Citrus Sinensis ID: 000503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1459 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKX0 | 1410 | ABC transporter C family | yes | no | 0.950 | 0.983 | 0.651 | 0.0 | |
| Q5T3U5 | 1492 | Multidrug resistance-asso | yes | no | 0.836 | 0.817 | 0.391 | 0.0 | |
| Q8R4P9 | 1501 | Multidrug resistance-asso | yes | no | 0.862 | 0.838 | 0.376 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | no | no | 0.778 | 0.737 | 0.362 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | no | no | 0.773 | 0.730 | 0.365 | 0.0 | |
| B2RX12 | 1523 | Canalicular multispecific | no | no | 0.790 | 0.757 | 0.352 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | no | no | 0.797 | 0.761 | 0.351 | 0.0 | |
| O15438 | 1527 | Canalicular multispecific | no | no | 0.790 | 0.755 | 0.353 | 0.0 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | no | no | 0.799 | 0.761 | 0.353 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.799 | 0.765 | 0.351 | 0.0 |
| >sp|Q9SKX0|AB13C_ARATH ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 941/1444 (65%), Positives = 1133/1444 (78%), Gaps = 57/1444 (3%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNT-DSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 256
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 257 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 316
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 317 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 676
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 677 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 854
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 855 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 914
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 915 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1034
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1154
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1155 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1214
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1335 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1453
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSF
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSF 1405
Query: 1454 VRAS 1457
VRAS
Sbjct: 1406 VRAS 1409
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q5T3U5|MRP7_HUMAN Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/1319 (39%), Positives = 742/1319 (56%), Gaps = 99/1319 (7%)
Query: 178 ASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDL 236
R +E LL D + E + + +S+ ++ + ++ RG +L +D+
Sbjct: 193 GGPREPWAQEPLLPEDQEPEV-----AEDGESWLSRFSYAWLAPLLARGACGELRQPQDI 247
Query: 237 LGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGF 296
LP + P+ + WQ L RA+ A+G Y+ LGLLK+V +GF
Sbjct: 248 CRLPHRLQPTYLARVFQAHWQ-------EGARLWRALYGAFGRCYLALGLLKLVGTMLGF 300
Query: 297 AGPLLLNKLIKFLQQGSGHLD-GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 355
+GPLLL+ L+ FL++G L G + A+ L ++L + QY + + K+ L+ R +++
Sbjct: 301 SGPLLLSLLVGFLEEGQEPLSHGLLYALGLAGGAVLGAVLQNQYGYEVYKVTLQARGAVL 360
Query: 356 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYT 415
I+Y K L + S GE + D++R +N A SFH+AW LP Q+ + LYLLY
Sbjct: 361 NILYCKALQL---GPSRPPTGEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQ 417
Query: 416 QVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGW 475
QV AFV GL + +LL+PVNK IA I + ++M++ KD R++ E+L+ IR +K GW
Sbjct: 418 QVGVAFVGGLILALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTELLSGIRVIKFCGW 477
Query: 476 EQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 535
EQ + + R+ E+ L KYLDA CV+ WA P + S+ F + LMGHQL A V
Sbjct: 478 EQALGARVEACRARELGRLRVIKYLDAACVYLWAALPVVISIVIFITYVLMGHQLTATKV 537
Query: 536 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 595
FT LAL LI PLN+FPWVINGL++A +S+ R+ FL + + + + P+ S
Sbjct: 538 FTALALVRMLILPLNNFPWVINGLLEAKVSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTV 597
Query: 596 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 655
L + A SW + + + L + KG LV ++G+VG GKSSLL
Sbjct: 598 LE----------LHGALFSWDPVGTSLETFISH---LEVKKGMLVGIVGKVGCGKSSLLA 644
Query: 656 SILGEMMLTHGSIHASG---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712
+I GE+ G + G Q PWI TIRDNILFGK +D Q Y E L+AC L
Sbjct: 645 AIAGELHRLRGHVAVRGLSKGFGLATQEPWIQFATIRDNILFGKTFDAQLYKEVLEACAL 704
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 772
+ D+S++ GD +GEKGV LSGGQRAR+ALARAVY ++Y+LDD L+AVDA VA +
Sbjct: 705 NDDLSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHL 764
Query: 773 LSNAIMGPHMLQ-KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFW 829
L I+G ML TR+LCTH + + AD V++M+ G++ G +++ V W
Sbjct: 765 LHRCILG--MLSYTTRLLCTHRTEYLERADAVLLMEAGRLIRAGPPSEILPLVQAVPKAW 822
Query: 830 STN--EFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELT 887
+ N E D++ Q K+ L +E+ + +++ E +KEG V L
Sbjct: 823 AENGQESDSATAQSVQN-----PEKTKEGLEEEQST------SGRLLQEESKKEGAVALH 871
Query: 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT----TGSSQTKYSTS---- 939
VY+ Y K G + L I S +LMQA+RN D WLS+W+ S + + STS
Sbjct: 872 VYQAYWKAVGQGLALAILFSLLLMQATRNAADWWLSHWISQLKAENSSQEAQPSTSPASM 931
Query: 940 ----------------------------------FYLVVLCIFCMFNSFLTLVRAFSFAF 965
FYL V NS TL+RA FA
Sbjct: 932 GLFSPQLLLFSPGNLYIPVFPLPKAAPNGSSDIRFYLTVYATIAGVNSLCTLLRAVLFAA 991
Query: 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV 1025
G+L+AA +H LL +++ APV FF+ TP GRILNRFSSD+ DDSLPFILNILLAN
Sbjct: 992 GTLQAAATLHRRLLHRVLMAPVTFFNATPTGRILNRFSSDVACADDSLPFILNILLANAA 1051
Query: 1026 GLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETL 1085
GLLG+ VL + LLLL P +Y +Q YR++SRELRRL S++ SP+Y+ +TL
Sbjct: 1052 GLLGLLAVLGSGLPWLLLLLPPLSIMYYHVQRHYRASSRELRRLGSLTLSPLYSHLADTL 1111
Query: 1086 NGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145
G S +RA + F + + L QR ++ WL +RLQL+ A ++S IA +A+
Sbjct: 1112 AGLSVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIAL 1171
Query: 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQ 1204
+ + L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+PQ
Sbjct: 1172 VQHQQGL----ANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERLEEYTCDLPQ 1227
Query: 1205 EELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1264
E L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GKS
Sbjct: 1228 EPQGQPLQLGTGWLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEKLGIVGRTGSGKS 1287
Query: 1265 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1324
S+L LFRL G++L+DG++ + LR + A++PQ PFLF G++R+NLDP ++
Sbjct: 1288 SLLLVLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLH 1347
Query: 1325 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDE 1383
D +W L++CH+ E + ++G G S S+GQRQL+CLARALL +K+LC+DE
Sbjct: 1348 KDRALWQALKQCHLSEVITSMGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDE 1407
Query: 1384 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1442
TA+VD +T +LQ I TV+TIAHR++T+LN D +L+L G +VE +P TL
Sbjct: 1408 ATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPATL 1466
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Homo sapiens (taxid: 9606) |
| >sp|Q8R4P9|MRP7_MOUSE Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/1364 (37%), Positives = 762/1364 (55%), Gaps = 106/1364 (7%)
Query: 141 QLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDC 200
Q TF + L +CL++L + ++ + + + LS + E
Sbjct: 156 QRGTFLPPLLPGPLGRVCLLILQLAAVLAYGLGWAAPGGPQEPWTHDPFLSSESQETEVA 215
Query: 201 NTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLD-FEDLLGLPTDMDPSTCHSKLLSCWQAQ 259
+ +S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 216 E----DGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWK-- 269
Query: 260 RSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG- 318
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L
Sbjct: 270 -----EGAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHG 324
Query: 319 --YVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
YVL +A G +++ + QY + + K+ L+ R ++++ +Y+K L + S G
Sbjct: 325 LLYVLGLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKALKL---GPSRPPTG 379
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
E+ + D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK
Sbjct: 380 EVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNK 439
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
IA I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L
Sbjct: 440 VIATRIMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRV 499
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
KYLDA CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVI
Sbjct: 500 IKYLDAACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVI 559
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGL+++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 560 NGLLESKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSWD 609
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS 673
++ + + L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 610 PIGASQKTFISH---LQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKG 666
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV
Sbjct: 667 FGLATQEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVT 726
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGGQRAR+ALARAVY +Y+LDD L+AVDA VA +L I+G + TR+LCTH
Sbjct: 727 LSGGQRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILG-VLSHTTRLLCTHR 785
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
+ + AD+V++M+ GQ+ G +++ V W+ +K+++ T+ S
Sbjct: 786 TEYLERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWA----------EKEQVATSGQS 835
Query: 852 AN--KQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAI 909
+ E+++ +++ E + EG V L VY+ Y + G + I +S +
Sbjct: 836 PSVCDLERTTEEELEVEQSTCGCLVQEESKSEGAVALHVYRAYWRAMGSGLAAAILVSLL 895
Query: 910 LMQASRNGNDLWLSYWVDT-----TGSSQTKYSTS------------------------- 939
LMQA+RNG D WL++W+ GS + S S
Sbjct: 896 LMQATRNGADWWLAHWLSQLKAGRNGSREDPASCSPGSTALFSPRLLLFSPGNLYTPLLS 955
Query: 940 ---------------FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984
FYL+V NS TL+RA FA G+L+AA +H+ LL +++
Sbjct: 956 TPLHKAASNGTADVHFYLIVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLM 1015
Query: 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044
APV F+D TP GR+LNRFSSD+ +DDSLPF+LNILLAN VGLLG+ VL + LLL
Sbjct: 1016 APVTFYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLL 1075
Query: 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104
L P F+Y +Q +YR++ RELRRL S++ SP+Y+ +TL G +RA + F +
Sbjct: 1076 LPPLSFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEEN 1135
Query: 1105 KEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGL 1164
+ + L QR ++ WL +RLQL+ A ++S IA +A++ + L + PGLVGL
Sbjct: 1136 QRLLELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGL 1191
Query: 1165 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQE----ELCGYQSLSPDWPF 1219
LSYA + LL +SSFT+TE MVS+ER+ EY DVPQE L W
Sbjct: 1192 VLSYALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDVPQEPHSQPLQSPHQQRISWLT 1251
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
QG +EFQ+V + Y+P LP AL + F +E G ++GIVGRTG+GKSS+ LFRL G
Sbjct: 1252 QGSVEFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAG 1311
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
++L+D ++ + +LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+
Sbjct: 1312 RVLLDNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLS 1371
Query: 1340 EEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
E A+ GL+ + E G + S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ
Sbjct: 1372 EVAVAMGGLDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQ 1431
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1442
I TV+TIAHR++T+LN D +L+L G +VE +P L
Sbjct: 1432 TICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPSAL 1475
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Mus musculus (taxid: 10090) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1232 (36%), Positives = 693/1232 (56%), Gaps = 96/1232 (7%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
+LK+++D + F P LL LI F++ + ++ GY+ AI + ++++SF Y H
Sbjct: 323 ILKLIHDLLVFLNPQLLKLLIGFVKSSNSYVWFGYICAILMFAVTLIQSFCLQSYFQHCF 382
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 404
L + +R+++M+ IY+K L + R +++ GE MSVD+ + ++ N WS
Sbjct: 383 VLGMCVRTTVMSSIYKKALTLSNLARKQYTIGETVNLMSVDSQKLMDATNYMQLVWSSVI 442
Query: 405 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 464
QI ++++ L+ ++ + ++G+ + +LLIPVN +A I N + MK KD+R++ EIL
Sbjct: 443 QITLSIFFLWRELGPSILAGVGVMVLLIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEIL 502
Query: 465 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
+ I+ LK + WE F + R E+K+L L + +F TP L S+ TF ++
Sbjct: 503 SGIKILKYFAWEPSFQEQVQGIRKKELKNLLRFGQLQSLLIFILQITPILVSVVTFSVYV 562
Query: 525 LM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
L+ + L+A FT + LFN L PL+ P V + ++ A +S+ RL R+LG + L
Sbjct: 563 LVDSANVLNAEKAFTSITLFNILRFPLSMLPMVTSSILQASVSVDRLERYLGGDD----L 618
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
+ +A +SNF D AV +A+ +W + + + V+L + G LVAV
Sbjct: 619 DTSA------IRRVSNF---DKAVKFSEASFTW----DPDLEATIQDVNLDIKPGQLVAV 665
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 702
+G VGSGKSSL++++LGEM HG I GS AYVPQ WI +GTI+DNILFG Y+ +
Sbjct: 666 VGTVGSGKSSLVSAMLGEMENVHGHITIQGSTAYVPQQSWIQNGTIKDNILFGSEYNEKK 725
Query: 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762
Y + LKAC L D+ ++ GGDMA IGEKG+NLSGGQ+ R++LARA Y +DIY+LDD LS
Sbjct: 726 YQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAAYQDADIYILDDPLS 785
Query: 763 AVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
AVDA V + I N ++GP+ L KTRI TH + + D +VV+ KG + GS DL
Sbjct: 786 AVDAHVGKHIF-NKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLGKGTILEKGSYRDL 844
Query: 821 --AVSLYSGFWST---------------------------------NEFDTSLHMQKQE- 844
+++ W T E SL M+++
Sbjct: 845 LDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIPEDAASLAMRRENS 904
Query: 845 ------------------MRTNASSANKQILLQ-EKDVVSVSDDAQEIIEVEQRKEGRVE 885
++ + N +L + EK+V + Q++I+ E + G+V+
Sbjct: 905 LRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEV-----EGQKLIKKEFVETGKVK 959
Query: 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTSFYLVV 944
++Y Y + GW+ L I L L + G++LWLS W D+ + T S+S +
Sbjct: 960 FSIYLKYLQAVGWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTNNSSSHRDMR 1019
Query: 945 LCIFC---MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
+ +F + L+ + A+ +H LLT I+ AP+ FFD TP GRI+NR
Sbjct: 1020 IGVFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFDTTPTGRIVNR 1079
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
FS D+ +DD LP L + F G+ G V++ F ++++P +Y +Q FY +
Sbjct: 1080 FSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISVQVFYVA 1139
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
TSR+LRRLDSV++SPIY+ F+ET+ G IRAF+ + F+A ++ + + Q+ +S +T+
Sbjct: 1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199
Query: 1122 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1181
+ WL++RL+L+ ++ F + + ++ R L T +VG LS A I L +
Sbjct: 1200 NRWLAIRLELVGNLVV-FCSALLLVIYRKTL-----TGDVVGFVLSNALNITQTLNWLVR 1253
Query: 1182 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAAL 1240
+E E +V++ER+ EY++V E P DWP G I+F N +RY+P L L
Sbjct: 1254 MTSEAETNIVAVERISEYINVENEAPWVTDKRPPADWPRHGEIQFNNYQVRYRPELDLVL 1313
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
I I+ G +VG+VGRTGAGKSS+ N LFR+ GGQI++DG+++ + + DLR R
Sbjct: 1314 KGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERL 1373
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISF 1358
++PQ P LF GSLR NLDPF+ D ++W LE H++ V +GL + V E G +
Sbjct: 1374 TIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNL 1433
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
S+GQRQL+CL RA+L+ SK+L LDE TA VD +T S++Q I E TVITIAHR+ T
Sbjct: 1434 SIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHT 1493
Query: 1419 VLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1450
+++ D+I++LD+G +VE G+P+ LL + S +
Sbjct: 1494 IMDSDKIMVLDNGKIVEYGSPEELLSNRGSFY 1525
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1227 (36%), Positives = 684/1227 (55%), Gaps = 98/1227 (7%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
LLK+VND F P LL LI F +L GY+ AI L ++++SF Y
Sbjct: 327 LLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFCLQCYFQLCF 386
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 404
KL +K+R++IM +Y+K L + R E++ GE MSVD + +++ N H WS
Sbjct: 387 KLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNFMHMLWSSVL 446
Query: 405 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 464
QI ++++ L+ ++ + ++G+ + +L+IP+N ++ K MK KD+R++ EIL
Sbjct: 447 QIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDKRLKIMNEIL 506
Query: 465 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
+ I+ LK + WE F + R E+K+L L +F + TP L S+ TF ++
Sbjct: 507 SGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYV 566
Query: 525 LMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLG-----CSE 577
L+ LDA FT + LFN L PL+ P +I+ ++ A +S RL ++LG S
Sbjct: 567 LVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYLGGDDLDTSA 626
Query: 578 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 637
+H+ NF D A+ +A+ +W E + + V+L + G
Sbjct: 627 IRHD---------------CNF---DKAMQFSEASFTW----EHDSEATVRDVNLDIMAG 664
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKN 697
LVAVIG VGSGKSSL++++LGEM HG I G+ AYVPQ WI +GTI+DNILFG
Sbjct: 665 QLVAVIGPVGSGKSSLISAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGTE 724
Query: 698 YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757
++ + Y + L+AC L D+ ++ GGD+A IGEKG+NLSGGQ+ R++LARA Y DIY+L
Sbjct: 725 FNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLL 784
Query: 758 DDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
DD LSAVDA V + I N ++GP+ L KTR+L TH++ + D +VV+ G + G
Sbjct: 785 DDPLSAVDAHVGKHIF-NKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKG 843
Query: 816 S-SADLA---------------------VSLYSGFWSTNEFDTSLHMQKQEMRTNASS-- 851
S SA LA +++ G ++ D L +E+ +A+S
Sbjct: 844 SYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDD-DYGLISSVEEIPEDAASIT 902
Query: 852 ----------------ANKQIL------LQEKDVVSVSDD-----AQEIIEVEQRKEGRV 884
+N + L L+ ++V S+ +D Q++I+ E + G+V
Sbjct: 903 MRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQKLIKKEFIETGKV 962
Query: 885 ELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTS---F 940
+ ++Y Y + G F I L+ ++ + G++LWLS W D+ + T Y S
Sbjct: 963 KFSIYLEYLQAIGLFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYPASQRDM 1022
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
+ V + + F AFG + A+ +H LL I+ AP+ FFD TP GRI+N
Sbjct: 1023 RVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVN 1082
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYR 1060
RF+ D+ +DD+LP L + F+G++ V++ F ++++P IY +Q FY
Sbjct: 1083 RFAGDISTVDDTLPQSLRSWITCFLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYV 1142
Query: 1061 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120
STSR+LRRLDSV+RSPIY+ F+ET++G IRAF+ + F+ + + Q+ +S +T
Sbjct: 1143 STSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWIT 1202
Query: 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1180
++ WL++RL+L+ + F A M VI R L VG LS A I L +
Sbjct: 1203 SNRWLAIRLELVGNLTVFFSALMMVI-YRDTLSG-----DTVGFVLSNALNITQTLNWLV 1256
Query: 1181 SSFTETEKEMVSLERVLEYMDVPQE-ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1239
+E E +V++ER+ EY V E + PDWP +G I+F N +RY+P L
Sbjct: 1257 RMTSEIETNIVAVERITEYTKVENEAPWVTDKRPPPDWPSKGKIQFNNYQVRYRPELDLV 1316
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L I I ++G+VGRTGAGKSS+ N LFR+ GGQI++DG++I + + DLR +
Sbjct: 1317 LRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREK 1376
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS 1357
++PQ P LF GSLR NLDPF+ D +IW LE H+K V + +GL V E+G +
Sbjct: 1377 LTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGN 1436
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S+GQRQL+CL RALL+ SK+L LDE TA VD +T +++Q I +E TVITIAHR+
Sbjct: 1437 LSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLH 1496
Query: 1418 TVLNMDEILILDHGHLVEQGNPQTLLQ 1444
T+++ D++++LD+G ++E G+P+ LLQ
Sbjct: 1497 TIMDSDKVMVLDNGKIIECGSPEELLQ 1523
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/1238 (35%), Positives = 701/1238 (56%), Gaps = 85/1238 (6%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIA 324
PS +RA+ + + ++ + +GF P LL+ LI+F+ + G++LA
Sbjct: 295 QPSFLRALVRTFTSSLLMSACFNLIQNLLGFVNPQLLSILIRFISDPTAPTWWGFLLAGL 354
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ L+S +++ QY + + L+LR++I+ +IY+K L + + + E + GE+ MSV
Sbjct: 355 MFLSSTMQTLILHQYYHCIFVMALRLRTAIIGVIYRKALVITNSVKRESTVGEMVNLMSV 414
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D R ++++ + WS P Q+ +A+Y L+ + + ++G+A+ +LLIP+N ++ +
Sbjct: 415 DAQRFMDVSPFINLLWSAPLQVILAIYFLWQILGPSALAGVAVIVLLIPLNGAVSMKMKT 474
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
K MK KD RI+ EIL I+ LK+Y WE F + R SE++ L YL A
Sbjct: 475 YQVKQMKFKDSRIKLMSEILNGIKVLKLYAWEPSFLEQVKGIRQSELQLLRKGAYLQAIS 534
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 562
F W TP L +L T G++ + LDA F L+LFN L PLN P +I+GL A
Sbjct: 535 TFIWICTPFLVTLITLGVYVYVDESNVLDAEKAFVSLSLFNILKIPLNMLPQLISGLTQA 594
Query: 563 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
+S++R+ FL +E + +E+ SP Y A+ + + T +W +
Sbjct: 595 SVSLKRIQDFLNQNELDPQCVERKTISPGY-------------AITIHNGTFTW----AQ 637
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ L+ +++ +PKG+LVAV+G VG GKSSL++++LGEM G + GS+AYVPQ
Sbjct: 638 DLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGVVSVKGSVAYVPQQA 697
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+++N+LFG+ +P+ Y + L+ C L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 698 WIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQR 757
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 799
++LARAVY ++I++LDD LSAVD+ VA+ I + ++GP + KTR+L TH + +
Sbjct: 758 VSLARAVYSDANIFLLDDPLSAVDSHVAKHIF-DQVIGPEGVLAGKTRVLVTHGISFLPQ 816
Query: 800 ADMVVVMDKGQVKWIG--------------------------------SSADLAVSLYSG 827
D ++V+ GQV +G +A+ V L
Sbjct: 817 TDFIIVLAGGQVSEMGHYSALLQHDGSFANFLRNYAPDEDQEDHEAALQNANEEVLLLED 876
Query: 828 FWSTNEFDTS-----LHMQKQEMRTNASSANKQIL------------LQEKDVVSVSDDA 870
ST+ T ++KQ MR +S +++ + L+++ +V+ + +
Sbjct: 877 TLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGEVQNRTMPKKHTNSLEKEALVTKTKET 936
Query: 871 QEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG 930
+I+ E + G V+L+VY +YAK G TL ICL A+ G ++WLS W +
Sbjct: 937 GALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICLLYGGQSAAAIGANVWLSAWSNDAE 996
Query: 931 SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFF 990
+ TS L V + L ++ AF+ G+++AA +H LL + +P FF
Sbjct: 997 EHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAIQAARLLHEALLHNKIRSPQSFF 1056
Query: 991 DQTPGGRILNRFSSDLYMIDDSL-PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049
D TP GRILNRFS D+Y+ID+ L P IL +L + F + I V+++ +F +++L P
Sbjct: 1057 DTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIMVIVASTPLFMVVVL-PLA 1115
Query: 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVV 1109
+Y +Q FY +TSR+L+RL+S+SRSPI++ F+ET+ G+S IRA+ F V
Sbjct: 1116 VLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVD 1175
Query: 1110 LYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1169
Q++SY + ++ WL + ++ + ++ F A AVIG R +L PGLVGL++SYA
Sbjct: 1176 NNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVIG-RNSL-----NPGLVGLSVSYA 1229
Query: 1170 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS-LSPD-WPFQGLIEFQN 1227
+ L + ++ E ++++ERV EY E +S +P+ WP +G++EF+N
Sbjct: 1230 LQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVESNRAPEGWPTRGMVEFRN 1289
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287
++RY+P L L ++ ++GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLN
Sbjct: 1290 YSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAEGEIVIDGLN 1349
Query: 1288 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAV 1345
+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1350 VAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHLNTFVSSQPA 1409
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
GL+ E G + SVGQRQL+CLARALL+ S+VL LDE TA +D +T ++Q I ++ +
Sbjct: 1410 GLDFQCAEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFE 1469
Query: 1406 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443
TV+TIAHR++T+++ + +L+LD G + E +P L+
Sbjct: 1470 DCTVLTIAHRLNTIMDYNRVLVLDKGVVAEFDSPVNLI 1507
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/1233 (35%), Positives = 686/1233 (55%), Gaps = 70/1233 (5%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 323
PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY
Sbjct: 311 EPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTA 369
Query: 324 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +++ L++ QY FH+ + ++++++++ +Y+K L + A R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLM 428
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P+N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKT 488
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAA 548
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 620
A +S++RL FL ELE + I +G N ++ +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERRSIKSGEGN------SITVKNATFTW----A 654
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 655 RGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 714
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740
WI + ++R+NILFG Y ++AC L D+ ++ GD IGEKGVNLSGGQ+
Sbjct: 715 AWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 774
Query: 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 798
R++LARAVY SDIY+ DD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 775 RVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 833
Query: 799 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD------------------ 835
D+++VM G++ +GS +L A + + ++ E D
Sbjct: 834 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSVSGSGKESKPV 893
Query: 836 ---------TSLHMQKQEMRTNASSAN---KQILLQEKDVVSVSDDAQEIIEVEQRKEGR 883
H+Q+ +++ S + + + E ++ +++E ++ + G+
Sbjct: 894 ENGMLVTDTVGKHLQRHLSNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQ 953
Query: 884 VELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYL 942
V+L+VY NY K G FIT + + S ++ WLS W D + T+ + +F L
Sbjct: 954 VQLSVYWNYMKAIGLFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRL 1013
Query: 943 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 1002
V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++NRF
Sbjct: 1014 SVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRF 1073
Query: 1003 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062
S +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY ++
Sbjct: 1074 SKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVAS 1133
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A+
Sbjct: 1134 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1193
Query: 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L +
Sbjct: 1194 RWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWLVRM 1247
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAAL 1240
+E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L L
Sbjct: 1248 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVL 1307
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR +
Sbjct: 1308 KHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKI 1367
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G +
Sbjct: 1368 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1427
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++T
Sbjct: 1428 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1487
Query: 1419 VLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1451
+++ +++LD G + E G P LLQ +S
Sbjct: 1488 IMDYTRVIVLDKGEVRECGAPSELLQQRGIFYS 1520
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1240 (35%), Positives = 684/1240 (55%), Gaps = 86/1240 (6%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIA 324
PS ++A+ +G ++ K++ D + F P LL+ LI+F+ + G+++A
Sbjct: 296 KPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGL 355
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ L S+++S Y ++ +K R+ IM +IY+K L + + + + GEI MSV
Sbjct: 356 MFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSV 415
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D R ++LA + WS P QI +A+Y L+ + + ++G+A +LLIP+N +A +
Sbjct: 416 DAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRA 475
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
K MK KD RI+ EIL I+ LK+Y WE F + R E++ L T YL
Sbjct: 476 FQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTT 535
Query: 505 VFFWATTPTLFSLFTFGLFALM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 562
F W +P L +L T ++ + + LDA F ++LFN L PLN P +I+ L A
Sbjct: 536 TFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQA 595
Query: 563 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
+S++R+ +FL E + +E+ SP Y A+ + T +W +
Sbjct: 596 SVSLKRIQQFLSQEELDPQSVERKTISPGY-------------AITIHSGTFTW----AQ 638
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ L+ + + +PKG+LVAV+G VG GKSSL++++LGEM G +H GS+AYVPQ
Sbjct: 639 DLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQA 698
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+++N+LFGK +P+ Y +TL+AC L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 699 WIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQR 758
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 799
++LARAVY +DI++LDD LSAVD+ VA+ I + I GP + KTR+L TH + +
Sbjct: 759 VSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVI-GPEGVLAGKTRVLVTHGISFLPQ 817
Query: 800 ADMVVVMDKGQVKWIGS------------------SADLAVSLYSGFWS----------- 830
D ++V+ GQV +G + D W+
Sbjct: 818 TDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEAL 877
Query: 831 ------------TNEFDTSLHMQKQEMRT-NASSAN----------KQILLQEKDVVSVS 867
T+ + +QKQ MR +A S++ + + EK V+ +
Sbjct: 878 LIEDTLSNHTDLTDNDPVTYVVQKQFMRQLSALSSDGEGQGRPVPRRHLGPSEKVQVTEA 937
Query: 868 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 927
+ + E+ G VEL+V+ +YAK G TL ICL + A+ G ++WLS W +
Sbjct: 938 KADGALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTN 997
Query: 928 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987
+ + +TS L V + FL ++ A + A G ++AA +H LL + +P
Sbjct: 998 DAMADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQ 1057
Query: 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
FFD TP GRILN FS D+Y++D+ L ++ +LL +F + VV+ F ++++P
Sbjct: 1058 SFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILP 1117
Query: 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
+Y+ +Q FY +TSR+L+RL+SVSRSPIY+ F+ET+ G+S IRA+ F
Sbjct: 1118 LAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTK 1177
Query: 1108 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1167
V QR+ Y + ++ WLS+ ++ + ++ F A AVIG R +L PGLVGL++S
Sbjct: 1178 VDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIG-RSSL-----NPGLVGLSVS 1231
Query: 1168 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEF 1225
Y+ + L + ++ E +V++ERV EY E + P WP +G +EF
Sbjct: 1232 YSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEF 1291
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+N ++RY+P L L D++ + GG +VGIVGRTGAGKSS+ LFR+ G+I +DG
Sbjct: 1292 RNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDG 1351
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--E 1343
LN+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1352 LNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQ 1411
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
GL+ E G + SVGQRQL+CLARALL+ S++L LDE TA +D +T +++Q I ++
Sbjct: 1412 PAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQ 1471
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443
TV+TIAHR++T+++ +L+LD G + E +P L+
Sbjct: 1472 FDTCTVLTIAHRLNTIMDYTRVLVLDKGVVAEFDSPANLI 1511
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Homo sapiens (taxid: 9606) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1240 (35%), Positives = 695/1240 (56%), Gaps = 73/1240 (5%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 323
+PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY+
Sbjct: 311 DPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPEILELIINFVNDREAPDWQGYLYTA 369
Query: 324 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +++ L++ QY FH+ + ++++++++ +Y+K L + + R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVTGMRIKTAVVGAVYRKALVITNSARKSSTVGEIVNLM 428
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVTLALYFLWLNLGPSVLAGVAVMILMVPFNAVMAMKT 488
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMNIRQEELKVLKKSAYLAA 548
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDEKNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 620
A +S++RL FL ELE + I +G NS + +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERWSIKDG-GGMNS----ITVKNATFTW----A 655
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
++ LN ++ +P G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 656 RDEPPTLNGITFAIPDGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 715
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740
WI + ++R+NILFG+ Y ++AC L D+ ++ GD+ IGEKGVNLSGGQ+
Sbjct: 716 AWIQNDSLRENILFGRPLQEHCYKAVMEACALLPDLEILPSGDLTEIGEKGVNLSGGQKQ 775
Query: 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 798
R++LARAVY SDIY+LDD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 776 RVSLARAVYCNSDIYLLDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 834
Query: 799 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD----------------TS 837
D+++VM G++ +GS +L A + + ++ E D S
Sbjct: 835 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFVRTYANTEQDLASEDDSKNGVSGLGKES 894
Query: 838 LHMQKQEMRTNA-----------SSANKQILLQEKDVVS------VSDDAQEIIEVEQRK 880
++ + T+A SS++ + Q+ + V ++ +++E ++ +
Sbjct: 895 KPVENGILVTDAVGKPLQRHLSNSSSHSVVTNQQHSSTAELQKSGVKEETWKLMEADKAQ 954
Query: 881 EGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTS 939
G+V+L+VY NY K G I+ + + S ++ WLS W D + + T+ + +
Sbjct: 955 TGQVKLSVYWNYMKAIGLCISFLSIFLFLCNHVSALASNYWLSLWTDDRPAVNGTQENRN 1014
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
F L V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++
Sbjct: 1015 FRLSVYGALGILQGVAVFGYSMAVSIGGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLV 1074
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059
NRFS +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY
Sbjct: 1075 NRFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFY 1134
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1119
++SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y +
Sbjct: 1135 VASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSI 1194
Query: 1120 TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
A+ WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L
Sbjct: 1195 VANRWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWL 1248
Query: 1180 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLP 1237
+ +E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L
Sbjct: 1249 VRMSSEMETNIVAVERLKEYSETEKEASWQIQETAPPSTWPHSGRVEFRDYCLRYREDLD 1308
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
L IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR
Sbjct: 1309 LVLKHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLR 1368
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1355
+ ++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G
Sbjct: 1369 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGG 1428
Query: 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1415
+ SVGQRQL+CLARALL+ +K+L LDE TA VD +T ++Q+ I ++ + TV+TIAHR
Sbjct: 1429 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTVLTIAHR 1488
Query: 1416 ISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
++T+++ +++LD G + E G P LLQ VF S +
Sbjct: 1489 LNTIMDYTRVIVLDKGEIRECGAPSELLQQR-GVFYSMAK 1527
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1256 (35%), Positives = 687/1256 (54%), Gaps = 89/1256 (7%)
Query: 258 AQRSCNCTNPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQQGSG-H 315
+QRS + SL + + +G PY + L K +D + F GP +L LI F+ S +
Sbjct: 304 SQRS---SEASLSKVLYKTFG-PYFLMSFLFKAAHDLLMFTGPEILKLLINFVNNKSAPN 359
Query: 316 LDGYVLAIALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFS 374
GY L + + L++ QY FH+ + ++L+++I+ +IY+K L + + R +
Sbjct: 360 WQGYFYTGLLFVCACLQTLILHQY-FHICFVTGMRLKTAIVGVIYRKALVITNSARKTST 418
Query: 375 DGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPV 434
GEI MSVD R ++LA + WS P Q+ +ALYLL+ + + ++G+A+ ILL+P+
Sbjct: 419 VGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLAGVAVMILLVPI 478
Query: 435 NKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHL 494
N +A MK KD RI+ EIL I+ LK+Y WE F +++ R E+K L
Sbjct: 479 NAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKELKVL 538
Query: 495 STRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSF 552
YL A F W P L +L TF ++ + LDA F LALFN L PLN
Sbjct: 539 KKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFPLNIL 598
Query: 553 PWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDAT 612
P VI+ +++A +S++RL FL E + S I ++N + ++++++AT
Sbjct: 599 PMVISSIVEASVSLKRLRVFLSHEELDPD--------SIIRGPITN---AEGSIVVKNAT 647
Query: 613 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
SW + LN ++ +P+GSL+AV+G+VG GKSSLL+++LGEM G + G
Sbjct: 648 FSWSKTDPPS----LNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDKKEGYVVVKG 703
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
SIAYVPQ WI + T+ DNI+FG+ + Y ++AC L D+ ++ GD IGEKGV
Sbjct: 704 SIAYVPQQAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGV 763
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILC 790
NLSGGQ+ R++LARAVY +D Y+ DD LSAVDA V + I I GP + KTR+L
Sbjct: 764 NLSGGQKQRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVI-GPKGILKNKTRVLV 822
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL------------------------------ 820
TH V + D ++VM G++ +GS +L
Sbjct: 823 THAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMESSDASSPS 882
Query: 821 ---AVSLYSGFWSTNEFDTSLHMQKQEMRT----------NASSANKQILLQEKDVVSVS 867
+ +G + +H Q T +S+A Q L EK+
Sbjct: 883 GKEGKPVENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKN----- 937
Query: 868 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 927
+ ++ E + K GRV+ TVY Y K G +I+ + + + ++ WLS W D
Sbjct: 938 --SWKLTEADTAKTGRVKATVYWEYMKAIGLYISFLSVFLFMCNHIASLASNYWLSLWTD 995
Query: 928 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987
+ T+ T+ L V + + + + G + A+ +H LL ++ +P+
Sbjct: 996 DPVVNGTQQYTNVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPM 1055
Query: 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
FF++TP G +++RFS ++ ID ++P I+ + + + ++G +++ +++ P
Sbjct: 1056 SFFERTPSGNLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPP 1115
Query: 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
+Y +Q FY +TSR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ + F+ +
Sbjct: 1116 LGLVYLLVQRFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMK 1175
Query: 1108 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1167
V Q+ Y + A+ WL++RL+ + I+ F A AVI +R L +PGL+GL++S
Sbjct: 1176 VDENQKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAVI-ARNKL-----SPGLIGLSVS 1229
Query: 1168 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEF 1225
Y+ I + L + ++ E +V++ERV EY ++ +E + +P WP +G +EF
Sbjct: 1230 YSLQITAYLNWLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEF 1289
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+ +RY+ L L +IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DG
Sbjct: 1290 RGFGLRYREDLDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDG 1349
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1345
+NI + DLR + ++PQ P LF GSLR NLDPF + D IW LE H+K V ++
