644 (1470)
+++|+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.25 E-value=0.41 Score=21.08 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
-+-+.||.|+|||++++++.+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.06 E-value=0.1 Score=25.69 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 93999998999998899999841777997589996972
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1284 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~d 1284 (1470)
.-+|||+|+.|||||||++.|.+.+...+-++-+=-+|
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD 91 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 32897438999989999999999997569833220377
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.90 E-value=0.13 Score=24.88 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999899999889999984177
Q 000475 1250 IGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1250 vgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
|.|+||+||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.88 E-value=0.13 Score=24.91 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.|||+|++.+|||||+++|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.86 E-value=0.004 Score=36.40 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.0
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 022115885189399999899999889999984177
Q 000475 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1236 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.+++.++.+.+| .+.|+|++||||||++.||.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.72 E-value=0.14 Score=24.65 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999989999988999998417
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.69 E-value=0.16 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.68 E-value=0.15 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
-+.++||+|+|||.|.+++..++.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 699989999888899999862132
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.66 E-value=0.17 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984799993799988807876
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
.+|.++++-|.-||||||+.+.|.-.+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9768999989988869999999999997
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.57 E-value=0.17 Score=24.02 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|+.|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.18 Score=23.72 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.43 E-value=0.14 Score=24.50 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.40 E-value=0.16 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|||+|+..+|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.31 E-value=0.15 Score=24.32 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999899999889999984177
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
..|-++|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.29 E-value=0.19 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.19 E-value=0.18 Score=23.76 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.18 E-value=0.19 Score=23.58 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799993799988807876
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
-.++|-||.||||||..+.|.-++.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.19 Score=23.64 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.12 E-value=0.16 Score=24.26 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|..|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.15 Score=24.45 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
..++|+|+-++|||+||+.++|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.11 E-value=0.12 Score=25.07 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.2 Score=23.43 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.02 E-value=0.19 Score=23.66 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999379998880787
Q 000475 626 VAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~ 647 (1470)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.02 E-value=0.029 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 751893999984799993799988807876898848
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
-++.|.++.+.|+.|||||+|...+........|.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~ 91 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVA 91 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 866633699964887488999999999875489889
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.94 E-value=0.42 Score=20.96 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.92 E-value=0.2 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.88 E-value=0.2 Score=23.44 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 99998479999379998880-7876
Q 000475 625 KVAVCGSVGSGKSSLLSSIL-GEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~il-Ge~~ 648 (1470)
+++++|..|+|||||++.+. |+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.81 E-value=0.21 Score=23.28 Aligned_cols=41 Identities=29% Similarity=0.244 Sum_probs=30.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 18939999989999988999998417779--975899969727
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEP--SGGRILIDGVDI 1285 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p--~~G~I~IDG~dI 1285 (1470)
+.|..|-+.|.+||||||+.+.|...+.. .--.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.24 Score=22.78 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999937999888078768
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.5 Score=20.38 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 9889984667899999799999999986599378997149133
Q 000475 1375 KRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPT 1417 (1470)
Q Consensus 1375 ~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~t 1417 (1470)
.||+++||+-. +..++.+.+.++|.+-.+++..|.++++++.
T Consensus 109 ~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 109 AKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp CEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 40477313442-0000149999999850111104553068655
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.68 E-value=0.18 Score=23.74 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999379998880787
Q 000475 626 VAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+||+|.+.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.16 Score=24.20 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=27.9
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66751893999984799993799988807876
Q 000475 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 617 nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
=+.+.+||..+|.|+.|+|||+|+..+.....
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 25645787556867999887899999999775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.61 E-value=0.21 Score=23.25 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799993799988807
Q 000475 625 KVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilG 645 (1470)
+++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.60 E-value=0.19 Score=23.65 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999989999988999998417
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
-.|||+|..||||||+.+.|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.57 E-value=0.2 Score=23.40 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.56 E-value=0.31 Score=22.02 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=15.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 675189399998479999379998880
Q 000475 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 618 l~i~~G~~vaivG~~GsGKStLl~~il 644 (1470)
+-.-.|.=+.++|++|+||||+...++
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 999999999998089999999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.48 E-value=0.18 Score=23.74 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=27.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----EEEEECCC
Q ss_conf 9998479999379998880787689884899889----76898377
Q 000475 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----KKAYVPQS 667 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~g----~iayv~Q~ 667 (1470)
+.++||+|||||-|.+.|.+++..- .+.+++ ..+||..+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCEEEECCEEECC
T ss_conf 7998999988999999999873898---898625511411111044
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=87.46 E-value=0.18 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.++|+.||||||+.+.+.-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=0.25 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 851893999998999998899999841
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
-+++|+.+-|.|++||||||+..-+..
