Citrus Sinensis ID: 000500

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460

MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKTTERPSPTSMEIDSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQILSTQTSPPLEQPMPNEDKELQPEIQSTSAEPSLPQTERGVNKLDAVVETEVKGTPESEPTVEGSKASSKNPAVADVDSSPADPTSLLGKTGTGMEMAEAKNDADIKTDDKPTGKENSQRDKTGVIVLDD

cHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccHHHccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEEEccccccccEEEcHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHcccccccEEcEEEEEEccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcHHHHHHHHHcccccccccEEEEEcccccccccccHHHHHHccccccEEEEccccccccHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccHHHccHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHcHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHcccccccHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEccc

cccHHHHHHHcccccccEccccccccHHHHccccccccccccccccccccHHHHHHEccccEEEEEccccccEEEEEccccccccccccccccccccccccHEEEEEcccccccccccccccccccccccEEHEEEEccccEEEcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccHcccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEcccccccccccccEEEEEcccccEEEEEEEEEEHHHHHccHHHHccccEEEEEEccHHHccccHHHHHHHHHHcccccEEEEccccHHcHHHHHHHHHHHccHHHcccHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHcccccccEEEEEEEccccccEEcccccEEEEEEccccccHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHcHcEEEEEccccccccHHHHHHHHHHcHHHHHHccccccccccEEEccHHHHHHHHHHccccccccccccccccHHHHHHEEEEEEEEccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHcccccEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHccHcccHHHHHcHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccHHHHEccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEcc

MSSLVERLRvrsdrkpiyqldesdddadfeqgkpgttveKFERIVRidakddscqacgesenlmscdtctyayhakclvpplkappsgswrcpecvsplndidkildcemrptvagdsdvsklgskQIFVKQYLVKWKGLSYLHCTWVPEKEFLKafksnprlrtkVNNFHrqmssnnnaeedfvairpewTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQsrshrsscnkqksspqdvtestkkpkefqqyehspeflsggslhpyqleglnflrfswskQTHVILADEMGLGKTIQSIAFLASLFgerisphlvvaplstlRNWEREFATWAPQMNVVMYVGTSQARNIIREYefyfpknpkkvkkkksgqvvseskqdriKFDVLLTSYEMinldsaslkpikwqcmivdeghrlknkdsKLFSSLKQYSTRHRVlltgtplqnNLDELFMLMHFldagkfgslEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDvmkelppkkeLILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCchpymlegvepdiedTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYeridgkvggaeRQIRIDrfnaknssrFCFLLSTragglginlatadtviiydsdwnphADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGskelfadendeggksrqihyddaaidrlldrdqvgdeeaslddedeDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENkssmsnserSSYWEELLKDRYEVHKVeefnalgkgkrsrkQMVSVEeddlagledvssegeddnyeadltdgdttssgtqpgrkpnkkrsrvdsmeppplmegegrsfrvlgfsQNQRAAFVQILMRFgvgdfdwkeftprLKQKSYEEIREYGILFLTHiteditdsptfsdgvpkeglrIQDVLVRIAVLLLIRDKVKflsqkpgtplftddiylrypglrggkfwKEEHDSLLLRAVLKHGYGrwqaivddkdLKVQEVICQElnlpfinlpvpgassqapngansanpealqmqgnstgndsaaagvqgttdaanqaqvyqdssvlyhFRDMQRRQVEFIKKRVLLLEKGLNAeyqkeyfgddvksneipseepeserktterpsptsmeidsQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTsltsqpasAQLRTNLQLLETLCEDVNQIlstqtsppleqpmpnedkelqpeiqstsaepslpqtergvnKLDAVVEtevkgtpeseptvegskassknpavadvdsspadptsllgktgtgmemaeakndadiktddkptgkensqrdktgvivldd

msslverlrvrsdrkpiyqldesdddadfeqgkpgttvekferiVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTvagdsdvsklgskQIFVKQYLVKWKGLSYLHCTWVPEKEFLKafksnprlRTKVNNFhrqmssnnnaeedfvairpEWTTVDRILacrgeddekeYLVKYKELSYDECYWEYESDISAFQPEIERFIKIqsrshrsscnkqksspqdvtestkkpKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYefyfpknpkkvkkkksgqvvseskqdrikfdVLLTSYEMInldsaslkpiKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKdvmkelppkkelilRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIdgkvggaerqiridrfnaknssrFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAhrlgqtnkvMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRlkaqninqeelDDIIRYGSKELFadendeggksrqihyddAAIDRLLDRDQVGDEeaslddededgFLKAFKVANFEYIEEVEAAAEEEAQKLAaenkssmsnserSSYWEELLKDRYEVHKVEefnalgkgkrsrkqmvsveeddlagledvssegeddnyeadltdgdttssgtqpgrkpnkkrsrvdsmeppplmegegRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKvkflsqkpgtplftddiylrYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNaeyqkeyfgddvksneipseepeserktterpsptsmeidSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTsltsqpasaQLRTNLQLLETLCEDVNQILSTqtsppleqpmpNEDKELQPEIQStsaepslpqtergvNKLDAVVETevkgtpeseptvegskassknpavadvdsspadptsllgktgtgmemaeakndadiktddkptgkensqrdktgvivldd

MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPknpkkvkkkksgqvvseskQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYddaaidrlldrdQVGdeeaslddededGFLKAFKVANFeyieeveaaaeeeaqklaaeNKssmsnserssYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLtdgdttssgtQPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDvlvriavlllirDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNeipseepeseRKTTERPSPTSMEIDSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQILSTQTSPPLEQPMPNEDKELQPEIQSTSAEPSLPQTERGVNKLDAVVETEVKGTPESEPTVEGSKASSKNPAVADVDSSPADPTSLLGKTGTGMEMAEAKNDADIKTDDKPTGKENSQRDKTGVIVLDD

***************************************KFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKS***********************DFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI*****************************************GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFP*********************RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN****ISRLHRMLAPHLLRRVKKDVM******KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI**************GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELF******************************************GFLKAFKVANFEYIEEV***************************WEELLKDRYEVHKV*********************************************************************************FRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPV**********************************************VYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFG*******************************************IKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSL********LRTNLQLLETLCEDVNQI*********************************************************************************************************************************