Sbjct: 1350 INIAKIGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSL 1409
Query: 1346 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
L E G + SVGQRQL+CLARALL+ SK+L LDE TA VD +T +++Q+ I S+
Sbjct: 1410 PDKLNHECSEGGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQ 1469
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
+ TV+TIAHR++T+++ +L+LD G +VE +P LLQ + +F S + S +
Sbjct: 1470 FEECTVLTIAHRLNTIMDYTRVLVLDRGEVVECDSPDNLLQAK-GLFYSMAKDSGL 1524
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1459 | ||||||
| 358346459 | 1539 | ABC transporter C family member [Medicag | 0.995 | 0.944 | 0.667 | 0.0 | |
| 255543321 | 1395 | multidrug resistance-associated protein, | 0.895 | 0.936 | 0.762 | 0.0 | |
| 356547472 | 1384 | PREDICTED: ABC transporter C family memb | 0.944 | 0.995 | 0.704 | 0.0 | |
| 225443168 | 1305 | PREDICTED: ABC transporter C family memb | 0.872 | 0.975 | 0.771 | 0.0 | |
| 156556172 | 1457 | Multidrug Resistance associated Protein | 0.993 | 0.995 | 0.675 | 0.0 | |
| 334184186 | 1404 | multidrug resistance-associated protein | 0.947 | 0.984 | 0.652 | 0.0 | |
| 298286923 | 1410 | RecName: Full=ABC transporter C family m | 0.950 | 0.983 | 0.651 | 0.0 | |
| 297831764 | 1193 | ATMRP11 [Arabidopsis lyrata subsp. lyrat | 0.816 | 0.998 | 0.702 | 0.0 | |
| 298204674 | 1205 | unnamed protein product [Vitis vinifera] | 0.736 | 0.891 | 0.746 | 0.0 | |
| 5001458 | 1146 | putative ABC transporter [Arabidopsis th | 0.751 | 0.956 | 0.707 | 0.0 |
| >gi|358346459|ref|XP_003637285.1| ABC transporter C family member [Medicago truncatula] gi|355503220|gb|AES84423.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2050 bits (5311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1022/1530 (66%), Positives = 1210/1530 (79%), Gaps = 77/1530 (5%)
Query: 4 ICPNSPFVWDG--STFSKCFDDMIL----DFATNMVTIFIILIIGITQR-----SPRQNQ 52
ICPNSP V + ++L FA N+VTI +IL++GI Q+ + R +
Sbjct: 13 ICPNSPSVPFKIIKVLYEFHISLVLVYFTGFAVNVVTIAMILVLGIKQKISGRGTQRSDA 72
Query: 53 RINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLS 112
+++L+EK L+ +P +GAC S ++++ LLK++ G FV YH WL SCSE VW I+L +
Sbjct: 73 QMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIILFT 132
Query: 113 RCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINI 172
+CA HC+ +R+LCFWWI+ P++GI H + F S EV C+ E +VL+++ FG+ IN+
Sbjct: 133 KCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVINV 192
Query: 173 IRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLD 232
IR+KR SS+ S +E+ LLS GD+EE N D NN ++WD M FK I VMN+GV+KQLD
Sbjct: 193 IRLKRLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQLD 252
Query: 233 FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVND 292
+DLL L DM PS CH +L+ W+AQ S N NPSL A+C AYG+PY+CLGLLKV+ND
Sbjct: 253 SDDLLPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKVIND 312
Query: 293 SIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352
IGFAGPLLLNKLIKFLQQGS DGY+LA++LGLTSI+KSF DTQY+F LSKLKLKLRS
Sbjct: 313 GIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRS 372
Query: 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL 412
SIMT+IY+KCLYV LAERS+F++GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYL
Sbjct: 373 SIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYL 432
Query: 413 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKM 472
LYTQVKFAFVSGLAI ILLIPVNKWI+ LIA ATE+MMK+KDERIRRTGE+LT+IRTLKM
Sbjct: 433 LYTQVKFAFVSGLAIAILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKM 492
Query: 473 YGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDA 532
YGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP+LFSL TFGLFALMGHQLDA
Sbjct: 493 YGWELLFSSWLMATRSLEVKHLATRKYLDAWCVFFWATTPSLFSLSTFGLFALMGHQLDA 552
Query: 533 AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 592
A VFTC+ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL C E++ E+ + NS
Sbjct: 553 ATVFTCIALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRREVGE--NSSCSS 610
Query: 593 SNGLSNFNS-KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651
S +S +D+AV +QDA CSW +EE +N+VLN V+L L KGS VAVIGEVGSGKS
Sbjct: 611 SFLSKQPDSLQDLAVFIQDACCSWSSGDEEAKNLVLNHVTLSLSKGSFVAVIGEVGSGKS 670
Query: 652 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
SL+ SILGEM L HGSI++ GS+AYVPQVPW++SGT+RDNILFGK+Y+P+ Y++T+ AC
Sbjct: 671 SLIYSILGEMRLDHGSIYSHGSVAYVPQVPWVISGTVRDNILFGKSYNPERYADTINACA 730
Query: 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
LDVDIS MVGGDMAYIGEKGVNLSGGQRARLALAR +YH SD+ MLDD+LSAVD QVA+W
Sbjct: 731 LDVDISSMVGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDILSAVDVQVAQW 790
Query: 772 ILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
IL NAI+GP + KTR+LCTHN+QAIS+ADM +V+DKG VKW+G S+D SLY+ F
Sbjct: 791 ILHNAILGPLLKGKTRLLCTHNIQAISSADMTIVLDKGCVKWMGISSDFPTSLYTEFSPL 850
Query: 832 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 891
NE D++ H +Q N+S + +Q L ++ V+ + +++IEVE RKEG+VEL VYKN
Sbjct: 851 NEMDSTPHNHQQSCSINSSISEEQS-LPDRIVMDTLEGEEDVIEVELRKEGKVELGVYKN 909
Query: 892 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCM 950
YA F+GWFI ++ICLSA+LMQASRN NDLWLSYWVDTT QT YS SFYL +LC+FC+
Sbjct: 910 YAAFTGWFIAVIICLSALLMQASRNANDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCI 969
Query: 951 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN-------RFS 1003
NS TLVRAFSFAFG L+AA KVHN LL+K++NAPV FFDQTPGGRILN R S
Sbjct: 970 MNSIFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLEYDVFRLS 1029
Query: 1004 SDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ------------------VFFLLLL 1045
SDLY IDDSLPFILNILLANFVGLLGIA++LSYVQ VFFL+LL
Sbjct: 1030 SDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVFMIFLSFFFLCTAILKFVFFLVLL 1089
Query: 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105
+PFW+IYS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFKSED+F +KF
Sbjct: 1090 LPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFSKFT 1149
Query: 1106 EHVVLYQRTSYSELTASLWLSLRL-----------------------------------Q 1130
+H+ LYQ+TSY+E+ ASLWLSLRL Q
Sbjct: 1150 DHITLYQKTSYTEIVASLWLSLRLQVSLHFAKLVVRYYIRFELTKYGISTVLLLIMTFFQ 1209
Query: 1131 LLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEM 1190
LLAAFIISFIA MAV GS G+LP F TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEM
Sbjct: 1210 LLAAFIISFIALMAVAGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEM 1269
Query: 1191 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1250
VS+ER L+YMD+PQEE G Q L+PDWP QG+IEFQ+VT++Y PSLPAAL +I+F IEGG
Sbjct: 1270 VSIERALQYMDIPQEEQAGCQYLNPDWPNQGVIEFQHVTLKYMPSLPAALCNISFKIEGG 1329
Query: 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310
TQVGI+GRTGAGKSS+L ALFRLTPIC G I VDG++I N PVR+LR A+VPQSPFLF
Sbjct: 1330 TQVGIIGRTGAGKSSVLTALFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLF 1389
Query: 1311 EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLA 1369
EGSLRDNLDPF NDD KIW LEKCHVKEEVEA GL VKE G+SFSVGQRQL+CLA
Sbjct: 1390 EGSLRDNLDPFKTNDDSKIWDALEKCHVKEEVEAAGGLNVLVKEGGMSFSVGQRQLLCLA 1449
Query: 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1429
RALLKSSKVLCLDECTA+VD QTAS+LQ+ ISSECKGMTVITIAHRISTV+N+D ILILD
Sbjct: 1450 RALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVITIAHRISTVINLDNILILD 1509
Query: 1430 HGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
HG+L EQG+PQ LL+D S+FSSFV+AS+M
Sbjct: 1510 HGNLAEQGHPQILLKDGTSIFSSFVKASSM 1539
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543321|ref|XP_002512723.1| multidrug resistance-associated protein, putative [Ricinus communis] gi|223547734|gb|EEF49226.1| multidrug resistance-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2038 bits (5279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1312 (76%), Positives = 1140/1312 (86%), Gaps = 5/1312 (0%)
Query: 149 EVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQ 208
+VL+CLKE ++LLD++F ISINIIR++ AS + SSIE+ LLS D D+E+ DSGN Q
Sbjct: 88 QVLECLKESSVILLDVLFSISINIIRIRAASPKNSSIEDPLLSADIDIEQAYPVDSGNIQ 147
Query: 209 SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 268
S W+LM FKSI VM RG+IKQLDFEDLLGLP DM+P +CH +L CWQAQ++ +NP
Sbjct: 148 SCWNLMTFKSITPVMKRGIIKQLDFEDLLGLPDDMEPLSCHDRLSCCWQAQQTS--SNPL 205
Query: 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLT 328
L++AICCAYG+PY +GLLKV ND IGFAGPLLLNKLI+FLQ+GS H DGY+LA++LGLT
Sbjct: 206 LLKAICCAYGWPYFRIGLLKVFNDCIGFAGPLLLNKLIRFLQRGSAHWDGYLLALSLGLT 265
Query: 329 SILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDR 388
S+LKSF DTQYSFHL+KLKLKLR+SIMT+IYQKCL V LAERS+FS+GEIQTFMSVD DR
Sbjct: 266 SVLKSFLDTQYSFHLAKLKLKLRASIMTVIYQKCLCVTLAERSKFSEGEIQTFMSVDADR 325
Query: 389 TVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 448
TVNL NSFHD WSLP QIGVALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEK
Sbjct: 326 TVNLCNSFHDVWSLPLQIGVALYLLYTQVKFAFLSGLAITILLIPVNKWISELIASATEK 385
Query: 449 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508
MMKQKDERIR+TGEILT+IRTLKMYGWE +FSS LM+TRS+EVKHL+TRKYLDAWCVFFW
Sbjct: 386 MMKQKDERIRKTGEILTYIRTLKMYGWEHLFSSRLMETRSTEVKHLATRKYLDAWCVFFW 445
Query: 509 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 568
ATTPTLFSLFTFGLF LMGHQL+AA VFTCLALFN+LISPLNSFPWVINGLIDAFIS RR
Sbjct: 446 ATTPTLFSLFTFGLFTLMGHQLEAATVFTCLALFNNLISPLNSFPWVINGLIDAFISTRR 505
Query: 569 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628
L++FLGC E KH+LEQ S S N SNF S DMAV+M D C+W +E++QN+VLN
Sbjct: 506 LSKFLGCPENKHKLEQRTESLS--PNYQSNFVSDDMAVMMHDVCCAWSSGDEQQQNLVLN 563
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTI 688
V++ LPKGS +A++GEVGSGKSSLL +ILGEM GS+H+SGS AYVPQVPWILSGT+
Sbjct: 564 NVTVTLPKGSFIAIVGEVGSGKSSLLGAILGEMRFIRGSVHSSGSRAYVPQVPWILSGTV 623
Query: 689 RDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748
R+NILFGKNYD + Y +T+KAC LDVDIS+M GGDMAYIGEKGVNLSGGQRAR+ALARA+
Sbjct: 624 RENILFGKNYDSERYLDTIKACALDVDISMMAGGDMAYIGEKGVNLSGGQRARIALARAI 683
Query: 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808
Y GSD+YMLDDVLSAVDA+VAR IL NAI+GP + QKTR+LCTHNVQAIS+AD +VVM++
Sbjct: 684 YQGSDVYMLDDVLSAVDAEVARCILQNAILGPLLDQKTRVLCTHNVQAISSADRIVVMER 743
Query: 809 GQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD 868
G VKW+G+S DLAVS YS F NEFDT ++Q Q +R N S+ + + +K+ + VS+
Sbjct: 744 GHVKWVGNSTDLAVSSYSAFSLQNEFDTLSYVQGQGLRINTSTESIKSPSVDKESICVSE 803
Query: 869 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 928
+AQEI EVE RK GRVEL VYKNY FSG FI +VI LSAILMQASRNGNDLWLSYWVDT
Sbjct: 804 EAQEIFEVELRKAGRVELAVYKNYVAFSGCFIIVVIGLSAILMQASRNGNDLWLSYWVDT 863
Query: 929 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988
TGSS +STSFYL VLCIFC+ NS LTLVRAFSFAFG LRAA++VHNTLL K+++AP+
Sbjct: 864 TGSSHGGFSTSFYLAVLCIFCIVNSSLTLVRAFSFAFGGLRAAIQVHNTLLKKLIDAPIQ 923
Query: 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1048
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGIA++LSYVQV FLLLL+PF
Sbjct: 924 FFDQTPAGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVAFLLLLLPF 983
Query: 1049 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1108
WFIYSKLQFFYRSTSRELRRLDSVSRSPIYA+FTETL+G+STIRAFKSED F+AKF EHV
Sbjct: 984 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYATFTETLDGTSTIRAFKSEDCFLAKFTEHV 1043
Query: 1109 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1168
LYQRTSYSE ASLWLSLRLQL+AAFIISF+A MAV+GSRG LP + TPGLVGLALSY
Sbjct: 1044 GLYQRTSYSETIASLWLSLRLQLIAAFIISFVAVMAVVGSRGYLPISSGTPGLVGLALSY 1103
Query: 1169 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1228
AAPIVSLLG+FL+SFTETEKEMVS+ER L+YMD+ QEEL G QSL PDWPFQGLIEFQNV
Sbjct: 1104 AAPIVSLLGSFLTSFTETEKEMVSVERALQYMDISQEELEGSQSLGPDWPFQGLIEFQNV 1163
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
TMRYKPSLP AL + FT+ GGTQVGIVGRTGAGKSSILNALFRL+PI GG ILVDGLNI
Sbjct: 1164 TMRYKPSLPPALDGVTFTVAGGTQVGIVGRTGAGKSSILNALFRLSPISGGCILVDGLNI 1223
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGL 1347
I+ PVRDLR F+VVPQ+PFLFEGSLRDNLDP + DLKIWS LE+CH+KEEVE A GL
Sbjct: 1224 IDVPVRDLRAHFSVVPQTPFLFEGSLRDNLDPLQTSSDLKIWSTLEQCHIKEEVEMAGGL 1283
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
+ VK SG SFSVGQRQL+CLARALLKSS+VLCLDECTANVD QTASILQNAIS+EC+GM
Sbjct: 1284 DALVKGSGSSFSVGQRQLLCLARALLKSSRVLCLDECTANVDTQTASILQNAISTECEGM 1343
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
TVITIAHRISTV+NMD IL+LD G+++EQGNPQ LL+D + FSSF +ASTM
Sbjct: 1344 TVITIAHRISTVMNMDHILVLDRGNVIEQGNPQALLRDGFTRFSSFAKASTM 1395
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547472|ref|XP_003542136.1| PREDICTED: ABC transporter C family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2021 bits (5236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1429 (70%), Positives = 1175/1429 (82%), Gaps = 51/1429 (3%)
Query: 37 IILIIGITQRSPR----QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSY 92
+I+++G Q+ R + ++ L EK L+++P VGACLS VD+I L K+ + FV Y
Sbjct: 1 MIVVLGFNQKIGRGFRLSDSQMTLPEKFVLNLIPAVGACLSIVDLIFLWKKDHNSHFVGY 60
Query: 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLK 152
H+W +SCSE +W +
Sbjct: 61 HKWFNSCSELILWVSV-------------------------------------------- 76
Query: 153 CLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWD 212
C+ E +VLL+I F I+IN+IR+K S + S +E+ LLS D+EE D GNN ++WD
Sbjct: 77 CIMESLVVLLNISFSIAINVIRIKIPSFKSSLLEDPLLSNGVDLEEGGYNDLGNNGNFWD 136
Query: 213 LMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRA 272
LM FK I VMN GVIKQLD EDLL LPTD+ PS+CH +LSCWQAQ S N +NPSL RA
Sbjct: 137 LMTFKFITPVMNHGVIKQLDPEDLLPLPTDIGPSSCHDVILSCWQAQLSNNDSNPSLFRA 196
Query: 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILK 332
+C AYG+PY+CLGLLKV+ND IGFAGPLLLNKLI+FLQQGS +LDGY+LA++LGLTSI+K
Sbjct: 197 LCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIK 256
Query: 333 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNL 392
SF DTQY+FHLSKLKLKLRSSIMT+IY+KCL V LAERS+F++GEIQTFMSVD DRTVNL
Sbjct: 257 SFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNL 316
Query: 393 ANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 452
NSFHD WSLP QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI+ LIA ATE+MMK+
Sbjct: 317 CNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISQLIARATEQMMKE 376
Query: 453 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512
KDERIRRTGE+LT+IRTLKMYGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP
Sbjct: 377 KDERIRRTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTP 436
Query: 513 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRF 572
TLFSLFTFGLFALMGH+LDAAMVFTCLALFN+LISPLNSFPWVINGLIDA IS RRL+RF
Sbjct: 437 TLFSLFTFGLFALMGHELDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRF 496
Query: 573 LGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSL 632
L C E K ++ +SPS + + + + + V +QDA C+W + E+ N+VLN V+L
Sbjct: 497 LSCPERKFKVGDTNSSPSSFLSKQPD-SVQGLGVFIQDACCTWSSSEEQALNLVLNHVTL 555
Query: 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNI 692
+ +GS VAVIGEVGSGKSSLL SILGEM L GS++++ SIAYVPQVPWILSGT+RDNI
Sbjct: 556 SVSQGSFVAVIGEVGSGKSSLLYSILGEMQLARGSVYSNESIAYVPQVPWILSGTVRDNI 615
Query: 693 LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752
LFGK+YDP+ Y++TL+AC LDVD+S+MV GDMAYIGEKGVNLSGGQRARLALARA+YH S
Sbjct: 616 LFGKSYDPERYTDTLQACALDVDVSMMVRGDMAYIGEKGVNLSGGQRARLALARAMYHDS 675
Query: 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
D+ MLDDVLSAVD QVA+ IL NAI+GP M +KTR+LCTHN+QAIS+ADM+VVMDKG++K
Sbjct: 676 DVVMLDDVLSAVDVQVAQRILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGRIK 735
Query: 813 WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQE 872
W+G+SAD +S Y+ F NE D++LH +Q TN SS +K+ L D+V V + A+E
Sbjct: 736 WMGNSADFPISSYTEFSPLNEIDSALHNHRQSCSTNLSSKSKEQSLPNSDIVHVLEGAEE 795
Query: 873 IIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG-S 931
I+EVE RKEG+VEL VYK+YA F+GWF+T++ICLSAILMQASRNGNDLWLS+WVDTT S
Sbjct: 796 IVEVELRKEGKVELGVYKSYAVFTGWFMTVIICLSAILMQASRNGNDLWLSFWVDTTTES 855
Query: 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
SQT+YS SFYL +LC+FC+ NS TLVRAFSFAFG L+AA KVHN LL K+VNAPV FFD
Sbjct: 856 SQTRYSVSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNKLLNKLVNAPVQFFD 915
Query: 992 QTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1051
QTPGGRILNR SSDLY IDDSLPFI+NILLANFVGLLGI ++L YVQVFFLLLL+PFW+I
Sbjct: 916 QTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYI 975
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
YS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFK+ED+F AKF EH+ LY
Sbjct: 976 YSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKAEDFFFAKFIEHITLY 1035
Query: 1112 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAP 1171
Q+TSY+E+ ASLWLSLRLQLL AFI+SFIA MAV+GS G+LP F TPGLVGLALSYAAP
Sbjct: 1036 QKTSYTEIVASLWLSLRLQLLGAFIVSFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAP 1095
Query: 1172 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1231
IVSLLG+FLSSFTETEKEMVS+ER L+YMD+PQEE G LSPDWP QG+IEFQ+VT++
Sbjct: 1096 IVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQSVTLK 1155
Query: 1232 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1291
Y PSLPAAL +++F I GGTQVGI+GRTGAGKSS+LNALFRLTPIC G I +DG++I N
Sbjct: 1156 YMPSLPAALCNLSFRIVGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGVDIKNI 1215
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1350
PVR+LR A+VPQSPFLFEGSLRDNLDP MNDDLKIW+VLEKCHVKEEVEA GL+
Sbjct: 1216 PVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNVLEKCHVKEEVEAAGGLDVL 1275
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410
VKE+G+SFSVGQRQL+CLARALLKSSKVLCLDECTANVD QTAS+LQN ISSECKGMTVI
Sbjct: 1276 VKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECKGMTVI 1335
Query: 1411 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
TIAHRISTV+NMD ILILDHG L EQGNPQ LL+D S+FSSFVRAS M
Sbjct: 1336 TIAHRISTVINMDSILILDHGKLAEQGNPQILLKDGTSIFSSFVRASAM 1384
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443168|ref|XP_002264313.1| PREDICTED: ABC transporter C family member 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1986 bits (5145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1284 (77%), Positives = 1107/1284 (86%), Gaps = 11/1284 (0%)
Query: 186 EESLLSVDGDVEEDCNTDS------GNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 239
+E L S ++E + N D+ G QSYW L+ FK+I SVMN GV+KQLDFEDLL L
Sbjct: 23 KELLFSKTYNLEVEANMDTLTGQLKGKTQSYWHLLTFKAITSVMNHGVVKQLDFEDLLQL 82
Query: 240 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 299
P DMDPS+CH+ LLSCW AQ+ NC+NPSL RAICCAYG+PY LGLLKVVND IGF GP
Sbjct: 83 PIDMDPSSCHATLLSCWHAQQRHNCSNPSLFRAICCAYGWPYFRLGLLKVVNDCIGFVGP 142
Query: 300 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359
+LLN LI+FLQQGSG+LDGY+LA+A+GL I KSF DTQY+FHLSKLKLKLRSSIMT+IY
Sbjct: 143 VLLNNLIRFLQQGSGNLDGYILAVAMGLIPIFKSFLDTQYTFHLSKLKLKLRSSIMTVIY 202
Query: 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 419
KCL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKF
Sbjct: 203 HKCLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKF 262
Query: 420 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 479
AFVSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F
Sbjct: 263 AFVSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLF 322
Query: 480 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 539
SWLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCL
Sbjct: 323 MSWLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCL 382
Query: 540 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS- 597
ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S
Sbjct: 383 ALFNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQF 442
Query: 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
NF +DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSI
Sbjct: 443 NFKLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSI 502
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
L EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DIS
Sbjct: 503 LKEMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDIS 562
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
LMVGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI
Sbjct: 563 LMVGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAI 622
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837
+GP M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+GSS D +VS YS F S NEF S
Sbjct: 623 LGPLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVGSSTDFSVSSYSTFCSLNEFTVS 682
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SG
Sbjct: 683 -QVRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSG 741
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTT-GSSQTKYSTSFYLVVLCIFCMFNSFLT 956
WFIT+VICLSAILMQASRNGNDLWLSYWVDTT GSS T+YSTSFYLVVLCIFC+ NSFLT
Sbjct: 742 WFITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVVLCIFCVINSFLT 801
Query: 957 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016
LVRAFSFAFG LRAAV+VHNTLL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFI
Sbjct: 802 LVRAFSFAFGGLRAAVQVHNTLLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFI 861
Query: 1017 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSP 1076
LNILLAN VGLLGIA+VLSYVQV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSP
Sbjct: 862 LNILLANIVGLLGIAIVLSYVQVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSP 921
Query: 1077 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136
I+ASFTETL+GSSTIRAFK ED F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +
Sbjct: 922 IFASFTETLDGSSTIRAFKCEDLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALV 981
Query: 1137 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1196
ISF+A MAVIGSR +LP + TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERV
Sbjct: 982 ISFVAMMAVIGSRDSLPISLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERV 1041
Query: 1197 LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1256
L+YMD+PQEEL G QSLSP+WP +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+
Sbjct: 1042 LQYMDIPQEELNGCQSLSPNWPSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGII 1101
Query: 1257 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1316
GRTGAGKSSILNALFRLTPIC G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRD
Sbjct: 1102 GRTGAGKSSILNALFRLTPICKGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRD 1161
Query: 1317 NLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKS 1375
NLDPF ++DDLKIW LE+CHVKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKS
Sbjct: 1162 NLDPFRVSDDLKIWKTLERCHVKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKS 1221
Query: 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVE 1435
SKVLCLDECTAN+DAQT+S+LQNAI +EC+GMTVITIAHRISTVL+MD ILILD G LVE
Sbjct: 1222 SKVLCLDECTANIDAQTSSVLQNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVE 1281
Query: 1436 QGNPQTLLQDECSVFSSFVRASTM 1459
QGNPQ LLQD S FS F +ASTM
Sbjct: 1282 QGNPQVLLQDHSSRFSGFAKASTM 1305
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|156556172|emb|CAO94660.1| Multidrug Resistance associated Protein 1 [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 1964 bits (5087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1463 (67%), Positives = 1189/1463 (81%), Gaps = 13/1463 (0%)
Query: 1 MDFICPNSPFVWDGSTFSKCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKV 60
+ ICP+SP+VW+G+ S+CF +++L F NM T+ +I+++G+T+RS R+++RI+L K+
Sbjct: 4 LKHICPDSPYVWNGNGVSRCFSNIVLGFGANMATLIVIVLVGVTRRSGRRSRRIHLSAKI 63
Query: 61 FLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHCL 120
L +P +GA +S ++++LL++ + G ++ E+L S F VW ++L+S C + +
Sbjct: 64 LLFTVPALGAFVSFFEIVVLLRKIVGGYPFAFQEYLFPGSLFGVWVTVLLVSICDYWFVI 123
Query: 121 FCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASS 180
FC+R+LC WWIIKP + I H V F+S E+L CL E L LD FGI INII+ K AS
Sbjct: 124 FCNRLLCLWWIIKPFLWIPHLQVVFTSQELLPCLGESFLAFLDFTFGILINIIKSKWASH 183
Query: 181 RRS--SIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLG 238
R S SIEE LL D + C G + W ++ FKSIDSVM GV +QLDF DLL
Sbjct: 184 RSSCDSIEEPLLPCKVDAKGHCGI-LGLANNLWRIITFKSIDSVMENGVKRQLDFNDLLQ 242
Query: 239 LPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAG 298
LP DMD S C++ L CW+AQ+ N +NPSL++A+CCAYG+PY +GLLKV+ND + F G
Sbjct: 243 LPEDMDSSCCYNLLQHCWEAQQRNNNSNPSLLKAVCCAYGWPYFRIGLLKVINDCLSFVG 302
Query: 299 PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358
P+LLNKLIKFLQQGS H DGY+ AI+LGL+S+LKSF DTQYSFHL+++KLKLRSSIMTI+
Sbjct: 303 PVLLNKLIKFLQQGSNHYDGYIFAISLGLSSVLKSFLDTQYSFHLARIKLKLRSSIMTIV 362
Query: 359 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVK 418
Y KCL VRLAERS+FS+GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYLLY QVK
Sbjct: 363 YCKCLSVRLAERSKFSEGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYVQVK 422
Query: 419 FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQI 478
FAF+SG+AITILLIPVNKWIA LIA AT+ MM+QKDERIRRT E+LT+IRTLKMYGWE +
Sbjct: 423 FAFLSGIAITILLIPVNKWIAQLIAKATKSMMEQKDERIRRTAELLTYIRTLKMYGWELL 482
Query: 479 FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTC 538
F+SWLMKTRS EVKHLSTRKYLDAWCVFFWATTPTLFSL TFGL+ LMGHQLDAA VFTC
Sbjct: 483 FASWLMKTRSLEVKHLSTRKYLDAWCVFFWATTPTLFSLCTFGLYTLMGHQLDAATVFTC 542
Query: 539 LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLS 597
LALFN+LISPLNSFPWVINGLIDAFIS RL+ +L C E+K LE+ N P+ SN L
Sbjct: 543 LALFNNLISPLNSFPWVINGLIDAFISSGRLSNYLSCCEHKVALEKTGNYPTPSCSNNLE 602
Query: 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
N MAV + DA C+W ++++E +++L++++L +PKG LVAV+GEVGSGKS+LLN I
Sbjct: 603 N-----MAVTICDACCTWSSSDKKEFDLLLHKITLQVPKGCLVAVVGEVGSGKSALLNLI 657
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
L E+ L GS+ +GS+ YVPQVPWILSGTIRDNILFG ++P+ YS+ LKAC LD DIS
Sbjct: 658 LEEVRLVSGSLSLTGSVTYVPQVPWILSGTIRDNILFGTEFNPRRYSDVLKACALDFDIS 717
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
LM+GGDMA IGEKG+NLSGGQRARLALARA+Y GS+IYMLDDVLSAVDA VA IL+NAI
Sbjct: 718 LMMGGDMACIGEKGLNLSGGQRARLALARAIYCGSEIYMLDDVLSAVDAHVASSILNNAI 777
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837
+GP M Q+TRILCTHN+QAI AAD+VV MDKG+VKW+GS ++L VS Y S + + S
Sbjct: 778 LGPLMNQQTRILCTHNIQAIYAADVVVEMDKGRVKWVGSPSNLTVSSYLALPSIDNLNGS 837
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897
+ K+ +R+ +S + +QE+D +++ + QE IE E RKEG+VEL VYKNYA F+G
Sbjct: 838 SEVHKKVIRSAVASETIE-EVQEQDHLNLLEAVQETIEAETRKEGKVELIVYKNYAAFAG 896
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTL 957
WFIT+ C SAI MQASRNGNDLWLSYWVDTTGSSQ +ST+FYLV+LC+FC NS LTL
Sbjct: 897 WFITIATCFSAIFMQASRNGNDLWLSYWVDTTGSSQKNFSTTFYLVILCLFCFVNSSLTL 956
Query: 958 VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017
VRAFSFA+G LRAA VH+ +L +++NA V F+DQTP GRILNRFSSDLY IDDSLPFIL
Sbjct: 957 VRAFSFAYGGLRAAKVVHDQMLNRLINATVSFYDQTPTGRILNRFSSDLYTIDDSLPFIL 1016
Query: 1018 NILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPI 1077
NILLANFVGLLGIA+VLSYVQV FLLLL+PFW+IYSK+QF+YRSTSRELRRLDSVSRSPI
Sbjct: 1017 NILLANFVGLLGIAIVLSYVQVLFLLLLLPFWYIYSKIQFYYRSTSRELRRLDSVSRSPI 1076
Query: 1078 YASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137
YASFTETL+G+STIRAFKSED+F+ +F +H+ LYQRTSYSE+TASLWLSLRLQLLAAFI+
Sbjct: 1077 YASFTETLDGASTIRAFKSEDFFLFRFIQHITLYQRTSYSEVTASLWLSLRLQLLAAFIV 1136
Query: 1138 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVL 1197
SF+A MAVIG+ +LP TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL
Sbjct: 1137 SFVAVMAVIGAHKHLPINLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVL 1196
Query: 1198 EYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1257
+YMD+PQEE+ + +WP G I+FQNVT+RY PSLPAALHD++FTI GGTQVG++G
Sbjct: 1197 QYMDIPQEEVG--MLIEHNWPSHGEIQFQNVTLRYMPSLPAALHDVSFTISGGTQVGVIG 1254
Query: 1258 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN 1317
RTGAGKSSILNALFRL I GG+ILVD ++I +R LR + AVVPQSPFLF+ SLR N
Sbjct: 1255 RTGAGKSSILNALFRLNSITGGRILVDDVDISIVSLRHLRSQLAVVPQSPFLFKASLRAN 1314
Query: 1318 LDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSS 1376
LDPF DD IW+VL+KCHVKEEVEA+ GL+ VKESG SFSVGQRQL+CLARALLKSS
Sbjct: 1315 LDPFKEKDDADIWNVLKKCHVKEEVEALGGLDIEVKESGTSFSVGQRQLLCLARALLKSS 1374
Query: 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436
KVLCLDECTAN+D QTAS LQNAI++EC+G TVITIAHRISTVLNMD ILILD G LVEQ
Sbjct: 1375 KVLCLDECTANIDTQTASKLQNAIANECRGTTVITIAHRISTVLNMDNILILDQGILVEQ 1434
Query: 1437 GNPQTLLQDECSVFSSFVRASTM 1459
GNP LLQD+ S+FSSF RAS M
Sbjct: 1435 GNPNVLLQDDSSLFSSFFRASKM 1457
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184186|ref|NP_178811.7| multidrug resistance-associated protein 11 [Arabidopsis thaliana] gi|330251033|gb|AEC06127.1| multidrug resistance-associated protein 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1838 bits (4761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 941/1443 (65%), Positives = 1133/1443 (78%), Gaps = 61/1443 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQ 257
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CWQ
Sbjct: 191 R-----IEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCWQ 245
Query: 258 AQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD 317
Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 246 LQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK---------- 295
Query: 318 GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGE 377
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GE
Sbjct: 296 ---------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGE 340
Query: 378 IQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKW 437
IQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKW
Sbjct: 341 IQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKW 400
Query: 438 IANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTR 497
I+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TR
Sbjct: 401 ISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATR 460
Query: 498 KYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN 557
KYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVIN
Sbjct: 461 KYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVIN 520
Query: 558 GLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYC 617
GLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 521 GLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSS 569
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYV
Sbjct: 570 NVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYV 629
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGG
Sbjct: 630 PQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGG 689
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797
QRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QAI
Sbjct: 690 QRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAI 749
Query: 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQ 855
S ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 750 SCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ET 800
Query: 856 ILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASR 915
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SR
Sbjct: 801 LSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSR 860
Query: 916 NGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975
NGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH
Sbjct: 861 NGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHVH 920
Query: 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLS 1035
N L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLS
Sbjct: 921 NALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLS 980
Query: 1036 YVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFK 1095
YVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFK
Sbjct: 981 YVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFK 1040
Query: 1096 SEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPAT 1155
SE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +
Sbjct: 1041 SEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPIS 1100
Query: 1156 FSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1215
F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1101 FGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSD 1160
Query: 1216 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP
Sbjct: 1161 KWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTP 1220
Query: 1276 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+K
Sbjct: 1221 VCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDK 1280
Query: 1336 CHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
C VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS
Sbjct: 1281 CKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTAS 1340
Query: 1395 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454
+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSFV
Sbjct: 1341 LLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFV 1400
Query: 1455 RAS 1457
RAS
Sbjct: 1401 RAS 1403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298286923|sp|Q9SKX0.3|AB13C_ARATH RecName: Full=ABC transporter C family member 13; Short=ABC transporter ABCC.13; Short=AtABCC13; AltName: Full=ATP-energized glutathione S-conjugate pump 11; AltName: Full=Glutathione S-conjugate-transporting ATPase 11; AltName: Full=Multidrug resistance-associated protein 11 | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 941/1444 (65%), Positives = 1133/1444 (78%), Gaps = 57/1444 (3%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNT-DSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 256
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 257 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 316
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 317 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 676
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 677 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 854
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 855 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 914
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 915 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1034
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1154
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1155 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1214
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1335 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1453
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSF
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSF 1405
Query: 1454 VRAS 1457
VRAS
Sbjct: 1406 VRAS 1409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831764|ref|XP_002883764.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] gi|297329604|gb|EFH60023.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1733 bits (4488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1236 (70%), Positives = 1010/1236 (81%), Gaps = 45/1236 (3%)
Query: 223 MNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 282
M G +KQL+FE+LL LP DMDP TC LL CWQ Q N + PSL+ +I YG+PY
Sbjct: 1 MKHGSVKQLEFENLLPLPPDMDPFTCCENLLRCWQLQECNNYSTPSLIWSISGVYGWPYF 60
Query: 283 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFH 342
LGLLKV ND IGFAGPL LN+LIK SF DTQY+F
Sbjct: 61 RLGLLKVFNDCIGFAGPLFLNRLIK-------------------------SFLDTQYTFR 95
Query: 343 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
LSK KLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VNL NS HD WSL
Sbjct: 96 LSKFKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVNLCNSLHDMWSL 155
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGE 462
P QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK KDERIR+TGE
Sbjct: 156 PLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMKLKDERIRKTGE 215
Query: 463 ILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 522
+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATTPTLFSL TFGL
Sbjct: 216 LLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATTPTLFSLCTFGL 275
Query: 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
FALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++FL C E+ +
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSKFLCCLEHSRDF 335
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
I +GL+ S+D+AV ++DA+ +W N EE+ N+ + VSL +PKGS VAV
Sbjct: 336 S--------IDSGLT---SEDLAVFVEDASSTWSSNLEEDYNLTIKHVSLRVPKGSFVAV 384
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 702
IGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPWILSGTIR+NILFGK +D +S
Sbjct: 385 IGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWILSGTIRENILFGKPFDSKS 444
Query: 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762
Y ETL AC LDVDISLM GGDMA IG+KGVNLSGGQRARLALARAVYHGSD+Y+LDDVLS
Sbjct: 445 YFETLSACALDVDISLMAGGDMACIGDKGVNLSGGQRARLALARAVYHGSDMYLLDDVLS 504
Query: 763 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822
AVD+QV WIL A++GP + +KTR++CTHN+QAIS ADM+VVMDKG+VKW G+ D+
Sbjct: 505 AVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVKWSGTVTDMPK 564
Query: 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 882
S+ F +N+FD N + K+ L +KD + +A +I+++E+RKEG
Sbjct: 565 SISPTFSLSNDFDMP--------SPNHLTKRKEPLSIKKDDLDEISEAADIVKLEERKEG 616
Query: 883 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL 942
RVE+TVY+NYA FSGWFI +VI +SA+LMQASRNGNDLWLSYWVD TG + YSTSFYL
Sbjct: 617 RVEVTVYRNYAAFSGWFIAIVILVSAVLMQASRNGNDLWLSYWVDKTGRGVSHYSTSFYL 676
Query: 943 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 1002
+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH+ L++K++NAP FFDQTP GRILNRF
Sbjct: 677 MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHSALISKLINAPTQFFDQTPSGRILNRF 736
Query: 1003 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062
SSDLY IDDSLPFILNILLANFVGLLGI VLSYVQV FLLLL+PFW+IYSKLQFFYRST
Sbjct: 737 SSDLYTIDDSLPFILNILLANFVGLLGIIAVLSYVQVLFLLLLLPFWYIYSKLQFFYRST 796
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
SRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+A+F EH+ LYQRTSYSE+ AS
Sbjct: 797 SRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVARFIEHLTLYQRTSYSEIIAS 856
Query: 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
LWLSLRLQLL A I+ F+A MAV+GSRGN P +F TPGLVGLALSYAAP+VSLLG+FL+S
Sbjct: 857 LWLSLRLQLLGAMIVLFVAVMAVLGSRGNFPISFGTPGLVGLALSYAAPLVSLLGSFLTS 916
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1242
FTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP QGL+EF NVTMRY +LP AL+
Sbjct: 917 FTETEKEMVSIERVLQYMDVPQEEVSGRQSLSGKWPVQGLVEFHNVTMRYISTLPPALNH 976
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302
I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG+NI + P+R LR AV
Sbjct: 977 ISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCNGEILVDGININHLPIRKLRSHLAV 1036
Query: 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVG 1361
VPQSPFLF+GSLRDNLDP +++D +IW +LEKC VK EVE A GL++ VKESG S+SVG
Sbjct: 1037 VPQSPFLFQGSLRDNLDPLGLSEDWRIWEILEKCKVKAEVESAGGLDSNVKESGCSYSVG 1096
Query: 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1421
QRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N IS+ECKG+TVITIAHRISTVL+
Sbjct: 1097 QRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISTECKGVTVITIAHRISTVLD 1156
Query: 1422 MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
+D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1157 LDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1192
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204674|emb|CBI25172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 853/1143 (74%), Positives = 948/1143 (82%), Gaps = 69/1143 (6%)
Query: 362 CLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAF 421
CL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKFAF
Sbjct: 87 CLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKFAF 146
Query: 422 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSS 481
VSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F S
Sbjct: 147 VSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLFMS 206
Query: 482 WLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLAL 541
WLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCLAL
Sbjct: 207 WLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCLAL 266
Query: 542 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS-NF 599