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.34 E-value=0.18 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.30 E-value=0.14 Score=24.66 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=68.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 51893999998999998899999841777997589996972799997887424189826777776657770386999999
Q 000475 1244 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1323 (1470)
Q Consensus 1244 i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD 1323 (1470)
++.+..|-|.|+.||||||+.+.|..-+ |-..|+.-| -+|..+ ... .....++.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~-~~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSG-SARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHT-CHHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHH-HHHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------899999---876-7651456777763137762
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998491999984001347634579998892599999999987039988998466
Q 000475 1324 QEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383 (1470)
Q Consensus 1324 ~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILiLDEa 1383 (1470)
+.+...+.. .+.......+..+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHH-----HHHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 224410245-----664032235660243---1110157899999983775200003331
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.24 E-value=0.24 Score=22.84 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.|||+|...+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.22 E-value=0.17 Score=23.95 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89399999899999889999984177799758999697279999788742418982677777665777038699999999
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQE 1325 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~e 1325 (1470)
.-..|.|+|+.||||||+...|..-+ |-+.|+.- +-+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000232036
Q ss_pred HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998491999984001347634579998892599999999987039988998466
Q 000475 1326 IWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383 (1470)
Q Consensus 1326 I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILiLDEa 1383 (1470)
+...+...-..... ..-+..+-++ .-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~----~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVK----ANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHC----CCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 78999999886400----3777535404---313689999999861545543125798
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.22 E-value=0.21 Score=23.23 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|.++|+.||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.18 E-value=0.23 Score=23.02 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.17 E-value=0.44 Score=20.80 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999984799993799988807
Q 000475 624 SKVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilG 645 (1470)
.+++++|..|+|||||++.++.
T Consensus 3 ~KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999999598999999972
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.08 E-value=0.13 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+--+++++|+.|+|||||++.+.+.-
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 66899999999998899998873387
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.02 E-value=0.21 Score=23.31 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999937999888078768
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
.++.|.|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.97 E-value=0.52 Score=20.26 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCC
Q ss_conf 939999847999937999888-0787689884
Q 000475 623 GSKVAVCGSVGSGKSSLLSSI-LGEIPRISGA 653 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~i-lGe~~~~~G~ 653 (1470)
--++.++|..|+|||||++-+ .++..|+-|-
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 47799998999988999998950982788886
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.93 E-value=0.2 Score=23.43 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999989999988999998417
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.91 E-value=0.28 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5189399998479999379998880787
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++|+++.|.|+.|+|||+|..-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.90 E-value=0.25 Score=22.64 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 751893999984799993799988807876
Q 000475 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 619 ~i~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
..++|.++++.|+.|||||||.+.++..+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 579982999966877658899999876422
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.81 E-value=0.13 Score=24.83 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCC
Q ss_conf 9999989999988999998417779975899969727999978874241898267777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1306 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~L 1306 (1470)
.|||.|.|||||||+.+.|...+... | -..++|.||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.76 E-value=0.2 Score=23.42 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=55.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999899999889999984177799758999697279999788742418982677777665777038699999999999
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1328 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~eI~~ 1328 (1470)
-+-++||+|+||||+.++|.+.+.. +-+.+++ +++|+... . ..+..+.... ...+....
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~--------d~~~~~~~---~----~~~~~~~~~~----~~~~~~~~ 92 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN--------DTFKQQHP---N----FDELVKLYEK----DVVKHVTP 92 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT--------HHHHTTST---T----HHHHHHHHGG----GCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC--------HHHHHHHC---C----CCCCCHHHHH----HHHHHHHH
T ss_conf 9998897998899999999998651--5489832--------89999852---5----7641133067----89999875
Q ss_pred HHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf 9998491999984001347634579998892599999999987039988998466789999979
Q 000475 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEATASIDTATD 1392 (1470)
Q Consensus 1329 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILiLDEaTSslD~~Td 1392 (1470)
......+......+..+.+ .+.+.+.+-+.-..+++..+ ......+.+..++..-+..-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~ 152 (273)
T d1gvnb_ 93 YSNRMTEAIISRLSDQGYN-LVIEGTGRTTDVPIQTATML---QAKGYETKMYVMAVPKINSYL 152 (273)
T ss_dssp HHHHHHHHHHHHHHHHTCC-EEECCCCCCSHHHHHHHHHH---HTTTCEEEEEEECCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHH---HHCCCEEEEEECCCCCHHHHH
T ss_conf 4321289999999861789-75455556567899999999---876974999744787202222
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.75 E-value=0.21 Score=23.21 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.72 E-value=0.41 Score=21.06 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 939999847999937999888078768988