********************************************************CGESENLMSCDTCTYAYHAKCLVP****PPS*SWRCPECVSPLNDIDKILDC*******************IFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRT***************EEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK********************************YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK*****VSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQI********ISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHL*****************IIRYGSKELF*************HYDDAAIDRLLDRD*******************AFKVANFEYIEEVEAAAEEE**************SERSSYWEEL**********************************************************************************PLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRL******EIREYGILFLTHITEDITDSPTFSDGVPK**LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELN*****************************************************************************************************************************************************************************************************************************************************************************************************************************************GVIVLD*

MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ********************************HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNP****************QDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQV**********DEDGFLKAFKVANFEYIEEVEAAAEEEAQK****************YWEELLKDRYEVHKVEEFNAL************VEEDDLAGLEDVSSEGEDDNYEADLTDG**********************MEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGA***********NPEALQMQGNSTGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSN**********************EIDSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQILSTQTSPPLEQPMPNEDKELQPEIQSTSAEPSLPQTERGVNKLDAVVET********************************DPTSLLGKTGTGMEMAEAKNDADIK*************DKTGVIVLDD

***********SDRK********************************DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPT*************QIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS*N*NAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS************************KEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGD******DEDEDGFLKAFKVANFEYIEEV********QKL********SNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEE************************************************EPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP*************************************************SSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDD*********************SPTSMEIDSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQILS**************************************NKLDAVVETEVKGT*************************************TGMEMAEAKNDADIKTDDKPTG**NSQRDKTGVIVLDD

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYxxxxxxxxxxxxxxxxxxxxxSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKTTERPSPTSMEIDSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQILSTQTSPPLEQPMPNEDKELQPEIQSTSAEPSLPQTERGVNKLDAVVETEVKGTPESEPTVEGSKASSKNPAVADVDSSPADPTSLLGKTGTGMEMAEAKNDADIKTDDKPTGKENSQRDKTGVIVLDD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1460	2.2.26 [Sep-21-2011]
Q9S775		1384	CHD3-type chromatin-remod	yes	no	0.919	0.969	0.702	0.0
Q12873		2000	Chromodomain-helicase-DNA	yes	no	0.667	0.487	0.440	0.0
Q6PDQ2		1915	Chromodomain-helicase-DNA	no	no	0.673	0.513	0.445	0.0
Q14839		1912	Chromodomain-helicase-DNA	no	no	0.673	0.514	0.445	0.0
Q8TDI0		1954	Chromodomain-helicase-DNA	no	no	0.669	0.5	0.414	0.0
O97159		1982	Chromodomain-helicase-DNA	yes	no	0.665	0.490	0.412	0.0
Q22516		1787	Chromodomain-helicase-DNA	yes	no	0.680	0.555	0.415	0.0
G5EBZ4		1829	Protein let-418 OS=Caenor	no	no	0.680	0.542	0.413	0.0
O16102		892	Chromodomain-helicase-DNA	no	no	0.547	0.896	0.436	0.0
Q7KU24		1883	Chromodomain-helicase-DNA	no	no	0.476	0.369	0.414	1e-157

>sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1	Back alignment and function desciption

 Score = 1941 bits (5028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 974/1387 (70%), Positives = 1146/1387 (82%), Gaps = 45/1387 (3%)

Query: 1    MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGES 60
            MSSLVERLR+RSDRKP+Y LD+SDDD      K   T E+ E IVR DAK+++CQACGES
Sbjct: 1    MSSLVERLRIRSDRKPVYNLDDSDDDDFVP--KKDRTFEQVEAIVRTDAKENACQACGES 58

Query: 61   ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDV 120
             NL+SC+TCTYA+HAKCLVPPLK     +WRCPECVSPLN+IDKILDCEMRPT + +   
Sbjct: 59   TNLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDCEMRPTKSSEQGS 118

Query: 121  SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNA 180
            S    K IFVKQYLVKWKGLSYLHC+WVPEKEF KA+KSN RL+T+VNNFHRQM S NN+
Sbjct: 119  SDAEPKPIFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNS 178

Query: 181  EEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240
            E+DFVAIRPEWTTVDRILACR ED E EYLVKYKELSYDECYWE ESDIS FQ EI+RF 
Sbjct: 179  EDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFK 238

Query: 241  KIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFS 300
             + SR+ RS         +DV +  + P++FQQ++H+PEFL G  LHPYQLEGLNFLRFS
Sbjct: 239  DVNSRTRRS---------KDV-DHKRNPRDFQQFDHTPEFLKG-LLHPYQLEGLNFLRFS 287

Query: 301  WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMN 360
            WSKQTHVILADEMGLGKTIQSIA LASLF E + PHLV+APLSTLRNWEREFATWAPQMN
Sbjct: 288  WSKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQMN 347

Query: 361  VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420
            VVMY GT+QAR +IRE+EFY  K+ KK+KKKKSGQ+ SESKQ RIKFDVLLTSYEMINLD
Sbjct: 348  VVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLD 407

Query: 421  SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF 480
            SA LKPIKW+CMIVDEGHRLKNKDSKLFSSL QYS+ HR+LLTGTPLQNNLDELFMLMHF
Sbjct: 408  SAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHF 467

Query: 481  LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540
            LDAGKFGSLEEFQEEFKDINQEEQISRLH+MLAPHLLRRVKKDVMK++PPKKELILRV+L
Sbjct: 468  LDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDL 527

Query: 541  SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF 600
            SS QKEYYKAI TRNYQ+LT++GGAQISL N++MELRK+CCHPYMLEGVEP I D NE+F
Sbjct: 528  SSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAF 587

Query: 601  KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660
            KQLLES GKLQLLDKMMVKLKEQGHRVLIY+QFQHMLDLLEDY T KKWQYERIDGKVGG
Sbjct: 588  KQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGG 647

Query: 661  AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 720
            AERQIRIDRFNAKNS++FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
Sbjct: 648  AERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 707

Query: 721  LGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 780
            LGQTNKVMI+RLI RG+IEERMMQ+TKKKMVLEHLVVG+LK QNINQEELDDIIRYGSKE
Sbjct: 708  LGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKE 767

Query: 781  LFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEE 840
            LFA E+DE GKS +IHYDDAAID+LLDRD V  EE S+DDE+E+GFLKAFKVANFEYI+E
Sbjct: 768  LFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYIDE 827

Query: 841  VEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 900
             EAAA  EAQ++AAE+KSS  NS+R+SYWEELLKD++E+H+ EE NALGK KRSRKQ+VS
Sbjct: 828  NEAAA-LEAQRVAAESKSSAGNSDRASYWEELLKDKFELHQAEELNALGKRKRSRKQLVS 886