FN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S NF
Sbjct: 267 FNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQFNF 326
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSIL
Sbjct: 327 KLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSILK 386
Query: 660 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DISLM
Sbjct: 387 EMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDISLM 446
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
VGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI+G
Sbjct: 447 VGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAILG 506
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLH 839
P M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+G
Sbjct: 507 PLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVG------------------------ 542
Query: 840 MQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWF 899
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SGWF
Sbjct: 543 IRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSGWF 602
Query: 900 ITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFY----------------- 941
IT+VICLSAILMQASRNGNDLWLSYWVD TTGSS T+YSTSFY
Sbjct: 603 ITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVLLVLIKEEFVKSMVE 662
Query: 942 ------------------------LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977
LVVLCIFC+ NSFLTLVRAFSFAFG LRAAV+VHNT
Sbjct: 663 HEQFYVNVQCFLNEFEANGVSFFLLVVLCIFCVINSFLTLVRAFSFAFGGLRAAVQVHNT 722
Query: 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYV 1037
LL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFILNILLAN VGLLGIA+VLSYV
Sbjct: 723 LLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFILNILLANIVGLLGIAIVLSYV 782
Query: 1038 QVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE 1097
QV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSPI+ASFTETL+GSSTIRAFK E
Sbjct: 783 QVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSPIFASFTETLDGSSTIRAFKCE 842
Query: 1098 DYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFS 1157
D F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +ISF+A MAVIGSR +LP +
Sbjct: 843 DLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALVISFVAMMAVIGSRDSLPISLG 902
Query: 1158 TPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217
TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+YMD+PQEEL G QSLSP+W
Sbjct: 903 TPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQYMDIPQEELNGCQSLSPNW 962
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+GRTGAGKSSILNALFRLTPIC
Sbjct: 963 PSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGIIGRTGAGKSSILNALFRLTPIC 1022
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRDNLDPF ++DDLKIW LE+CH
Sbjct: 1023 KGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRDNLDPFRVSDDLKIWKTLERCH 1082
Query: 1338 VKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
VKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKSSKVLCLDECTAN+DAQT+S+L
Sbjct: 1083 VKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKSSKVLCLDECTANIDAQTSSVL 1142
Query: 1397 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456
QNAI +EC+GMTVITIAHRISTVL+MD ILILD G LVEQGNPQ LLQD S FS F +A
Sbjct: 1143 QNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVEQGNPQVLLQDHSSRFSGFAKA 1202
Query: 1457 STM 1459
STM
Sbjct: 1203 STM 1205
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5001458|gb|AAD37023.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1604 bits (4153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 800/1130 (70%), Positives = 940/1130 (83%), Gaps = 34/1130 (3%)
Query: 332 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN 391
+SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VN
Sbjct: 46 RSFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVN 105
Query: 392 LANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMK 451
L NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK
Sbjct: 106 LCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMK 165
Query: 452 QKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511
KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATT
Sbjct: 166 LKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATT 225
Query: 512 PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571
PTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++
Sbjct: 226 PTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSK 285
Query: 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 631
FL C E+ + I +G F S+D+AV ++DA+C+W N EE+ N+ + QVS
Sbjct: 286 FLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEEDYNLTIKQVS 334
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDN 691
L +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPW+LSGT+R+N
Sbjct: 335 LRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWLLSGTVREN 394
Query: 692 ILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751
ILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR ALARAVYHG
Sbjct: 395 ILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRARFALARAVYHG 454
Query: 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 810
SD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+Q + + M+VVMDKG+
Sbjct: 455 SDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQVSNLSTHMIVVMDKGK 514
Query: 811 VKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQEKDVVSVSD 868
V W GS D+ S+ F TNEFD S H+ K++ + + ++E V +S+
Sbjct: 515 VNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIKEDGVDEISE 565
Query: 869 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 928
A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGNDLWLSYWVD
Sbjct: 566 AAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGNDLWLSYWVDK 625
Query: 929 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988
TG +VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L++K++NAP
Sbjct: 626 TGKG----------MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALISKLINAPTQ 675
Query: 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1048
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV FLLLL+PF
Sbjct: 676 FFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQVLFLLLLLPF 735
Query: 1049 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1108
W+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+ +F EH+
Sbjct: 736 WYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHL 795
Query: 1109 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1168
LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +F TPGLVGLALSY
Sbjct: 796 TLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSY 855
Query: 1169 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1228
AAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP GL+EF NV
Sbjct: 856 AAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPVHGLVEFHNV 915
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
TMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG NI
Sbjct: 916 TMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNI 975
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GL 1347
+ P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK VE+V GL
Sbjct: 976 SHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGGL 1035
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N ISSECKG+
Sbjct: 1036 DSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGV 1095
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1096 TVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1145
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1459 | ||||||
| UNIPROTKB|E1C368 | 1515 | ABCC10 "Uncharacterized protei | 0.522 | 0.503 | 0.353 | 8e-238 | |
| UNIPROTKB|E1BNL1 | 1490 | ABCC10 "Uncharacterized protei | 0.352 | 0.344 | 0.432 | 1.8e-216 | |
| UNIPROTKB|F1PF73 | 1490 | ABCC10 "Uncharacterized protei | 0.373 | 0.365 | 0.410 | 5.3e-213 | |
| RGD|1306696 | 1499 | Abcc10 "ATP-binding cassette, | 0.351 | 0.342 | 0.429 | 3e-212 | |
| UNIPROTKB|Q5T3U5 | 1492 | ABCC10 "Multidrug resistance-a | 0.352 | 0.344 | 0.426 | 3.8e-212 | |
| MGI|MGI:2386976 | 1501 | Abcc10 "ATP-binding cassette, | 0.350 | 0.341 | 0.425 | 5.5e-212 | |
| FB|FBgn0032018 | 1487 | CG7806 [Drosophila melanogaste | 0.816 | 0.801 | 0.355 | 6.7e-191 | |
| FB|FBgn0032456 | 1549 | MRP "Multidrug-Resistance like | 0.398 | 0.375 | 0.382 | 7.4e-187 | |
| UNIPROTKB|F1RRK8 | 1479 | LOC100736948 "Uncharacterized | 0.352 | 0.347 | 0.425 | 5.8e-184 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.413 | 0.385 | 0.377 | 4.8e-181 |
| UNIPROTKB|E1C368 ABCC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 8.0e-238, Sum P(3) = 8.0e-238
Identities = 278/786 (35%), Positives = 424/786 (53%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ + ++ +M RG +L+ +D+ LP + + + +CWQ
Sbjct: 228 DGESWLSRFFYAWMNPLMKRGYQWKLNQPQDVCLLPRKLQAARVCDRFYACWQKSHHAQE 287
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAI 323
T L+ + A+G + LGLLK+ +GF+GPLLLN L+ F++ L G + A+
Sbjct: 288 T-VRLLSVLHAAFGLRFYSLGLLKLAGSLLGFSGPLLLNLLVNFMESRQEPLSHGVLYAL 346
Query: 324 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L S + + Q+S+ +++ IY+K L V S F+ GEI FMS
Sbjct: 347 GLFAGSFVGALLRNQFSYEVQKVTLMVRAAVISAIYRKALRVGSTSLSCFTVGEIVNFMS 406
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
DT R VN SFH+ WSLPFQ + LYLLY QV AF+ GLA+ +LL+P+NK IAN I
Sbjct: 407 TDTSRLVNFCLSFHEVWSLPFQFAITLYLLYQQVGVAFLGGLALALLLVPINKVIANRIM 466
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
+ +M++ KD R++ E L+ IR +K Y WE+ FS+ + R+ E++ L KYLDA
Sbjct: 467 ESNAEMLEHKDARVKLMTEFLSGIRVIKFYAWEKHFSTRINTCRAKELQKLRAIKYLDAV 526
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLNSFPWV+NG ++A
Sbjct: 527 CVYLWAALPVVVSIVIFITYVLMGHQLTATKVFTALALVGMLILPLNSFPWVLNGTLEAK 586
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMA-VIMQDATCSWYCXXXXX 622
+S+ R+ RFL + E A SPS + + + D + V +++ + S
Sbjct: 587 VSLDRIQRFLELVDQDLEAYYALGSPSGTATAI-DIRGADFSWVPVKEESTS---QPLST 642
Query: 623 XXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQ 679
+L + KG L+ V+G+VGSGKSSLL +I GE++ G ++ Q
Sbjct: 643 GSLQLHIENLSVRKGMLLGVVGKVGSGKSSLLAAITGELIKQGGQVYICDLEQGFGLATQ 702
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQX 739
PWI T+R+NILFG+ YD + Y E ++AC L D++++ GD +GE GV LSGGQ
Sbjct: 703 EPWIQFTTVRENILFGRQYDARLYEEVVEACALSEDLNILPAGDQTEVGENGVTLSGGQK 762
Query: 740 XXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAIS 798
VY ++Y+LDD L+AVDA VA ++ I+G +LQ KTRILCTH + +
Sbjct: 763 ARIALARAVYQEKELYLLDDPLAAVDADVANHLMQKCILG--ILQHKTRILCTHRTEFLE 820
Query: 799 AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 858
AD +++MD G++ G AD+ + L + + + K + ++ ++ ++
Sbjct: 821 KADALLLMDNGRIIKTGPPADI-LPLVESVPKFKDMNKRRN-DKASVPADSDEQGQEEVI 878
Query: 859 QEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGN 918
+ + S+ D + + E++KEG ++ VYK Y G + L I S +LMQASRN +
Sbjct: 879 ETEAEESLQDKCL-LHKEEEKKEGALDFQVYKAYWLAMGSCLALSILFSLLLMQASRNIS 937
Query: 919 DLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
D WLS+W+ T +S STS L +F + ++ ++A A A+V V
Sbjct: 938 DWWLSHWISSISQTANTSVMASSTSLPSTKLLLFSIVG-LVSPIQALDTAPVPSNASVDV 996
Query: 975 HNTLLT 980
N LT
Sbjct: 997 -NFYLT 1001
|
|
| UNIPROTKB|E1BNL1 ABCC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1061 (378.5 bits), Expect = 1.8e-216, Sum P(3) = 1.8e-216
Identities = 225/520 (43%), Positives = 317/520 (60%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL V NS TL+RA FA G+L+AA +H LL +++ APV FFD TP GR+L
Sbjct: 967 FYLTVYATIAGVNSLCTLLRAVLFAAGTLQAAATLHRRLLGRVLMAPVTFFDSTPTGRVL 1026
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ DDSLPFILNILLAN GLLG+ IY ++Q Y
Sbjct: 1027 NRFSSDVACADDSLPFILNILLANAAGLLGLLAVLGFSLPWLLLLLPPLSIIYYRVQSHY 1086
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++SRELRRL S+S SP+Y +TL G +RA + F + + + L QR ++
Sbjct: 1087 RASSRELRRLGSLSLSPLYTHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFAAS 1146
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1147 ATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1202
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA 1238
+SSFT+TE +VS+ER+ EY D+PQE L W QG +EFQNV + Y+P LP
Sbjct: 1203 VSSFTQTEAMLVSVERLEEYSCDLPQEPRGQRPQLGISWLSQGSVEFQNVVLVYRPGLPN 1262
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ + +LR
Sbjct: 1263 ALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGMDTSQLELAELRS 1322
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGIS 1357
+ A++PQ PFLF G++R+NLDP + +D +W LE+CH+ E +E++G L+ + E G
Sbjct: 1323 QLAIIPQEPFLFSGTVRENLDPRGLYEDGALWQALEQCHLSEAIESMGGLDGELGEGGRR 1382
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ IS TV+TIAHR++
Sbjct: 1383 LSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTISKRFANKTVLTIAHRLN 1442
Query: 1418 TVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
T+LN D +L+L G + E G+P L S+F +++S
Sbjct: 1443 TILNSDRVLVLHAGRVAELGSPAALCTQPHSLFQQLLQSS 1482
|
|
| UNIPROTKB|F1PF73 ABCC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 5.3e-213, Sum P(3) = 5.3e-213
Identities = 228/555 (41%), Positives = 330/555 (59%)
Query: 906 LSA-ILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 964
LSA +L+ + RN L+ S + +S FYL V NS T +RA FA
Sbjct: 935 LSAQLLLFSPRN---LYTSVFPLPKTASNGSSDIRFYLTVYATIAGVNSLCTFLRAVLFA 991
Query: 965 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024
G+L+AA +H LL +++ APV FFD TP GR+LNRFSSD+ DDSLPF LNILLAN
Sbjct: 992 AGTLQAAATLHRRLLCRVLMAPVTFFDSTPAGRVLNRFSSDVACADDSLPFTLNILLANA 1051
Query: 1025 VGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1084
GLLG+ +Y ++Q YR++SRELRRL S++ SP+Y +T
Sbjct: 1052 AGLLGLLAVLGSGLPWLLLLLPVLSVLYYRVQRHYRASSRELRRLSSLTLSPLYTHLADT 1111
Query: 1085 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMA 1144
L G +RA + F + + + L QR ++ ++S IA +A
Sbjct: 1112 LAGLPVLRAAGATSRFEEENQRLLELNQRCQFAASATIQWLDIRLQLMGATVVSAIAGIA 1171
Query: 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVP 1203
++ + L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+P
Sbjct: 1172 LVQHQQGL----TNPGLVGLSLSYALSLTGLLSGLVSSFTQTETMLVSVERLEEYSCDLP 1227
Query: 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1263
QE L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GK
Sbjct: 1228 QEPQGQLPRLGVGWLTQGSVEFQDVVLVYRPGLPNALDGVTFRVQPGEKLGIVGRTGSGK 1287
Query: 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1323
SS+L LFRL G++L+DG++ + +LR + A++PQ PFLF G++R+NLDP +
Sbjct: 1288 SSLLLVLFRLLEPSSGRVLLDGVDTSQLELAELRSQLAIIPQEPFLFSGTVRENLDPQGL 1347
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
++D +W LE+CH+ E + ++G L+ + E G S S+GQRQL+CLARALL +K+LC+D
Sbjct: 1348 HEDRALWQALEQCHLSEVIVSLGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCID 1407
Query: 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1442
E TA+VD +T +LQ I TV+TIAHR++T+LN D +L+L G +VE +P L
Sbjct: 1408 EATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPAAL 1467
Query: 1443 LQDECSVFSSFVRAS 1457
S+F +++S
Sbjct: 1468 RSQPHSLFQQLLQSS 1482
|
|
| RGD|1306696 Abcc10 "ATP-binding cassette, subfamily C (CFTR/MRP), member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 3.0e-212, Sum P(3) = 3.0e-212
Identities = 225/524 (42%), Positives = 317/524 (60%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL V NS TL+RA FA G+L+AA +H+ LL +++ APV F+D TP GR+L
Sbjct: 970 FYLTVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLMAPVTFYDSTPSGRVL 1029
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ +DDSLPF+LNILLAN VGLLG+ IY +Q Y
Sbjct: 1030 NRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLLLPPLSFIYYGVQRRY 1089
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++ RELRRL S++ SP+Y+ +TL G +RA + F + + + L QR ++
Sbjct: 1090 RASFRELRRLGSLTLSPLYSHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASY 1149
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL LSYA + LL
Sbjct: 1150 ATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLVLSYALSLTGLLSGL 1205
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSLSP----DWPFQGLIEFQNVTMRYKP 1234
+SSFT+TE MVS+ER+ EY D+PQE G SP W QG +EFQ+V + Y+P
Sbjct: 1206 VSSFTQTEAMMVSVERLEEYSCDIPQEPH-GQPPQSPHQRVSWLTQGSVEFQDVVLVYRP 1264
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
LP AL + F +E G ++GIVGRTG+GKSS+ LFRL GQ+L+DG++ +
Sbjct: 1265 GLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPSAGQVLLDGVDTSQLELA 1324
Query: 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKE 1353
+LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+ E A+G L+ + E
Sbjct: 1325 ELRSQLAVIPQEPFLFSGTVRENLDPQGLHEDRALWQALEQCHLSEVAMAIGGLDGELGE 1384
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I TV+TIA
Sbjct: 1385 RGRDLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICRRFANKTVLTIA 1444
Query: 1414 HRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
HR++T+LN D +L+L G +VE +P L S+F +++S
Sbjct: 1445 HRLNTILNSDRVLVLQAGRVVELDSPSALRNQPHSLFRQLLQSS 1488
|
|
| UNIPROTKB|Q5T3U5 ABCC10 "Multidrug resistance-associated protein 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 3.8e-212, Sum P(3) = 3.8e-212
Identities = 222/520 (42%), Positives = 316/520 (60%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL V NS TL+RA FA G+L+AA +H LL +++ APV FF+ TP GRIL
Sbjct: 966 FYLTVYATIAGVNSLCTLLRAVLFAAGTLQAAATLHRRLLHRVLMAPVTFFNATPTGRIL 1025
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ DDSLPFILNILLAN GLLG+ +Y +Q Y
Sbjct: 1026 NRFSSDVACADDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSIMYYHVQRHY 1085
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++SRELRRL S++ SP+Y+ +TL G S +RA + F + + L QR ++
Sbjct: 1086 RASSRELRRLGSLTLSPLYSHLADTLAGLSVLRATGATYRFEEENLRLLELNQRCQFATS 1145
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1146 ATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1201
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA 1238
+SSFT+TE +VS+ER+ EY D+PQE L W QG +EFQ+V + Y+P LP
Sbjct: 1202 VSSFTQTEAMLVSVERLEEYTCDLPQEPQGQPLQLGTGWLTQGGVEFQDVVLAYRPGLPN 1261
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ + LR
Sbjct: 1262 ALDGVTFCVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTSQLELAQLRS 1321
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGIS 1357
+ A++PQ PFLF G++R+NLDP ++ D +W L++CH+ E + ++G L+ + E G S
Sbjct: 1322 QLAIIPQEPFLFSGTVRENLDPQGLHKDRALWQALKQCHLSEVITSMGGLDGELGEGGRS 1381
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I TV+TIAHR++
Sbjct: 1382 LSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICKRFANKTVLTIAHRLN 1441
Query: 1418 TVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
T+LN D +L+L G +VE +P TL S+F +++S
Sbjct: 1442 TILNSDRVLVLQAGRVVELDSPATLRNQPHSLFQQLLQSS 1481
|
|
| MGI|MGI:2386976 Abcc10 "ATP-binding cassette, sub-family C (CFTR/MRP), member 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 5.5e-212, Sum P(3) = 5.5e-212
Identities = 224/526 (42%), Positives = 320/526 (60%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL+V NS TL+RA FA G+L+AA +H+ LL +++ APV F+D TP GR+L
Sbjct: 971 FYLIVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLMAPVTFYDSTPSGRVL 1030
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ +DDSLPF+LNILLAN VGLLG+ +Y +Q +Y
Sbjct: 1031 NRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLLLPPLSFVYYSVQGYY 1090
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++ RELRRL S++ SP+Y+ +TL G +RA + F + + + L QR ++
Sbjct: 1091 RASFRELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASY 1150
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL LSYA + LL
Sbjct: 1151 ATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLVLSYALSLTGLLSGL 1206
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSL-SP-----DWPFQGLIEFQNVTMRY 1232
+SSFT+TE MVS+ER+ EY DVPQE Q L SP W QG +EFQ+V + Y
Sbjct: 1207 VSSFTQTEAMMVSVERLEEYSCDVPQEPHS--QPLQSPHQQRISWLTQGSVEFQDVVLVY 1264
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
+P LP AL + F +E G ++GIVGRTG+GKSS+ LFRL G++L+D ++
Sbjct: 1265 RPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAGRVLLDNVDTSQLE 1324
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFV 1351
+ +LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+ E A+G L+ +
Sbjct: 1325 LAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLSEVAVAMGGLDGEL 1384
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1411
E G + S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I TV+T
Sbjct: 1385 GERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICKRFANKTVLT 1444
Query: 1412 IAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
IAHR++T+LN D +L+L G +VE +P L S+F +++S
Sbjct: 1445 IAHRLNTILNSDRVLVLQAGRVVELDSPSALRNQPHSLFQQLLQSS 1490
|
|
| FB|FBgn0032018 CG7806 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1850 (656.3 bits), Expect = 6.7e-191, P = 6.7e-191
Identities = 457/1287 (35%), Positives = 692/1287 (53%)
Query: 216 FKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKL-LSCWQAQRSCNCTNPSLVRAI 273
F + ++ +GV +L EDL LP ++ + KL L+ Q+Q SL RA+
Sbjct: 238 FHWVQPLILKGVAGKLRKIEDLFDLPDALNITRLSEKLHLALSQSQ--------SLWRAL 289
Query: 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALGL--TSI 330
+G + +G+L+++ D GFAGPLLL L++ H D V ALGL +++
Sbjct: 290 HRCFGVEFYLIGILRLIADLSGFAGPLLLGGLLR-----QDHADPNQVYYYALGLFGSTL 344
Query: 331 LKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTV 390
L + T + + ++ IY+K L R + S+ ++ MS DTDR V
Sbjct: 345 LSAVCATHFDWRMAMVSMKMRVGVVNSIYRKALEARGLKESK---PDLLNLMSTDTDRIV 401
Query: 391 NLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMM 450
N SFH WS+PF++ LYLLY Q+ AF++G+ LLIP+N+W+A I + +M
Sbjct: 402 NSCISFHFFWSIPFKLFTTLYLLYLQLGAAFLAGVIFAALLIPINRWLAKRIGIFSSGLM 461
Query: 451 KQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWAT 510
KD R+ T E + + +K+ WE IF + + R E++ LS RKYLDA CV+FWAT
Sbjct: 462 TAKDARLSATTETMQGAKQIKINAWEDIFITKIRGLRQEELRFLSKRKYLDAMCVYFWAT 521
Query: 511 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 570
TP L L TFG+ LMG+ L A+ +T +AL LI PLN+FPWV+NGLI+A++SI+R+
Sbjct: 522 TPVLMCLLTFGVSVLMGNPLIASTTYTSVALLYMLIGPLNAFPWVLNGLIEAWVSIKRVQ 581
Query: 571 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDM--AVIMQDATCSWYCXXXXXXXXXX- 627
+ + + +G + D A ++Q C+ +C
Sbjct: 582 QLMDVPNLDYSSYYNPIMRGSGGSGAGDDAPLDAPKASVLQ-MKCASFCHDSDEQTSPTP 640
Query: 628 ---XXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYVPQVP 681
++ + G LV + G VG GKSS L++I+ + T G + + YVPQ P
Sbjct: 641 FRMKDINVDIKAGQLVCIEGPVGGGKSSFLSAIVANLQCTDGEVCVQELTTGFGYVPQSP 700
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXX 741
W+ GTIRDNI++G +D Q Y L AC L+ D+ ++ GGD+ +GE G LSGGQ
Sbjct: 701 WLQRGTIRDNIVWGAQFDEQWYKTVLHACALEEDLQIL-GGDLVGVGENGRTLSGGQRAR 759
Query: 742 XXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 800
VY +Y+LDDVLS++DA VAR I+ + I+ +L+ KTRI+ T N+Q A
Sbjct: 760 VALARAVYQDKKVYLLDDVLSSLDAHVARHIIKHCIL--RLLKHKTRIVVTRNIQLFFHA 817
Query: 801 DMVVVMDKGQV---KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQIL 857
+ ++ + GQ+ +++ S +L++ + D Q+ +R + + Q
Sbjct: 818 NQILQVKDGQLLPSEYMTQSIELSLD--------EDADDE---QEPTVRRRSVELSNQY- 865
Query: 858 LQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNG 917
+K + S+ ++E E R+ G + V+ Y K + + LS +LMQ +RN
Sbjct: 866 -DKKSLDSL------LLE-ELREYGHLSGNVFTCYWKAVTSPLAFTVLLSVVLMQLTRNL 917
Query: 918 NDLWLSYWV----------DT---------TGSSQTK--YSTSFYLVVLCIFCMFNSFLT 956
+D WL+YWV DT T ++T+ ++T FYL + + NS +T
Sbjct: 918 SDAWLAYWVTETTLDPHKNDTSLDHILMRPTVGNETESGHTTKFYLSIFTAIAVSNSLVT 977
Query: 957 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016
L RAF FA+ ++AA+ +H LL K++ A FFD T GRILNRFSSD +DDSLPFI
Sbjct: 978 LARAFLFAYAGIKAAIFMHEKLLKKVMFAKFNFFDITSVGRILNRFSSDTNTVDDSLPFI 1037
Query: 1017 LNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSP 1076
LNILLA GL+G IY LQ YR SR+++RL S + SP
Sbjct: 1038 LNILLAQLAGLVGALCVSLYAMPWLGLVIIPMVPIYLSLQQRYRHASRDIKRLSSNAMSP 1097
Query: 1077 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXXFI 1136
+Y FTETL G +TIR+ ++ F F+ E
Sbjct: 1098 LYTHFTETLQGLTTIRSMRASPRFQRDFQ--------VKLEESIKAQLTQSAAQQWLALR 1149
Query: 1137 ISFIATMAVIGSRGNLPA-TFS---TPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVS 1192
+ + T+ ++G G L A T S PGLVGL +SYA I LG+ L + ETE+E+V+
Sbjct: 1150 LQLLGTL-LVGGAGLLAAITASHTTNPGLVGLCISYALSITGQLGDLLHAVAETEQELVA 1208
Query: 1193 LERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1251
+ER+ +Y+ + +E+ + P WP QG++ F+ V + Y+ L AL I F E
Sbjct: 1209 VERIDQYLQLEEEQNASGSAEPPFGWPTQGVLSFREVQLSYREHLAPALRGITFQTEAFE 1268
Query: 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1311
++GIVGRTGAGK+S+L AL R+ P+ G+I +D +N+ P+ LR R V+ Q PFLFE
Sbjct: 1269 RIGIVGRTGAGKTSVLAALLRVAPLTHGEIRLDQVNLKTLPLSVLRERIGVITQEPFLFE 1328
Query: 1312 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLA 1369
G++R+NLDP H D +IW ++ + + GL+ V+ G + S GQRQL+CLA
Sbjct: 1329 GTVRENLDPRHGFYDSEIWHAIKNSAAATLLVQQLGGLDGKVETCGNNLSAGQRQLLCLA 1388
Query: 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1429
RALLK++KV+ +DE T+N+D ++ +Q A+ + K T++ IAHR+ + MD I++LD
Sbjct: 1389 RALLKNAKVVAIDEGTSNLDDESDLSIQQALRNAFKSCTLLFIAHRLRGLHAMDRIIVLD 1448
Query: 1430 HGHLVEQGNPQTLLQDECSVFSSFVRA 1456
G + E+GNPQ+L D ++F + A
Sbjct: 1449 DGRICEEGNPQSLASDSSTIFYGMLLA 1475
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| FB|FBgn0032456 MRP "Multidrug-Resistance like Protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 7.4e-187, Sum P(3) = 7.4e-187
Identities = 227/594 (38%), Positives = 329/594 (55%)
Query: 872 EIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 931
++IE E+ + G VE VYK+Y K G F+++ + + QA + G++LWL+ W +
Sbjct: 962 KLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVFQAFQIGSNLWLTQWANDQNV 1021
Query: 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL-FF 990
+ YL V F L G +AA +HN LL I+ V FF
Sbjct: 1022 ANDTGLRDMYLGVYGAFGFGQGVLAYFAVVIVYLGGFQAAKTIHNELLAVIIRGSVCRFF 1081
Query: 991 DQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXX 1050
D TP GR+LN FS D+ ++D+ LP ++ + +L
Sbjct: 1082 DITPIGRLLNSFSGDMDVVDEELPATMDSFMTFIFMVLATIVVISLSTPIFLAVIVPIAF 1141
Query: 1051 IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVL 1110
+Y Q FY +TSR+L RL+SVSRSPIY+ F+ET+ G+STIRA+ D F+ + V
Sbjct: 1142 LYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDK 1201
Query: 1111 YQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1170
Q Y II F + AV+G + N PGLVGL++SYA
Sbjct: 1202 NQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTN-------PGLVGLSVSYAL 1254
Query: 1171 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE---ELCGYQSLSPDWPFQGLIEFQN 1227
+ L + ++ E +VS+ER+ EY + QE EL ++ +WP +G +EFQN
Sbjct: 1255 QVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQDKNKPKNWPQEGRVEFQN 1314
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287
+RY+ L L ++F I+GG +VGIVGRTGAGKSS+ ALFR+ GG+I +DG++
Sbjct: 1315 FQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVD 1374
Query: 1288 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AV 1345
I + + LR R ++PQ P LF GSLR NLDPF + D +IW LE H+K V+ A
Sbjct: 1375 IASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAA 1434
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
GL + E G + SVGQRQL+CLARALL+ +KVL LDE TA VD +T ++Q I +E K
Sbjct: 1435 GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFK 1494
Query: 1406 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
TV+TIAHR++T+L+ D++++LD G ++E +P LL + S F S + + +
Sbjct: 1495 ECTVLTIAHRLNTILDSDKVIVLDKGQIIEFASPTELLDNPKSAFYSMAKDANL 1548
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| UNIPROTKB|F1RRK8 LOC100736948 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 5.8e-184, Sum P(4) = 5.8e-184
Identities = 223/524 (42%), Positives = 316/524 (60%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL V NSF TL+RA FA G+LRAA +H LL +++ APV FFD TP GR+L
Sbjct: 952 FYLTVYATIAGVNSFCTLLRAVLFAAGTLRAAATLHRRLLCRVLMAPVTFFDSTPTGRVL 1011
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ DDSLPFILNILLAN GLLG+ IY ++Q Y
Sbjct: 1012 NRFSSDVACADDSLPFILNILLANTAGLLGLLVVLGSGLPWLLLLLPPLSAIYYRVQRHY 1071
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++SRELRRL S++ SP+Y +TL G +RA + F + + + L QR ++
Sbjct: 1072 RASSRELRRLGSLTLSPLYTHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASS 1131
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1132 ATMQWLDIRLQLMGATVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1187
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKP 1234
+SSFT+TE +VS+ER+ EY D+PQE G L W QG +EFQ+V + Y+P
Sbjct: 1188 VSSFTQTETMLVSVERLEEYSCDLPQEPRGQWPQGPHQLGISWLSQGSVEFQDVVLVYRP 1247
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
LP AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ +
Sbjct: 1248 GLPNALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTSQLELA 1307
Query: 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKE 1353
+LR + A++PQ PFLF G++R+NLDP + +D +W LE+CH+ + ++G L+ + E
Sbjct: 1308 ELRSQLAIIPQEPFLFSGTVRENLDPRGLYEDRALWQALEQCHLSGVLRSMGGLDAELGE 1367
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G S S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I TV+TIA
Sbjct: 1368 GGRSLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICQRFANKTVLTIA 1427
Query: 1414 HRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
HR++T+LN D +L+L G + E +P L S+F +++S
Sbjct: 1428 HRLNTILNSDRVLVLQAGRVAELDSPAALRSQPHSLFQQLLQSS 1471
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| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 4.8e-181, Sum P(3) = 4.8e-181
Identities = 236/625 (37%), Positives = 343/625 (54%)
Query: 830 STNEFDTSL-HMQKQEMRTNASSANKQILLQ-EKDVVSVSDDAQEIIEVEQRKEGRVELT 887
ST + + SL H Q+ R + K L+ +KD Q +IE E + GRV+ +
Sbjct: 926 STLKRENSLRHSQRHSKRNGSVKVRKNSSLRAQKD--PEDKKGQRLIEKEMMETGRVKFS 983
Query: 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS--SQT--KYSTSFYLV 943
VY Y GW+ + + + G +LWLS W D + +QT + +
Sbjct: 984 VYLQYLSAMGWWYVGFSFVFYFIQNVAVIGQNLWLSDWTDDSIEYFNQTYPNHIRDTRIG 1043
Query: 944 VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFS 1003
V + FL A GS+ A+ +H +LLT I+ P++FFD TP GRI+NRF+
Sbjct: 1044 VFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTNILKVPMMFFDTTPSGRIVNRFA 1103
Query: 1004 SDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTS 1063
D++ +D+ +P + +G+LG +Y +Q FY +TS
Sbjct: 1104 KDIFTVDEMIPMSFRSWILCLLGVLGTLFVICLATPIFTAVVVPMAVVYYFVQRFYVATS 1163
Query: 1064 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXX 1123
R+LRRLDSVSRSPIY+ F ET++G S IRA+ +D F+ ++ + ++ Y
Sbjct: 1164 RQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFLKHNEDTIDQNLKSVYPWIVSNR 1223
Query: 1124 XXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSF 1183
++ F A AVI SR +L + GLVGL++SYA + L N+L
Sbjct: 1224 WLAMRLESLGNLVVFFAALFAVI-SRDSLNS-----GLVGLSISYALNVTQTL-NWLVRM 1276
Query: 1184 T-ETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEFQNVTMRYKPSLPAAL 1240
T E E +V++ERV EY ++ Q E S+ P DWP G I F++ +RY+P L L
Sbjct: 1277 TSELETNIVAVERVREYAEI-QNEAPWVTSVRPPDDWPSAGNIRFEDYKVRYRPELELVL 1335
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
H + I+ ++GIVGRTGAGKSS+ N LFR+ G+IL+D ++I + DLR R
Sbjct: 1336 HGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGRILIDDIDIATLGLHDLRSRL 1395
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358
++PQ P LF G+LR NLDPF D +IWSVLE H+KE V + GLE V E G +
Sbjct: 1396 TIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKEYVRGLPTGLEHEVSEGGENL 1455
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
S+GQRQL+CLARALL+ S++L LDE TA VD +T ++Q+ I E TV+TIAHR++T
Sbjct: 1456 SLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQSTIRREFSHCTVLTIAHRLNT 1515
Query: 1419 VLNMDEILILDHGHLVEQGNPQTLL 1443
+L+ +++LD G +VE +P LL
Sbjct: 1516 ILDSSRVMVLDSGKIVEFDSPNELL 1540
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5T3U5 | MRP7_HUMAN | No assigned EC number | 0.3912 | 0.8361 | 0.8176 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3435 | 0.8368 | 0.8059 | yes | no |
| Q9SKX0 | AB13C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6516 | 0.9506 | 0.9836 | yes | no |
| Q8R4P9 | MRP7_MOUSE | No assigned EC number | 0.3768 | 0.8622 | 0.8381 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | ATMRP11 | ATMRP11; ATPase, coupled to transmembrane movement of substances; member of MRP subfamily ; Pump for glutathione S-conjugates (By similarity) (1251 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT4G08455 | BTB/POZ domain-containing protein; BTB/POZ domain-containing protein; FUNCTIONS IN- protein bin [...] (243 aa) | • | 0.821 | |||||||
 | CYP705A32 | CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; m [...] (526 aa) | • | 0.786 | |||||||
 | AT1G12570 | glucose-methanol-choline (GMC) oxidoreductase family protein; glucose-methanol-choline (GMC) ox [...] (572 aa) | • | 0.716 | |||||||
 | HAG2 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone ac [...] (467 aa) | • | 0.677 | |||||||
 | AT1G77540 | H3/H4 histone acetyltransferase; Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT [...] (114 aa) | • | 0.655 | |||||||
 | AT2G20270 | glutaredoxin family protein; glutaredoxin family protein; FUNCTIONS IN- electron carrier activi [...] (179 aa) | • | 0.599 | |||||||
 | ABC1At | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa) | • | 0.597 | |||||||
 | EIF3K | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K); translation initiation factor; Encodes ini [...] (226 aa) | • | 0.510 | |||||||
 | PDR13 | PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; PDR13; FUNCTIONS IN [...] (1390 aa) | • | • | 0.451 | ||||||
 | AT5G44410 | FAD-binding domain-containing protein; FAD-binding domain-containing protein; FUNCTIONS IN- ele [...] (535 aa) | • | 0.435 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1459 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-177 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-104 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-94 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-75 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-72 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-70 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-67 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-66 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-63 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-63 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-60 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-60 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-59 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-56 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-56 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-55 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-55 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-54 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-53 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-53 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-51 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-51 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-49 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-47 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-46 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-45 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-45 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-44 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-44 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-44 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-42 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-42 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-41 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-40 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-38 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-38 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-36 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-35 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-35 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-35 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-34 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-34 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-31 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-31 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-31 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-30 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-29 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-28 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-28 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-26 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-26 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-26 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-26 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-25 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-25 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-25 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-25 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-25 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-25 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-24 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-24 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-24 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-24 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-24 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-23 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-23 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-23 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-22 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-21 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-21 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-20 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-20 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-19 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-19 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-18 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-18 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-18 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-17 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-17 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-17 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-17 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-17 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-16 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-16 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-16 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-16 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-16 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-16 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-16 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-16 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-16 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-14 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-13 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-12 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-09 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-09 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-08 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 5e-04 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 5e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 8e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 0.001 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.002 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 809 bits (2092), Expect = 0.0
Identities = 432/1227 (35%), Positives = 675/1227 (55%), Gaps = 70/1227 (5%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIA 324
PSL + + +G ++ K ++D + F GP +L+ LI+F+ GY
Sbjct: 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGL 363
Query: 325 LGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L + + L++ QY FH+ + +++++++M +Y+K L + + R + GEI MS
Sbjct: 364 LFVCACLQTLILHQY-FHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMS 422