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~~~~G 652 (1470)
...+.|.||.|+|||++++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.21 Score=23.24 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.63 E-value=0.21 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.25 Score=22.64 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 18939999989999988999998417779
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVEP 1273 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~p 1273 (1470)
+.|-.|+|-|.-||||||+++.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=86.49 E-value=0.26 Score=22.61 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999998999998899999841
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
=||.+||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.44 E-value=0.28 Score=22.36 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.38 E-value=0.25 Score=22.68 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCC
Q ss_conf 999998999998899999841777997589996972799997887424189826777776
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1308 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~ 1308 (1470)
.|||-|.+|||||||...|...+... ......+.+++.|.+...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~----------------~~~~~~v~~iS~DdfY~t 72 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK----------------YGGEKSIGYASIDDFYLT 72 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH----------------HGGGSCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH----------------HCCCCCEEEECCCCCCCC
T ss_conf 99837998788999999999999987----------------277860676356777788
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.37 E-value=0.27 Score=22.48 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.35 E-value=0.24 Score=22.85 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+|.|+|+.||||||..+.|..-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.29 E-value=0.29 Score=22.25 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999899999889999984177
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.-+|||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.20 E-value=0.28 Score=22.30 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984799993799988807876
Q 000475 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 621 ~~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
..+..+.|.|+.|+|||||+..++.+..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.20 E-value=0.16 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.20 E-value=0.24 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
|+.++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.15 E-value=0.23 Score=22.91 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.13 E-value=0.19 Score=23.68 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=26.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 518939999847999937999888078768988489988
Q 000475 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1470)
Q Consensus 620 i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~vi~~~ 658 (1470)
++++..+.++||.|+|||++.+++++++. |.++.++
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in 186 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVN 186 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEE
T ss_conf 99767699989999888999999999859---9789997
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.12 E-value=0.16 Score=24.21 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.10 E-value=0.28 Score=22.32 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799993799988807
Q 000475 625 KVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilG 645 (1470)
+++++|+.|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.10 E-value=0.24 Score=22.81 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
|+.+||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.07 E-value=0.22 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 999984799993799988807876898848
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
.+.|+|++|||||+++..++-..-...+.+
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 589990799968999999999998479988
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.01 E-value=0.34 Score=21.65 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=68.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 8518939999989999988999998-417779975899969727999978874241898267777766577703869999
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQAL-FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1321 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L-~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~ 1321 (1470)
-+++|+.+-|.|++|+|||++..-+ ..........+++...+ .+....+. ...-.+ .
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e---~~~~~~~~------------------~~~~~~-~ 79 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE---ETPQDIIK------------------NARSFG-W 79 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS---SCHHHHHH------------------HHGGGT-C
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC---CCHHHHHH------------------HHHHCC-C
T ss_conf 9969839999947999999999999999998568874201266---79999999------------------999849-9
Q ss_pred CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCC--CCCEEEEECCCCCCCH----H-HHH
Q ss_conf 9999999999849199998400134763457999889259-999999998703--9988998466789999----9-799
Q 000475 1322 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQ-RQLVCLARVLLK--KKRILVLDEATASIDT----A-TDN 1393 (1470)
Q Consensus 1322 sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ-RQll~LARALLr--~~~ILiLDEaTSslD~----~-Td~ 1393 (1470)
..++..+ .-. ..........+.-..++... ..++.-.+..++ +++++++|--++-.+. . ...
T Consensus 80 ~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~ 149 (242)
T d1tf7a1 80 DLAKLVD---EGK-------LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRR 149 (242)
T ss_dssp CHHHHHH---TTS-------EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHH
T ss_pred CHHHHHH---HCC-------HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8489887---143-------024442103354444302458999999999988631222002078899876057267899
Q ss_pred HHHHHHHH-HCCCCEEEEEECCHHH---------H-HHCCEEEEEE
Q ss_conf 99999998-6599378997149133---------4-2029899995
Q 000475 1394 VIQQTIRE-ETSRCTVITVAHRIPT---------V-IDNDLVLVLD 1428 (1470)
Q Consensus 1394 ~Iq~~I~~-~f~~~TVI~IAHRl~t---------i-~~~DrVlVL~ 1428 (1470)
.+.+.++. ...+||++.++|.... . ..+|.++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 150 ELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 9999999998639716884210255422246762335362999988
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=0.36 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 851893999998999998899999841
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
-+++|+.+-|.|++|+|||++..-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.87 E-value=0.25 Score=22.67 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.83 E-value=0.23 Score=22.90 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799993799988807876
Q 000475 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 623 G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
...+.+.||.|+||||+.++++.++.