Query: 901  VEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE 960
            +EEDDLAGLEDVSS+G D++YEA+ TDG+    G Q GR+P +++ R D++EP PLMEGE
Sbjct: 887  IEEDDLAGLEDVSSDG-DESYEAESTDGEAAGQGVQTGRRPYRRKGR-DNLEPTPLMEGE 944

Query: 961  GRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITED 1020
            GRSFRVLGF+Q+QRA FVQ LMR+G G+FDWKEF PRLKQK++EEI EYGILFL HI E+
Sbjct: 945  GRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEYGILFLKHIAEE 1004

Query: 1021 I-TDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLR 1079
            I  +SPTFSDGVPKEGLRI+DVLVRIA+L+L+++KVKF+   PG P+F   I  R+PGLR
Sbjct: 1005 IDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPGLR 1064

Query: 1080 GGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP-GASSQ 1138
             GK WKEEHD +++RAVLKHGYGRWQAIVDDK+L +QE+IC+ELN P I+L     A  Q
Sbjct: 1065 SGKIWKEEHDKIMIRAVLKHGYGRWQAIVDDKELGIQELICKELNFPHISLSAAEQAGLQ 1124

Query: 1139 APNGANSANPEALQMQGNS---TGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRR 1195
              NG+  +NP A   Q      TGN++A         +A+ AQV    + ++++RDMQRR
Sbjct: 1125 GQNGSGGSNPGAQTNQNPGSVITGNNNA---------SADGAQV----NSMFYYRDMQRR 1171

Query: 1196 QVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKTTERPSPTSMEIDSQM 1255
             VEF+KKRVLLLEK +N EY +EY+G    S+ IP+EEPE+E K  +    + +E+D +M
Sbjct: 1172 LVEFVKKRVLLLEKAMNYEYAEEYYGLG-GSSSIPTEEPEAEPKIADTVGVSFIEVDDEM 1230

Query: 1256 VDQLPKLEAI--KEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQ 1313
            +D LPK + I  +EI  AA D++  R+ +AQHYN+MCK+L+EN  E V+  + +QP S +
Sbjct: 1231 LDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPSTK 1290

Query: 1314 LRTNLQLLETLCEDVNQILSTQTSPPLEQPMPNEDKELQPEIQSTSAEPSLPQTE---RG 1370
            +  + + L+++  ++N ILS  +    +Q   +ED + +P++ +   + +  +T+    G
Sbjct: 1291 VNESFRALKSINGNINTILSITS----DQSKSHED-DTKPDLNNVEMKDTAEETKPLRGG 1345

Query: 1371 VNKLDAV 1377
            V  L+ V
Sbjct: 1346 VVDLNVV 1352

Chromatin remodeling factor that represses the expression of embryonic trait genes (such as NFYB9/LEC1) upon and after seed germination and thus enables the developmental switch to post-germinative growth. Silences some MADS-box proteins such as PHE1 and PHE2. Plays a role during carpel differentiation.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|Q12873\|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3	Back alignment and function description

>sp\|Q6PDQ2\|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1	Back alignment and function description

>sp\|Q14839\|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2	Back alignment and function description

>sp\|Q8TDI0\|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1	Back alignment and function description

>sp\|O97159\|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2	Back alignment and function description

>sp\|Q22516\|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2	Back alignment and function description

>sp\|G5EBZ4\|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1	Back alignment and function description

>sp\|O16102\|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3	Back alignment and function description

>sp\|Q7KU24\|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1460
255548778		1470	chromodomain helicase DNA binding protei	0.992	0.985	0.785	0.0
359475843		1472	PREDICTED: CHD3-type chromatin-remodelin	0.994	0.986	0.776	0.0
296082077		1356	unnamed protein product [Vitis vinifera]	0.915	0.985	0.830	0.0
356507366		1441	PREDICTED: CHD3-type chromatin-remodelin	0.932	0.945	0.801	0.0
356515042		1440	PREDICTED: CHD3-type chromatin-remodelin	0.919	0.932	0.808	0.0
449485189		1474	PREDICTED: LOW QUALITY PROTEIN: CHD3-typ	0.993	0.983	0.738	0.0
449455537		1474	PREDICTED: CHD3-type chromatin-remodelin	0.995	0.986	0.739	0.0
224092566		1340	chromatin remodeling complex subunit [Po	0.904	0.985	0.802	0.0
224143281		1334	chromatin remodeling complex subunit [Po	0.886	0.970	0.795	0.0
357466053		1483	Chromatin remodeling complex subunit [Me	0.917	0.902	0.749	0.0

>gi\|255548778\|ref\|XP_002515445.1\| chromodomain helicase DNA binding protein, putative [Ricinus communis] gi\|223545389\|gb\|EEF46894.1\| chromodomain helicase DNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2330 bits (6039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1163/1481 (78%), Positives = 1285/1481 (86%), Gaps = 32/1481 (2%)

Query: 1    MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGES 60
            MSSLVERLRVRS+R+P+Y LDESDD+ DF  GKPG + EK ERIVR DAK D CQ+CGE+
Sbjct: 1    MSSLVERLRVRSERRPVYNLDESDDE-DFVSGKPGKSQEKIERIVRDDAKADCCQSCGEN 59

Query: 61   ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDV 120
             +L+SC+TCTY+YH KCL+PP+KA    +WRCPECVSPLNDIDKILDCEMRPTVAGD+DV
Sbjct: 60   GDLLSCETCTYSYHPKCLLPPIKATLPSNWRCPECVSPLNDIDKILDCEMRPTVAGDNDV 119

Query: 121  SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNA 180
            SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM SNNNA
Sbjct: 120  SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMDSNNNA 179

Query: 181  EEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240
            E+DFVAIRPEWTTVDRILACRG+DDEKEY VKYKEL YDECYWE+ESDISAFQPEIE+F 
Sbjct: 180  EDDFVAIRPEWTTVDRILACRGDDDEKEYFVKYKELPYDECYWEFESDISAFQPEIEKFN 239

Query: 241  KIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFS 300
            +IQS+S +   NK KSS +D T+S KK KEFQQYE SPEFL+GGSLHPYQLEGLNFLRFS
Sbjct: 240  RIQSKSRK--LNKHKSSLKDATDSKKKSKEFQQYEQSPEFLTGGSLHPYQLEGLNFLRFS 297