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
VD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ +L++P+N +A
Sbjct: 423 VDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
MK KD RI+ EIL I+ LK+Y WE F + R E+K L YL A
Sbjct: 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
F W TP L +L TF ++ + LDA F LALFN L PLN P VI+ ++
Sbjct: 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQ 602
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
A +S++RL FL ELE + I G N ++ + +AT +W
Sbjct: 603 ASVSLKRLRIFLS----HEELEPDSIERRTIKPGEGN------SITVHNATFTW----AR 648
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G +H GS+AYVPQ
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA 708
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + ++R+NILFGK + + Y + L+AC L D+ ++ GD IGEKGVNLSGGQ+ R
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 800
++LARAVY +DIY+ DD LSAVDA V + I + I +L+ KTRIL TH + +
Sbjct: 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828
Query: 801 DMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 858
D+++VM G++ +GS +L ++ F T D + S K+ L
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKL 888
Query: 859 QEKDVVSVSDDAQE-------------------------------------IIEVEQRKE 881
E + + V+D + ++E ++ +
Sbjct: 889 IE-NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQT 947
Query: 882 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFY 941
G+VEL+VY +Y K G FIT + + S ++ WLS W D + T+ +TS
Sbjct: 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR 1007
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
L V + F + + + G ++A+ +H LL + +P+ FF++TP G ++NR
Sbjct: 1008 LSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNR 1067
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
FS +L +D +P ++ + + + ++G +V+ +++ P +Y +Q FY +
Sbjct: 1068 FSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
+SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A
Sbjct: 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187
Query: 1122 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1181
+ WL++RL+ + I+ F A AVI R +L + GLVGL++SY+ + L +
Sbjct: 1188 NRWLAVRLECVGNCIVLFAALFAVIS-RHSL-----SAGLVGLSVSYSLQVTFYLNWLVR 1241
Query: 1182 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEFQNVTMRYKPSLPAA 1239
+E E +V++ER+ EY + +E Q +P WP +G +EF+N +RY+ L
Sbjct: 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV 1301
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLNI + DLR +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1357
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L+ E G +
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 1418 TVLNMDEILILDHGHLVEQGNPQTLLQ 1444
T+++ +++LD G + E G P LLQ
Sbjct: 1482 TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 800 bits (2069), Expect = 0.0
Identities = 432/1259 (34%), Positives = 698/1259 (55%), Gaps = 41/1259 (3%)
Query: 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICC 275
F + +M G + L +D+ L T T + CW + P L+RA+
Sbjct: 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKK--PKPWLLRALNN 297
Query: 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ G + G K+ ND F GPLLLN L++ +Q G GY+ A ++ + +L
Sbjct: 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLC 357
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+ QY ++ ++ +LRS+++ +++K L + R +F+ G+I M+ D + +
Sbjct: 358 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ 417
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
H WS PF+I +A+ LLY Q+ A + G + +L+ P+ +I + + T++ +++ D+
Sbjct: 418 LHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477
Query: 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 515
RI E+L + T+K Y WE F S + R E+ + L A+ F + P L
Sbjct: 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537
Query: 516 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
++ +FG+F L+G L A FT L+LF L PL P +I ++A +S++RL L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-- 595
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635
E N P + GL A+ +++ SW E L+ ++L +P
Sbjct: 596 --LAEERVLLPNPP--LEPGLP-------AISIKNGYFSWDSKAERP---TLSNINLDVP 641
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 694
GSLVA++G G GK+SL++++LGE+ + S+ G++AYVPQV WI + T+RDNILF
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701
Query: 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 754
G +DP+ Y + L D+ L+ GGD+ IGE+GVN+SGGQ+ R+++ARAVY SD+
Sbjct: 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814
Y+ DD LSA+DA V R + I + KTR+L T+ + +S D ++++ +G +K
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
Query: 815 GSSADLAVS------LYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVS--- 865
G+ +L+ + L E+ ++ + ++ AN +KD S
Sbjct: 821 GTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880
Query: 866 VSDDAQEIIEVEQRKEGRVELTVYKNY-AKFSGWFITLVICLSAILMQASRNGNDLWLSY 924
+ +I+ E+R+ G V V + Y G ++ +++ L +L + R + WLS
Sbjct: 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940
Query: 925 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984
W D + FY ++ + +TL+ ++ SL AA ++H+ +L I+
Sbjct: 941 WTDQGTPKT--HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044
AP+ FF P GRI+NRF+ DL ID ++ +N+ L LL V++ V L
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104
++P ++ +Y+ST+RE++RLDS++RSP+YA F E LNG STIRA+K+ D MA+
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAEI 1117
Query: 1105 KEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLV 1162
+ R + ++++ WL++RL+ L +I A+ AV+ R A F++ +
Sbjct: 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFAS--TM 1175
Query: 1163 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS--LSPDWPFQ 1220
GL LSYA I SLL L + E + ++ERV Y+D+P E ++ P WP
Sbjct: 1176 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSS 1235
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G I+F++V +RY+P LP LH ++F I +VGIVGRTGAGKSS+LNALFR+ + G+
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
IL+DG +I + DLR ++PQ+P LF G++R NLDPF+ ++D +W LE+ H+K+
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKD 1355
Query: 1341 EVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+ ++GL+ V E+G +FSVGQRQL+ LARALL+ SK+L LDE TA VD +T +++Q
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
I E K T++ IAHR++T+++ D IL+LD G +VE P+ LL +E S FS V+++
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 743 bits (1919), Expect = 0.0
Identities = 431/1272 (33%), Positives = 710/1272 (55%), Gaps = 52/1272 (4%)
Query: 207 NQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW--QAQRSCNC 264
S + + F + +M G K + +D+ L T + CW +++R
Sbjct: 231 YASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRP--- 287
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIA 324
P L+RA+ + G + G+ K+ +D F GP++L+ L++ +Q+G GYV A
Sbjct: 288 -KPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFL 346
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ ++QY ++ ++ +LRS+++ I+ K L + R F+ G++ ++
Sbjct: 347 IFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITT 406
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D + +A H WS PF+I V++ LLY Q+ A + G I LLIP+ I +
Sbjct: 407 DANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRK 466
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
T++ ++ D+R+ EIL + T+K Y WE+ F S + R+ E+ + L A+
Sbjct: 467 LTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
F + P + +L +FG+F L+G L A FT L+LF L SPLN P +++ +++A +
Sbjct: 527 SFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANV 586
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 624
S++R+ L E A N P + G A+ +++ SW + +
Sbjct: 587 SLQRIEELL----LSEERILAQNPP--LQPGAP-------AISIKNGYFSW---DSKTSK 630
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGSIAYVPQVP 681
L+ ++L +P GSLVA++G G GK+SL++++LGE L+H S+ GS+AYVPQV
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAETSSVVIRGSVAYVPQVS 688
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+R+NILFG +++ + Y + L D+ L+ G D+ IGE+GVN+SGGQ+ R
Sbjct: 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAAD 801
+++ARAVY SDIY+ DD LSA+DA VA + ++ M + KTR+L T+ + + D
Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVF-DSCMKDELKGKTRVLVTNQLHFLPLMD 807
Query: 802 MVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANK-----Q 855
++++ +G +K G+ A+L+ SG + + M QE+ TN + K
Sbjct: 808 RIILVSEGMIKEEGTFAELS---KSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864
Query: 856 ILLQEKDVVSVSDDAQE---IIEVEQRKEGRVELTVYKNYAK-FSGWFITLVICLSAILM 911
I + E+++ S + +++ E+R+ G + V Y K G ++ +++ + +
Sbjct: 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTT 924
Query: 912 QASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 971
+ R + WLS W D S+ YS FY+VV + +T +F SL AA
Sbjct: 925 EVLRVSSSTWLSIWTDQ--STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAA 982
Query: 972 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIA 1031
++H+ +L I+ AP+LFF P GR++NRFS D+ ID ++ ++N+ + LL
Sbjct: 983 KRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042
Query: 1032 VVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTI 1091
++ V L ++P ++ +Y+STSRE+RRLDSV+RSPIYA F E LNG S+I
Sbjct: 1043 ALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102
Query: 1092 RAFKSEDYFMAKFKEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-R 1149
RA+K+ D MAK + R + + +++ WL++RL+ L +I AT AV+ +
Sbjct: 1103 RAYKAYDR-MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGN 1161
Query: 1150 GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209
A F++ +GL LSY I +LL L ++ E + S+ERV Y+D+P E
Sbjct: 1162 AENQAGFAS--TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAI 1219
Query: 1210 YQSLSP--DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1267
++ P WP +G I+F++V +RY+P LP LH ++F + +VG+VGRTGAGKSS+L
Sbjct: 1220 IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279
Query: 1268 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1327
NALFR+ + G+I++D ++ + DLR +++PQSP LF G++R N+DPF ++D
Sbjct: 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA 1339
Query: 1328 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+W LE+ H+K+ ++ GL+ V E G +FSVGQRQL+ LARALL+ SK+L LDE T
Sbjct: 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445
A+VD +T S++Q I E K T++ IAHR++T+++ D+IL+L G ++E +PQ LL
Sbjct: 1400 ASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
Query: 1446 ECSVFSSFVRAS 1457
+ S F V ++
Sbjct: 1460 DTSAFFRMVHST 1471
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 570 bits (1471), Expect = e-177
Identities = 313/888 (35%), Positives = 477/888 (53%), Gaps = 62/888 (6%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 679
E E V+L VS+ +P+G L V+G GSGKS+LL S+L + ++ G + A SIAYVPQ
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
WI++ T+R NILF D ++ ++ L+ D++ + GG IGEKGVNLSGGQ+
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
AR++LARAVY D+Y+LDD LSA+DA V ++ +G + KTR+L TH V +
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPR 847
Query: 800 ADMVVVMDKGQVKWIGSSADLA-VSLYSGFW-------------STNEFDTSLHMQKQEM 845
AD VV + G+V++ GSSAD SLY+ + E +
Sbjct: 848 ADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAV 907
Query: 846 RTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG----WFIT 901
A ++ + D ++ A ++ E++ G V + Y Y +F G
Sbjct: 908 DHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFV 967
Query: 902 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 961
L L+ S + +WLS W +T S K S + YL V + + ++ F
Sbjct: 968 LATFAVTELVTVS---SGVWLSMW--STRS--FKLSAATYLYVY-LGIVLLGTFSVPLRF 1019
Query: 962 SFAFGSLR-AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1020
++ ++R + +H LL + + FFD TP GRILNRFS D+ ++D++LP L
Sbjct: 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL 1079
Query: 1021 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1080
L + +V S Q F L+ LVP ++Y +L FY S +RE+RR+ SV++SP++
Sbjct: 1080 LQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTL 1139
Query: 1081 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFI 1140
E L GS+TI A+ M + + + SY E A+ WL +R++ L+ +++ I
Sbjct: 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVI 1199
Query: 1141 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200
A + VIG+ L AT GLV L+L+ A + L + E +M S+ER+L Y
Sbjct: 1200 ALIGVIGTM--LRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257
Query: 1201 D-VPQEEL--------------------CGYQSLSPDWPFQ--------GLIEFQNVTMR 1231
D VP E++ G + P P G + F+ V MR
Sbjct: 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317
Query: 1232 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1291
Y+ LP L ++F I +VGIVGRTG+GKS++L R+ +CGG+I V+G I
Sbjct: 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLET 1349
+R+LR +F+++PQ P LF+G++R N+DPF ++W+ LE ++E V E+ G+++
Sbjct: 1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDS 1437
Query: 1350 FVKESGISFSVGQRQLICLARALLK-SSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
V E G ++SVGQRQL+C+ARALLK S + +DE TAN+D +Q + S T
Sbjct: 1438 RVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYT 1497
Query: 1409 VITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456
VITIAHR+ TV D+I+++DHG + E G+P+ L+ + S+F S V A
Sbjct: 1498 VITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 330 bits (850), Expect = e-104
Identities = 115/221 (52%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV++RY+P+LP L +I+F+I+ G +VGIVGRTG+GKSS+L ALFRL + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
IL+DG++I + DLR R +++PQ P LF G++R NLDPF D ++W LE+ +KE
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1341 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
VE++ GL+T V+E G + SVGQRQL+CLARALL+ SK+L LDE TA+VD +T +++Q
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439
I K TV+TIAHR+ T+++ D IL+LD G +VE +P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (834), Expect = e-102
Identities = 107/205 (52%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Query: 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665
+ ++DA+ +W + E+E + L ++L +PKG LVA++G VGSGKSSLL+++LGE+
Sbjct: 1 ISVEDASFTW-DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
GS+ GSIAYV Q PWI +GTIR+NILFGK +D + Y + +KAC L+ D+ ++ GD+
Sbjct: 60 GSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
IGEKG+NLSGGQ+ R++LARAVY +DIY+LDD LSAVDA V R I N I+G + K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 786 TRILCTHNVQAISAADMVVVMDKGQ 810
TRIL TH +Q + AD +VV+D G+
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 315 bits (808), Expect = 5e-94
Identities = 141/524 (26%), Positives = 263/524 (50%), Gaps = 18/524 (3%)
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
L++L + + L ++++ + + + L K++ P+ FFD+ G +++
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQF 1057
R ++D+ + + + +L ++ + + L+G V+L + LLL++P + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL---VLS 170
Query: 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYS 1117
SR+L R + + A E+L+G I+AF +ED + +F+E +R +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 1118 ELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1177
L+ + LL++ + + T G + + Y +++ +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL----TVGALAAFILYLLRLLTPIL 286
Query: 1178 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP 1237
+ ++ + ER+ E +D E P G IEF+NV+ Y P
Sbjct: 287 QLGEVVSLLQRASAAAERLFELLDEEPEVE---DPPDPLKDTIGSIEFENVSFSYPGKKP 343
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
L DI+F+IE G +V IVG +G+GKS+++ L RL G+IL+DG++I + + LR
Sbjct: 344 V-LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKES 1354
R +V Q P LF G++R+N+ + D +I L+ + E + + G +T V E
Sbjct: 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER 462
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1414
G++ S GQRQ + +ARALL++ +L LDE T+ +D +T +++Q+A+ KG T + IAH
Sbjct: 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
Query: 1415 RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458
R+ST+ N D I++LD+G +VE+G + LL +++ +A
Sbjct: 523 RLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-75
Identities = 154/529 (29%), Positives = 256/529 (48%), Gaps = 32/529 (6%)
Query: 933 QTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
ST L L + +F + L L+R + A R +++ ++ P+ +F+
Sbjct: 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 992 QTPGGRILNRFSSDLYMIDDSLP-FILNILLANFVGLLGIAVVLSY-------VQVFFLL 1043
+ G I++R +L I + L IL +++ L+ +AV+ Y V L
Sbjct: 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305
Query: 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103
++ Q R +R+L + + ET+ G T++A +E F ++
Sbjct: 306 NVLITLIF----QPLLRRKTRKLIEESAE----QQSFLVETIKGIETVKALAAEPRFRSQ 357
Query: 1104 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV- 1162
+ + + +L L+ LL +S + + G+ L + LV
Sbjct: 358 WDNRLAKQVNIGFKTEKLALILNTIKSLL--QQLSSVLIL-WFGAILVLEGELTLGQLVA 414
Query: 1163 --GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220
LA + +PI L + F + + V+LER+ + +D P E+ G ++L Q
Sbjct: 415 FNMLAGYFISPITRLS-QLWTDFQQAK---VALERLGDILDTPPEQ-EGDKTLIHLPKLQ 469
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV+ RY P P L D++ I G +V IVGR+G+GKS++L L L G+
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVK 1339
IL+DG+++ + + LR + V Q PFLF GS+R+N+ + + I +
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
E +E + G +T V E G + S GQRQ + LARALL K+L LDE T+ +D +T +I+
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
+ +G TVI IAHR+ST+ + D I++LD G +VEQG+ + LL
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 2e-72
Identities = 96/223 (43%), Positives = 141/223 (63%), Gaps = 16/223 (7%)
Query: 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276
WP G IE +N+++RY P LP L +++F ++ G ++GIVGRTGAGKS+++ ALFR
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
G+I +DG++I P+ DLR ++PQ P LF G++R NLDPF D +I+ L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
V E G++ S GQRQL+CLARALLK +VL LDE TA++D T +++
Sbjct: 119 --------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 1397 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439
Q I E T++TIAHR+ T+++ D+IL++D G + E +P
Sbjct: 165 QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 1e-70
Identities = 167/542 (30%), Positives = 286/542 (52%), Gaps = 31/542 (5%)
Query: 937 STSFYLVVLCIFCMFNSFLTL--VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTP 994
TS Y + +S L L R L + ++H +L ++ AP+ +
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 995 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1054
GRILNRF+ D+ +IDD LP L + + +LG V+S +Q + + +P I+
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRT 1114
L+ ++ TS++L++L+S +RSPI++ +L G TIRAF + YF F + + L+
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 1115 SYSELTASLWLSLRLQLLAAFIISFIA-TMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1173
+ L+ W +R+ ++ F+ FIA T IG+ + G VG+ L+ A I+
Sbjct: 1101 WFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGTNQD------GEGEVGIILTLAMNIL 1152
Query: 1174 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE----------------LCGYQSLSPDW 1217
S L ++S + + M S+ RV +++D+PQEE + W
Sbjct: 1153 STLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCW 1212
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P G ++ Q +T +Y + A L D++F++EGG +VG++GRTG+GKS++L+AL RL
Sbjct: 1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST- 1271
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
G+I +DG++ + ++ R F V+PQ F+F G+ R NLDP+ D +IW V E+
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVG 1331
Query: 1338 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
+K +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T I
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
++ + TVI HR+ +L + L+++ + + + Q LL +E S+F +
Sbjct: 1392 IRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAMS 1450
Query: 1456 AS 1457
A+
Sbjct: 1451 AA 1452
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 1e-67
Identities = 181/647 (27%), Positives = 305/647 (47%), Gaps = 83/647 (12%)
Query: 222 VMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPY 281
++ +G ++L+ D+ +P+ +L W + + NP L+ A+ + + +
Sbjct: 23 ILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82
Query: 282 ICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-------GYVLAIALGLTSILKSF 334
+ G+L ++ PLLL ++I S Y LA+ L L I+++
Sbjct: 83 VFYGILLYFGEATKAVQPLLLGRII-----ASYDPFNAPEREIAYYLALGLCLLFIVRTL 137
Query: 335 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAER--SEFSDGEIQTFMSVDT---DRT 389
F L L +++R ++ ++IY+K L +L+ R + S G++ + +S + D
Sbjct: 138 LLHPAIFGLHHLGMQMRIALFSLIYKKTL--KLSSRVLDKISTGQLVSLLSNNLNKFDEG 195
Query: 390 VNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKM 449
+ LA H W P Q+ + + L++ ++ GL ILL + + +K
Sbjct: 196 LALA---HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKR 252
Query: 450 MKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509
+ ER+ T EI+ +I+++K Y WE+ + R E+K TRK A+ +F++
Sbjct: 253 AGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELK--LTRKI--AYLRYFYS 308
Query: 510 TTPTLFSLFTFGLFALMGHQLDAAM----VFT----CLALFNSLISPLNSFPWVINGLID 561
+ FS F +++ + L + +FT C+ L ++ FP I D
Sbjct: 309 SA-FFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVT---RQFPGAIQTWYD 364
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW------ 615
+ +I ++ FL EYK LE +N V M + T SW
Sbjct: 365 SLGAITKIQDFLCKEEYK-TLE---------------YNLTTTEVEMVNVTASWDEGIGE 408
Query: 616 ------YCNNEEEQ----------------NVVLNQVSLCLPKGSLVAVIGEVGSGKSSL 653
N +Q VL +S L KG L+AV G GSGKSSL
Sbjct: 409 LFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSL 468
Query: 654 LNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713
L I+GE+ + G I SG I++ PQ WI+ GTI+DNI+FG +YD Y+ +KAC L+
Sbjct: 469 LMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLE 528
Query: 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
DI+L D +GE G+ LSGGQRAR++LARAVY +D+Y+LD + +D + I
Sbjct: 529 EDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588
Query: 774 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 589 ESCLC-KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 2e-66
Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 4/227 (1%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV Y P L DINF+I+ G V IVG TGAGK++++N L R GQ
Sbjct: 1 GEIEFENVNFSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-CHVK 1339
IL+DG++I + + LR VV Q FLF G++ +N+ N + K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ + + G +T + E+G + S G+RQL+ +ARA+L+ K+L LDE T+N+D +T ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
A+ KG T I IAHR+ST+ N D+IL+LD G ++E+G LL
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 3e-63
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 39/210 (18%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+NV+ Y L D++ TI+ G +V IVG +G+GKS++L L RL G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG+++ + + LR A VPQ PFLF G++R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
S GQRQ I +ARALL+ +L LDE T+ +D +T +++ A+ +
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1403 ECKGMTVITIAHRISTVLNMDEILILDHGH 1432
KG TVI IAHR+ST+ + D I++LD G
Sbjct: 142 LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 6e-63
Identities = 159/537 (29%), Positives = 267/537 (49%), Gaps = 36/537 (6%)
Query: 926 VDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985
+DT G + + + + +C+ + +S +R SF + R +++ L ++
Sbjct: 188 IDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ 247
Query: 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV---GLLGIAVVLSYVQVFFL 1042
+ FFD+ G + +R SSD + SL +N+LL N V GLLG + LS
Sbjct: 248 DLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 1043 LLLVPFWFIYSK-LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1101
L+ +P F+ K Y+ S EL+ ++V+++ A E L+G T+R+F +E+
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEA 363
Query: 1102 AKFK---EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG---SRGNLPAT 1155
++FK E + + LW + L +L ++ + V+ S GNL +
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL-VS 422
Query: 1156 FSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLS 1214
F L Y + + ++ + + + E+V EY+D P L G +L+
Sbjct: 423 F---------LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLA 471
Query: 1215 PDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272
P +GLIEFQ+V+ Y +P +P L + FT+ G V +VG +G+GKS++ L
Sbjct: 472 PLN-LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
Query: 1273 LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWS 1331
L GGQ+L+DG+ ++ L + A+V Q P LF GS+R+N+ D +I +
Sbjct: 530 LYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMA 589
Query: 1332 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ + + + G +T V E G S GQ+Q I +ARAL++ +VL LDE T+ +D
Sbjct: 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Query: 1390 AQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
A+ +LQ S TV+ IAHR+STV D+IL+L G +VE G + L++D+
Sbjct: 650 AECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 1e-60
Identities = 104/238 (43%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G I+ ++ +RY+ +L L + I+ G +VGI GRTG+GKSS+ A FR+ I G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
I++DG++I P+ LR R +++ Q P LF GS+R NLDP D ++W LE +K
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1341 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
V+++ GL+ V E G +FSVGQRQL CLARA ++ S +L +DE TA++D T +ILQ
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456
+ + TV+TIAHR+ST+L+ D +L+L G LVE P+ LL E VF+S VR
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 2e-60
Identities = 155/585 (26%), Positives = 269/585 (45%), Gaps = 51/585 (8%)
Query: 893 AKFSGWFITLVICLSAILM--QASRNGNDLWLSYWVDTTGSSQ--TKYSTSFYLVVLCI- 947
+ + L+I +A L A R D S SS +Y +V L +
Sbjct: 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFS-----KDSSGLLNRYFAFLLVVALVLA 72
Query: 948 ---FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1004
F L +R AV H +++ FFD+ G +++R ++
Sbjct: 73 LGTAARFYLVTWLGERVV---ADIRRAVFAH------LISLSPSFFDKNRSGEVVSRLTT 123
Query: 1005 DLYMIDDSLPFILNILLAN---FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
D ++ + L++ L N +G L + + S +LL VP + + F
Sbjct: 124 DTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPL--VLLPILLF--- 178
Query: 1062 TSRELRRL-----DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY 1116
R +R+L D ++ + YA ETL T++AF ED ++F V +
Sbjct: 179 -GRRVRKLSRESQDRIADAGSYAG--ETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235
Query: 1117 SELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1176
+ L+ + +L + I + +G+ + S G +G + YA + +
Sbjct: 236 QRIRTRALLTAIVIVL---VFGAIVGVLWVGAHDVIAGKMS-AGTLGQFVFYAVMVAGSI 291
Query: 1177 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KP 1234
G + E ++ + ER++E + + + P +G IEF+ V Y +P
Sbjct: 292 GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARP 351
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
PA L +N T+ G V +VG +GAGKS++ L R G+IL+DG+++
Sbjct: 352 DQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA 410
Query: 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETF 1350
+LR R A+VPQ P LF S+ +N+ + D D ++ + H E + A+ G +T+
Sbjct: 411 ELRARMALVPQDPVLFAASVMENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410
+ E G++ S GQRQ I +ARA+LK + +L LDE T+ +DA++ ++Q A+ + KG T +
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTL 529
Query: 1411 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
IAHR++TVL D I+++D G +V QG L+ + +++ R
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA-KGGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 5e-59
Identities = 140/520 (26%), Positives = 248/520 (47%), Gaps = 45/520 (8%)
Query: 942 LVVLCIFCMFNS--FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
L VL C F S L+ V S + + + K++ PV FFD+ P G +L
Sbjct: 63 LAVLRGICSFVSTYLLSWV--------SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 1000 NRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056
+R + D + + +L+ +GL + + S+ +++++P L
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV------LS 168
Query: 1057 FFYRSTSRELRRLDS---VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
R S+ LRR+ S + ETL G ++ F + Y +F +R
Sbjct: 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 1114 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1173
+ +A S QL+A+ ++ + + + + + T G + A I
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAVV--LFIALFQAQAGSL--TAG------DFTAFIT 278
Query: 1174 SLLGNF--LSSFTET----EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1227
+++ L S T ++ + + E + +D P E+ G +++ +G +EF+N
Sbjct: 279 AMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER---ARGDVEFRN 335
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287
VT RY AL I+ IE G V +VGR+G+GKS+++N + R GQIL+DG +
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 1288 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAV 1345
+ + + LR + A+V Q LF ++ +N+ D +I L + ++ V+ +
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455
Query: 1346 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
GL+T + E+G+ S GQRQ + +ARALLK + +L LDE T+ +D ++ ++Q A+
Sbjct: 456 PLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443
+G T + IAHR+ST+ D I+++D G +VE+G LL
Sbjct: 516 MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 4e-56
Identities = 140/459 (30%), Positives = 220/459 (47%), Gaps = 59/459 (12%)
Query: 1008 MIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL-QFFYRSTSREL 1066
+ID LPF L LL + ++G +V + L+ +P + L Q + E
Sbjct: 267 LID--LPFALLFLLV--IAIIGGPLV------WVPLVAIPLILLPGLLLQRPLSRLAEES 316
Query: 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126
R S R A E+L+G TI+A +E F ++ E V A
Sbjct: 317 MRE-SAQR---NAVLVESLSGLETIKALNAEGRFQRRW-EQTV--------AALARS--G 361
Query: 1127 LRLQLLAAFIISF------IATMAVI--G----SRGNLPATFSTPGLVG---LALSYAAP 1171
L+ + L+ +F + ++A++ G S G L + GL+ L+ AP
Sbjct: 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL----TMGGLIACVMLSGRALAP 417
Query: 1172 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1231
+ L G L+ + + + + SL+ E M +P E G + L QG IEF+NV+
Sbjct: 418 LGQLAG-LLTRYQQAKTALQSLD---ELMQLPVERPEGTRFLHRP-RLQGEIEFRNVSFA 472
Query: 1232 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1291
Y AL +++ TI G +V I+GR G+GKS++L L L G +L+DG++I
Sbjct: 473 YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVE--AVG 1346
DLR VPQ P LF G+LRDN+ P+ DD +I E V E V G
Sbjct: 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPDG 590
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1406
L+ + E G S S GQRQ + LARALL+ +L LDE T+ +D ++ ++ + G
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1407 MTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
T++ + HR S +L++ D I+++D+G +V G +L+
Sbjct: 651 KTLVLVTHRTS-LLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 8e-56
Identities = 135/500 (27%), Positives = 231/500 (46%), Gaps = 42/500 (8%)
Query: 969 RAAVKVHNTL----LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDS----LPFILNIL 1020
RAA KV +L L K+ F Q P G + ++ LP +
Sbjct: 66 RAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125
Query: 1021 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1080
+ + +L ++ LL+ P ++ L + ++ +++R +
Sbjct: 126 IVPLL-ILIAIFFFNWAAALILLITAPLIPLFMIL-VGLAAKDASEKQFSALAR--LSGH 181
Query: 1081 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF- 1139
F + L G T+RAF + + ++ + + T S+ LR+ L++ ++ F
Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRK-----DSEDFRKATMSV---LRIAFLSSAVLEFF 233
Query: 1140 ----IATMAV-IGSR----GNLPATFSTPGLVGLALS--YAAPIVSLLGNFLSSFTETEK 1188
IA +AV IG R G+L T GL L L+ + P+ LG+F F
Sbjct: 234 AYLSIALVAVYIGFRLLGEGDL--TL-FAGLFVLILAPEFFQPL-RDLGSF---FHAAAA 286
Query: 1189 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIE 1248
+ +++ ++ P + I +N++ RY P AL D+N TI+
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIK 345
Query: 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1308
G +VG +GAGKS++LN L G+I V+G+++ + R + + V Q+P+
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 1309 LFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLI 1366
LF G++R+N+ + + I + L++ + E V GL+T + E G S GQ Q +
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465
Query: 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1426
LARALL + +L LDE TA++DA+T I+ A+ K TV+ I HR+ + D I+
Sbjct: 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIV 525
Query: 1427 ILDHGHLVEQGNPQTLLQDE 1446
+LD+G LVEQG + L + +
Sbjct: 526 VLDNGRLVEQGTHEELSEKQ 545
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 2e-55
Identities = 112/459 (24%), Positives = 211/459 (45%), Gaps = 18/459 (3%)
Query: 996 GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW----FI 1051
G +LNR +D+ +D+ ++ + V + + + LS+ + LLL I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
L FYR+ + L R+ + + FT+ + G + + F +ED + + +
Sbjct: 175 IPTL--FYRAGRKFGAHLAQ-GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 1112 QRTSYSELTASLWLSLRLQLLAAFIISF-IATMAVIGSRGNLPATFSTPGLVGLALSYAA 1170
+ + + L L+A ++ + MA G L + L+ + +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALL-VIFAALE 290
Query: 1171 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1230
L +F + + S R+ + +D E + + +E +NV+
Sbjct: 291 AFEPLAP---GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT---GQALELRNVSF 344
Query: 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290
Y AL + N T+ G +V I+GR+G+GKS++L L G I ++G+ I +
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 1291 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEA--VGL 1347
+ LR +V+ Q LF G+LRDNL + + D ++W+ L++ +++ +E+ GL
Sbjct: 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
T++ E G S G+R+ + LARALL + + LDE T +D T + + +G
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGK 524
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
T++ + HR+ + MD I++LD+G ++E+G LL +
Sbjct: 525 TLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 4e-55
Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 3/227 (1%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+EF+NVT RY P L DI+ I G V +VG +G+GKS+++N + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1341
+DG ++ + + LR + +V Q FLF ++ +N+ ++ + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1342 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + G +T + E G+ S GQRQ I +ARALLK +L LDE T+ +D ++ ++Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1400 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
+ K T IAHR+ST+ N D I++L+ G +VE+G + LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-54
Identities = 88/238 (36%), Positives = 132/238 (55%), Gaps = 28/238 (11%)
Query: 1223 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
IEF+NV+ RY PS P L ++ TI G V +VG +G GKS++++ L R G+
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
IL+DG++I + +R LR + +V Q P LF+G++ +N+ + D +E
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDA----------TDEE 108
Query: 1341 EVEAV--------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
EA G +T V E G S GQ+Q I +ARALL++ K+L LDE T+
Sbjct: 109 VEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
+DA++ ++Q A+ KG T I IAHR+ST+ N D I +L +G +VEQG L+
Sbjct: 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-53
Identities = 122/568 (21%), Positives = 229/568 (40%), Gaps = 47/568 (8%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 345
LL +++ + PLL+ ++I L G L L + L L ++L S+ S+
Sbjct: 21 LLLLLSALLSLLLPLLIGRIIDALLADLGEL--LELLLLLLLLALLGGVLRALQSYLGSR 78
Query: 346 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN-LANSFHDAWSLPF 404
L K+ + + +++K L + L+ + G++ + ++ D + N ++ ++
Sbjct: 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSIL 138
Query: 405 Q-IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 463
IG + L + A + L + +L + + +A + ++ + E R E
Sbjct: 139 LLIGSLVLLFSLSWRLALILLLILPLLALVL-SLLARKSRKLSRRVREALGELNARLLES 197
Query: 464 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP----TLFSLFT 519
L+ IR +K +G E + + + + + +
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRR--ANLRASRLEALLAPLMLLLSSLGTVLVLA 255
Query: 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579
G F ++ L + + L++P+ V++ L A + RL L
Sbjct: 256 LGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL------ 309
Query: 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSL 639
+ + + ++ ++ + S+ + VL +S + G
Sbjct: 310 -------DEEPEVEDPPDPLKDTIGSIEFENVSFSY-----PGKKPVLKDISFSIEPGEK 357
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSG 686
VA++G GSGKS+L+ +L T G I G I V Q P + SG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 687 TIRDNILFGKNYDPQSY-SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
TIR+NI G+ E LK I+ + G +GE+GVNLSGGQR RLA+A
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RA+ I +LD+ SA+D + I + + +T ++ H + I AD ++V
Sbjct: 478 RALLRNPPILILDEATSALDTETEALIQDA--LKKLLKGRTTLIIAHRLSTIKNADRIIV 535
Query: 806 MDKGQVKWIGSSADLAV--SLYSGFWST 831
+D G++ G+ +L LY+ +
Sbjct: 536 LDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 4e-53
Identities = 147/531 (27%), Positives = 237/531 (44%), Gaps = 57/531 (10%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 998
+ ++ + IF L +R + FA + R V++ L ++ P+ +F+ G
Sbjct: 182 ALAMLAVAIFEPA---LGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT 238
Query: 999 LNRF-----------SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
+ R S L ++ D L F++ L F + L+ V + L+
Sbjct: 239 VARVRELEQIRNFLTGSALTVVLD-LLFVVVFLAVMFF----YSPTLTGVVIGSLVCYAL 293
Query: 1048 FWFIYSKLQFFYRSTSRELRRL--DSVSRSPIYASF-TETLNGSSTIRAFKSEDYFMAKF 1104
+ LR+ D RS SF E++ G TI+A +E F ++
Sbjct: 294 LSVFVGPI----------LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRW 343
Query: 1105 KEHVVLYQRTSYSELTASLWLSLRLQL---LAAFIISFIATMAVIGSRGNLPATFSTPG- 1160
+ Y S+ ++L L I+ + VIG G L +PG
Sbjct: 344 DRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIG--GAL-----SPGQ 396
Query: 1161 LVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217
LV LA P++ L F +T ++LER+ + ++ P E L+
Sbjct: 397 LVAFNMLAGRVTQPVLRL-AQLWQDFQQT---GIALERLGDILNSPTEP--RSAGLAALP 450
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
+G I F+N+ RY P P L ++N I+ G +GIVG +G+GKS++ L RL
Sbjct: 451 ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ 510
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSV-L 1333
GQ+LVDG+++ LR + VV Q LF S+RDN+ +P + I + L
Sbjct: 511 HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKL 569
Query: 1334 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
H G T V E G + S GQRQ I +ARAL+ + ++L DE T+ +D ++
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
+++ + C+G TVI IAHR+STV D I++L+ G + E G + LL
Sbjct: 630 ALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 3e-52
Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 8/227 (3%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+NVT Y P P L D++FTI G +V IVG +G+GKS+IL LFR + G IL
Sbjct: 1 IEFENVTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVK 1339
+DG +I + LR VVPQ LF ++ N+ P +++ + + +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEE--VIEAAKAAQIH 117
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+++ G +T V E G+ S G++Q + +ARA+LK+ +L LDE T+ +D T +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
A+ KG T I IAHR+ST++N D+I++L G +VE+G + LL
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 4e-51
Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 7/229 (3%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I F++V RYKP P L +I+ I+ G VGIVGR+G+GKS++ + R G++L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1337
VDG ++ LR + VV Q LF S+RDN+ DP + + + L H
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ E E G +T V E G S GQRQ I +ARAL+ + ++L DE T+ +D ++ +
Sbjct: 121 ISELPE--GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
+ C G TVI IAHR+STV N D I++++ G +VEQG+ LL +
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 9e-51
Identities = 155/506 (30%), Positives = 246/506 (48%), Gaps = 63/506 (12%)
Query: 969 RAAVKVHNTLLTKIVNA----PVLFFDQTPGGRILNRFSSDLYMIDD-----------SL 1013
RAAV V L T +++A P+ FD P G++++R ++D +I D S
Sbjct: 91 RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150
Query: 1014 PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVS 1073