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 74499987999988899999999987
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.82 E-value=0.31 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.78 E-value=0.34 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 851893999998999998899999841
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.75 E-value=0.27 Score=22.48 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.74 E-value=0.26 Score=22.57 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
|+.+||+.|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.74 E-value=0.31 Score=22.01 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799993799988807
Q 000475 625 KVAVCGSVGSGKSSLLSSILG 645 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilG 645 (1470)
+++|+|+.||||||..+.+..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.71 E-value=0.31 Score=21.94 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.71 E-value=0.22 Score=23.11 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999379998880787
Q 000475 626 VAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~ 647 (1470)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.65 E-value=0.35 Score=21.59 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85189399999899999889999984
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALF 1268 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~ 1268 (1470)
-+++|+.+-|.|++||||||+..-+.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.52 E-value=0.3 Score=22.10 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399999899999889999984177
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.+..+.|+|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.41 E-value=0.29 Score=22.14 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 8518939999989999988999998417779975-89996972
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG-RILIDGVD 1284 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G-~I~IDG~d 1284 (1470)
-++.|..+-|.|++||||||+..-+..-..-..| -++||.-.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.38 E-value=0.31 Score=21.97 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999937999888078768
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
.+++|.|..||||||+++.|...+..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98999899878999999999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.28 E-value=0.34 Score=21.69 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999998999998899999841777
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.28 E-value=0.39 Score=21.19 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999937999888078768
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
-++|+|.+.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=85.27 E-value=0.35 Score=21.57 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+++|-||.||||+|..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.18 E-value=0.32 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.16 E-value=0.37 Score=21.42 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
+|+|-||.||||||+.+.|..-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.15 E-value=0.36 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
+|.|.|+.||||||+.+.|..-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.10 E-value=0.33 Score=21.78 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.04 E-value=0.48 Score=20.55 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999847999937999888078768988
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~G 652 (1470)
+++++|..|+|||||++-+.....+..|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=84.94 E-value=0.31 Score=22.01 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.+.|.|..||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=84.92 E-value=0.33 Score=21.76 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|||+|..||||||..+.|-.+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.74 E-value=0.25 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
+|.|.|+.||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=0.48 Score=20.50 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.72 E-value=0.31 Score=21.98 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=0.31 Score=22.00 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||.+||..|+|||||++.+..-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.68 E-value=0.3 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998479999379998880
Q 000475 625 KVAVCGSVGSGKSSLLSSIL 644 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~il 644 (1470)
-++|+|++|||||||..+|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.37 Score=21.34 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
||.++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.60 E-value=0.31 Score=21.95 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.58 E-value=0.46 Score=20.67 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8518939999989999988999998417779
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1273 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p 1273 (1470)
..++|..|.+.|.=||||||+++.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.56 E-value=0.36 Score=21.44 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999989999988999998417779
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEP 1273 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p 1273 (1470)
.|..|+|-|.-||||||+++.|...++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.54 E-value=0.3 Score=22.12 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
|+.++|..|+|||||++.+..-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.53 E-value=0.057 Score=27.58 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.50 E-value=0.33 Score=21.79 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
-++++|.+++|||||+..|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.50 E-value=0.32 Score=21.86 Aligned_cols=29 Identities=41% Similarity=0.595 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999998999998899999841777997589996
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1281 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~ID 1281 (1470)
.|.++|+.||||||+.+.|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.38 E-value=0.29 Score=22.21 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||.++|..|+|||||++.+..-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.28 E-value=0.35 Score=21.58 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.24 E-value=0.36 Score=21.44 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=61.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999899999889999984177799758999697279999788742418982677777665777038699999999999
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1328 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~eI~~ 1328 (1470)
+|.|+|+.||||||..+.|..-+ |-..|+- -+-+|..+ -++...+.-.+.+.+.-.....|+.+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--C-EEEEECC
Q ss_conf 99984919999840013476345799988925999999999870399--8-8998466
Q 000475 1329 VINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKK--R-ILVLDEA 1383 (1470)
Q Consensus 1329 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~--~-ILiLDEa 1383 (1470)
.+... +........ .-+..+.+ | +.-.+.|.-.+.+.+-... . ++++|.+
T Consensus 69 ~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-412100011-24511101-1--030489999986442105543389962476
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=0.39 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||.++|..|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.03 E-value=0.33 Score=21.81 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-----CCCCCCE-----EEECCEEC
Q ss_conf 39999989999988999998417-----7799758-----99969727
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV-----VEPSGGR-----ILIDGVDI 1285 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl-----~~p~~G~-----I~IDG~dI 1285 (1470)
-||.++|..|+|||||++.+..- +.|+-|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.4 Score=21.13 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
+++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.98 E-value=0.39 Score=21.18 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=25.4
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 022115885189399999899999889999984177
Q 000475 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1236 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
+|++++ .|=-.|+|+|+.++|||||++.|++..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.97 E-value=0.29 Score=22.15 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.|||+|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.94 E-value=0.44 Score=20.77 Aligned_cols=49 Identities=27% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-HHHH
Q ss_conf 893999998999998899999841777997589996972799997-8874
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLR 1294 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR 1294 (1470)
.+..+.+||+||+||||.+-=|...+.-.+-++.+=..|...++- ++|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~ 54 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 54 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
T ss_conf 97799998999998899999999999977990799981366654026676
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.84 E-value=0.45 Score=20.73 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=17.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+...++|+|+.||||||+.+.|.-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.75 E-value=0.42 Score=20.96 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998479999379998880--78768988
Q 000475 625 KVAVCGSVGSGKSSLLSSIL--GEIPRISG 652 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~il--Ge~~~~~G 652 (1470)
++.++|..|+|||||++-+- -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.74 E-value=0.53 Score=20.20 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999998999998899999841777
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
-+++|||+.-+|||||+++|.+--.