Query: 301  WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMN 360
            WSKQTHVILADEMGLGKTIQSIAFLASLF E +SPHLVVAPLSTLRNWEREFATWAPQ+N
Sbjct: 298  WSKQTHVILADEMGLGKTIQSIAFLASLFEESLSPHLVVAPLSTLRNWEREFATWAPQLN 357

Query: 361  VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420
            VVMYVG++QAR +IREYEFY+PK+ KK+KKKKSGQVV ESKQDRIKFDVLLTSYEMINLD
Sbjct: 358  VVMYVGSAQARTVIREYEFYYPKSHKKIKKKKSGQVVGESKQDRIKFDVLLTSYEMINLD 417

Query: 421  SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF 480
            + SLKPIKW+CMIVDEGHRLKNKDSKLF SLKQYS+ HRVLLTGTPLQNNLDELFMLMHF
Sbjct: 418  TTSLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYSSNHRVLLTGTPLQNNLDELFMLMHF 477

Query: 481  LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540
            LDAGKF SLEEFQEEFKDINQEEQISRLH+MLAPHLLRRVKKDVM ELPPKKELILRVEL
Sbjct: 478  LDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMTELPPKKELILRVEL 537

Query: 541  SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF 600
            SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI+D+NESF
Sbjct: 538  SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDSNESF 597

Query: 601  KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660
            +QL+ESSGKLQLLDKMMV+LKEQGHRVLIYSQFQHMLDLLEDY T+KKWQYERIDGKVGG
Sbjct: 598  RQLVESSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGG 657

Query: 661  AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 720
            AERQ+RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
Sbjct: 658  AERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 717

Query: 721  LGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 780
            LGQTNKVMI+RLITRG+IEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE
Sbjct: 718  LGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 777

Query: 781  LFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEE 840
            LFADENDE GKSRQIHYDD AIDRLLDR+QVG+EEAS+DDE+EDGFLKAFKVANFEYI+E
Sbjct: 778  LFADENDEAGKSRQIHYDDTAIDRLLDREQVGEEEASVDDEEEDGFLKAFKVANFEYIDE 837

Query: 841  VEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 900
            V+AAAEE AQK AAE KS+++NSERS+YWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS
Sbjct: 838  VQAAAEEAAQKAAAEAKSTLNNSERSNYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 897

Query: 901  VEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE 960
            VEEDDLAGLEDVSS+GEDDNYEADLTD +T SSGTQ GRKP +KR+RVD+MEP PLMEGE
Sbjct: 898  VEEDDLAGLEDVSSDGEDDNYEADLTDSETASSGTQSGRKPYRKRARVDNMEPIPLMEGE 957

Query: 961  GRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITED 1020
            GRSFRVLGF+QNQRAAFVQILMRFGVG++DWKEF  R+KQKSYEEIR+YGILFL+HI E+
Sbjct: 958  GRSFRVLGFNQNQRAAFVQILMRFGVGEYDWKEFASRMKQKSYEEIRDYGILFLSHIVEE 1017

Query: 1021 ITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRG 1080
            ITDSP FSDGVPKEGLRIQDVLVRIAVLLLI +KVKF S+KPG PLFTDDI LRYPGL+ 
Sbjct: 1018 ITDSPNFSDGVPKEGLRIQDVLVRIAVLLLILEKVKFASEKPGIPLFTDDIVLRYPGLKS 1077

Query: 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASS-QA 1139
            GKFWKEEHD LLLRAVLKHGYGRWQAIVDDKDLK+QE+IC+ELNLPFINL + G SS QA
Sbjct: 1078 GKFWKEEHDLLLLRAVLKHGYGRWQAIVDDKDLKIQEIICKELNLPFINLLITGQSSTQA 1137

Query: 1140 PNGANSAN--PEALQMQGNSTGNDSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQV 1197
             NG N+AN  P + Q+QGN TGND AA   QGT+D  NQ Q+YQDS++LYHFRDMQRRQV
Sbjct: 1138 QNGVNAANTEPPSTQVQGNGTGNDLAADVAQGTSDIGNQPQLYQDSNILYHFRDMQRRQV 1197

Query: 1198 EFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKTTERPSPTSMEIDSQMVD 1257
            EFIKKRVLLLEKGLNAEYQKEYF DD KSNEI +EEPE + K  +  +  S E D+QM+D
Sbjct: 1198 EFIKKRVLLLEKGLNAEYQKEYF-DDSKSNEIATEEPEGDIKAADGFNLGSTETDAQMID 1256

Query: 1258 QLPKLEAI--KEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLR 1315
            QLP+ E I  +EI  AA D D DRL L Q YN+MC +LE+NV E V+TS+T+QPAS +LR
Sbjct: 1257 QLPQTELITTEEILTAAYDDDPDRLELPQLYNKMCNILEQNVQESVQTSITNQPASLKLR 1316

Query: 1316 TNLQLLETLCEDVNQILSTQTSPPLEQPMPNED----KELQPEIQSTSAEPSLPQTERGV 1371
              L  LET+ + +NQILS    P  + P+P ++     E Q E      +  LP  ++  
Sbjct: 1317 EGLLPLETISQQINQILS---HPQQKSPVPEQNALDSNEAQAESHGCLTQSHLPSIQQNN 1373

Query: 1372 NKLDAVVETEVKGT-PESEPTVEGSKASSKNPAVADVDSSPADPTSLLGKT-----GTGM 1425
            +    + + E K    ES+   EG++     P  AD   SP +P  +  +      G+ M
Sbjct: 1374 DNSSVLEDAERKDIMTESKLQKEGNEI----PPSADTCRSPKEPGMIKDEVQNVADGSSM 1429

Query: 1426 E------MAEAKNDADIKTDDKPTGKENSQRDKTGVIVLDD 1460
            E      + E KND D KTD      + +++  TGVIVLDD
Sbjct: 1430 ETENDVGVEEKKNDTDTKTDAILDENKTAEKSNTGVIVLDD 1470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475843\|ref\|XP_002282918.2\| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296082077\|emb\|CBI21082.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356507366\|ref\|XP_003522438.1\| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max]	Back alignment and taxonomy information

>gi\|356515042\|ref\|XP_003526210.1\| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max]	Back alignment and taxonomy information