I +L+A F L + L + +F +L+V IY Q + R +R
Sbjct: 151 ALIGAMLVAMF--SLDWRMALVAIMIFPAVLVV--MVIY---QRYSTPIVRRVRAY---- 199
Query: 1074 RSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS---LR-- 1128
+ I F E +NG S I+ F+ + A+F E + R+ Y +L L LR
Sbjct: 200 LADINDGFNEVINGMSVIQQFRQQ----ARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255
Query: 1129 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTE--T 1186
L L +A I+ + + G FS G + + + YA +S LG E T
Sbjct: 256 LSLFSALILC--GLLMLFG--------FSASGTIEVGVLYA--FISYLGRLNEPLIELTT 303
Query: 1187 EKEM-----VSLERVLEYMDVPQEELCGYQSLSPDWPFQ-GLIEFQNVTMRYKPSLPAAL 1240
++ M V+ ERV E MD P++ Y + D P Q G I+ NV+ Y+ L
Sbjct: 304 QQSMLQQAVVAGERVFELMDGPRQ---QYGN--DDRPLQSGRIDIDNVSFAYRDDNLV-L 357
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
+IN ++ V +VG TG+GKS++ + L P+ G+I +DG + + LR
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358
A+V Q P + + N+ + ++W LE + E ++ GL T + E G +
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
SVGQ+QL+ LAR L+++ ++L LDE TAN+D+ T +Q A+++ + T++ IAHR+ST
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST 537
Query: 1419 VLNMDEILILDHGHLVEQGNPQTLLQ 1444
++ D IL+L G VEQG Q LL
Sbjct: 538 IVEADTILVLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 5e-49
Identities = 135/489 (27%), Positives = 231/489 (47%), Gaps = 49/489 (10%)
Query: 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVL 1034
L ++ PV FFD+ G +L+R + D + S L ++ A+ +GL +
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLD---SVSRSPIYASFTETLNGSSTI 1091
S+ L+++ P + R S+ R + + + S + L G +
Sbjct: 164 SWQLSLILIVIAPI------VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEV 217
Query: 1092 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-RG 1150
F ++ +F + ++ ++AS +QL+A+ ++F+ A S
Sbjct: 218 LIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 1151 NL-PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209
L T + +AL P+ SL N + F ++ M + + + +D+ QE+ G
Sbjct: 278 TLTAGTITVVFSSMIAL--MRPLKSLT-NVNAQF---QRGMAACQTLFAILDLEQEKDEG 331
Query: 1210 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1269
+ + +G IEF+NVT Y AL +INF I G V +VGR+G+GKS+I N
Sbjct: 332 KRVIER---AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANL 388
Query: 1270 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1329
L R I G+IL+DG ++ + + LR + A+V Q+ LF ++ +N I
Sbjct: 389 LTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN-----------I 437
Query: 1330 WSVLEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLK 1374
+ + +E++E GL+T + E+G+ S GQRQ I +ARALL+
Sbjct: 438 AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497
Query: 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1434
S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+ DEIL+++ G +V
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557
Query: 1435 EQGNPQTLL 1443
E+G LL
Sbjct: 558 ERGTHAELL 566
|
Length = 582 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 4e-47
Identities = 124/435 (28%), Positives = 202/435 (46%), Gaps = 55/435 (12%)
Query: 1019 ILLANFVGLLGIAVVL-----SYVQVFFLLLLVPF--WFIYSKLQFFYRSTSRELRRLDS 1071
++LA V L +A V S + + L+P I Q + ++ +
Sbjct: 125 LVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPIFMILIGWAAQ------AAARKQWAA 178
Query: 1072 VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS--YSELTASLWLSLRL 1129
+SR + F + L G T++ F K +R+S Y E T + LR+
Sbjct: 179 LSR--LSGHFLDRLRGLPTLKLFGRA-------KAQAAAIRRSSEEYRERTMRV---LRI 226
Query: 1130 QLLAAFIISFIATMAV------IGSR---GNLPATFSTPGLVGLALSYAAPIVSL-LGNF 1179
L++ ++ AT++V IG R G+L GL L L AP L L
Sbjct: 227 AFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLA---TGLFVLLL---APEFYLPLRQL 280
Query: 1180 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL--SPDWPFQGLIEFQNVTMRYKPSLP 1237
+ + + + E + +D L G + +P +EF V++ Y P
Sbjct: 281 GAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS----LEFSGVSVAY-PGRR 335
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
AL ++FT+ G +V +VG +GAGKS++LN L G I V+G+ + + R
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETFVKE 1353
+ A VPQ PFLF G++ +N+ D D +I LE+ + E V A+ GL+T + E
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G S GQ Q + LARA L+ + +L LDE TA++DA+T + + A+ + +G TV+ +
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
Query: 1414 HRISTVLNMDEILIL 1428
HR++ D I++L
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 5e-47
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 1/195 (0%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG I++ Q WI+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
GTI++NI+FG +YD Y +KAC L+ DI+ D +GE G+ LSGGQRAR++LA
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILI 230
Query: 806 MDKGQVKWIGSSADL 820
+ +G + G+ ++L
Sbjct: 231 LHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 178 bits (455), Expect = 2e-46
Identities = 137/570 (24%), Positives = 235/570 (41%), Gaps = 59/570 (10%)
Query: 294 IGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352
+ A PL +I K L S VLAI L L ++ ++ ++ ++ L +L
Sbjct: 169 LALATPLFSQIVIDKVLPDASRSTL-TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDL 227
Query: 353 SIMTIIYQKCLYVRLAERSEFSDGEIQT-FMSVDTDR---TVNLANSFHDAWSLPFQIGV 408
+ ++ L + L+ + S GEI + ++ R T ++ D L F +
Sbjct: 228 ELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIID---LLFALIF 284
Query: 409 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 468
+ K + LA L + + L+ T K++++ E+ E + I
Sbjct: 285 LAVMFLYSWKLTLIV-LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIE 343
Query: 469 TLKMYGWE-QIFSSW---LMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
T+K E + S W L K + K L+ + L + FG
Sbjct: 344 TVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL--ILWFGAIL 401
Query: 525 LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584
++ +L + L ISP+ + A +++ RL L
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL----------- 450
Query: 585 AANSPSYISNGLSNFN--SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
++P + + + ++ + + ++ V L +SL +P G VA+
Sbjct: 451 --DTPPEQEGDKTLIHLPKLQGEIEFENVS---FRYGPDDPPV-LEDLSLEIPPGEKVAI 504
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIR 689
+G GSGKS+LL +LG G I G + YV Q P++ SG+IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 690 DNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
+NI G +P+ + E ++A L I + G +GE G NLSGGQR RLALA
Sbjct: 565 ENIALG---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RA+ I +LD+ SA+D + IL N + + +T I+ H + I +AD ++V
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQN--LLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 806 MDKGQVKWIGSSADLAVS--LYSGFWSTNE 833
+D+G++ GS +L LY+ + E
Sbjct: 680 LDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-45
Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 5/244 (2%)
Query: 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+G +EF +V+ Y S + D++F + G V IVG TGAGKS+++N L R+
Sbjct: 331 VKGAVEFDDVSFSYDNSRQG-VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1335
G+IL+DG +I LR AVV Q LF S+ DN+ P +++++ + +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
H E + G +T V E G S G+RQ + +ARALLK +L LDE T+ +D +T +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
++ A+ KG T IAHR+STV N D IL+ D+G +VE G+ L+ F++ +R
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA-RGGRFAALLR 568
Query: 1456 ASTM 1459
A M
Sbjct: 569 AQGM 572
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-45
Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 9/223 (4%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV+ Y AL +++ TI G +V I+GR G+GKS++L L L G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1337
+L+DG +I DLR VPQ LF G+LRDN+ P DD +I E
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1338 VKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V + V GL+ + E G S GQRQ + LARALL +L LDE T+ +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
L+ + T+I I HR S +L++ D I+++D G +V G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-44
Identities = 140/540 (25%), Positives = 236/540 (43%), Gaps = 85/540 (15%)
Query: 950 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1009
+ LT ++ + ++ AV + L I+ PV FF Q G I +R
Sbjct: 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQ------ 258
Query: 1010 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK--------------L 1055
LN +A F+ L V + F LL+ +Y L
Sbjct: 259 -------LNDQVAEFLSGQLATTALDAVMLVFYALLM---LLYDPVLTLIGIAFAAINVL 308
Query: 1056 QFFYRSTSREL--RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
S R RRL + + + L T++A E F +++ YQ
Sbjct: 309 ALQLVSRRRVDANRRLQQDAGKLTGVAIS-GLQSIETLKASGLESDFFSRWAG----YQA 363
Query: 1114 TSYSELTASLWLSLRLQLLAAF--IISFIATMAVIG------SRGNLPATFSTPGLV--- 1162
L A L + Q+L +++ + + ++ G L + LV
Sbjct: 364 KL---LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQL----TIGMLVAFQ 416
Query: 1163 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEELCGYQSLS-PDWPFQ 1220
L S+ P+ +L+G F + E E ++ L+ VL +D EE + S P
Sbjct: 417 SLMSSFLEPVNNLVG-FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1278
G +E +N+T Y P P + + + T++ G +V +VG +G+GKS+I +L + G
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA----KL--VAGLY 529
Query: 1279 ----GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWS 1331
G+IL DG+ P L A+V Q FLFEG++RDNL DP + D
Sbjct: 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDA----D 584
Query: 1332 VLEKCH---VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
++ C + + + + G + + E G + S GQRQ + +ARAL+++ +L LDE T+
Sbjct: 585 LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
+D +T I+ + + +G T I +AHR+ST+ + DEI++L+ G +V++G + L
Sbjct: 645 ALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG 702
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 5e-44
Identities = 77/260 (29%), Positives = 137/260 (52%), Gaps = 13/260 (5%)
Query: 1192 SLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1251
SL LE ++ G + L+ + P IE +++ + P +NFT+ G
Sbjct: 323 SLVTFLETPLAHPQQ--GEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1311
++ +VG +GAGK+S+LNAL P G + ++G+ + R + V Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1312 GSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1366
G+LRDN+ +P +D+ ++ LE V E + + GL+T + + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP-DASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1426
LARALL+ ++L LDE TA++DA + ++ A+++ + T + + H++ + D+I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1427 ILDHGHLVEQGNPQTLLQDE 1446
++ G +V+QG+ L Q
Sbjct: 555 VMQDGQIVQQGDYAELSQAG 574
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-44
Identities = 124/451 (27%), Positives = 218/451 (48%), Gaps = 35/451 (7%)
Query: 1007 YMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF--LLLLVPFWFIYSKLQFFYRSTSR 1064
+++ + LP ++ I L +L + ++L + F I S R
Sbjct: 58 WILFNILPTLVEISLV--AVILWRVYGWWFALTTLVTVILYLLFTVIVS--------DWR 107
Query: 1065 -ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1123
+ RRL + + S A ++L T++ F +E+Y ++ + Y++ + + L
Sbjct: 108 TDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167
Query: 1124 WLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
L+ + + + + TM+ +G G L T G + + + L S
Sbjct: 168 VLNFGQTAIFSTGLRVMMTMSALGVEEGQL-----TVGDLVNVNALLFQLSIPLNFLGFS 222
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD----WPF-QGLIEFQNVTMRYKPSLP 1237
+ E + + +E++ + +DV E S +PD WP G + F NV+ Y P P
Sbjct: 223 YREIRQALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
L+ I+FTI G V IVG +GAGKS+IL LFR + G I +DG +I + + LR
Sbjct: 278 I-LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEA--VGLETFVKE 1353
+VPQ LF ++ N+ + D ++ + E + + +++ G +T V E
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G+ S G++Q + +AR +LK+ +L LDE T+ +D T +Q A+ G T + IA
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIA 455
Query: 1414 HRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
HR+ST+++ DEI++LD+G +VE+G + LL
Sbjct: 456 HRLSTIIDADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-42
Identities = 138/517 (26%), Positives = 242/517 (46%), Gaps = 50/517 (9%)
Query: 950 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1009
+ L+ ++ F R ++ + + + + P+ FF G I++RF+ +I
Sbjct: 207 IIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSII 266
Query: 1010 DDSLPFILNILL-ANFVGLLGIAVVLSYVQVFFLLLL-VPFWFIYSKLQFFYRSTSRELR 1067
D IL++ L + ++G+ +V + +F L LL +P +Y+ + ++ T +L
Sbjct: 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP---VYAVIIILFKRTFNKLN 323
Query: 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSE-------DYFMAKFKEHVVLYQRTSYSELT 1120
+ + + +S E LNG TI++ SE D + YQ+ +
Sbjct: 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1180
+ +L+ +I + V+ RG L +G +++ A LL FL
Sbjct: 384 ----IKAVTKLILNVVILWTGAYLVM--RGKLT--------LGQLITFNA----LLSYFL 425
Query: 1181 SSF-------TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYK 1233
+ + + V+ R+ E V E + + + G I +V+ Y
Sbjct: 426 TPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNL-NGDIVINDVSYSYG 484
Query: 1234 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293
L DI+ TI+ ++ IVG +G+GKS++ L G+IL++G ++ +
Sbjct: 485 YGSNI-LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1294 RDLRGRFAVVPQSPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVE--AVGL 1347
LR +PQ P++F GS+ +NL D+ IW+ E +K+++E +G
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE--IWAACEIAEIKDDIENMPLGY 601
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKG 1406
+T + E G S S GQ+Q I LARALL SKVL LDE T+N+D T I+ N ++ + K
Sbjct: 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK- 660
Query: 1407 MTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443
T+I +AHR+S D+I++LDHG ++EQG+ LL
Sbjct: 661 -TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-42
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 22/203 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--------------- 671
L+ +++ +P G L ++G+VG GKSSLL +ILGEM G +H S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 672 --GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
S+AY Q PW+L+ T+ +NI FG ++ Q Y AC+L DI L+ GD IGE
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ---KT 786
+G+NLSGGQR R+ +ARA+Y ++I LDD SA+D ++ ++ I+ LQ +T
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL--KFLQDDKRT 194
Query: 787 RILCTHNVQAISAADMVVVMDKG 809
+L TH +Q + AD ++ M G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-41
Identities = 80/232 (34%), Positives = 133/232 (57%), Gaps = 4/232 (1%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD 59
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
I +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1341 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T +++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1450
+ TVI HRI +L L+++ + + + Q LL +E S F
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHF 230
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (411), Expect = 2e-41
Identities = 133/494 (26%), Positives = 213/494 (43%), Gaps = 89/494 (18%)
Query: 996 GRILNRFSSDLYMID--DSLPF-ILNILLANFVGLLGIAVVLSYVQV-------FFLLLL 1045
G +LNR +D +D D L +++ L+A V +L + + LS+ + LLLL
Sbjct: 117 GDLLNRLVAD---VDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLL 173
Query: 1046 VPFWFIYSKLQFFYR---STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMA 1102
+ L FYR ++L L + R TE L G + + F +ED +
Sbjct: 174 ---LLLLPLL--FYRLGKKPGQDLTHLRAQYRV----QLTEWLQGQAELTLFGAEDRYRQ 224
Query: 1103 KFK--EHVVLYQRTSYSELTASLWLSLRLQLLA-AFIISFIATMAVIGSRGNLP------ 1153
+ + E L + + LT LS L +LA + + +A G GN
Sbjct: 225 QLEQTEQQWLAAQRRQANLTG---LSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIA 281
Query: 1154 -------ATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1206
A F V A + LG ++S R+ E + Q+
Sbjct: 282 LFVFAALAAFEALMPVAGAFQH-------LGQVIAS----------ARRINEITE--QKP 322
Query: 1207 LCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI 1266
+ + S Q + NV+ Y L ++ I+ G +V ++GRTG GKS++
Sbjct: 323 EVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTL 382
Query: 1267 LNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHM 1323
L L R G+IL++G I + LR +VV Q LF +LRDNL P
Sbjct: 383 LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--N 440
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVK----------ESGISFSVGQRQLICLARALL 1373
D + VL++ VGLE ++ E G S G+++ + +ARALL
Sbjct: 441 ASDEALIEVLQQ---------VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491
Query: 1374 KSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
+ +L LDE T +DA+T IL+ ++ + TV+ I HR++ + D I ++D+G
Sbjct: 492 HDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550
Query: 1433 LVEQGNPQTLLQDE 1446
++EQG Q LL +
Sbjct: 551 IIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-40
Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 10/243 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N+T +Y A L ++F +E G G++G GAGK+++L L L G+I
Sbjct: 4 VIEVRNLTKKYGGDKTA-LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK-IWSVLEKCHVK 1339
LV G +++ P +R R VPQ P L+ ++R+NL+ F L + + ++
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFAR---LYGLSKEEAEERIE 118
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E +E GLE + + S G +Q + +A ALL ++L LDE T+ +D ++ +
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1400 ISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456
+ K G+T++ H + + D ++IL+ G ++ +G P+ L + +
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEP 238
Query: 1457 STM 1459
+
Sbjct: 239 ERL 241
|
Length = 293 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
Query: 1212 SLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1269
SL+PD +G+++FQNVT Y P+ P L D++FT+ G +VG +G+GKS+++
Sbjct: 2 SLAPD-HLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVAL 59
Query: 1270 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DL 1327
L GGQ+L+DG I + L + ++V Q P LF SL+DN+ + +
Sbjct: 60 LENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI-AYGLQSCSFE 118
Query: 1328 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+ +K H + A G +T V E G S GQ+Q + +ARAL+++ +VL LDE T
Sbjct: 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
+ +DA++ +Q A+ + TV+ IAHR+STV D+IL+LD G +
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-38
Identities = 145/528 (27%), Positives = 232/528 (43%), Gaps = 69/528 (13%)
Query: 955 LTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1014
L ++R + SL+AAV + LL PV FF Q G + +R + I L
Sbjct: 198 LAVLRLETRMDASLQAAV--WDRLL----RLPVSFFRQYSTGDLASRAMG-ISQIRRILS 250
Query: 1015 -FILNILLANFVGLLGIAVVLSY------VQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067
L LL+ LL + ++ Y V V L+ + + LQ R L
Sbjct: 251 GSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK---ERRLL 307
Query: 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127
L I + +NG S +R +E+ A++ + + L L
Sbjct: 308 ELSG----KISGLTVQLINGISKLRVAGAENRAFARWAK-----------LFSRQRKLEL 352
Query: 1128 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPI--VSLLGNFLSS--- 1182
Q + + F A + V+ S L A + L G LS + + + G+F +
Sbjct: 353 SAQRIENLLTVFNAVLPVLTS-AALFA-AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQ 410
Query: 1183 FTETEKEMVSL----ERVLEYMDVPQEELCGYQSLSPD-WPFQGLIEFQNVTMRYKPSLP 1237
+ T ++++ ER ++ E D G IE VT RY+P P
Sbjct: 411 LSNTLISILAVIPLWERAKPILEALPE----VDEAKTDPGKLSGAIEVDRVTFRYRPDGP 466
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTP 1292
L D++ IE G V IVG +G+GKS+ L RL TP G + DG ++
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKST----LLRLLLGFETPE-SGSVFYDGQDLAGLD 521
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEA--VGL 1347
V+ +R + VV Q+ L GS+ +N+ P +++ W + E++ A +G+
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE---AWEAARMAGLAEDIRAMPMGM 578
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
T + E G + S GQRQ + +ARAL++ ++L DE T+ +D +T +I+ S E +
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE--SLERLKV 636
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
T I IAHR+ST+ N D I +LD G +V+QG L+ E +F+ R
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE-GLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-38
Identities = 107/454 (23%), Positives = 194/454 (42%), Gaps = 66/454 (14%)
Query: 995 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL------------ 1042
G +L R +D +D + +++ V L+ A ++ + V +
Sbjct: 109 RGDLLGRLGAD---VDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLL 165
Query: 1043 -LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1101
+ P + + R+ + L RL R + A T+ L+G++ + A + +
Sbjct: 166 AGFVAPLVSLRAA-----RAAEQALARL----RGELAAQLTDALDGAAELVASGALPAAL 216
Query: 1102 AKFKEHVVLYQRTSYSELTA-----SLWLSLR--LQLLAAFIISFIATMAVIGSRGNL-- 1152
A+ + ELT + +L L LLAA + + G
Sbjct: 217 AQ-------VEEAD-RELTRAERRAAAATALGAALTLLAAGLA--VLGALWAGGPAVADG 266
Query: 1153 ---PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209
P T + L+ LA A + L T + ER++E +D G
Sbjct: 267 RLAPVTLAVLVLLPLAAFEA---FAALPAAAQQLTRVRA---AAERIVEVLDAAGPVAEG 320
Query: 1210 YQSLSPDWPFQGL-IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1268
+ +E ++++ Y + P L ++ + G +V I+G +G+GKS++L
Sbjct: 321 SAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLA 379
Query: 1269 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-----DPFHM 1323
L L G++ +DG+ + + ++R R +V Q LF+ ++R+NL D
Sbjct: 380 TLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA--- 436
Query: 1324 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
D ++W+ LE+ + + + A+ GL+T + E G S G+RQ + LARALL + +L L
Sbjct: 437 -TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHR 1415
DE T ++DA+TA L + + G TV+ I H
Sbjct: 496 DEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 1223 IEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
I ++ + + L DIN + G V IVG G+GKSS+L+AL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1336
+ V G A V Q P++ G++R+N+ PF D+ + V++ C
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPF---DEERYEKVIKAC 104
Query: 1337 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
++ ++E + G T + E GI+ S GQ+Q I LARA+ + + LD+ + VDA
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1395 -ILQNAISSECKGM-TVITIAHRISTVLNMDEILILDHG 1431
I +N I T I + H++ + + D+I++LD+G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-36
Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 13/316 (4%)
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALG 326
SL+R + A Y K+++D P+LL +KFL + G L + L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 327 LTSILKSFFDTQYSFHLS-KLKLKLRSSIMTIIYQKCLYV--RLAERSEFSDGEIQTFMS 383
LT +++S ++ +++S + L+ RS++ +I++KC + + + + + G I MS
Sbjct: 293 LTQLIQSVCLHRF-YYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMS 351
Query: 384 VDTDRTVNLANSFHD----AWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439
D +R NSF WS P + +++ LL V + + +A+ ++ +P+N I
Sbjct: 352 TDVER----INSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407
Query: 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKY 499
A K+ K D R++ T E + IR K WE F + + R+ E+++L +
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 500 LDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGL 559
F TPTL F ++ L+GH+L +VF +AL L P PWV +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 560 IDAFISIRRLTRFLGC 575
+ +SI+R++ FL C
Sbjct: 528 LQFLVSIKRISTFLEC 543
|
Length = 1560 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 56/204 (27%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
VL VSL + G VA++G GSGKS+LL +L T G I G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+IAYVPQ P++ SGTIR+NI
Sbjct: 71 LESLRKNIAYVPQDPFLFSGTIRENI---------------------------------- 96
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
LSGGQR R+A+ARA+ I +LD+ SA+D + IL + KT
Sbjct: 97 -------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA--LRALAKGKT 147
Query: 787 RILCTHNVQAISAADMVVVMDKGQ 810
I+ H + I AD ++V+D G+
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-35
Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%)
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
Y + AL ++NFT++ G +GI G TG+GKS++L+ + R + G I + +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-- 1345
+ R R AVV Q+PFLF ++ +N+ + +I V V +++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSEC 1404
G +T V E G+ S GQ+Q I +ARALL ++++L LD+ + VD +T IL N +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWG 498
Query: 1405 KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
+G TVI AHR+S + EIL++ HGH+ ++GN L Q
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 3e-35
Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 5/240 (2%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G +EF+++T + + + D++F + G V IVG TGAGK++++N L R+ GQ
Sbjct: 333 GAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVK 1339
IL+DG++I LR A V Q LF S+R+N+ D +++ +
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ + G +T V E G S G+RQ + +ARA+LK++ +L LDE T+ +D +T + ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457
NAI + K T IAHR+STV N D +L LD G L+E+G+ Q L+Q + F +R S
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLLRRS 570
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-35
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 40/210 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NV+ RY + P L +++F+IE G + I+G +G+GKS++ + L G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG +I +L +PQ LF GS+ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
S GQRQ + LARAL + ++L LDE +++D + L AI++
Sbjct: 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1403 -ECKGMTVITIAHRISTVLNMDEILILDHG 1431
+ G T I IAHR T+ + D IL+L+ G
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 31/239 (12%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPIC-- 1277
IE +++ + Y AL DI+ I G ++G +G GKS++L L RL P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1278 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G++L+DG +I ++ V +LR R +V Q P F GS+ DN+ L++ + K
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAY-----GLRLHGIKLK 113
Query: 1336 CHVKEEVEA----VGLETFVKE--SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ E VE L VK+ + S GQ+Q +CLARAL +VL LDE T+ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1390 AQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTL 1442
+ + ++ I+ K T++ + H R++ D L +G LVE G + +
Sbjct: 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-34
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 31/243 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ L+ ++L + G L A++G G+GKS+LLN +LG + T G I +G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGD 723
I++V Q P++ +GTIR+NIL + P + E + A + V G D
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLAR---PDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
IGE G LSGGQ RLALARA+ + + +LD+ + +DA+ + IL +
Sbjct: 448 TV-IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA--LQELAK 504
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ 843
QKT ++ TH ++ + AD +VV+D G++ G+ +L +L Q++
Sbjct: 505 QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL--------SEKQGLYANLLKQQE 556
Query: 844 EMR 846
R
Sbjct: 557 GRR 559
|
Length = 559 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 9e-34
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ NV+ Y L +++ ++ G ++ ++GR+G+GKS++L L G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG+ + + + L +V+ Q P+LF+ +LR+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
G FS G+RQ + LAR LL+ + ++ LDE T +D T L + I
Sbjct: 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 1403 ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1437
K T+I I H ++ + +MD+IL L++G ++ QG
Sbjct: 144 VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E +N++ Y L D++F+I G GI+G G+GKS++L L L G++
Sbjct: 2 MLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRD--------NLDPFHMNDDLKIWSV 1332
L+DG +I + ++L + A VPQSP G ++ + +L F S
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF------GRPSK 113
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
++ V+E +E +GLE S G+RQ + +ARAL + + +L LDE T+++D
Sbjct: 114 EDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1393 ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
+ + + G+TV+ + H ++ D +++L G +V QG P+ +L +E
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230
|
Length = 258 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 8e-33
Identities = 112/514 (21%), Positives = 200/514 (38%), Gaps = 80/514 (15%)
Query: 343 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
LS L+++L ++K + A + G++ + D D L N +
Sbjct: 90 LSALRVRL--------FEKLEPLSPALLLRYRSGDLLNRLVADVD---ALDNLYLRV-IA 137
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITI--------LLIPVNKWIANLIANATEKMMKQKD 454
P + + L + T F LA+ + L+IP + + Q
Sbjct: 138 PAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIP---TLFYRAGRKFGAHLAQGR 194
Query: 455 ERIR-RTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 513
+R + + + L ++G E + + L T +S +K +
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL----L 250
Query: 514 LFSLFT-FGLFALMGHQLD---------AAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
L + GL M Q+ A + A + + +I
Sbjct: 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA-- 308
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 623
S RRL L + E + A+ +++ + ++ +Q
Sbjct: 309 -SARRLNDIL-----DQKPEVTFPDE--------QTATTGQALELRNVSFTY----PGQQ 350
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L +L L +G VA++G GSGKS+LL + G GSI +G
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 673 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGDMAY 726
+I+ + Q + SGT+RDN+ P + E L A V + ++ G +
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQVGLEKLLESAPDGLNTW 467
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE G LSGG+R RLALARA+ H + +++LD+ +D R +L A++ H KT
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL--ALLFEHAEGKT 525
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ TH ++ + D ++V+D G++ G+ A+L
Sbjct: 526 LLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559
|
Length = 573 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 10/215 (4%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +N++ Y AL DI+ TI+ G V IVG G+GKS++L L L G++LV
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVK 1339
DG ++ +++LR + +V Q+P F ++ + + ++ + + E+ V+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE--IEER--VE 116
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E +E VGLE S + S GQ+Q + +A L +L LDE TA +D L
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 1400 ISS-ECKGMTVITIAHRISTVLN-MDEILILDHGH 1432
+ + +G T+I + H + +L D +++L+ G
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-32
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 56/211 (26%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +N++ RY AL +++ T++ G V +VG G+GKS++L A+ L G+IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
DG +I P+ +LR R VPQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ-------------------------------------- 80
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
S GQRQ + LARALL + +L LDE T+ +D + L +
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 1404 C-KGMTVITIAHRISTVLN-MDEILILDHGH 1432
+G TVI + H D +++L G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 15/234 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N++ RY AAL D++ IE G +V ++G G+GKS++L L L G++
Sbjct: 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1282 LVDGLNI-INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD---PFHMNDDLKIWSVLEK 1335
LVDGL+ + +LR + +V Q+P LF ++ D + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER--- 118
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E +E VGLE + + S GQ+Q + +A L ++L LDE TA +D +
Sbjct: 119 --VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 1396 LQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446
L + E G T+I + H + VL D +++LD G ++ G+P + D
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ VL +SL +P G VA++G GSGKS+L+N I + G I G
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT 70
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q ++ + T+ +NI +G+ + E +A I + G
Sbjct: 71 LASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ- 784
IGE+GV LSGGQR R+A+ARA+ I +LD+ SA+D + R + A+ +++
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV-QAAL--ERLMKN 187
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T + H + I AD +VV++ G++ G+ +L
Sbjct: 188 RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 47/275 (17%), Positives = 103/275 (37%), Gaps = 12/275 (4%)
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFYL-VVLCIFCMFNSFL 955
+ L++ + L+ L L ++D + + S+ L ++L + L
Sbjct: 4 AILLLILAGATALVFP------LLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLL 57
Query: 956 TLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPF 1015
+ R ++ LL +I+ P+ FFD G + +R ++D+ I D L
Sbjct: 58 LQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGD 117
Query: 1016 ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRS 1075
L + + ++G +V+ Y L+L+ + L R+L R + + +
Sbjct: 118 KLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYA 177
Query: 1076 PIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1135
+ E+L+G T++AF E+Y + ++ + + ++ + + QL++
Sbjct: 178 KAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 1136 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1170
+ + G V LS
Sbjct: 238 SYALALWFGAYLVISG----GLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+E+ VL ++ + G VA++G G+GK++L+N ++ G I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAY 726
I V Q ++ SGTI +NI G+ E K I + G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE G NLS G+R LA+ARA+ I +LD+ S +D + + I + M +T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI--QEALEKLMKGRT 190
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGS 816
I+ H + I AD ++V+D G++ G+
Sbjct: 191 SIIIAHRLSTIKNADKILVLDDGKIIEEGT 220
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSI------HASG 672
+L +SL +P G VA++G G GKS++++ + GE++L I
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYIG 728
I V Q P + GTI +NI +GK E +A D +SL G D +G
Sbjct: 78 QIGLVSQEPVLFDGTIAENIRYGKPDATDE--EVEEAAKKANIHDFIMSLPDGYD-TLVG 134
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQK 785
E+G LSGGQ+ R+A+ARA+ I +LD+ SA+DA+ + + L A+ G +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG-----R 189
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T I+ H + I AD++ V+ GQV G+ +L
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L VS +P G VA++G G+GKS+LLN +LG + T GSI +G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 673 --SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
IA+VPQ P++ +GTI +NI + E L+ LD ++ + G IGE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
G LSGGQ RLALARA + + +LD+ + +DA+ +L + +T +L
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL--EALRALAQGRTVLL 512
Query: 790 CTHNVQAISAADMVVVM 806
TH + + AD +VV+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 43/254 (16%)
Query: 1222 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1275
L+E +N+T+ + A+ D++F +E G +GIVG +G+GKS++ AL L P
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1276 ICGGQILVDGLNIIN---TPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331
I G++++DG +++ +R LRG R A++ Q P SL N + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM---TSL---------NPVMTIGD 112
Query: 1332 VLEKCH------VKEEVEAVGLETFVKESGIS-----------FSVGQRQLICLARALLK 1374
+ + + E +E ++ G+ S G RQ + +A AL
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELL-EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHG 1431
K+L DE T +D T + + + + + GM V+ I H + V + D ++++ G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 1432 HLVEQGNPQTLLQD 1445
+VE G + +L +
Sbjct: 232 EIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-30
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ RY AL DI+ T+E G G++G GAGK++++ + L G+I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
V G +I P +++ R +P+ P L+E ++R+NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
S G +Q + LA+ALL ++L LDE T+ +D ++ +
Sbjct: 96 ----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 1402 SECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1433
K G T++ +H + + D + IL++G +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 1e-29
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L+E +N+++ + AL D++F+I+ G +G+VG +G+GKS++ A+ L G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1280 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWS 1331
I+ DG +++ + R +V Q P +L+P + + L+I
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPRMTIGEQIAEPLRIHG 113
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGIS------FSVGQRQLICLARALLKSSKVLCLDECT 1385
L K ++E + L + S GQRQ + +ARAL + K+L DE T
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 1386 ANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ +D AQ +L+ + E G+T++ I H + V + D + ++ G +VE+G
Sbjct: 174 SALDVSVQAQILDLLKK-LQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 26/227 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + ++ Y AL D++ T+E G + ++G +G GK+++L + L G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLEKC 1336
+DG ++ P R +V Q LF P H+ ++ LK+ V +
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF---------P-HLTVAENIAFGLKLRGVPKAE 106
Query: 1337 H---VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
V+E +E VGLE + S GQ+Q + LARAL + +L LDE + +DA+
Sbjct: 107 IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 1394 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
L+ + + G+T I + H L + D I +++ G +V+ G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 1224 EFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
E +++T+ Y P L D++F ++ G + IVG GAGKS++L A+ L G I
Sbjct: 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQS---PFLFEGSLRD----NLDPFHMNDDLKIWSVLE 1334
V G P+ R R VPQ F S+RD L H + S +
Sbjct: 57 RVFGK-----PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKG-LFRRLSKAD 109
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
K V E +E VGL S GQ+Q + LARAL++ +L LDE A VD +T
Sbjct: 110 KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169
Query: 1395 ILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437
+ + +GMT++ + H + VL D +L+L+ +V G
Sbjct: 170 DIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 15/233 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N+T+ Y L DI+ ++E G ++G GAGKS++L A+ L G+I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSP---FLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1335
+ G + R R R VPQ F +++D + + + +K
Sbjct: 62 KIFGKPV---RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-FRRLNKKDK 117
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E +E VG+E S GQ+Q + LARAL ++ +L LDE VD
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177
Query: 1396 LQNAISSE-CKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1446
+ + + +G TV+ + H + V+ D ++ L + HL+ G P+ +L +E
Sbjct: 178 IYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTEE 229
|
Length = 254 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
VL +S + G V ++G GSGKSSLL ++ + L+ GSI G
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL 73
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 721
I+ +PQ P + SGTIR N+ DP YS+ L+ L + + G
Sbjct: 74 HDLRSRISIIPQDPVLFSGTIRSNL------DPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
G + E G NLS GQR L LARA+ S I +LD+ ++VD + ++ I
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIRE-A 185
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816
T + H + I +D ++V+DKG+V S
Sbjct: 186 FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 55/205 (26%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
+ VL VS + G +A+IG GSGKS+L ILG + T G + G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 674 -------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ Y+PQ + SG+I +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
SGGQR RL LARA+Y I +LD+ S +D + R + AI T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGAT 148