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 2789986675443555425426615
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.73 E-value=0.36 Score=21.46 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999998999998899999841
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.70 E-value=0.36 Score=21.44 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=0.37 Score=21.40 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+++++|..|+|||||+..+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.36 E-value=0.33 Score=21.76 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999989999988999998417779975899969
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1282 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG 1282 (1470)
+.|-++|+.||||||+.+.|..-+ |--++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf 988998899998899999999994----9987865
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.33 E-value=0.38 Score=21.26 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999989999988999998417
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
||.++|..|+|||||++.+..-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.30 E-value=0.42 Score=20.96 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999899999889999984177
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV 1271 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~ 1271 (1470)
.|+|-||.||||||+.+.|..-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.39 Score=21.21 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=27.6
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 58851893999998999998899999841777
Q 000475 1241 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1241 s~~i~~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
=+.+-.|++++|+|+.|+|||+|+..+.+-..
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 25645787556867999887899999999775
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.39 Score=21.21 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
|+.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.18 E-value=0.63 Score=19.62 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=25.4
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0221158851893999998999998899999841
Q 000475 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1236 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
.+++-.+. -.|.-|.|+|++|+||||+...|.+
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999999-9999999980899998999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.18 E-value=0.49 Score=20.46 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 93999998999998899999841777997589996972799997887424189826777776657770386999999999
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEI 1326 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~sD~eI 1326 (1470)
.-+|.|+|+.||||||+...|..-+ |-..|+-- +-+|..+ ++...+.-.+.+.++......|+.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~----g~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~~v~~~~~ 70 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF----ELKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGKLIPDDVM 70 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB----CCEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 2169998899998799999999997----98687189-------9999998----7401566899987636641330344
Q ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999998491999984001347634579998892599999999987039988998466
Q 000475 1327 WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILVLDEA 1383 (1470)
Q Consensus 1327 ~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILiLDEa 1383 (1470)
.+.++.. + ... ..-...+ + | +-.-..|.-.+.+ .+.-..++.||-+
T Consensus 71 ~~l~~~~-~----~~~-~~~~~il-d-G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 71 TRLVLHE-L----KNL-TQYNWLL-D-G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHH-H----HHH-TTSCEEE-E-S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHH-H----HHH-HHCCCCC-C-C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 5445554-4----212-1058424-4-5--2100067887631-5753299997244
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.98 E-value=0.43 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999379998880787
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
..++++|+.||||||..+.|.-.+
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998799999899999999986
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.98 E-value=0.35 Score=21.53 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999998999998899999841-----77799758
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR-----VVEPSGGR 1277 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r-----l~~p~~G~ 1277 (1470)
||.++|..|+|||||++.+.. -++|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.92 E-value=0.38 Score=21.26 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.80 E-value=0.37 Score=21.41 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
|+.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.70 E-value=0.4 Score=21.15 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999989999988999998417
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
-||.++|.+|+|||||++.+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.57 E-value=0.25 Score=22.73 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 399889984667899999799999999986599378997149133420
Q 000475 1373 KKKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVID 1420 (1470)
Q Consensus 1373 r~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~ 1420 (1470)
.+.+|+++||.- .+.......+.+.+......+..|.++++.+.+..