>gi\|449485189\|ref\|XP_004157094.1\| PREDICTED: LOW QUALITY PROTEIN: CHD3-type chromatin-remodeling factor PICKLE-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449455537\|ref\|XP_004145509.1\| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224092566\|ref\|XP_002309665.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222855641\|gb\|EEE93188.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224143281\|ref\|XP_002324903.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222866337\|gb\|EEF03468.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357466053\|ref\|XP_003603311.1\| Chromatin remodeling complex subunit [Medicago truncatula] gi\|355492359\|gb\|AES73562.1\| Chromatin remodeling complex subunit [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S775	PKL_ARATH	3, ., 6, ., 4, ., -	0.7022	0.9191	0.9696	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CHR911	chromatin remodeling complex subunit (1340 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1460
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-155
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-104
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	3e-97
pfam06461		158	pfam06461, DUF1086, Domain of Unknown Function (DU	5e-47
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	9e-28
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-25
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	4e-21
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	5e-21
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	8e-21
pfam06465		66	pfam06465, DUF1087, Domain of Unknown Function (DU	7e-19
smart00249		47	smart00249, PHD, PHD zinc finger	4e-12
pfam00628		51	pfam00628, PHD, PHD-finger	1e-11
smart00298		55	smart00298, CHROMO, Chromatin organization modifie	1e-09
pfam00385		52	pfam00385, Chromo, Chromo (CHRromatin Organisation	2e-09
pfam11496		279	pfam11496, HDA2-3, Class II histone deacetylase co	3e-09
cd00024		55	cd00024, CHROMO, Chromatin organization modifier (	4e-08
cd00024		55	cd00024, CHROMO, Chromatin organization modifier (	2e-07
pfam00385		52	pfam00385, Chromo, Chromo (CHRromatin Organisation	3e-07
smart00298		55	smart00298, CHROMO, Chromatin organization modifie	5e-07
cd11726		127	cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha	4e-04
PRK04914		956	PRK04914, PRK04914, ATP-dependent helicase HepA; V	0.004

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

 Score =  498 bits (1283), Expect = e-155
 Identities = 302/870 (34%), Positives = 448/870 (51%), Gaps = 137/870 (15%)

Query: 284  GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAP 341
            G +  YQL GLN+L   +    + ILADEMGLGKT+Q+I+ L  L   R    PH+VVAP
Sbjct: 168  GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAP 227

Query: 342  LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESK 401
             STL NW  E   + P +  V + G  + R   RE E                       
Sbjct: 228  KSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQRE-ELLVAG------------------ 268

Query: 402  QDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVL 461
                KFDV +TS+EM   +  +LK   W+ +I+DE HR+KN++S L  +++ +ST +R+L
Sbjct: 269  ----KFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLL 324

Query: 462  LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK---DINQEEQISRLHRMLAPHLLR 518
            +TGTPLQNNL EL+ L++FL    F S E F E F+   + +Q+E + +LH++L P LLR
Sbjct: 325  ITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLR 384

Query: 519  RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578
            R+K DV K LPPKKE IL+V +S  QK+YYKA+L ++  ++   GG +  L+N+ M+LRK
Sbjct: 385  RLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA-GGERKRLLNIAMQLRK 443

Query: 579  LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD 638
             C HPY+ +G EP    T  + + L+E+SGK+ LLDK++ KLKE+  RVLI+SQ   +LD
Sbjct: 444  CCNHPYLFQGAEPGPPYT--TGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLD 501

Query: 639  LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 698
            +LEDYL ++ +QY RIDG  GG +R   ID FN   S +F FLLSTRAGGLGINLATAD 
Sbjct: 502  ILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADI 561

Query: 699  VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVV- 757
            VI+YDSDWNP  DLQA  RAHR+GQ  +V +FR  T  +IEE++++   KK+ L+ LV+ 
Sbjct: 562  VILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 621

Query: 758  -GRLKAQ-NINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEE 815
             GRL  Q  +N++EL  ++RYG++ +F        K   I   D  IDR++ +   G+E 
Sbjct: 622  QGRLAEQKTVNKDELLQMVRYGAEMVF------SSKDSTI--TDEDIDRIIAK---GEEA 670

Query: 816  ASLDDEDEDGFLK---AFKVANFEYIEEVEAAAEEEA-----QKLAAENKSSMSNSER-- 865
             +  D     F +    FK+ +   + + +   +++      +K+ ++N       ER  
Sbjct: 671  TAELDAKMKKFTEDAIKFKMDDTAELYDFDDEDDKDENKLDFKKIVSDNWIDPPKRERKR 730

Query: 866  ----SSYWEELLKDR---------------------YEVHKVEEFNALGKGKRSRKQMVS 900
                S Y+++ ++                       + V ++ E       K  R  M +
Sbjct: 731  NYSESEYFKQAMRQGAPAKPKEPRIPRMPQLHDFQFFNVQRLTELYE----KEVRYLMQA 786

Query: 901  VEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE 960
             ++     L+D     E +     LT  +                      E   L+E  
Sbjct: 787  HQKGQ---LKDTIDVAEPEEPGDPLTAEEQE--------------------EKEQLLEE- 822

Query: 961  GRSFRVLGFSQNQR---AAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHI 1017
                   GFS   R    AF++   ++G  D   K     ++ K+ EE+  Y  +F    
Sbjct: 823  -------GFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFWERY 873

Query: 1018 TEDITDSPTFSDGVPKEGLRIQ---DVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLR 1074
             E + D       + +   RI    +++  I   L   D+ K             ++ ++
Sbjct: 874  KE-LNDYDRIIKNIERGEARISRKDEIMKAIGKKL---DRYKNPWL---------ELKIQ 920

Query: 1075 YPGLRGGKFWKEEHDSLLLRAVLKHGYGRW 1104
            Y G   GK + EE D  +L  V K GYG W
Sbjct: 921  Y-GQNKGKLYNEECDRFMLCMVHKLGYGNW 949

Length = 1033

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|219039 pfam06461, DUF1086, Domain of Unknown Function (DUF1086)	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|148208 pfam06465, DUF1087, Domain of Unknown Function (DUF1087)	Back alignment and domain information

>gnl\|CDD\|214584 smart00249, PHD, PHD zinc finger	Back alignment and domain information

>gnl\|CDD\|201356 pfam00628, PHD, PHD-finger	Back alignment and domain information

>gnl\|CDD\|214605 smart00298, CHROMO, Chromatin organization modifier domain	Back alignment and domain information

>gnl\|CDD\|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain	Back alignment and domain information

>gnl\|CDD\|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3	Back alignment and domain information

>gnl\|CDD\|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>gnl\|CDD\|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>gnl\|CDD\|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain	Back alignment and domain information

>gnl\|CDD\|214605 smart00298, CHROMO, Chromatin organization modifier domain	Back alignment and domain information