Query: 787 RILCTHNVQAISAADMVVVMDKGQV 811
RI+ H + +++AD ++V++ G+V
Sbjct: 149 RIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-28
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ L +S L G +A+IG GSGKS+L I+G T GS+ G
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 673 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 725
I Y+PQ + GT+ +NI FG+N DP+ E K + ++ + L G D
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYD-T 446
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 783
IG G LSGGQR R+ALARA+Y + +LD+ S +D + A L+NAI
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA---LANAIKALKAR 503
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
T ++ TH + D ++V+ G++ G
Sbjct: 504 GITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ L+ VSL + G VA+IG VGSGKS+LL + G T GS+ G
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP 73
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY- 726
+I YVPQ + GT+RDNI G L+A L +
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLD 131
Query: 727 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN--AIMGPHM 782
IGE+G LSGGQR +ALARA+ + I +LD+ SA+D + ++G
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQV 811
KT I+ TH + D ++VMD G++
Sbjct: 190 --KTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 42/215 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NV+ RY L+D++ IE G V ++G +G+GKS++L + L G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1283 VDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+DG L + + LR R +V Q LF H+ +VLE
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALF----------PHL-------TVLENI---- 97
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
A+GL SG GQ+Q + LARAL VL LDE T+ +D T ++ +
Sbjct: 98 ---ALGL------SG-----GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 1401 SSECK--GMTVITIAHRISTVLNM-DEILILDHGH 1432
S G+TV+ + H + + D +++L G
Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 110 bits (279), Expect = 9e-28
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 42/218 (19%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +N+++ Y L D++ +IE G VGI+G GAGKS++L L L G+IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
DG ++ + ++L + A VPQ+ +E
Sbjct: 59 DGKDLASLSPKELARKIAYVPQA-----------------------------------LE 83
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISS 1402
+GL S G+RQ + LARAL + +L LDE T+++D A +L+ +
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRR 142
Query: 1403 ECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ G TV+ + H ++ D +++L G +V QG
Sbjct: 143 LARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-27
Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 1222 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+IE +NV+ + AL D++ I G GI+G +GAGKS++L + L
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 1279 GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1333
G + VDG ++ +R LR + ++ Q L ++ +N+ P L++ V
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP------LELAGVP 114
Query: 1334 -EKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ V E +E VGL S GQ+Q + +ARAL + K+L DE T+ +D
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1391 QTA-SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NP 1439
+T SIL+ I+ E G+T++ I H + V + D + +LD G LVE+G NP
Sbjct: 175 ETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233
Query: 1440 QT 1441
+
Sbjct: 234 KH 235
|
Length = 339 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +N+ Y S L ++ T+ G V ++GR GAGK+++L + L P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1283 VDGLNIINTPVRDL--RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
DG +I P + G VP+ +F ++ +NL L + K
Sbjct: 59 FDGRDITGLPPHERARAG-IGYVPEGRRIFPELTVEENL--------LLGAYARRRAKRK 109
Query: 1340 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA-- 1386
+E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 110 ARLERV-YELFPRLKERRKQLAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 1387 --NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+ + ++ + E G+T++ + L + D +L+ G +V +G LL
Sbjct: 164 APKIVEEIFEAIR-ELRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
Query: 1444 QD 1445
D
Sbjct: 221 AD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-26
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ L+ VSL + G VA+IG +GSGKS+LL +LG T GS+ G
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 723
+I YVPQ P + GT+RDNI G Y E L+A L + G D
Sbjct: 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
M IGE+G +LSGGQR +ALARA+ I +LD+ SA+D + L
Sbjct: 593 MQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK-------DRL 644
Query: 784 Q-----KTRILCTHNVQAISAADMVVVMDKGQV 811
+ KT +L TH + D ++VMD G++
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ VL +SL + G VA++G G GKS+LL + G I +G
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM--- 724
+I+ V Q + S T+RDN+L P + E L V + ++ D
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAA---PNASDEALIEVLQQVGLEKLLEDDKGLN 466
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
A++GE G LSGG++ RL +ARA+ H + + +LD+ +DA+ R IL ++ H
Sbjct: 467 AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL--ELLAEHAQN 524
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
KT ++ TH + + D + VMD GQ+ G+ +L
Sbjct: 525 KTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560
|
Length = 574 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ +L +S L G + +IG GSGKS+L ++G T GS+ G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 673 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 725
I Y+PQ + GTI +NI FG+ DP+ E + + ++ + L G D
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYD-T 464
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 783
IGE G LSGGQR R+ALARA+Y + +LD+ S +D++ A L+ AI+
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA---LAAAILAAKAR 521
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 819
T ++ H A+++ D ++V+ G++ G +
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L+ +N+++ Y AL++++ IE G +GIVG +G+GKS++ L L G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1280 QILVDGLNIIN-TPVRDLRGRFAVVPQSPFL-------FEGSLRDNLDPFHMND-DLKIW 1330
IL+DG + + +V Q P+ L + L P ++ +I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+L++ + L+ E S GQRQ I +ARAL+ K+L LDE T+ +D
Sbjct: 123 ELLDQVGLPPSF----LDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1391 QT-ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
A IL N + K G+T + I+H ++ V +M D I ++D+G +VE G
Sbjct: 175 SVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224
|
Length = 252 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 1223 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
+E +NV+ Y A AL DI+ ++E G V +VG +G GKS++L + L G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDN--LDPFHMNDDLKIWSVLE-KC 1336
+LVDG PV V Q L ++ DN L +L+ E +
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-----ELQGVPKAEARE 110
Query: 1337 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+E +E VGL F SG G RQ + LARAL VL LDE + +DA
Sbjct: 111 RAEELLELVGLSGFENAYPHQLSG-----GMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1392 TASILQN---AISSECKGMTVITIAHRISTVLNM-DEILIL 1428
T LQ I E G TV+ + H I + + D +++L
Sbjct: 166 TREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-26
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
QG + + +T L I+F ++ G +GI+G +G+GKS++ L + P G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1280 QILVDGLNIINTPVRDLRGRFA-VVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCH 1337
+ +DG ++ L GR +PQ LF+G++ +N+ F D K+
Sbjct: 392 SVRLDGADLRQWDREQL-GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1338 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E + + G +T + E G + S GQRQ I LARAL ++ LDE +N+D++ +
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1396 LQNAI-SSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
L AI +++ +G TV+ IAHR S + ++D+IL+L G +
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-25
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 48/331 (14%)
Query: 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN---GLIDAFISIRRLTR-FLGC 575
G + +M +L + T AL + ++PL + +IN L A ++ RL +L
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLEN---IINLQPKLQAARVANNRLNEVYLVD 455
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW-YCNNEEEQNVVLNQVSLCL 634
SE+ ++ ++ + ++N + + D + S+ Y +N +L+ +SL +
Sbjct: 456 SEFINKKKR-----TELNNLNGDIV-------INDVSYSYGYGSN------ILSDISLTI 497
Query: 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVP 681
S ++G GSGKS+L ++G G I +G I Y+PQ P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQ 738
+I SG+I +N+L G + S E AC + DI M G + E+G ++SGGQ
Sbjct: 558 YIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
+ R+ALARA+ S + +LD+ S +D + I++N + ++ KT I H +
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL---NLQDKTIIFVAHRLSVAK 673
Query: 799 AADMVVVMDKGQVKWIGSSADLAVSLYSGFW 829
+D ++V+D G++ GS +L +GF+
Sbjct: 674 QSDKIIVLDHGKIIEQGSHDELL--DRNGFY 702
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 31/247 (12%)
Query: 1222 LIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272
L+ +N++ RY A+ D++F + G +G+VG +G+GKS++ L
Sbjct: 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 1273 LTPICGGQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHM 1323
L P G I+ DG ++ T +R LR R +V Q P+ SL D L +P +
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY---SSLNPRMTVGDILAEPLRI 396
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
+ + V E +E VGL F+ S GQRQ + +ARAL K+L LD
Sbjct: 397 HGGGS--GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 1383 ECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
E + +D AQ ++L++ G+T + I+H ++ V + D + ++ G +VE+G
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
Query: 1438 NPQTLLQ 1444
+ + +
Sbjct: 513 PTEKVFE 519
|
Length = 539 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-25
Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 29/252 (11%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IEF+NV+ RY A+ D+N TIE G + ++G +G+GK++ L + RL G+I
Sbjct: 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DDLKIWSVL 1333
L+DG +I + +LR + V Q LF P H+ L W
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLF---------P-HLTVAENIATVPKLLGWDK- 107
Query: 1334 EKCH--VKEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
E+ E ++ VGL+ + S GQ+Q + +ARAL +L +DE +D
Sbjct: 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1390 AQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
T LQ I K G T++ + H I L + D I ++D G +V+ P +L +
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
Query: 1447 CSVF-SSFVRAS 1457
+ F F S
Sbjct: 228 ANDFVEDFFGES 239
|
Length = 309 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 25/232 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T YK A+ D++ + G G++G GAGK++ L L G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
++G + I T + R PQ LF+ ++R++L + + + + +KEE
Sbjct: 61 INGYS-IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR-----LKGLPKS-EIKEE 113
Query: 1342 VEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
VE +GL + + S G ++ + LA AL+ VL LDE T+ +D + +
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDE-------ILILDHGHLVEQGNPQTL 1442
+ I KG ++I H +MDE I I+ G L G+PQ L
Sbjct: 174 DLILEVRKGRSIILTTH------SMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+ V+ Y L DI+ EGG IVG +GAGKS+++ + RL G IL
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG++I V DLR + +V Q P LFEG+++DN++ M K V+ +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYL 115
Query: 1343 EAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
VGL + + S G+ Q + +AR L + +VL LDE T+ +D + I++ I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 1402 --SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQ 1440
+TVI I H + + D L+ G LVE NPQ
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224
|
Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 12/230 (5%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE + +T + L ++ + G + I+G +G+GKS++L + L G++L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1283 VDGLNI---INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCH 1337
+DG +I + LR R ++ QS LF+ ++ +N+ P + L + E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-- 116
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V E++EAVGL S G ++ + LARAL ++L DE TA +D + ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1398 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
+ I S + G+T I + H + T + D I +L G +V +G P+ L
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + V+ + + L DIN ++E G V I+G +G GKS++L + L G++
Sbjct: 3 LLEIEGVSKSF-GGVEV-LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKC 1336
L+DG PV V Q L ++ DN L+ +
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE------ 109
Query: 1337 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
KE +E VGL F + SG G RQ + +ARAL K+L LDE +DA
Sbjct: 110 RAKELLELVGLAGFEDKYPHQLSG-----GMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1392 TASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILD 1429
T LQ+ + + TV+ + H + + + D +++L
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 11/242 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NV + L D+N IE G V ++G +G GKS++L + L G+IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+DG ++ + P RG A+V Q+ L+ ++ +N+ F + + ++K VKE
Sbjct: 62 IDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDK-RVKEV 117
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL--QNA 1399
+ +GLE + + S GQRQ + LARAL++ KV LDE +N+DA+ ++ +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 1400 ISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVRAS 1457
E G T I + H + + D I++++ G + + G P L + ++F + F+ +
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237
Query: 1458 TM 1459
M
Sbjct: 238 PM 239
|
Length = 338 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VS +P G VA++G GSGKS++L + ++ GSI G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 673 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+I VPQ + + TI NI +G+ + + E KA + I G +GE+G
Sbjct: 76 AIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG 135
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+ LSGG++ R+A+ARA+ I +LD+ SA+D R I + + +T I+
Sbjct: 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA--LRDVSKGRTTIVIA 193
Query: 792 HNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFWS 830
H + I AD ++V+ G++ G+ +L LY+ W
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 59/246 (23%), Positives = 117/246 (47%), Gaps = 36/246 (14%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPI 1276
+I+ +NV+ Y S AL +++F I G V I+G G+GKS+ IL L +
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-- 62
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--------------FLFEGSLRDNLDPFH 1322
G+I +DG+ I ++++R + ++ Q+P F E + P
Sbjct: 63 -SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKK 118
Query: 1323 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
M D I + +K VG+E ++ + + S GQ+Q + +A L + +++ D
Sbjct: 119 MKD--IIDDLAKK---------VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 1383 ECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1440
E T+ +D + ++ + + + T+I+I H + + D++++ G L+ QG P+
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227
Query: 1441 TLLQDE 1446
+L ++
Sbjct: 228 EILNNK 233
|
Length = 271 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 18/238 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ Y P AL D+N I G V I+G +GAGKS++L +L L G+IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1283 VDGLNIINTP---VRDLRGRFAVVPQSP------FLFEGSLRDNLDPFHMN---DDLKIW 1330
+G+ I +R LR ++ Q + E L L + + ++
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG--YTSTWRSLFGLF 120
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
S +K + +E VG+ + + S GQ+Q + +ARAL++ K++ DE A++D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1391 QTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
++A + + + + G+TVI H++ D I+ L G +V G L +
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 39/239 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N++ + L I+ ++E G V I+G +G+GKS++L L L G I
Sbjct: 2 MIEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1282 LVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC---- 1336
VDG ++ + + LR + +V Q LF H+ +VLE
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFP----------HL-------TVLENVTLAP 102
Query: 1337 -HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
V K E VGL S GQ+Q + +ARAL KV+ DE
Sbjct: 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 1384 CTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
T+ +D + + + + + GMT+I + H + + D ++ +D G ++E+G P+
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221
|
Length = 240 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I F+NV+ Y P AL D++F I G V + G +GAGKS++L ++ G+I
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1282 LVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1334
LV+G ++ R+ LR + VV Q F + D +V E
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQD--------------FRLLPDR---TVYENVAL 102
Query: 1335 --------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
++ V VGL+ + S G++Q + +ARA++ VL D
Sbjct: 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1383 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDE-ILILDHGHLV 1434
E T N+D + I++ G TV+ H + V M +L L+ G LV
Sbjct: 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V+L+ +SL + G +V ++G GSGKS+L I + +G + G
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTL---DVDISLMVGGDMAYI 727
+ V Q + + +IRDNI DP S ++A L IS + G +
Sbjct: 76 RQVGVVLQENVLFNRSIRDNIALA---DPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
GE+G LSGGQR R+A+ARA+ H I + D+ SA+D + I+ N M +T
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--MHDICAGRTV 190
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I+ H + + AD ++VM+KG++ GS +L
Sbjct: 191 IIIAHRLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1276
+IE +NV+ + + AL D++ ++ G GI+GR+GAGKS+++ N L R T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-- 58
Query: 1277 CGGQILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWS 1331
G +LVDG ++ +R R R ++ Q L ++ +N+ P L+I
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP------LEIAG 111
Query: 1332 VLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
V K ++E V VGLE S GQ+Q + +ARAL + KVL DE T+
Sbjct: 112 V-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1388 VDAQ-TASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG------- 1437
+D + T SIL + G+T++ I H + V + D + +++ G +VE+G
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
Query: 1438 NPQ 1440
NPQ
Sbjct: 231 NPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 70/472 (14%)
Query: 358 IYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQV 417
+Y++ LA R G++ + D D +L +P + + +
Sbjct: 92 VYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVR----VIVPAGVALVVGAAAVAA 147
Query: 418 KFAF--------VSGLAITILLIPVNKWIANLIANATEKMMKQ-KDERIRRTGEILTHIR 468
+GL + + P ++ A A E+ + + + E + + L
Sbjct: 148 IAVLSVPAALILAAGLLLAGFVAP---LVSLRAARAAEQALARLRGELAAQLTDALDGAA 204
Query: 469 TLKMYG--------WEQIFSSWL-MKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 519
L G E+ + R++ L + A +
Sbjct: 205 ELVASGALPAALAQVEEADRELTRAERRAAAATALGA-------ALTLLAAGLAVLGALW 257
Query: 520 FGLFALMGHQLD----AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
G A+ +L A +V LA F + P L + R+ L
Sbjct: 258 AGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDA 313
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635
+ E A + ++D + + VL+ VSL LP
Sbjct: 314 AGPVAEGSAPAAGAV---------GLGKPTLELRDLSAGY-----PGAPPVLDGVSLDLP 359
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQVPW 682
G VA++G GSGKS+LL ++ G + G + G ++ Q
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAH 419
Query: 683 ILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
+ T+R+N+ + + + L+ L + + G +GE G LSGG+R R
Sbjct: 420 LFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQR 479
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LALARA+ + I +LD+ +DA+ A +L + + + +T +L TH+
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-24
Identities = 123/523 (23%), Positives = 204/523 (39%), Gaps = 60/523 (11%)
Query: 937 STSFYLVVLCIF-CMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPG 995
T L VL + +F L +R+F + ++ + +A + G
Sbjct: 43 PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRRGSGD-G 101
Query: 996 GRILNRF--------SSDLYMIDDS--LPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045
+ L L+ D+ +P L + +GI + V + L LL
Sbjct: 102 LQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFL-LHPWIGILALGGAVVLVGLALL 160
Query: 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105
L+ ++ R DS R+ + I A M
Sbjct: 161 NN-RATKKPLKEATEASIRANNLADSALRN------------AEVIEA-------MGMMG 200
Query: 1106 EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF--IATMAVIGSRGNLPATFS-TPG-- 1160
+ R L+A S R +L+ F + V+G L TPG
Sbjct: 201 NLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMM 260
Query: 1161 -----LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL-S 1214
LVG AL API +G + F+ + L +L + L
Sbjct: 261 IAGSILVGRAL---APIDGAIGGW-KQFSGARQAYKRLNELLANYPSRDPAM----PLPE 312
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
P +G + +NVT+ L I+F+++ G + I+G +G+GKS++ + +
Sbjct: 313 P----EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVL 1333
P G + +DG ++ +PQ LF G++ +N+ F N D KI
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAA 428
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+ V E + + G +T + G + S GQRQ I LARAL K++ LDE +N+D +
Sbjct: 429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 1392 TASILQNAISS-ECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
L NAI + + +G+TV+ I HR S + +D+IL+L G +
Sbjct: 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ +SL + G +A++G G GK++LL I G G I G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 673 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
+I V Q P + T+ +NI FG + ++ V + ++
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN---R 126
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQ 784
Y E LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R L + L
Sbjct: 127 YPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-REELREELKELQRELG 181
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIG 815
T I TH+ + A++ AD + VM++G++ +G
Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 35/229 (15%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1280
+IEF NV+ Y AALHD++ I G + + G +GAGK+++L L+ LTP GQ
Sbjct: 1 MIEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQ 58
Query: 1281 ILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS------ 1331
+ + G ++ R LR R VV Q F + D ++
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQD--------------FRLLPDRTVYENVALPL 104
Query: 1332 -VLEKC------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
V K V + VGLE S G++Q + +ARA++ S +L DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 1385 TANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHG 1431
T N+D + IL +G TVI H +S V + ++ILD G
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+ + L V+ L G ++ + G GSGKS+LL+ I ++ G I
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384
Query: 669 -HASGSIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+A V Q P++ S T+ +NI G+ + Q + ++ DI + G
Sbjct: 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTE 444
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE+GV LSGGQ+ R+++ARA+ ++I +LDD LSAVD + IL N +T
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRT 502
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
I+ H + A++ A ++VM G + G+ LA
Sbjct: 503 VIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ Y P+ AL D++ +I G V ++G +GAGKS++L L L G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1283 VDGLNIINTP---VRDLRGRFAVVPQSPFLFE----------GSL--RDNLDPFHMNDDL 1327
+DG +I +R LR + ++ Q L E G L R
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL-----F 114
Query: 1328 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
++ EK +E VGL + S GQ+Q + +ARAL++ K++ DE A+
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 1388 VDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1444
+D ++ + + + +G+TVI H++ D I+ L G +V G P L
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234
Query: 1445 D 1445
+
Sbjct: 235 E 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I+ +N+T Y P AL ++N IE G VG++G TG+GKS++ LN L + T
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-- 60
Query: 1277 CGGQILVDGLNIINTPV--RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSV 1332
G+I++DG++I + V D+R + +V Q P LFE ++ ++ +N L +
Sbjct: 61 -SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEI 119
Query: 1333 LEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ VK + VGL E + +S S GQ++ + +A + K+L LDE TA +D
Sbjct: 120 ENR--VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1391 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1439
+ + N I + MT+I ++H + V + D I++++ G QG P
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 1222 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+IE +NV+ Y AL D+N IE G V IVG +G+GKS++LN L L G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1280 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1333
++L++G ++ ++L R + V Q+ L ++ +N++ P +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA----- 115
Query: 1334 EKCHVKEE--VEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ E +E +GLE + + S S GQ+Q + +ARAL+ + K++ DE T N+D+
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 1391 QTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436
+TA + + K G T+I + H D ++ L G + E+
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-23
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAY 676
++ LP G +A++G G+GK+SLLN++LG + GS+ +G +++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 677 VPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
V Q P + GT+RDN+L G + + + L+ + + L+ G IG++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
GQ RLALARA+ + +LD+ +++DA + ++ A+ ++T ++ TH ++
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALN-AASRRQTTLMVTHQLE 545
Query: 796 AISAADMVVVMDKGQVKWIGSSADLA 821
++ D + VM GQ+ G A+L+
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELS 571
|
Length = 588 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 27/244 (11%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ +E +NV+ + A+ DI+ I+ G V ++G +G GK+++L + G
Sbjct: 3 KPALEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1333
+IL+DG +I + P + +V QS LF P HM ++ LK+ L
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALF---------P-HMTVEENVAFGLKVRKKL 108
Query: 1334 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+K +K VE VGLE F S GQ+Q + LARAL+ KVL LDE + +D
Sbjct: 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 1390 AQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
A+ ++ + G+T + + H L M D I +++ G + + G P+ + +
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
Query: 1447 CSVF 1450
+ F
Sbjct: 229 ATRF 232
|
Length = 352 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 4e-23
Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E ++T Y A+ D++F E G G++G GAGK+++L + L G++
Sbjct: 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVP-QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+DG++ + P +R + V+ + + R+NL F + L K + E
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLS--RKEIKARIAE 116
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+ + L ++ FS G +Q + +ARAL+ +L LDE T+ +D +T + I
Sbjct: 117 LSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 1401 SSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+ K G VI +H + V + D +++L G +V +G+ + L
Sbjct: 177 -KQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 7e-23
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SI 674
+ VL VS + G +A++G G+GKS+LL +ILG + T GSI G I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 675 AYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY--I 727
YVPQ + ++RD +L G + KA VD +L VG ++A I
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI 130
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
GE LSGGQ+ R+ LARA+ D+ +LD+ + VD + I + T
Sbjct: 131 GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTI 185
Query: 788 ILCTHNVQAISA-ADMVVVMDKGQVKW 813
++ TH++ + D V+++++ V
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 8e-23
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 51/234 (21%)
Query: 1222 LIEFQNVTMRY-------KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
L+E +N+ + K A+ ++F+I+ G +G+VG +G GKS++ + L
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+IL +G +I ++ + + E
Sbjct: 64 EPTSGEILFEGKDIT--------------------------------KLSKEER----RE 87
Query: 1335 KCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT- 1392
+ V E +E VGL S GQRQ I +ARAL + K++ DE + +D
Sbjct: 88 R--VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145
Query: 1393 ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
A IL + E G+T + I+H +S V + D I ++ G +VE G + +
Sbjct: 146 AQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 8e-23
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 42/249 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IEF+NV+ + P+ LH+I+ I+ G V I+G +G+GKS++L + +L I G +
Sbjct: 1 MIEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1282 LVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-- 1336
+VDGL +N P R +R +V Q +LF H+ + LE
Sbjct: 59 IVDGLK-VNDPKVDERLIRQEAGMVFQQFYLFP----------HL-------TALENVMF 100
Query: 1337 ---HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
V KEE E VGL S GQ+Q + +ARAL K++
Sbjct: 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
Query: 1382 DECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLVEQGNP 1439
DE T+ +D + +L+ +GMT++ + H I + LI +D G + E G+P
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 1440 QTLLQDECS 1448
Q L+++ S
Sbjct: 221 QVLIKNPPS 229
|
Length = 240 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 30/292 (10%)
Query: 1173 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL----CGYQSLSPDWPFQGLIEFQNV 1228
+++L +SS + VSL+R+ ++ EEL +++ P I N
Sbjct: 590 LNILPMVISSIVQAS---VSLKRLRIFLS--HEELEPDSIERRTIKPGEGNS--ITVHNA 642
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
T + LP L+ I F+I G V +VG+ G GKSS+L+AL G +
Sbjct: 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV------- 695
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--G 1346
++G A VPQ ++ SLR+N+ ++ VLE C + ++E + G
Sbjct: 696 ------HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSE-- 1403
T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA I ++ I E
Sbjct: 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
K T I + H IS + +D I+++ G + E G+ Q LLQ + + F+ F+R
Sbjct: 810 LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGA-FAEFLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-22
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L+ ++L + G VA++G G+GKS+L +L G I G
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETL----KACTLDVDISLMVGGDMAYIG 728
+A VPQ P + + ++ +NI +G+ P + E + +A IS + G Y+G
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR---PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
E+GV LSGGQR R+A+ARA+ + I +LD+ SA+DA+ + ++ A+ M +T +
Sbjct: 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-SEQLVQQALETL-MKGRTTL 529
Query: 789 LCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ H + + AD +VVMD+G++ G+ A+L
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
VL VS L G + A++G GSGKS+++ + G + G
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 674 -IAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
++ V Q P + + +++DNI +G + E + IS + G +GEKG
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG 148
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ + + A+ ++T ++
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPE-RRTVLVIA 206
Query: 792 HNVQAISAADMVVVMDKGQV 811
H + + AD ++V+D G++
Sbjct: 207 HRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------I 674
VL ++L + KG VA++G G GKS+LL I G T G + G I
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74
Query: 675 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG----GDMA 725
YV Q +PW+ T+ DN+ G +S +E + ++ L +VG D
Sbjct: 75 GYVFQEDALLPWL---TVLDNVALGLELRGKSKAEA-RERAKEL---LELVGLAGFED-K 126
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y + LSGG R R+A+ARA+ + +LD+ A+DA R L + ++ + ++
Sbjct: 127 YPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-REELQDELL--RLWEE 179
Query: 786 TR---ILCTHNVQ-AISAADMVVVMDKG 809
TR +L TH+V A+ AD VVV+
Sbjct: 180 TRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 48/222 (21%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------ 672
L +SL + +G VA++G G GKS+LL I G T G + G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP 71
Query: 673 --SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSET-------LKACTLDVDISLM 719
YV Q +PW+ T+ DN+ G +E L+ L
Sbjct: 72 GPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLS------ 122
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G + AY + LSGG R R+ALARA+ D+ +LD+ SA+DA + +
Sbjct: 123 -GFENAYPHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL------TREQLQ 171
Query: 780 PHML------QKTRILCTHNV-QAISAADMVVVMDK--GQVK 812
+L KT +L TH++ +A+ AD VVV+ G++
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 3e-22
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 42/255 (16%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1275
L+E +N+++ + A+ ++F ++ G +GIVG +G+GKS + A+ L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 1276 -ICGGQILVDGLNIINTP---VRDLRGR-FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
I GG+IL DG ++++ +R +RG+ A++ Q P +L+P D I
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGDQ-IA 112
Query: 1331 SVLEKCHV---KEEVEAVGLETFVKESGIS------------FSVGQRQLICLARALLKS 1375
VL K+E + +E + GI S G RQ + +A AL +
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1376 SKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDH 1430
K+L DE T +D AQ +L+ + E KG +I I H + V + D + ++
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKE-LQRE-KGTALILITHDLGVVAEIADRVAVMYA 229
Query: 1431 GHLVEQGNPQTLLQD 1445
G +VE+G + + ++
Sbjct: 230 GRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-22
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF NVT Y P+ AAL IN +I G V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1283 VDGLNIINTPVRD---LRGRFAVVPQ-SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
V+G ++ + R LR + VV Q L + ++ +N+ F + + K V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRK-RV 117
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E VGL + S G++Q + +ARA++ S +L DE T N+D T + N
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 1399 AI-SSECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1433
+ G TV+ H V ++ L+ G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-22
Identities = 115/446 (25%), Positives = 192/446 (43%), Gaps = 67/446 (15%)
Query: 409 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 468
L LLY V + G+A + + + ++ +A ++ + + + TG ++ ++
Sbjct: 286 LLMLLYDPV-LTLI-GIAFAAINVLALQLVSRRRVDANRRLQQ---DAGKLTGVAISGLQ 340
Query: 469 ---TLKMYGWE-QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT----- 519
TLK G E FS W + K L+ ++ L PTL +
Sbjct: 341 SIETLKASGLESDFFSRWA----GYQAKLLNAQQELGVLTQIL-GVLPTLLTSLNSALIL 395
Query: 520 -FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS-E 577
G +M QL M+ +L +S + P+N+ L + + RL L +
Sbjct: 396 VVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455
Query: 578 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 637
E E+A + S S LS + V +++ T + + E ++ N SL L G
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGY------VELRNITFGY---SPLEPPLIEN-FSLTLQPG 505
Query: 638 SLVAVIGEVGSGKSS-------LLNSILGEMM--------LTHGSIHASGSIAYVPQVPW 682
VA++G GSGKS+ L GE++ + + + S+A V Q +
Sbjct: 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL--ANSVAMVDQDIF 563
Query: 683 ILSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
+ GT+RDN+ +DP L A DV I+ GG A + E G NLSGG
Sbjct: 564 LFEGTVRDNLTL---WDPTIPDADLVRACKDAAIHDV-ITSRPGGYDAELAEGGANLSGG 619
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNV 794
QR RL +ARA+ I +LD+ SA+D + + I N L++ T I+ H +
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN-------LRRRGCTCIIVAHRL 672
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL 820
I D ++V+++G+V G+ +L
Sbjct: 673 STIRDCDEIIVLERGKVVQRGTHEEL 698
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ VS + G + ++G G+GK++LL + G + T G I G
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
Query: 673 -SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMVGGD 723
I YVPQ P + T+R+N+ F K + E L+ L+ + V
Sbjct: 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT- 136
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 782
LSGG + RL++A A+ H ++ +LD+ S +D + +R + +
Sbjct: 137 ----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLRELAKE 185
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T +L TH ++ A D V++++ G++ G+ +L
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
|
Length = 293 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 22/224 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T RY AL ++ T+ G G++G GAGK++++ L LTP G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1338
+DG +++ P + LR R +PQ ++ ++R+ LD ++ + L+ V
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLD--YI-------AWLKGIPSKEV 107
Query: 1339 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
K V E V L K+ S S G R+ + +A+AL+ +L +DE TA +D +
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERI 167
Query: 1395 ILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+N +S + VI H + V ++ +++ +L+ G LV +G
Sbjct: 168 RFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 9e-22
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1223 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
IE +N++ Y AL ++ +IE G V IVG +G+GKS++LN L L G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1281 ILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKIWS 1331
+ VDG +I ++L R V QS P L + +N++ P + K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPK-KE 116
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
E+ E +E VGL + S GQ+Q + +ARAL K++ DE T N+D++
Sbjct: 117 RRERAE--ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 1392 TASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
T + + K G T++ + H D I+ L G +
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 43/189 (22%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
L+ VSL L G +VA++G GSGKS+LL +I G + T G I G +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-----KDIAK 65
Query: 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
+ +R I Y PQ LSGGQR R+
Sbjct: 66 LPLEELRRRIG----YVPQ--------------------------------LSGGQRQRV 89
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAAD 801
ALARA+ D+ +LD+ S +D +L + +T I+ TH+ A AAD
Sbjct: 90 ALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAAD 148
Query: 802 MVVVMDKGQ 810
V+V+ G+
Sbjct: 149 RVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
A+ +NF + G G +G GAGK++ + L L G V G +++ P R +R
Sbjct: 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-RKVRR 66
Query: 1299 RFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
+VPQ + E + R+NL+ L E+ +E +E L +
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP-KDEAEE-RAEELLELFELGEAADRPVGT 124
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRI 1416
+S G R+ + +A +L+ VL LDE T +D +T + + I + + G+T++ H +
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 1417 STVLNM-DEILILDHGHLVEQGNPQTL 1442
+ D I I+DHG ++ +G P+ L
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+NVT RY A++++N I G + ++G +G+GK++ + + RL G+I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDDLKIWSVLE-KCHV 1338