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 872288614344-31214789876411247764478861487665657
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.56 E-value=0.25 Score=22.71 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=26.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 893999998999998899999841777997589996972
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1284 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~d 1284 (1470)
|+.-+.++||||+|||.|.++|.+.... --+.+|+-+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCC
T ss_conf 9866999899998888999998621322--100034433
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.51 E-value=0.5 Score=20.37 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=29.8
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 66751893999984799993799988807876898848
Q 000475 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1470)
Q Consensus 617 nl~i~~G~~vaivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1470)
-+.+.+||+.+|.|+.|+|||+|+.-+.--.......+
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v 99 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 99 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSE
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 25636788777667999898999999999887617996
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.51 E-value=0.43 Score=20.91 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
+|.++|..||||||+.+.|...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.50 E-value=0.5 Score=20.35 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.|+|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.43 E-value=0.85 Score=18.64 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999379998880787
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.-..+.|+.|+||+++...+..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i 39 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYV 39 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98559988989988899999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.40 E-value=0.55 Score=20.09 Aligned_cols=22 Identities=18% Similarity=0.441 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999937999888078
Q 000475 625 KVAVCGSVGSGKSSLLSSILGE 646 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe 646 (1470)
.+.+.|+.||||||+.+.|.-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.38 E-value=0.44 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
|+.++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.26 E-value=0.46 Score=20.64 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999379998880787
Q 000475 626 VAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 626 vaivG~~GsGKStLl~~ilGe~ 647 (1470)
+.+.||.|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=82.25 E-value=0.86 Score=18.59 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987039988998466789999979999999998
Q 000475 1368 ARVLLKKKRILVLDEATASIDTATDNVIQQTIRE 1401 (1470)
Q Consensus 1368 ARALLr~~~ILiLDEaTSslD~~Td~~Iq~~I~~ 1401 (1470)
.+..+++-+++|+||+= ..|..++..+...++.
T Consensus 88 ~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~ 120 (136)
T d1a1va1 88 GGCSGGAYDIIICDECH-STDATSILGIGTVLDQ 120 (136)
T ss_dssp TGGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHH
T ss_pred CCHHHHCCCEEEEECCC-CCCHHHHHHHHHHHHH
T ss_conf 53024159999982555-3588789999999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.21 E-value=0.43 Score=20.91 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=20.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1893999998999998899999841
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
+..=||.++|++|+|||||++.+.+
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9668999999999988999988733
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.15 E-value=0.43 Score=20.90 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=89.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCC-CCCCCCHHHHC-C-CCC-CC
Q ss_conf 999998999998899999841---77799758999697279999788742418982677-77766577703-8-699-99
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR---VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNL-D-PLE-QH 1321 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r---l~~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQdp-~LF~gTIR~NL-d-p~~-~~ 1321 (1470)
-|||+|..|||||||+.+|+- ..+ ..|++. +|..+.+....+..+.+++-+.-- +-+.+. +-|+ | |+. ++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~-~~n~iDtPG~~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDH-RINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTE-EEEEECCCSSSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCE-EEEEECCCCHHHH
T ss_conf 999995898998999999999648534-023365-1846985658887518860011234315983-8999527860226
Q ss_pred CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHH
Q ss_conf 9999999999849199998400134763457999889259999999998703998899---8466789999979999999
Q 000475 1322 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV---LDEATASIDTATDNVIQQT 1398 (1470)
Q Consensus 1322 sD~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILi---LDEaTSslD~~Td~~Iq~~ 1398 (1470)
.. |...++..+... -.|-+.....-.+-++..-.|+. .+-|+|++ ||-+-+..+. +.+.
T Consensus 85 ~~-e~~~~l~~~D~a-----------vlVvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~~~-----~l~e 146 (276)
T d2bv3a2 85 TI-EVERSMRVLDGA-----------IVVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADLWL-----VIRT 146 (276)
T ss_dssp ST-THHHHHHHCCEE-----------EEEEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCHHH-----HHHH
T ss_pred HH-HHHHHHHHHHHE-----------EEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCH-----HHHH
T ss_conf 99-999999963005-----------77322567744669999999998-599979998644565431212-----6899
Q ss_pred HHHHCC-CCEEEEEECCHH----HHHH--CCEEEEEEC---CEEEEECCHHHHHHCC
Q ss_conf 998659-937899714913----3420--298999959---8798945934786119
Q 000475 1399 IREETS-RCTVITVAHRIP----TVID--NDLVLVLDE---GKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1399 I~~~f~-~~TVI~IAHRl~----ti~~--~DrVlVL~~---G~ivE~g~p~~Ll~~~ 1445 (1470)
|++.+. ++..+.+-=... -+.| ..+.+.-++ ++..+..-|+++.+..