>gnl\|CDD\|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked)	Back alignment and domain information

>gnl\|CDD\|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1460
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.97
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.96
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.96
PHA02558		501	uvsW UvsW helicase; Provisional	99.96
PF06461		145	DUF1086: Domain of Unknown Function (DUF1086); Int	99.96
PF08074		173	CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR01295	99.92
PTZ00110		545	helicase; Provisional	99.9
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.9
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.89
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.89
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.89
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.89
KOG0354		746	consensus DEAD-box like helicase [General function	99.89
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.89
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.89
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.88
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.88
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.87
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.87
KOG1123		776	consensus RNA polymerase II transcription initiati	99.87
PTZ00424		401	helicase 45; Provisional	99.87
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.85
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.85
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.84
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.84
PRK13767		876	ATP-dependent helicase; Provisional	99.84
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.84
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.83
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.83
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.83
PRK10689		1147	transcription-repair coupling factor; Provisional	99.81
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.8
PRK02362		737	ski2-like helicase; Provisional	99.77
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.76
PRK00254		720	ski2-like helicase; Provisional	99.75
PRK01172		674	ski2-like helicase; Provisional	99.75
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.73
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.72
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.72
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.72
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.7
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.69
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.69
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.68
PHA02653		675	RNA helicase NPH-II; Provisional	99.68
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.67
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.67
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.66
COG4096		875	HsdR Type I site-specific restriction-modification	99.66
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.66
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.63
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.63
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.63
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.63
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.62
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.62
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.61
COG4889		1518	Predicted helicase [General function prediction on	99.6
PRK09401		1176	reverse gyrase; Reviewed	99.6
PRK05580		679	primosome assembly protein PriA; Validated	99.6
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.59
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.59
COG1205		851	Distinct helicase family with a unique C-terminal	99.59
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.58
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.58
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.57
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.56
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.54
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.54
KOG4284		980	consensus DEAD box protein [Transcription]	99.52
PRK09694		878	helicase Cas3; Provisional	99.51
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.5
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.49
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.48
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.48
PRK14701		1638	reverse gyrase; Provisional	99.48
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.47
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.47
COG1204		766	Superfamily II helicase [General function predicti	99.46
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.45
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.45
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.45
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.44
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.44
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.43
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.41
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.38
COG1202		830	Superfamily II helicase, archaea-specific [General	99.38
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.38
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.37
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.36
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.34
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.33
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.33
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.33
PRK05298		652	excinuclease ABC subunit B; Provisional	99.32
PF09111		118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	99.31
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.3
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	99.28
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.24
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.23
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.22
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.21
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.21
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.18
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.12
KOG0327		397	consensus Translation initiation factor 4F, helica	99.11
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.1
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.1
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.09
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.07
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.03
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.03
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	99.02
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.01
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	98.93
KOG1244		336	consensus Predicted transcription factor Requiem/N	98.83
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.81
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.72
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.68
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	98.64
COG0610		962	Type I site-specific restriction-modification syst	98.63
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	98.62
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.62
PF06465		66	DUF1087: Domain of Unknown Function (DUF1087); Int	98.61
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.61
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.61
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.6
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.59
PF00385		55	Chromo: Chromo (CHRromatin Organisation MOdifier)	98.58
KOG4299		613	consensus PHD Zn-finger protein [General function	98.53
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.48
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.48
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.43
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	98.42
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.41
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	98.3
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.3
PRK15483		986	type III restriction-modification system StyLTI en	98.25
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	98.23
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.23
cd00024		55	CHROMO Chromatin organization modifier (chromo) do	98.14
KOG0825		1134	consensus PHD Zn-finger protein [General function	98.14
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.13
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	97.99
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.97
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	97.97
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.97
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.94
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.94
smart00298		55	CHROMO Chromatin organization modifier domain.	97.91
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	97.9
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.89
PF13871		278	Helicase_C_4: Helicase_C-like	97.82
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	97.81
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	97.8
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.8
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.76
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	97.67
PF00385		55	Chromo: Chromo (CHRromatin Organisation MOdifier)	97.66
KOG0957		707	consensus PHD finger protein [General function pre	97.62
KOG1512		381	consensus PHD Zn-finger protein [General function	97.59
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.55
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	97.55
cd00024		55	CHROMO Chromatin organization modifier (chromo) do	97.49
COG5034		271	TNG2 Chromatin remodeling protein, contains PhD zi	97.46
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	97.44
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.44
KOG1973		274	consensus Chromatin remodeling protein, contains P	97.32
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	97.13
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	97.12
COG5141		669	PHD zinc finger-containing protein [General functi	97.08
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	97.05
KOG0954		893	consensus PHD finger protein [General function pre	96.99
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	96.98
KOG2748		369	consensus Uncharacterized conserved protein, conta	96.9
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	96.75
KOG1245		1404	consensus Chromatin remodeling complex WSTF-ISWI,	96.74
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.72
KOG0956		900	consensus PHD finger protein AF10 [General functio	96.69
smart00298		55	CHROMO Chromatin organization modifier domain.	96.61
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	96.58
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	96.42
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.38
PRK10536		262	hypothetical protein; Provisional	96.35
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	96.13
KOG1911		270	consensus Heterochromatin-associated protein HP1 a	96.07
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	95.97
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.95
KOG1131		755	consensus RNA polymerase II transcription initiati	95.93
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.73
PRK14873		665	primosome assembly protein PriA; Provisional	95.67
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	95.6
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	95.38
KOG2748		369	consensus Uncharacterized conserved protein, conta	95.11
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.01
TIGR00376		637	DNA helicase, putative. The gene product may repre	94.44
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	93.77
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	93.64
PF13831		36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	93.55
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	93.44
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	93.43
KOG1803		649	consensus DNA helicase [Replication, recombination	93.37
KOG1805		1100	consensus DNA replication helicase [Replication, r	93.3
PLN03025		319	replication factor C subunit; Provisional	93.22
PRK04296		190	thymidine kinase; Provisional	92.72
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	92.5
PF00249		48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	92.32
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	92.14
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	91.98
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	91.87
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	91.65
PRK12402		337	replication factor C small subunit 2; Reviewed	91.44
PRK06526		254	transposase; Provisional	91.44
KOG0383		696	consensus Predicted helicase [General function pre	91.25
PRK09112		351	DNA polymerase III subunit delta'; Validated	90.93
KOG1133		821	consensus Helicase of the DEAD superfamily [Replic	90.84
PRK10875		615	recD exonuclease V subunit alpha; Provisional	90.75
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	90.71
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	90.55
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	90.55
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	90.46
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	90.42
smart00382		148	AAA ATPases associated with a variety of cellular	89.93
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	89.85
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	89.79
KOG4299		613	consensus PHD Zn-finger protein [General function	89.73
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	88.99
PRK08181		269	transposase; Validated	88.85
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	88.47
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	88.43
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	88.1
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	87.8
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	87.73
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	87.49
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	87.24
PRK00440		319	rfc replication factor C small subunit; Reviewed	87.12
PHA02533		534	17 large terminase protein; Provisional	87.02
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	86.97
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	86.85
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	86.83
PF15446		175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	86.52
CHL00181		287	cbbX CbbX; Provisional	86.29
PF00249		48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	86.18
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	85.98
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	85.84
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	85.59
KOG0457		438	consensus Histone acetyltransferase complex SAGA/A	85.31
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	84.69
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	84.68
PRK07940		394	DNA polymerase III subunit delta'; Validated	84.51
PRK14974		336	cell division protein FtsY; Provisional	84.27
PRK08084		235	DNA replication initiation factor; Provisional	84.23
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	83.79
PRK08116		268	hypothetical protein; Validated	83.68
PHA02544		316	44 clamp loader, small subunit; Provisional	83.67
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	83.65
PRK08727		233	hypothetical protein; Validated	82.94
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	82.76
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	82.6
PF15446		175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	82.51
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	82.29
PRK05707		328	DNA polymerase III subunit delta'; Validated	82.08
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	81.88
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	81.39
PF13173		128	AAA_14: AAA domain	81.34
KOG0957		707	consensus PHD finger protein [General function pre	81.25
PRK07471		365	DNA polymerase III subunit delta'; Validated	80.99
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	80.48
PRK08769		319	DNA polymerase III subunit delta'; Validated	80.47
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	80.44
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	80.23
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	80.13