+DG +I +LR + V Q LF ++ +N L P L W + +
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP-----KLLKWPKEKIRERA 114
Query: 1339 KEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
E + VGL+ F S GQ+Q + +ARAL +L +DE +D T L
Sbjct: 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1397 QNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
Q + G T++ + H I + D I I+ +G +V+ G P +L
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 1e-21
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E +N++ Y AL ++ +E G V ++GR GAGK+++L + L G+I
Sbjct: 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1282 LVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCH 1337
+ DG +I P R G A VP+ +F ++ +NL + D +
Sbjct: 61 IFDGEDITGLPPHERARLG-IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ------- 112
Query: 1338 VKEEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
+ ++E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 113 -ERDLEEV-YELFPRLKERRNQRAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 1387 ----NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1441
+ + ++ GMT++ + L + D +L++G +V G
Sbjct: 166 GLAPKIVEEIFEAIKELRKEG--GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
Query: 1442 LLQDE 1446
LL D
Sbjct: 224 LLADP 228
|
Length = 237 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I F+NV+ +Y+ L D++F I G IVG G+GKS+I + + + G+I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGS---------LRDNLDPFHMNDDLKIWS 1331
+ I + LR +V Q+P F GS L ++ P+
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY---------- 116
Query: 1332 VLEKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
++ H V E ++ V + + S GQ+Q + +A L + V+ LDE T+ +D
Sbjct: 117 --DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1390 AQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
L + + +T+I+I H +S + D +++++ G + ++G P +
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 11/277 (3%)
Query: 281 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG--YVLAIALGLTSILKSFFDTQ 338
+ LL ++ + PLLL + + L G+G LAI L +L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 339 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHD 398
+ +L ++R + + ++ L + ++ S GE+ + ++ D + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 399 AWSLPFQIGVALYLL--YTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDER 456
+ V +++ Y K V LAI LLI ++ +A + K K +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVL-LAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 457 IRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF---WATTPT 513
E L+ IRT+K +G E+ ++ E + K + F +
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELE--RYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 514 LFSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPL 549
++L FG + ++ L VF L+L L PL
Sbjct: 238 SYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ ++T Y L DI+ ++ G G +G GAGK++ + + L G+I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1339
DG + + R + ++P + NL +L++ + L K +
Sbjct: 59 FDGKSYQKN--IEALRRIGALIEAPGFY-----PNLTARE---NLRLLARLLGIRKKRID 108
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E ++ VGL+ K+ FS+G +Q + +A ALL + +L LDE T +D L+
Sbjct: 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL 168
Query: 1400 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
I S G+TV+ +H +S + + D I I++ G L+E+G
Sbjct: 169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-21
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 8/221 (3%)
Query: 1222 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I +T R++ A+ ++FT++ G G++G GAGK++ L L L G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1338
VDG +++ P + R R V S L++ + R+NL+ F LK + + +
Sbjct: 61 FATVDGFDVVKEP-AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR--L 117
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E + +G+E + FS G RQ + +ARAL+ VL LDE T +D L+
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1399 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
I G ++ H + V + D +++L G +V +G
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 4e-21
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
+I ++++ RY + AL D++F++ G V IVG G+GKS++ LN L
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---A 61
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKIWSVLEK 1335
G I V G+ + V D+R + +V Q+P DN F + DD+ LE
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNP--------DN--QFVGATVQDDVAF--GLEN 109
Query: 1336 C---------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
V + + VG+E F+ S GQ+Q + +A L ++ LDE T+
Sbjct: 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 1387 NVDAQ-------TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439
+D + T L+ KG+TV++I H + D +++++ G ++E+G P
Sbjct: 170 MLDPRGRREVLETVRQLKEQ-----KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224
Query: 1440 Q 1440
+
Sbjct: 225 E 225
|
Length = 279 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 6e-21
Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 48/250 (19%)
Query: 1223 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
IE +N++ + AL++++ I G G++G +GAGKS+++ + L G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1281 ILVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DD--- 1326
+LVDG ++ ++L R + ++ Q H N D+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ----------------HFNLLSSRTVFDNVAL 105
Query: 1327 -LKI--WSVLE-KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
L++ E K V E +E VGL S GQ+Q + +ARAL + KVL D
Sbjct: 106 PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 1383 ECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG- 1437
E T+ +D T SIL+ I+ E G+T++ I H + V + D + ++D G LVEQG
Sbjct: 166 EATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
Query: 1438 ------NPQT 1441
+P+
Sbjct: 225 VSEVFSHPKH 234
|
Length = 343 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 7e-21
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 32/246 (13%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E +N++ Y P+ AL +IN I G V I+G +GAGKS++L + RL G I
Sbjct: 1 MLEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1282 LVDGLNIINTPVRDLRG----------RFAVVPQSPFL---------FEGSLRDNLDPFH 1322
L++G +I + LR + ++ + L ++ + R L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1323 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
D + S LE+ VGL + S GQ+Q + +ARAL + ++ D
Sbjct: 120 EEDKERALSALER---------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1383 ECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1439
E A++D +T+ + + + K G+TVI H++ D I+ L G +V G P
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
Query: 1440 QTLLQD 1445
L +
Sbjct: 231 SELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 7e-21
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 19/210 (9%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ V+L +P GSLVA++G GSGKS+LL I G G I +G
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK 73
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
I +V Q + T+RDNI FG + + + + ++ + L+ + +G++
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLELV---QLEGLGDRYP 128
Query: 733 N-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
N LSGGQR R+ALARA+ + +LD+ A+DA+V + + S + T + T
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGSSADL 820
H+ +A+ AD +VVM G+++ IGS ++
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 9e-21
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ ++L+ VSL + G VA++G GSGKS+LL +LG GS+ G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ V Q ++SG+I +NI G E + L DI M G
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
I E G LSGGQR RL +ARA+ I + D+ SA+D + I+S ++ L+ T
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA-IVSESLER---LKVT 637
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
RI+ H + I AD + V+D G+V G+ +L
Sbjct: 638 RIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-20
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L+ +SL + G VA++G GSGKS+L+N I G I G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 673 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+A V Q + + TI +NI +G+ D L A + + G IGE
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
GV LSGGQR RLA+ARA+ + I +LD+ SA+D + R + A + M +T ++
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV--QAALERLMQGRTTLVI 524
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + I AD +VVMD G++ G+ +L
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-20
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
E++ VL +SL L +G +A++G GSGKS+LL + G++ G I G
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 674 ------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I+ + Q P++ T+R+N+
Sbjct: 71 KALSSLISVLNQRPYLFDTTLRNNL----------------------------------- 95
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
G SGG+R RLALAR + + I +LD+ +D R +LS ++ + KT
Sbjct: 96 ---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS--LIFEVLKDKTL 150
Query: 788 ILCTHNVQAISAADMVVVMDKGQVK 812
I TH++ I D ++ ++ G++
Sbjct: 151 IWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 21/250 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
LIE + VT + L ++ + G + I+G +G+GKS++L + L G+I
Sbjct: 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1282 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1337
L+DG +I +L R R V+ Q LF ++ +N+ F + + K+ L +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIREL 124
Query: 1338 VKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
V ++E VGL + SG G R+ + LARA+ ++L LDE T+ +D
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSG-----GMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1392 TASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECS 1448
+A ++ I + G+TVI + H + ++L + D + +L G ++ +G P+ LL +
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP 239
Query: 1449 VFSSFVRAST 1458
F
Sbjct: 240 WVRQFFNGIR 249
|
Length = 263 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 25/239 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGG 1279
+EF++V+ Y S AL+DI+F+I G+ ++G G+GKS+I +N L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-------NDDLKIWS 1331
+I VDG+ + V D+R + +V Q+P F G+ + F + + +KI
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-- 123
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA- 1390
V++ + VG+ ++ + S GQ+Q + +A L K++ LDE T+ +D
Sbjct: 124 ------VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 1391 ---QTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
Q +++ + +TVI+I H I D++L+LD G L+ QG+P +
Sbjct: 178 GKEQILKLIRKL--KKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
Length = 282 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPF 1321
S++L + L G IL+DG + R LR R VV Q P LF E ++R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1322 HMNDDLK--IWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLARALLKSSKV 1378
+ + LE+ VGL F+ +E + S GQ+Q + +ARALLK K+
Sbjct: 61 LRDKEADARAEEALER---------VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 1379 LCLDECTA 1386
L LDE TA
Sbjct: 112 LLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N+ + L I+ T++ G V I+G +G+GKS++L + L G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1283 VDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV-- 1338
+DGL + + + +LR + +V Q LF H+ +VLE +
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP----------HL-------TVLENITLAP 101
Query: 1339 -------KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
K E E VGL S GQ+Q + +ARAL + KV+ DE
Sbjct: 102 IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 1384 CTANVDAQTA-----SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
T+ +D + + A GMT++ + H + + D ++ +D G +
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEE----GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-20
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ VL+ ++L + G + ++G GSGKS+L + HG + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL----DVDISLMVGG 722
+ V Q + S +IRDNI +P + + A L D L G
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALC---NPGAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
+ +GEKG NLSGGQR R+A+ARA+ I + D+ SA+D + I+ N M
Sbjct: 584 NTE-VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREIC 640
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFW 829
+T I+ H + + A D ++V++KGQ+ G +L LY+ W
Sbjct: 641 RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-20
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
VL V+L + G V ++G G GKS+LL I G T G I G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 674 -IAYVPQVPWIL--SGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 723
IA V Q + L T+ +NI FG K + E K L+
Sbjct: 76 GIAMVFQ-NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE---------- 124
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
+ K + LSGGQR R+ALARA+ +++LD+ LS +DA++ R ++ + I H
Sbjct: 125 -HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL-RVLMRSEIKKLHER 182
Query: 783 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T I TH+ V+A++ AD +VVM+ G+++ +G+ +L
Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 7e-20
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 48/275 (17%)
Query: 1192 SLERVLEY---MDVPQEELCGYQSLSPDWPFQ----GLIEFQNVTMRYKPSLPAA---LH 1241
+L R+ E+ ++ Q + F I +N+++R P L
Sbjct: 355 TLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR----TPDGQTLLS 410
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
++NF + G ++ I G +GAGK+S+L AL L P G+I + P
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI--------SMPADS---ALL 459
Query: 1302 VVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG--- 1355
+PQ P+L +G+LR+ L + D ++ +VL K GL +
Sbjct: 460 FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV---------GLGDLAERLDEED 510
Query: 1356 ---ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1412
S G++Q + AR LL K + LDE T+ +D +T L + E TVI++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570
Query: 1413 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1447
HR T+ N + L++ Q L
Sbjct: 571 GHR-PTLWNFHSRQL----ELLDDAGGQNLKPPAL 600
|
Length = 604 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+L+ +S +PKG + ++G GSGKS+LL + G + G + G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 674 ----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL-KACTLDVDISL-MVGGDMAY 726
+AYVPQ P G T+ + +L G+ Y K V+ +L ++G + +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGR-YPHLGLFGRPSKEDEEIVEEALELLG--LEH 130
Query: 727 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+ ++ V+ LSGG+R R+ +ARA+ + I +LD+ S +D +L
Sbjct: 131 LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL 190
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 816
T ++ H++ A AD ++++ G++ G+
Sbjct: 191 TVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1277
IE +++ + Y AL DIN I ++G +G GKS++L L R L P
Sbjct: 8 IEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1278 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G++L+DG NI V +LR R +V Q P F S+ DN+ L++ + +K
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-----AYGLRLHGIKDK 120
Query: 1336 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ E VE L VK +S + S GQ+Q +C+ARAL +VL +DE T+
Sbjct: 121 -ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1388 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQT 1441
+D + ++ I+ K T++ + H R+S D G LVE G
Sbjct: 180 LDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGPTDK 234
Query: 1442 L 1442
+
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 1e-19
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 30/258 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ F +VT R+ L +NF++ G +V ++G +G+GKS+IL L L PI GQI
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1283 VDGLNIINTP-------------VRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDD 1326
V+G + + P +R +R + +V QS LF ++ DN P +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--- 115
Query: 1327 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
L + + E ++ VGL S GQ+Q + +ARAL KV+ DE T+
Sbjct: 116 LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175
Query: 1387 NVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1442
+D + + N I +SE +T++ + H + D + D G +VEQG P +
Sbjct: 176 ALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 1443 L----QDECSVFSSFVRA 1456
++ F S V A
Sbjct: 235 FRQPKEERTREFLSKVIA 252
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 2e-19
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 53/204 (25%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
VL+ +SL + G +V ++G G+GKS+LL ++ G + + G I G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 674 ----IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
IAYVPQ L+ +A++ +
Sbjct: 71 LARKIAYVPQA--------------------------LELL------------GLAHLAD 92
Query: 730 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
+ N LSGG+R R+ LARA+ I +LD+ S +D +L KT +
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 789 LCTHNV-QAISAADMVVVMDKGQV 811
+ H++ A AD V+++ G++
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 2e-19
Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + +T R+ L AL D++F++ G G++G GAGK+++ N + G +L
Sbjct: 1 LEVRGLTKRFG-GL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
Query: 1283 VDGLNIINTPVRDLRGR-----FAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEK 1335
DG +I P ++ F Q P LF ++ +N+ + +
Sbjct: 59 FDGEDITGLPPHEIARLGIGRTF----QIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 1336 CHVKEEVEA-------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+E E VGL S GQ++ + +ARAL K+L LDE A +
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 1389 D----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+ + A +++ +G+TV+ + H + V+++ D + +LD G ++ +G P +
Sbjct: 175 NPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231
Query: 1444 QDE 1446
+
Sbjct: 232 NNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-19
Identities = 61/189 (32%), Positives = 107/189 (56%), Gaps = 14/189 (7%)
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH- 1337
G+IL+DG++I + ++DLR F++V Q P LF S+ +N+ +D V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKEDATREDVKRACKF 1334
Query: 1338 --VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+ E +E++ +T V G S S GQ+Q I +ARALL+ K+L LDE T+++D+ +
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1394 SILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDH----GHLVE-QGNPQTLLQDE 1446
+++ I + T+ITIAHRI+++ D+I++ ++ G V+ G + LL +
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ 1454
Query: 1447 CSVFSSFVR 1455
V+ +V+
Sbjct: 1455 DGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 28/242 (11%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1276
I+F+NV Y P P L +I+F +E G+ V +VG TG+GKS+++ NAL + +
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-- 60
Query: 1277 CGGQILVDGLNII----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD--P--FHMNDD 1326
G I + G +I N ++ LR + ++V Q P LFE ++ +++ P F ++D
Sbjct: 61 -SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 1327 LKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
K + ++ VGL E + +S S GQ + + +A + ++LCLDE
Sbjct: 120 EA------KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1386 ANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443
A +D + ++Q + G TVI + H + V D++L+L+HG L++ +P+ +
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1444 QD 1445
D
Sbjct: 234 SD 235
|
Length = 287 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 12/233 (5%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE N++ R+ AL D+N + G+ V ++G +G+GKS++L + L G+I
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
++G + RD + F V Q LF+ ++RDN+ F + + K K V+E
Sbjct: 59 LNGQDATRVHARDRKIGF--VFQHYALFKHLTVRDNI-AFGL-EIRKHPKAKIKARVEEL 114
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN--- 1398
+E V LE S GQRQ + LARAL +VL LDE +DA+ L++
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174
Query: 1399 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF 1450
+ E TV + H + + D I+++ +G + + G+P + + F
Sbjct: 175 KLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673
L ++ +P G VA++G GSGKS++ N + + G I G
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA----CTLDVDISLMVGGDMAYIGE 729
+A V Q + + TI +NI + + + S + +A +D I+ M G IGE
Sbjct: 419 VALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGE 476
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 787
GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I + A+ LQK R
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-AL---DELQKNRTS 532
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ H + I AD ++V++ G++ G+ A+L
Sbjct: 533 LVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 85.9 bits (214), Expect = 4e-19
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ L+ +SL + KG + ++G G+GK++L+ ILG + G I
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-------------- 57
Query: 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG---VNLSGGQR 739
+ GK D + E +K I + Y + LSGG +
Sbjct: 58 ---------KVLGK--DIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKLSGGMK 101
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
RLALA+A+ H ++ +LD+ S +D + R + KT +L +H ++
Sbjct: 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAER 160
Query: 800 -ADMVVVMDKGQV 811
D V +++ G++
Sbjct: 161 LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 4e-19
Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
+I +NV+ Y PA L +IN I+ G +GI+G+ G+GKS++ LN L R
Sbjct: 1 MIRLENVSYSYPDGTPA-LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---K 56
Query: 1279 GQILVDGLNIIN-TPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
G++LV G++ + + ++ +R +V Q+P F G + D ++L + + +
Sbjct: 57 GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEE-DLAFGPENLCLPPIEIRK 115
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SI 1395
V + +GLE + S + S GQ Q + LA L + L DE T+ +D + ++
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445
L+ KG T++ I H + + + D I+++D G +V +G P+ +L D
Sbjct: 176 LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 6e-19
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
VL +SL + KG + A+IG G+GKS+LL +ILG + + G I G
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74
Query: 673 -SIAYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY 726
I YVPQ V T++D +L G+ + K VD +L VG D+
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD 134
Query: 727 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGE LSGGQ+ R+ LARA+ D+ +LD+ + VD + + + +
Sbjct: 135 RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK-EIYDLLKELRQEG 189
Query: 785 KTRILCTHNVQAISA-ADMVVVMDKGQV 811
KT ++ TH++ + A D V+ +++ +
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-19
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 23/240 (9%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I FQ V RY+ P AL+D+N +I G+ V I+G TG+GKS++ LN L + T
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS- 61
Query: 1277 CGGQILVDGLNII-----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKI 1329
G + + G +I N ++ LR + +V Q P LFE ++ ++ MN +
Sbjct: 62 --GTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118
Query: 1330 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+K +E +E VGL E + S S GQ + + +A L +VL LDE TA +
Sbjct: 119 EDAKQK--AREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1389 DAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445
D + + + KG+T + + H + D+I+++ G + QG P+ + D
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 9e-19
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMML--------THGSIHA 670
VL ++ L G +VA++G GSGKS+ L G+++L H +H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 671 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQS-YSETLKACTLDVDISLMVGGDMAYIGE 729
+A V Q P + SG++R+NI +G P KA I G +GE
Sbjct: 556 Q--VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 787
KG LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ ++ + +R
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC------EQLLQESRSRASRTV 667
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+L H + + AD ++V+ KG V +G+ L
Sbjct: 668 LLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
L+ ++L + G V ++G G GK++ L I G T G I+ G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 673 --SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
IA V Q P + T+ DNI FG + E ++ A L ++
Sbjct: 71 DRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE------ 121
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ K LSGGQR R+AL RA+ ++++D+ LS +DA++ R + +
Sbjct: 122 ---HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL-RVQMRAELKRLQ 177
Query: 782 M-LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
L T I TH+ V+A++ AD + VM+ GQ++ IG
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +NV+ Y + AL ++ I+ G ++G +G GK+++L + G+IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-- 1334
+DG +I N P + V Q+ LF P H+ ++ L++ + +
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALF---------P-HLTVFENIAFGLRLKKLPKAE 106
Query: 1335 -KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
K V E ++ V LE + S GQ+Q + +ARAL+ KVL LDE +D +
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 1394 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
+Q + K G+T + + H L M D I +++ G + + G P+
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 1223 IEFQNVTMRYKPSLPAA---LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
IE +N+++ + P L D++F I+ G ++ I G +G GKSS+ AL L P G
Sbjct: 1 IELENLSL----ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS-VLEKCHV 1338
+I +PQ P+L G+LR+ L + W VL
Sbjct: 57 RI-----------GMPEGEDLLFLPQRPYLPLGTLREQL--------IYPWDDVL----- 92
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
S G++Q + AR LL K + LDE T+ +D ++ L
Sbjct: 93 --------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1399 AISSECKGMTVITIAHRIS 1417
+ G+TVI++ HR S
Sbjct: 133 LLKEL--GITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS---SILNALFRLTPICGG 1279
+E ++ RY AL D++FT+ G V ++G GAGKS S+L L+ G
Sbjct: 2 LEVAGLSFRYGAR--RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE---G 56
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFHMNDDLK-IWSVLEKCH 1337
QI V G ++ P L R VV Q P L + S+R NL +H L + +
Sbjct: 57 QISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLR-YHA--ALHGLSRAEARAR 112
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ E + +GL + + G R+ + +ARALL +L LDE T +D + + +
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 1398 NAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445
+ + + G++V+ H + + D +++L G ++ G L
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 1e-18
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L ++ ++ G+ VG+VG GAGK+++L A+ G +LV G ++ R R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 1300 FAVVPQSPFL-FEGSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1354
A VPQ L FE +R ++ P H + W+ ++ V+ +E G+ F
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTP-HRSR-FDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1410
S S G+RQ + LARAL +++ VL LDE TA++D +T +++ + G T +
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD---GKTAV 193
Query: 1411 TIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLL 1443
H L++ DE+++L G + G P +L
Sbjct: 194 AAIHD----LDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-18
Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 92/425 (21%)
Query: 1083 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1142
E L G T+ ++ E + KF LY + L A+ SL + ++ FI++ A
Sbjct: 241 EALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI---LKANFMESLHIGMINGFILASYAF 297
Query: 1143 MAVIGSR---GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1199
G+R +L G + I LLG +S F T + L + EY
Sbjct: 298 GFWYGTRIIISDLSNQQPNNDFHG-----GSVISILLGVLISMFMLT----IILPNITEY 348
Query: 1200 MD-----------VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALH-DINFTI 1247
M + ++ L I+F+NV Y ++ D+NFT+
Sbjct: 349 MKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTL 408
Query: 1248 EGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1306
G VG +G GKS+IL + RL P G I+ D N+ + ++ R + VV Q
Sbjct: 409 TEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQD 468
Query: 1307 PFLFEGSLRDNL-------------------DPFHMNDDL-KIWSVLEKC---------- 1336
P LF S+++N+ D ++ K S KC
Sbjct: 469 PLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528
Query: 1337 -------HVKEEVEAV-----------------------GLETFVKESGISFSVGQRQLI 1366
+++ + + ET V + S GQ+Q I
Sbjct: 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588
Query: 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG---MTVITIAHRISTVLNMD 1423
+ARA++++ K+L LDE T+++D ++ ++Q I++ KG I IAHR+ST+ +
Sbjct: 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN-LKGNENRITIIIAHRLSTIRYAN 647
Query: 1424 EILIL 1428
I +L
Sbjct: 648 TIFVL 652
|
Length = 1466 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+N+ YK ++D++ + G VG++G GAGK++ + L G+IL+D
Sbjct: 8 ENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 1286 LNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCHVKE 1340
+I P+ R R + +PQ +F ++ DN+ DLK K +
Sbjct: 66 EDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK--AERKEELDA 122
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+E + S S G+R+ + +ARAL + K + LDE A VD +Q I
Sbjct: 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 1401 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
+ +G+ V+ H + L++ D I+ G ++ +G+P+ ++ +E
Sbjct: 183 KHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 19/236 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-----LTPI 1276
LIE +++ Y S AL++INF +++ ++G GAGKS+ LFR L P
Sbjct: 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKST----LFRHFNGILKP- 56
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G +L+ G I +R++R +V Q+P +F ++ ++ +N L +V
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH 116
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ V + +GLE S G+++ + +A + +VL LDE TA +D Q
Sbjct: 117 R--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 1395 ILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL-LQDE 1446
L + ++ E GMTVI H++ V M D I ++D G +V G + + LQ +
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 5e-18
Identities = 91/330 (27%), Positives = 145/330 (43%), Gaps = 40/330 (12%)
Query: 509 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 568
A+T ++ + G ++ +L V + N LI L+ I F + +
Sbjct: 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFIT---QIFEARAK 305
Query: 569 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628
L F + + E+ A++P L N AV + T + Q V
Sbjct: 306 LEDFFDLEDSVFQREEPADAPE-----LPNVKG---AVEFRHIT---FEFANSSQGV--F 352
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIA 675
VS G VA++G G+GK++L+N + T G I G SIA
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 676 YVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
V Q + + +IR+NI G+ D + Y A D + G D +GE+G
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNR 471
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV-ARWILSNAIMGPHMLQKTR--ILC 790
LSGG+R RLA+ARA+ + I +LD+ SA+D + AR + NAI L+K R +
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR--VKNAI---DALRKNRTTFII 526
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + + AD+V+ +D+G++ GS +L
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQ 679
V L+ VSL +P G LVA++G GSGK++LL I G G+I A+
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 680 VPWILSG-------TIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMAYIGEK 730
V ++ T+ DN+ FG P+S E + + L+ + ++ ++
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV---QLDWLADR 132
Query: 731 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMGPHML 783
LSGGQR R+ALARA+ + +LD+ A+DA+V RW+ L L
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH------DEL 186
Query: 784 QKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
T + TH+ +A+ AD VVVM+KG+++ +G+ ++
Sbjct: 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 6e-18
Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 17/229 (7%)
Query: 1222 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+I N T + P AL+ ++ I G V ++G GAGKS++LNA+
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFL---FEGSLRDNLDPFHMNDDLKIWSVLE- 1334
GQIL+DG+++ V A V Q P E ++ +NL + S
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN 120
Query: 1335 ---KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ +E + + GLE + + S GQRQ + L A L K+L LDE TA +D
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1390 AQTASILQNA---ISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLV 1434
+TA + I E K +T + + H + L+ LI L G +V
Sbjct: 181 PKTAEFVMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VS + G + ++G G+GKS+L+ ++ + G I G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 673 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
S+ +PQ P + SGTIR N+ F + D + Y L+ + E G
Sbjct: 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY-GALR------------------VSEGG 123
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+NLS GQR L LARA+ + +LD+ +++D I + T +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI--QKTIREEFTNSTILTIA 181
Query: 792 HNVQAISAADMVVVMDKGQVKWIGS 816
H ++ I D ++VMD G+VK
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 7e-18
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 33/244 (13%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC- 1277
IE +N+ + Y AL +IN I ++G +G GKS++L +L R L P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1278 -GGQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G++L DG +I + V +LR R +V Q P F S+ DN+ ++ + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI-----AYGPRLHGIKD 113
Query: 1335 KCHVKEEVEA----VGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
K + E VE L VK+ S + S GQ+Q +C+ARAL +VL LDE T+
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQ 1440
+D ++ I K T++ + H RIS D G LVE G +
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS-----DRTAFFYDGELVEYGPTE 228
Query: 1441 TLLQ 1444
+
Sbjct: 229 QIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 7e-18
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 63/218 (28%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + +T R+ + A L ++ ++ G ++G GAGKS+++ L L G+IL
Sbjct: 1 LELRGITKRF-GGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
VD G P
Sbjct: 59 VD---------------------------GKEVSFASPRDARR----------------- 74
Query: 1343 EAVGLETFVKESGISF----SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+GI+ SVG+RQ++ +ARAL +++++L LDE TA + L
Sbjct: 75 -----------AGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1399 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1434
I G+ VI I+HR+ V + D + +L G +V
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
++E +++ Y P AL INF E G V ++G GAGKS++ N + + T
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---S 56
Query: 1279 GQILVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G++L+ G + + ++R +V Q+P LF ++ +++ +N L V +
Sbjct: 57 GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ VKE ++AVG+E F + S GQ++ + +A L +++ LDE T+ +D AS
Sbjct: 117 R--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1446
+ + +G+T+I H + V + D++ ++ G ++++G P+ + D
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 62/210 (29%), Positives = 85/210 (40%), Gaps = 65/210 (30%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
Q VLN VSL + G +VA++G GSGKS+LL I G GSI G
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
I V Q + T+ +NI G
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------- 100
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-----NAIMGPH 781
LSGGQ+ R+ALARA+ D+ +LD+ SA+D R + + A
Sbjct: 101 -------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA----- 148
Query: 782 MLQKTRILCTHNV-QAISAADMVVVMDKGQ 810
L T +L TH++ +A AD VVV+ G+
Sbjct: 149 QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-17
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
+ N+VL ++L +P VA++G GSGKS+L + ++G LT G I G
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 673 ----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+A V Q P +L+ T N+ G++ + + L+ L + G +G
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 787
E+G NLS GQ+ LALAR + I +LD+ + +D+ + I L R
Sbjct: 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-------QQALAAVRE 524
Query: 788 ----ILCTHNVQAISAADMVVVMDKGQV 811
++ H + I AD ++V+ +GQ
Sbjct: 525 HTTLVVIAHRLSTIVEADTILVLHRGQA 552
|
Length = 592 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------- 673
+ L VSL + KG V +IG GSGKS+LL + G + T G + G
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 674 -------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGD 723
+ V Q P + T+ D + FG ++ + V +VG
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLGLPREEIEERVAEALELVG-- 127
Query: 724 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG--P 780
+ + ++ NLSGGQ+ R+A+A + G +I +LD+ + +D + R +L ++
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL--ELLKKLK 185
Query: 781 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
KT I+ TH+++ + AD VVV+D G++ G A++
Sbjct: 186 EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
|
Length = 235 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
++ +SL + KG + ++G G+GK++ L + GE+ T G+ + +G
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73
Query: 673 --SIAYVPQ---VPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGG 722
S+ Y PQ + L T+R+++ F G +V++ L V G
Sbjct: 74 RQSLGYCPQFDALFDEL--TVREHLRFYARLKGLP---------KSEIKEEVELLLRVLG 122
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
++ LSGG + +L+LA A+ G + +LD+ S +D R I +
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-------L 175
Query: 783 LQKTR-----ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+ + R IL TH++ A D + +M G+++ IGS +L
Sbjct: 176 ILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+N++ ++ + L D+N TIE G I+G +G+GKS++LN + L GQ+ ++G
Sbjct: 2 KNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 1286 ---LNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ + R + + Q+ L E ++ +NLD + K S EK K+
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD---LGLKYKKLSKKEKREKKK 116
Query: 1341 EV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E E VGL +K+ S G++Q + LARA+LK ++ DE T ++D + + +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1400 ISSECK-GMTVITIAH 1414
+ G T+I + H
Sbjct: 177 LLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N+ +Y A+ ++F + G G++G GAGK++ + L L G+
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
V G +++ P R++R R +V Q + + + +NL + + + + E
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP-GAERRE-RIDEL 115
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
++ VGL ++S G R+ + +AR+L+ +VL LDE T +D QT + + I
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 1402 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1442
E GMT++ H + + D + I+DHG ++ +G P+ L
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 1222 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLT 1274
+I+ +NV+ +Y+ + AL D+N ++ G + I+GR G+GKS+I +NAL L
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61
Query: 1275 PICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMND 1325
P G++ VDGL+ + + D+R + +V Q+P DN D +
Sbjct: 62 P-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP--------DNQIVATIVEEDVAFGPE 112
Query: 1326 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+L I + V E ++ VG+ + + + S GQ+Q + +A L + + DE T
Sbjct: 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 1386 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1440
A +D + N I K G+T+I I H + + D I+++D G +V +G P+
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPK 229
|
Length = 280 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 22/239 (9%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