T Consensus 147 i~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~ 203 (276)
T d2bv3a2 147 MQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQA 203 (276)
T ss_dssp HHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHH
T ss_pred HHHHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHHH
T ss_conf 999859971789833457875138850561089985588886540025856777777
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.13 E-value=0.45 Score=20.73 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.11 E-value=0.58 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999998999998899999841777
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
.+-+.||+|+||||++.++.+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.06 E-value=0.46 Score=20.65 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.93 E-value=0.44 Score=20.84 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.|+|..|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.92 E-value=0.47 Score=20.59 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999937999888078768
Q 000475 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1470)
Q Consensus 624 ~~vaivG~~GsGKStLl~~ilGe~~~ 649 (1470)
++++|-|..||||||+++.|.-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=81.90 E-value=0.51 Score=20.30 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89399999899999889999984177799758999697279999
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1289 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~I~IDG~dI~~i~ 1289 (1470)
+...+.+||+||+||||.+-=|...+.-..-+|.+=..|...++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g 53 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA 53 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99899998999998899999999999977990699960133420
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=0.35 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.70 E-value=0.34 Score=21.63 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799993799988807876
Q 000475 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 622 ~G~~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
+.-+++++|+.|+|||||++.+.+...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 747999999999878999999844888
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.57 E-value=0.9 Score=18.42 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999984799993799988807876898
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~~ 651 (1470)
.+.|-|+.|+||||+++.+...+....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~ 34 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGS 34 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999988866789999999999865699
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.52 E-value=0.46 Score=20.67 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.50 E-value=0.46 Score=20.64 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.49 E-value=0.5 Score=20.41 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.28 E-value=0.51 Score=20.35 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.+||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.21 E-value=0.48 Score=20.49 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.21 E-value=0.58 Score=19.91 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999379998880787
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~ 647 (1470)
.+.|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.20 E-value=0.48 Score=20.51 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
Q ss_conf 89399999899999889999984177------------7997589996
Q 000475 1246 GEKKIGVVGRTGSGKSTLIQALFRVV------------EPSGGRILID 1281 (1470)
Q Consensus 1246 ~GekvgIVGrTGSGKSTLi~~L~rl~------------~p~~G~I~ID 1281 (1470)
.+-|+||||...+|||||+++|.+-- +|.-|.+.+.
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 873799978999989999999977898774789966703876899606
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.19 E-value=0.57 Score=19.93 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=45.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 85189399999899999889999984177799758-99969727999978874241898267777766577703869999
Q 000475 1243 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR-ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1321 (1470)
Q Consensus 1243 ~i~~GekvgIVGrTGSGKSTLi~~L~rl~~p~~G~-I~IDG~dI~~i~l~~LRs~isiIPQdp~LF~gTIR~NLdp~~~~ 1321 (1470)
-++.|..+-|.|++|+||||+..-+..-..-..|. |+||.-.- ++...++ ++++=| +|+-.....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~--~~~e~a~-~~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA--LDPDYAK-KLGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC--CCHHHHH-HHTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--CCHHHHH-HHCCCH-----------HHEEEECCC
T ss_conf 86663369996488748899999999987548988999989766--7999999-809988-----------995896699
Q ss_pred CHHHHHHHHH
Q ss_conf 9999999999
Q 000475 1322 SDQEIWEVIN 1331 (1470)
Q Consensus 1322 sD~eI~~aL~ 1331 (1470)
+.|++.+.++
T Consensus 122 ~~E~~~~~~~ 131 (269)
T d1mo6a1 122 TGEQALEIAD 131 (269)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 8999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=81.10 E-value=0.76 Score=19.01 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=27.3
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0221158851893999998999998899999841
Q 000475 1236 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1236 vLk~is~~i~~GekvgIVGrTGSGKSTLi~~L~r 1269 (1470)
.+++-...+ .|.-+.|.|++|+||||+...|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.96 E-value=0.54 Score=20.13 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999989999988999998417
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
=|+.++|..|+|||||++.+..-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.93 E-value=0.53 Score=20.21 Aligned_cols=21 Identities=38% Similarity=0.771 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.57 E-value=0.77 Score=18.95 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999998999998899999841777
Q 000475 1245 PGEKKIGVVGRTGSGKSTLIQALFRVVE 1272 (1470)
Q Consensus 1245 ~~GekvgIVGrTGSGKSTLi~~L~rl~~ 1272 (1470)