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

Probab=100.00  E-value=5.9e-171  Score=1567.37  Aligned_cols=926  Identities=42%  Similarity=0.721  Sum_probs=757.6

Q ss_pred             ccccccccccccCccCCC----Ccccc--------cchhhhHHHhhhhccCCCcccccccchhhHHHhhhcChhHHHHHH
Q 000500          101 DIDKILDCEMRPTVAGDS----DVSKL--------GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN  168 (1460)
Q Consensus       101 diekiL~~R~~p~~~~~~----~~~~~--------~~k~~~~~EYlVKWkg~Sy~HctWvpe~~L~~~~~~~~~~k~kl~  168 (1460)
                      .|+.+++||.++...+..    .....        ..+.....||||||+|+||+||||+++++|...   ..++-+|++
T Consensus       184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~  260 (1373)
T KOG0384|consen  184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD  260 (1373)
T ss_pred             hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence            688888888654433210    00000        011134579999999999999999999998643   234447999


Q ss_pred             hHhhhhccCCC--chhhhccCCCCccchhhhhhhccCCCCceEEEEEeccccccccccccccccc-chHHHHHHHHhhhc
Q 000500          169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR  245 (1460)
Q Consensus       169 ~f~kk~~~~~~--~~ed~~~i~pe~~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~-~~~~i~~f~~~~~~  245 (1460)
                      ||.++......  ..++...++++|.+|||||++....+ .+|||||++|||++||||...+|.. .+.+++.|..+...
T Consensus       261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s  339 (1373)
T KOG0384|consen  261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS  339 (1373)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence            99988543321  12334568899999999999987655 8999999999999999999998864 67788888865432


Q ss_pred             ccccccCcCCCCCccccccCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHH
Q 000500          246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL  325 (1460)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l  325 (1460)
                      ..         .+...+...+.++.|.++..||.|+.|++||+||++|||||.++|+++.+||||||||||||||+|+||
T Consensus       340 k~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl  410 (1373)
T KOG0384|consen  340 KT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL  410 (1373)
T ss_pred             cc---------CCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence            21         112223334567889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCC--CCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 000500          326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD  403 (1460)
Q Consensus       326 ~~L~~~~--~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  403 (1460)
                      .+|+...  .||||||||+|++.+|++||..|+ ++++++|+|+..+|++|++|+|++....                 .
T Consensus       411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~  472 (1373)
T KOG0384|consen  411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K  472 (1373)
T ss_pred             HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence            9998864  579999999999999999999999 9999999999999999999999876541                 2


Q ss_pred             cccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcC
Q 000500          404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA  483 (1460)
Q Consensus       404 ~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p  483 (1460)
                      ..+|+++||||+++.+|...|..++|.+++|||||||||..|+++..|..+..+||||+||||+|||+.|||+|||||+|
T Consensus       473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P  552 (1373)
T KOG0384|consen  473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP  552 (1373)
T ss_pred             ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC
Q 000500          484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG  563 (1460)
Q Consensus       484 ~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~  563 (1460)
                      +.|.++++|...| +..+++.+..||.+|+||||||+|+||++.||++.|+|++|+||.+|+++|++||++|+.+|.++.
T Consensus       553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~  631 (1373)
T KOG0384|consen  553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA  631 (1373)
T ss_pred             CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence            9999999999999 778889999999999999999999999999999999999999999999999999999999999764


Q ss_pred             -CchhhHHHHHHHHHHHhCCcccccCCCCCcccc------hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh
Q 000500          564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM  636 (1460)
Q Consensus       564 -~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~------~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~  636 (1460)
                       ++..+|+|++|+||||||||||+.+++......      ++.+..+|.+||||.+|++||.+|++.||||||||||++|
T Consensus       632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm  711 (1373)
T KOG0384|consen  632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM  711 (1373)
T ss_pred             CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence             344799999999999999999999987654332      3678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHH
Q 000500          637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA  716 (1460)
Q Consensus       637 LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAig  716 (1460)
                      ||||++||..+||+|.||||++.++.|+++||+||+++|+.|||||||||||+||||++||||||||||||||+|+||++
T Consensus       712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA  791 (1373)
T KOG0384|consen  712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA  791 (1373)
T ss_pred             HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-------ccCCCHHHHHHHHHhchhhhhcccCcCC
Q 000500          717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-------AQNINQEELDDIIRYGSKELFADENDEG  789 (1460)
Q Consensus       717 RahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~~-------~~~~~~~el~~ll~~ga~~lf~~~~~e~  789 (1460)
                      |||||||++.|.||||||++||||.|+++|++||.|+++||+.|.       .+.++++||.+||+|||++||.++++++
T Consensus       792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~  871 (1373)
T KOG0384|consen  792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE  871 (1373)
T ss_pred             HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence            999999999999999999999999999999999999999998874       3568999999999999999999987665


Q ss_pred             CCcccccCCHHHHHHHhccCCCCCcccCCCCcchhhHHhHhhhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhH
Q 000500          790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW  869 (1460)
Q Consensus       790 ~~~~~i~~~d~~id~il~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  869 (1460)
                      .     .+.++|||+||.|.+...++.++ -..++.+|++|+||+|...|+..-+               ..   +.-.|
T Consensus       872 s-----~~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~~---~didw  927 (1373)
T KOG0384|consen  872 S-----KFCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------AE---RDIDW  927 (1373)
T ss_pred             c-----cccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------hh---ccCCh
Confidence            4     35679999999999987665442 2457889999999999986652211               00   11469


Q ss_pred             HHHHHHHHH-----HHHHHHhhhcCCCCCCcc--cccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc
Q 000500          870 EELLKDRYE-----VHKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN  942 (1460)
Q Consensus       870 ~~~~~~~~~-----~~~~~~~~~~~~~~r~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1460)
                      +.++++...     ++...+.+.+...+|.|.  +......+.  + .  .++    .++.     ..       .+ ..
T Consensus       928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~--~~~----~~e~-----~~-------~~-~~  985 (1373)
T KOG0384|consen  928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-A--ESR----SVEK-----SL-------GK-KG  985 (1373)
T ss_pred             hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-c--ccc----cccc-----cc-------cc-cc
Confidence            999987543     233344555665555554  322211110  0 0  000    0000     00       00 01


Q ss_pred             cccccCCCCCCCCCccccccchhhcCCChHHHHHHHHHHHhcCCCCcchhhhc--hhhcCCCHHHHHHHHHHHHHhhhhc
Q 000500          943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1020 (1460)
Q Consensus       943 ~~~~~~~~~~~~~L~~~e~~~l~v~GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia--~el~~Ks~eEvk~Ya~lF~~~~~E~ 1020 (1460)
                      ++|.+.+.      +    ..-.+.||+..+.|+|++++++||.+.+..+.|+  +++..++++++++.+.+.+..|.+.
T Consensus       986 ~~r~r~~~------~----~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen  986 KGRWREIL------K----RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred             cccccccc------c----cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence            22222111      1    1235679999999999999999999987766776  5788999999999999999999876


Q ss_pred             cCCC----CCcc---C----CCCc-------Cc--chhhHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc---C
Q 000500         1021 ITDS----PTFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1077 (1460)
Q Consensus      1021 i~d~----e~~~---d----~i~k-------~~--~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~---~ 1077 (1460)
                      +.+.    .++.   .    +.++       ++  +....|+.|+..+..|.+.|-.....+.  .    ..+.|.   .
T Consensus      1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~--~----~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPN--Q----FIIDYLPKSV 1129 (1373)
T ss_pred             cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCccccc--c----cccCCCCccc
Confidence            5442    1111   0    0010       01  3345677777777777777655421221  1    111121   1


Q ss_pred             CCCCCccChHHHHHHHHHHHHhccchhHHhhhCcccchHHHHH
Q 000500         1078 LRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVIC 1120 (1460)
Q Consensus      1078 ~~~~~~w~~eeD~~LL~gi~k~GyG~We~Ik~D~~l~l~~~i~ 1120 (1460)
                      ..+++.|+.++|..||+|||+||||+|++|++||+|+|.+||.
T Consensus      1130 ~~~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~ 1172 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIF 1172 (1373)
T ss_pred             cCcccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhc
Confidence            2378999999999999999999999999999999999999994

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins	Back alignment and domain information

>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases []	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00298 CHROMO Chromatin organization modifier domain	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>COG5141 PHD zinc finger-containing protein [General function prediction only]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]	Back alignment and domain information

>smart00298 CHROMO Chromatin organization modifier domain	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1460
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		1e-146
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		5e-60
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		2e-59
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		8e-57
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		1e-18
2yql_A		56	Solution Structure Of The Phd Domain In Phd Finger		2e-09
2puy_A		60	Crystal Structure Of The Bhc80 Phd Finger Length =		2e-09
1mm2_A		61	Solution Structure Of The 2nd Phd Domain From Mi2b		5e-09
2kft_A		56	Nmr Solution Structure Of The First Phd Finger Doma		5e-09
1xwh_A		66	Nmr Structure Of The First Phd Finger Of Autoimmune		1e-08
1mm3_A		61	Solution Structure Of The 2nd Phd Domain From Mi2b		3e-08
2kwj_A		114	Solution Structures Of The Double Phd Fingers Of Hu		4e-08
2e6r_A		92	Solution Structure Of The Phd Domain In Smcy Protei		1e-07
2l5u_A		61	Structure Of The First Phd Finger (Phd1) From Chd4		3e-07
2ysm_A		111	Solution Structure Of The First And Second Phd Doma		2e-06
1f62_A		51	Wstf-Phd Length = 51		4e-06
2e6s_A		77	Solution Structure Of The Phd Domain In Ring Finger		2e-05
3zvz_B		57	Phd Finger Of Human Uhrf1 Length = 57		3e-05
3t6r_A		72	Structure Of Uhrf1 In Complex With Unmodified H3 N-		3e-05
3sou_A		70	Structure Of Uhrf1 Phd Finger In Complex With Histo		4e-05
2lgg_A		69	Structure Of Phd Domain Of Uhrf1 In Complex With H3		4e-05
3shb_A		77	Crystal Structure Of Phd Domain Of Uhrf1 Length = 7		4e-05
3zvy_A		72	Phd Finger Of Human Uhrf1 In Complex With Unmodifie		4e-05
3ask_A		226	Structure Of Uhrf1 In Complex With Histone Tail Len		1e-04
2b2t_A		187	Tandem Chromodomains Of Human Chd1 Complexed With H		2e-04
3v43_A		112	Crystal Structure Of Moz Length = 112		4e-04
4gy5_A		241	Crystal Structure Of The Tandem Tudor Domain And Pl		4e-04
3u5m_A		207	Crystal Structure Of Trim33 Phd-Bromo In The Free S		4e-04
2ln0_A		110	Structure Of Moz Length = 110		5e-04
2b2u_A		187	Tandem Chromodomains Of Human Chd1 Complexed With H		6e-04

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800