+|.=.|||+|.-.+|||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.53 E-value=0.35 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999998999998899999841
Q 000475 1249 KIGVVGRTGSGKSTLIQALFR 1269 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~r 1269 (1470)
||.++|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.50 E-value=0.52 Score=20.24 Aligned_cols=176 Identities=24% Similarity=0.322 Sum_probs=98.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCCEEECCC-CCCCCCCHHHHC-C-CCC-CCC
Q ss_conf 99999899999889999984177--79975899969727999978874241898267-777766577703-8-699-999
Q 000475 1249 KIGVVGRTGSGKSTLIQALFRVV--EPSGGRILIDGVDISMIGLQDLRSRLSIIPQD-PMLFQGTVRTNL-D-PLE-QHS 1322 (1470)
Q Consensus 1249 kvgIVGrTGSGKSTLi~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LRs~isiIPQd-p~LF~gTIR~NL-d-p~~-~~s 1322 (1470)
-|+|+|..|+|||||+.+|+..- ....|++. +|..+.+.....-.+.+++-+.- ++.+.+. +-|+ | |+. ++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~-~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH-RVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTE-EEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCC-CEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-2211356269888738768751022223432-10688068155433
Q ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf 999999999849199998400134763457999889259999999998703998899---84667899999799999999
Q 000475 1323 DQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCLARVLLKKKRILV---LDEATASIDTATDNVIQQTI 1399 (1470)
Q Consensus 1323 D~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQRQll~LARALLr~~~ILi---LDEaTSslD~~Td~~Iq~~I 1399 (1470)
. |...++..+... -.|-+.-+....+-++.+-.++. .+.|.+++ +|.+ + |.. ..+ +.+
T Consensus 82 ~-e~~~al~~~D~a-----------vlvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~~l-~~~ 142 (267)
T d2dy1a2 82 G-EIRGALEAADAA-----------LVAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--ALL-EDL 142 (267)
T ss_dssp H-HHHHHHHHCSEE-----------EEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--HHH-HHH
T ss_pred H-HHHHHHCCCCCE-----------EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--HHH-HHH
T ss_conf 5-565431246733-----------89842357742115788776554-044310133320222-2--101--234-468
Q ss_pred HHHCCCCEEEEEECC----HHHHHH--CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 986599378997149----133420--2989999598798945934786119
Q 000475 1400 REETSRCTVITVAHR----IPTVID--NDLVLVLDEGKVLEYDSPRQLLEDN 1445 (1470)
Q Consensus 1400 ~~~f~~~TVI~IAHR----l~ti~~--~DrVlVL~~G~ivE~g~p~~Ll~~~ 1445 (1470)
++.+..+.-+.+-.+ ...+.| ..+.+..++|.-.+..-|.++.+..
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~ 194 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERV 194 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHH
T ss_pred HHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHHH
T ss_conf 8874658676860025883268762476548996189874540777789999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=80.45 E-value=0.57 Score=19.97 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 3999998999998899999841-----7779975
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1276 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~r-----l~~p~~G 1276 (1470)
-||.++|..|+|||||++.+.. -++|+.|
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~ 38 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 6999999899588999999972999865477534
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.43 E-value=0.35 Score=21.58 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799993799988807876
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~ 648 (1470)
-+.+.||.|+||||+.+++.+++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=80.42 E-value=0.53 Score=20.22 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999989999988999998417
Q 000475 1247 EKKIGVVGRTGSGKSTLIQALFRV 1270 (1470)
Q Consensus 1247 GekvgIVGrTGSGKSTLi~~L~rl 1270 (1470)
.=||.++|+.|+|||||++.+..-
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 479999999998789999998448
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.38 E-value=0.57 Score=19.98 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 3999998999998899999841-----7779975
Q 000475 1248 KKIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1276 (1470)
Q Consensus 1248 ekvgIVGrTGSGKSTLi~~L~r-----l~~p~~G 1276 (1470)
=|+.++|.+|+|||||++.+.. .++|+.|
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 7999999899598999999970988854576312
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.34 E-value=0.35 Score=21.59 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998479999379998880787689
Q 000475 625 KVAVCGSVGSGKSSLLSSILGEIPRI 650 (1470)
Q Consensus 625 ~vaivG~~GsGKStLl~~ilGe~~~~ 650 (1470)
-+.+.||.|+||||+.+++..++...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
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| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.29 E-value=0.81 Score=18.76 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=18.7
Q ss_pred EECCCEEEEECCCCCCHHHHH-HHHHCCC
Q ss_conf 518939999989999988999-9984177
Q 000475 1244 FPGEKKIGVVGRTGSGKSTLI-QALFRVV 1271 (1470)
Q Consensus 1244 i~~GekvgIVGrTGSGKSTLi-~~L~rl~ 1271 (1470)
++.|+.+-|+++||||||... .++....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87599679981799885599999999975
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| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.19 E-value=0.34 Score=21.66 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 998899846678999997999999999865993789971491334
Q 000475 1374 KKRILVLDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV 1418 (1470)
Q Consensus 1374 ~~~ILiLDEaTSslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1418 (1470)
+.+++++||+-.- -......+...+......+-+++++++.+-+
T Consensus 108 ~~~viiiDe~d~l-~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 151 (237)
T d1sxjd2 108 PYKIIILDEADSM-TADAQSALRRTMETYSGVTRFCLICNYVTRI 151 (237)
T ss_dssp SCEEEEETTGGGS-CHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCEEEEEECCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7369999551336-7777888763012222333321224664222
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