I QNV+ Y+ P AL D+N TIE G+ +G TG+GKS+I+ L L G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1280 QILVDGLNIINTP----VRDLRGRFAVV---PQSPFLFEGSLRD-NLDP--FHMNDDLKI 1329
+ VD I +T ++ +R + +V P+S E L+D P F ++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1330 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
EK + VG+ E+ +++ S GQ + + +A L K+L LDE TA +
Sbjct: 123 ALAREKLAL------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1389 DAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
D + L GMT++ + H + V N D + +L+ G LV G P+ + QD
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-17
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 40/231 (17%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN---TPVRD 1295
A+ I+ T+ G +G+VG +G+GKS++ AL RL P G+I DG +I +R
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNL-------DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL 1347
LR R VV Q P+ GSL + + +++ S E+ V E +E VGL
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVIEALEEVGL 415
Query: 1348 -----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQN 1398
+ E FS GQRQ I +ARAL+ +++ LDE T+ +D AQ +L++
Sbjct: 416 DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 1399 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQT 1441
+ G++ + I+H ++ V + ++++ G +VEQG NPQ
Sbjct: 472 L--QQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH 520
|
Length = 534 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 45/218 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +SL + KG V ++G G GK++LL I G T G+I+ G
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 673 -----SIAYVPQVPWILSGTIRDNI---LFGKNYDPQSYSETLKACTLD-VDISLMVGGD 723
S A P + T+ DNI L + +E + A LD V + G +
Sbjct: 79 GIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERV-AELLDLVGLP---GSE 128
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y G+ LSGGQ+ R+ALARA+ + +LD+ LSA+DA+V R L I L
Sbjct: 129 RKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARV-REHLRTEIRQ---L 180
Query: 784 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 816
Q+ T I+ TH+ +A+S AD +VVM+ G ++ +G+
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 3e-17
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 28/234 (11%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + ++ + AL ++ T+ G ++G GAGKS+++ L + P G+I
Sbjct: 8 LLELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1282 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-------------PFHMNDDL 1327
L+DG + ++P L A V Q E SL NL F + D
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQ-----ELSLVPNLSVAENIFLGREPTRRFGLID-- 118
Query: 1328 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ + +E + +GL+ S+ QRQ++ +ARAL ++VL LDE TA
Sbjct: 119 --RKAMRR-RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1388 VDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1439
+ + L + I + +G+ +I I+HR+ V + D I +L G +V
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (207), Expect = 4e-17
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 13/243 (5%)
Query: 1213 LSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272
L D+ + E +N Y LHD+N I+ +G +G GKS+ L L +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130
Query: 1273 LTPICGG-----QILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND 1325
L + G +I G N + + +LR R +V Q P FE S+ DN+ N+
Sbjct: 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 1326 DLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCL 1381
+ +LEK V++ +++ L VK+ +G + S GQ+Q +C+ARA+ +VL +
Sbjct: 191 GINDRKILEKI-VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
DE T+ +D + ++ I K ++I + H ++ + DE + G + E G +
Sbjct: 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309
Query: 1441 TLL 1443
T+
Sbjct: 310 TIF 312
|
Length = 329 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L +++ +E G I+G TG+GKS +L + G+IL++G +I N P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMND------DLKIWSVLEKCHVKEEV----EAVGLET 1349
+ VPQ+ LF HM LK V +K ++ +V E +G++
Sbjct: 73 ISYVPQNYALFP----------HMTVYKNIAYGLKKRKV-DKKEIERKVLEIAEMLGIDH 121
Query: 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GM 1407
+ + S G++Q + +ARAL+ + K+L LDE + +D +T L+ + K G+
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 1408 TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
TV+ + H + D++ I+ +G L++ G P+ +
Sbjct: 182 TVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NVT R+ AL D+N I G V ++G +G GK++ L + L G+I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLE---KCHV 1338
+ G ++ + P +D R A+V Q+ L+ ++ DN + LK+ V + V
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDN-----IAFGLKLRKVPKDEIDERV 111
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E E + +E + S GQRQ + L RA+++ KV +DE +N+DA+ L+
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK----LRV 167
Query: 1399 AISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ +E K G T I + H + M D I +++ G + + G
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 7e-17
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 33/218 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+ LN +SL + +G V VIG G+GKS+LLN+I G++ T G I
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 669 -HASGSIAYVPQVPWILSG-----TIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVG 721
+ +A V Q P L+G TI +N+ ++ + S L +
Sbjct: 76 AKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 722 GDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LS 774
+ E ++ LSGGQR L+L A H I +LD+ +A+D + A ++ L+
Sbjct: 134 LGLGL--ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 775 NAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
I+ H L T ++ THN+ A+ + ++++ G++
Sbjct: 192 AKIVEEHKL--TTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (203), Expect = 8e-17
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 18/238 (7%)
Query: 1222 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+I+F+ V Y+P+ P AL DI+ ++ G+ ++G TG+GKS++L L L
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1279 GQILVDGLNIINT-------PVRDLRGRFAVVPQSPFLFEGSLRD-NLDPFHMNDDLKIW 1330
G++ V + + +T PVR G P+S E L+D P + I
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP----QNFGIP 116
Query: 1331 SVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ E++E VGL + F ++S S GQ + + +A L +VL LDE TA +D
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1390 AQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445
+ + S G TV+ + H + V + D + +L+ GH++ G P + Q+
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 17/248 (6%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ + +N+T R+ + + ++N TI+ GT V ++G +G GK+++L + L G
Sbjct: 4 KNFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 1280 QILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEK 1335
QI +DG ++ + + RD+ +V QS LF SL +N+ M L + K
Sbjct: 62 QIFIDGEDVTHRSIQQRDI----CMVFQSYALFPHMSLGENVGYGLKM---LGVPKEERK 114
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
VKE +E V L F S GQ+Q + LARAL+ KVL DE +N+DA
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 1396 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-S 1451
++ I + +T + + H S + D +++++ G +++ G+PQ L + S F +
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMA 234
Query: 1452 SFVRASTM 1459
SF+ + +
Sbjct: 235 SFMGDANI 242
|
Length = 351 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 22/224 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNI--INT 1291
L DIN I +G +G GKS+ L R+ P C G++ +DG+++ ++T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH--MNDDLKIWSVLEKCHVKEEVEAVG 1346
V LR + +V Q P F S+ DN+ H + K+ ++EK + +VG
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-----SLTSVG 134
Query: 1347 L----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
L +K+S S GQ+Q +C+ARA+ +L +DE + +D ++++N I
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
K T+I + H + + D + G +VE Q + ++
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+E + +T R+ P + A D++ +++ G ++G GAGKS+++ LF L G+I
Sbjct: 4 ALEMRGITKRF-PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1282 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEG-SLRDNL-----DPFHMNDDLKIWSVLE 1334
VDG + I +P +R +V Q L ++ +N+ D +
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARA 119
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA- 1393
+ +KE E GL SVG++Q + + +AL + +++L LDE TA + Q A
Sbjct: 120 R--IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 1394 ---SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1439
IL+ + G T+I I H++ V+ + D + +L G +V +P
Sbjct: 178 ELFEILRRLAAE---GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP 224
|
Length = 501 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
LN VSL + +G + ++GE GSGKS+L + G + GSI G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 674 --IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ V Q P T+ + + P S++ + ++ VG
Sbjct: 82 RPVQMVFQDPYSSLNPRR----TVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+++ + LSGGQR R+A+ARA+ + +LD+ SA+D V IL+ + L+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL----ELK 188
Query: 785 KTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821
K R + +H++ + D + VMD GQ+ IG + +L
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 38/221 (17%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
++ +SL + KG V ++G G GK++LL I G + G I G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 673 SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDM 724
I V Q S T+ +N+ FG + +KA + L +VG
Sbjct: 78 PIGMVFQ-----SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA---LELVGLEGF 129
Query: 725 A--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
A + LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R + +
Sbjct: 130 ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL-REQMRKELKELQR 184
Query: 783 -LQKTRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ Q A++ +D + VM+ G+++ +G+ ++
Sbjct: 185 ELGITFVYVTHD-QEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + ++ R+ A++D++ + G VG++G GAGK+++ N + G +
Sbjct: 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVP--QSPFLFEG-SLRDN-LDPFHMNDDLKIWSVL-EKC 1336
+ G +I P R + Q LF G ++ +N H L + +L
Sbjct: 62 IFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHAR--LGLSGLLGRPR 118
Query: 1337 HVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
KEE EA VGL + S GQ++ + +ARAL K+L LDE A
Sbjct: 119 ARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 1387 NVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
++ + L I + G+T++ I H + V+ + D I++L++G ++ +G P+ +
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
Query: 1444 QDE 1446
+
Sbjct: 239 NNP 241
|
Length = 250 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 33/245 (13%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I F NV+ Y+ P A+HD+N E G IVG+TG+GKS++ +NAL + T
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT- 61
Query: 1277 CGGQILVDGLNIINTP----VRDLRGRFAVVPQSP--FLFEGSLRDNLD--PFHMNDDLK 1328
G + VD + I + +R +R R +V Q P LFE ++ + P + +L
Sbjct: 62 --GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 1329 IWSVLEKCHVKEEVEAVGLE-----TFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
VK + ++ + +S S GQ + I + L + ++ LDE
Sbjct: 120 --------EVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 1384 CTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1440
TA +D Q+ + + S + T+I ++H ++ V DE++++ G +V Q +P+
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 1441 TLLQD 1445
L +D
Sbjct: 232 ELFKD 236
|
Length = 286 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + V Y L++I+ ++ G + I G +G GKS++L + L G +
Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKE 1340
L +G ++ R + + Q+P LF ++ DNL P+ + + ++ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALD 115
Query: 1341 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ L ++ + ++ S G++Q I L R L K+L LDE T+ +D ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 1400 I 1400
I
Sbjct: 176 I 176
|
Length = 223 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1295
AL DIN IE ++G +G GKS+ L R+ G + ++G ++ N V
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNLD---PFHM------NDDLKIWSVLEKCHVKEEVEAVG 1346
LR +V Q P +F S+ +N+ H ++ + L+K + EEV+
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK- 135
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1406
+K++ ++ S GQ+Q +C+ARAL K+L LDE T+ +D ++ +++ +
Sbjct: 136 ----LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 1407 MTVITIAHRISTVLNMDEILILDH-GHLVEQGNPQTLLQD 1445
+++I + H + + + H G L+E G + ++
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-16
Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINTPV 1293
AL I+ IE + V +G +G GKS+ L R+ + G+I +DG NI + V
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1294 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV------ 1345
+ +LR +V Q P F S+ +N+ L++ V + +++ VE
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFENV-----AYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 1346 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
++ +KES + S GQ+Q +C+ARA+ S VL +DE + +D + + ++ I
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
K T++ + H + + D+ G +VE + + + +
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235
|
Length = 250 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I +NV+ Y + L D++ I G I+G GAGKS++L+ + RL G+I
Sbjct: 1 MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL-------- 1333
+DGL + +TP ++L + +++ Q +N H+N L + ++
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQ----------EN----HINSRLTVRDLVGFGRFPYS 104
Query: 1334 -------EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
++ + E +E + LE S GQRQ +A L + + + LDE
Sbjct: 105 QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1387 NVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQG 1437
N+D Q IL+ + G T++ + H I N D I+ L +G +V+QG
Sbjct: 165 NLDMKHSVQIMKILRRLA--DELGKTIVVVLHDI----NFASCYSDHIVALKNGKVVKQG 218
Query: 1438 NPQTLLQDE 1446
+P ++Q E
Sbjct: 219 SPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1280
+ +V Y LP + T+ G V I+G +GAGKS++LN A F TP G+
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPA-SGE 55
Query: 1281 ILVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1338
IL++G++ +P + R +++ Q LF ++ N+ ++ LK+ + ++ V
Sbjct: 56 ILINGVDHTASPPAE---RPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKV 110
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ 1397
+ VGL F+K S GQRQ + LAR L++ +L LDE + +D A A +L
Sbjct: 111 EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLA 170
Query: 1398 --NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443
+ + E + MT++ + H D ++ LD+G + QG+ Q LL
Sbjct: 171 LVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 10/232 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ + + Y AL IN I+ G I+G GAGKS++ L + G+I
Sbjct: 5 ILKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1282 LVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
L DG ++ + LR +V Q P LF S+ ++ +N L V ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-- 121
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D S +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 1398 NAISSECKGM--TVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1446
+ K + T+I H I V L D + ++ G ++ QGNP+ + ++
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 44/225 (19%)
Query: 1223 IEFQNVTMRYKPSLPAA----LHDINFTIEGGTQVGIVGRTGAGKSSILNAL--FRLTPI 1276
+ F+N+T+ K S + L +++ + G I+G +GAGKS++LNAL R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
G++L++G R R VPQ DD+ +
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQ-------------------DDI----LHPTL 97
Query: 1337 HVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V+E + A L G+ S G+R+ + +A L+ + +L LDE T+ +D+ +A
Sbjct: 98 TVRETLMFAAKL------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 1396 LQNAISSECK-GMTVITIAHRIST-VLNM-DEILILDHGHLVEQG 1437
+ + + G T+I H+ S+ + + D++L+L G ++ G
Sbjct: 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-16
Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 53/237 (22%)
Query: 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664
+++ D T +W + L S +P GS+ A++G GSGKS+L +++G + L
Sbjct: 6 GIVVNDVTVTW-----RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 665 HGSIHASGS----------IAYVPQ---VPWILSGTIRDNILFG-----------KNYDP 700
G I G +AYVPQ V W + D ++ G K D
Sbjct: 61 SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120
Query: 701 QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 760
Q + L VD MV IGE LSGGQ+ R+ LARA+ + +LD+
Sbjct: 121 QIVTAALAR----VD---MVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 761 LSAVDAQVARWILSNAIMGPHMLQ------KTRILCTHNVQAISAADMVVVMDKGQV 811
+ VD + I+S +L+ KT ++ THN+ +++ VM KG V
Sbjct: 170 FTGVDVKTEARIIS-------LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTV 219
|
Length = 272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +N++ R+ A+++I+ T+ + G++G GAGKS++L + + G+I+
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHV 1338
DG +DL +++ +SP L+E + R+NL D +I VL
Sbjct: 59 FDGHPWTR---KDLHKIGSLI-ESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNI--- 111
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
V L K+ FS+G +Q + +A ALL K+L LDE T +D L+
Sbjct: 112 ------VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 1399 AISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
I S +G+TVI +H +S V + D I I+ G L QG
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------HASGS---- 673
L+ VS + KG + ++GE GSGKS+L +ILG + T GSI S
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79
Query: 674 ----IAYVPQVPWILSG-----TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P +S TI + I + + S E K L + + VG
Sbjct: 80 RRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV--GVGLP 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ LSGGQR R+A+ARA+ + + D+ SA+D V IL +L
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL-------DLL 188
Query: 784 QK-------TRILCTHNVQAISA-ADMVVVMDKGQV 811
+K T + TH++ ++ AD V VM G++
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+L +S+ G++ ++G G+GKS+L+ I + T GSI G
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 673 -SIAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q P + GT++DNI +G KN D + Y +VG +
Sbjct: 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS-------------IVGLNKE 123
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y NLSGG+ R+++AR + + ++ +LD+ SA+D I + + +
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQV 811
T I THN+ QA D ++KG +
Sbjct: 184 TVIWITHNMEQAKRIGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------LVDGLNIINTPVRD 1295
I+F + GI G +GAGKS++L + L GG I L D IN P +
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 1296 LRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1351
R + +V Q LF ++R+NL N + +I V E ++ +GL+ +
Sbjct: 75 -R-KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI-------SVDELLDLLGLDHLL 125
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTV 1409
S G++Q + LARAL ++L LDE + +D L + K + V
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 1410 ITIAHRISTVLNM-DEILILDHGHLVEQG 1437
I + H +S + D I++++ G L G
Sbjct: 186 IFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 5e-16
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG------------EMMLTHGSIHA-SG 672
L+ +SL + KG V ++G GSGKS+LL + G LT S+
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 673 SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q P T+ + + FG E + V+ +L + G
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER----VEEALELVGLEGLRDRS 131
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ+ R+A+A + DI +LD+ + +D R +L + KT I+
Sbjct: 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIV 190
Query: 791 THNVQAISA-ADMVVVMDKGQ 810
TH++ + AD V+V++ G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +NV+ R+ A L D++ I G V ++G +G+GK+++L + L G IL
Sbjct: 3 IEVRNVSKRF-GDFVA-LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE------- 1334
G + + PV++ F V Q LF ++ DN+ F L++ E
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFRHMTVFDNV-AF----GLRVKPRSERPPEAEI 113
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ V E ++ V L+ S GQRQ + LARAL KVL LDE +DA+
Sbjct: 114 RAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1395 ILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
L+ + + +T + + H L + D +++++ G + + G P
Sbjct: 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 5e-16
Identities = 95/474 (20%), Positives = 178/474 (37%), Gaps = 38/474 (8%)
Query: 973 KVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032
K+ + + KI++ P+ ++ R+L +SD+ I + + ++ A + LG A
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIIL-TLGSAA 140
Query: 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS----RELRRLDSVSRSPIYASFTETLNGS 1088
L+Y+ LL V + + F + R + + + L G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETED----KLQNDYQTILEGR 196
Query: 1089 S--TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1146
T+ ++E + Y+ + L A S I + +I
Sbjct: 197 KELTLNRERAEYVHNNLYIPDAQEYRHHI---------IRANTFHLLAVNWSNIMLLGLI 247
Query: 1147 GSRGNLPATFSTPGLVGLALSYAAPIVSL---LGNFLSSFTETEKEMVSLERVLEYMDVP 1203
G L + +A + ++ L L + + V+ ++ + P
Sbjct: 248 GLVFWLALSLGWAS-TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAP 306
Query: 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1263
+ PDW +E +NV Y+ + + IN TI+ G V ++G G+GK
Sbjct: 307 YKADFPRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGK 362
Query: 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1323
S++ L L G+IL+DG + + D R F+ V LF+ L +
Sbjct: 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKAS 420
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
++ W L++ + + S + S GQ++ + L ALL+ +L LDE
Sbjct: 421 PQLIEKW--LQRLELAHKTSLNDGRF----SNLKLSTGQKKRLALLLALLEERDILVLDE 474
Query: 1384 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVE 1435
A+ D + K G T+ I+H ++ D +L + +G L E
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 33/241 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1277
+E + ++ Y ALHDI+ E ++G +G GKS+ L L R L P
Sbjct: 7 MEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 1278 GGQILVDGLNIINT--PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G+IL+DG NI + V +LR R +V Q P F S+ +N+ L++ V +K
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVNGVKDK 119
Query: 1336 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
++ E VE L VK ES + S GQ+Q +C+ARAL +VL +DE +
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1388 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQT 1441
+D ++ I T+I + H R+S D G L+E G +
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVS-----DVTAFFYMGKLIEVGPTEQ 234
Query: 1442 L 1442
+
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------SIAYVPQV 680
+ VS +G + ++GE G+GK++LL I ++ G + G ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 681 PWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+L G T R+N+ F + + +KA ++ L + Y+ +
Sbjct: 78 G-VLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLL---EYLDRRV 131
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
S G + ++A+ARA+ H I +LD+ S +D R + I + I +
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 792 HNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
H +Q + A D V+V+ KG+V GS L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNI--INT 1291
AL IN IE ++G +G GKS+ L L R L P G++L+DG +I +
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1351
V LR R +V Q P F S+ DN+ +K L++ V++ ++ L V
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-VEKSLKGAALWDEV 136
Query: 1352 KE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
K+ S + S GQ+Q +C+ARAL +VL +DE T+ +D + ++ I K
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196
Query: 1408 TVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLL 1443
T++ + H RIS D+ +G +VE G+ L
Sbjct: 197 TIVIVTHNMQQASRIS-----DKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 7e-16
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 39/218 (17%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1296
L + ++ G V IVG +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 1297 RGR--------FAVVP--------QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
R R F ++P P G + + K
Sbjct: 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD----------------SRAGAKA 129
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA---SILQ 1397
+EAVGL + S G++Q + LARA VL DE T N+D T + L
Sbjct: 130 LLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVE 1435
A++ E +G T++ + H D L L G LVE
Sbjct: 190 FALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 7e-16
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1276
++E +++++ Y A++DI+ IE ++G +G GKS+ L ++ R+ +
Sbjct: 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1277 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+IL +GLNI+ N V +LR +V Q P F S+ +N+ + SVL+
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1335 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ V+E + L VK S +S S GQ+Q +C+AR L VL LDE + +D
Sbjct: 139 EI-VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ + ++ I+ + ++I + H + L + D +G LVE
Sbjct: 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 7e-16
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 64/270 (23%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL------------ 1270
IE +N+T ++ L +I+FTIE G +GI+GR+GAGKS +++ L
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1271 --FRLT------------------PICGGQ---ILVDGLNIINTPVRDLRGRFAVVPQSP 1307
+ + P+CGG VD N+ + R +R R A++ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1308 FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------------VKEEVEAVGLETFVKESG 1355
F G DD + +VLE + +E V L +
Sbjct: 119 FALYG------------DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA 1413
S G++Q + LAR L K + DE T +D QTA ++ NA+ K G++++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 1414 HRISTVLNM-DEILILDHGHLVEQGNPQTL 1442
H + ++ D+ + L++G + E+G P +
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 8e-16
Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 58/257 (22%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1278
++E +N+++R + L D++ T+ G V I+G GAGKS++L AL G
Sbjct: 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL------SGE 51
Query: 1279 -----GQILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLK 1328
G++ ++G + + +L R AV+PQ PF E + P
Sbjct: 52 LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP-------- 103
Query: 1329 IWSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALL------KSSKV 1378
+ V A V L S G++Q + LAR L +
Sbjct: 104 -HGLSRA-EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161
Query: 1379 LCLDECTANVDAQ----TASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILD 1429
L LDE T+ +D + + G+ VI + H LN+ D I++L
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHER--GLAVIVVLHD----LNLAARYADRIVLLH 215
Query: 1430 HGHLVEQGNPQTLLQDE 1446
G LV G P +L E
Sbjct: 216 QGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 9e-16
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGS--- 673
E+ L V+L + G VA++G GSGKS+LLN +LG + T G + +G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLT 70
Query: 674 --------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 715
I +V Q +P T+ +N+ P +
Sbjct: 71 KLSEKELAKLRRKKIGFVFQNFNLLP---DLTVLENVEL-----PLLIAGKSAGRRKRAA 122
Query: 716 ISL--MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
L ++G + + +K LSGGQ+ R+A+ARA+ + I + D+ +D++ A+ +L
Sbjct: 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182
Query: 774 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
KT I+ TH+ + AD V+ + G++
Sbjct: 183 ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 9e-16
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 1255 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL 1314
++G +G GK+++L L G I++DG ++ N P LR +V QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRH-INMVFQSYALFP--- 55
Query: 1315 RDNLDPFHMNDD------LKIWSVLE---KCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365
HM + LK+ V K V E + V LE F S GQ+Q
Sbjct: 56 -------HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQR 108
Query: 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM- 1422
+ LARAL+ K+L LDE + +D + +Q + + E G+T + + H + M
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1423 DEILILDHGHLVEQGNPQTLLQDECSVFSS 1452
D I I+ G + + G P+ + ++ ++F +
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVA 198
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-15
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 35/233 (15%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPV 1293
A+ I+F IE G + +VG +G+GKS ++ L P G IL DG +++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1294 RDLRG----RFAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEA 1344
R LRG + ++ Q P +L+P H + + L++ L + +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 1345 ----VGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1393
VG+ E + S GQRQ + +A AL +L DE T +D AQ
Sbjct: 138 LLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+L+ + +E GM ++ I H + V D + ++ HG +VE G +TL
Sbjct: 198 DLLKE-LQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
L +S + KG V +IG G+GKS+LL I G T G + +G +A L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP----LIELG 97
Query: 686 G------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
T R+NI + E + ++ + + GD +I + S G
Sbjct: 98 AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAEL--GD--FIDQPVKTYSSGMY 153
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAI- 797
ARLA + A + DI +LD+VL+ DA + + + KT +L +H++ AI
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQE--KCLERLNELVEKNKTIVLVSHDLGAIK 211
Query: 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828
D + ++ GQ++ GS + + Y
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEE-VIPAYEED 241
|
Length = 249 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+LN +SL + G +A+ G G GKS+LL + + T G++ G
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 674 -IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
++Y Q P + T+ DN++F + D + + L L I
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP-----------DSI 126
Query: 728 GEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
K + LSGG++ R+AL R + I +LD++ SA+D R I ++ ++ ++
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI--EEMIHRYVREQN 184
Query: 787 R--ILCTHN-VQAISAADMVVVMDKG 809
+ TH+ QAI AD V+ + G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E N+ + Y S L ++ + G ++GR G GK+++L L L P+ G I +
Sbjct: 2 EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1284 DGLNIINTP----VRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
DG +I P R G A VPQ P L ++ +NL + L
Sbjct: 60 DGEDITKLPPHERAR--AG-IAYVPQGREIFPRL---TVEENLL-----------TGLAA 102
Query: 1336 C-----HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1385
+ +E+ + L+ + G S GQ+Q + +ARAL+ K+L LDE T
Sbjct: 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
Query: 1386 -ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
++ ++ + +E GM ++ + + + D +++ G +V G L
Sbjct: 163 QPSIIKDIGRVI-RRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
Query: 1444 QDE 1446
+D+
Sbjct: 221 EDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
E+ L VSL + KG VA++G GSGKS+LLN + G T G + G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70
Query: 673 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I +V Q +L T +N+ P + K + L+
Sbjct: 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKKERRERAEELL 125
Query: 720 --VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
VG GD Y E LSGGQ+ R+A+ARA+ + I + D+ +D++ + ++
Sbjct: 126 ERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
Query: 775 -----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
N G T ++ TH+ + AD ++ + G++
Sbjct: 182 LLRELNKEAG-----TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 38/227 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
V+L+ V L +P+G ++A++G GSGKS+LL ILG + G I G
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLM----VG 721
+ + Q + S T+ +N+ F + + E+L ++ LM VG
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR-----ELVLMKLELVG 133
Query: 722 --GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
G A Y E LSGG R R+ALARA+ ++ LD+ S +D A I
Sbjct: 134 LRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189
Query: 778 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 823
L T I+ TH++ ++ + AD V V+ G+V G+ +L S
Sbjct: 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ +SL + G LVA++G G+GKS+LL I G G I +G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 674 ---IAYVPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA- 725
+ +V Q + T+ DNI FG + P + L + L+ +A
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL---LRLVQLEGLAD 132
Query: 726 -YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA----RWILSNAIMGP 780
Y + LSGGQR R+ALARA+ + +LD+ A+DA+V RW+
Sbjct: 133 RYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH---- 184
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
L T + TH+ +A+ AD VVV+++G+++ +G +
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
+ T G IVG +G+GKS++LN A F TP G++L++G+++ P D
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETP-QSGRVLINGVDVTAAPPADR--- 70
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1354
P S E +L +L ++ LK+ + + ++ + VGL K
Sbjct: 71 ----PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-AIEVALARVGLAGLEKRL 125
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITI 1412
S G+RQ + LAR L++ VL LDE A +D + + + + MTV+ +
Sbjct: 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 1413 AHRISTVLNMDEILI-LDHGHLVEQG 1437
H+ + + ++ LD+G + QG
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 4e-15
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+L VSL +P+G +VA++G G+GK++LL +I+G + GSI G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 674 --IAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY--- 726
I YVP+ I T+ +N+L G L + Y
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---------------ERVYELF 119
Query: 727 ------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ LSGG++ LA+ARA+ + +LD+ S A + AI
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-PSEGLAPKIVEEIFEAIREL 178
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
T +L N A+ AD V+++G+V G++A+L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 7/226 (3%)
Query: 1222 LIEFQNVTMRYKPSLPA-ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
+IE +N+T +YK L+D++F ++ G + I+G G+GKS+ + + L GQ
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1338
I++DG + V D+R + +V Q+P F G+ ++ F + N + + E+ V
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--V 121
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
E +E VG++ F + S GQ+Q + +A A+ K++ LDE T+ +D + L
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 1399 AISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1442
I + MTVI+I H + V D +L++ +G + P+ L
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 4e-15
Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 30/237 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1296
AL++++ + G G++G +GAGKS+++ + L G ++VDG ++ +L
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 1297 -RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCH--VKEEVEAVGLETFV 1351
R + ++ Q L ++ N+ P +++ K ++ V E + VGL
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-----DEIKRKVTELLALVGLGDKH 134
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMT 1408
+ S GQ+Q + +ARAL + KVL DE T+ +D A T SIL+ I+ G+T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLT 193
Query: 1409 VITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQTLLQDECSVFSSFVRAS 1457
++ I H + V + D + ++ +G L+EQG +P+T L + F+R++
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQK------FIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E +N+T + A+ D++ TI G ++G +G GKS++L L GQI
Sbjct: 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 1282 LVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
++DG+++ + P R + F QS LF + F + D K+ V
Sbjct: 77 MLDGVDLSHVPPYQRPINMMF----QSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVN 131
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E + V ++ F K S GQRQ + LAR+L K K+L LDE +D + +Q
Sbjct: 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 1400 ISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSS 1452
+ E G+T + + H + M I I++ G V+ G P+ + + + +S+
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +N++ RY ++ ++ +++ G VG++G GAGK++ + L G+IL
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCH 1337
+DG +I P+ R R + +PQ +F ++ +N+ K EK
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EK-- 113
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
++E +E + K S S G+R+ + +ARAL + K L LDE A VD +Q
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 1398 NAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
I + +G+ V+ H + L++ D I+ G ++ +G P+ + +E
Sbjct: 174 KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 5e-15
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ V+ Y A ++ ++FT+ G G++G GAGKS+I + +T G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1341
V G+ + R R R VVPQ DNLD F + ++L ++ + E
Sbjct: 100 VLGVP-VPARARLARARIGVVPQF---------DNLDLEFTVRENLLVFGRYFGMSTR-E 148
Query: 1342 VEAV--------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+EAV LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1394 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1449
++ + S +G T++ H + + D + +L+ G + +G P L+ + C V
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQV 268
|
Length = 340 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NVT R+ AL DI+F++E G G++G GAGK++ + + + G++L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1283 VDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
DG P+ R R +P+ L+ + D L LK + + E
Sbjct: 59 FDG-----KPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR--IDE 111
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+E + L + + S G +Q + A++ ++L LDE + +D +L++ I
Sbjct: 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171
Query: 1401 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
G TVI H++ V + D +L+L+ G V G
Sbjct: 172 RELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-15
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 41/222 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI----------- 674
VLN +SL +P G +VA++G GSGK++LL I G L H SG I
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG---LEH---QTSGHIRFHGTDVSRLH 70
Query: 675 AYVPQVPWILSG-------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDMAY 726
A +V ++ T+ DNI FG P+ A V L MV +A+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV--QLAH 128
Query: 727 IGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMG 779
+ ++ LSGGQ+ R+ALARA+ I +LD+ A+DAQV RW+ L
Sbjct: 129 LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--- 185
Query: 780 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L+ T + TH+ + A+ AD VVVM +G ++ G+ +
Sbjct: 186 ---LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
LH ++ T G G++G G+GKS++L L R P G+IL+D + + + +
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86
Query: 1300 FAVVPQSPFLFEG-SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1354
A +PQ EG ++R+ + P+H L + ++ V+E + VGL+
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWH--GALGRFGAADREKVEEAISLVGLKPLAHRL 144
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMTVIT 1411
S S G+RQ +A + + S+ L LDE T+ +D A +L + +S E +G+TVI
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIA 203
Query: 1412 IAHRISTVLNM-----DEILILDHGHLVEQGNPQTLLQDE 1446
+ H I NM D ++ L G ++ QG P L++ E
Sbjct: 204 VLHDI----NMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
++ V+L + +G + +IG GSGK++ L I + T G I G
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 673 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I YV Q P + T+ +NI +D + + + +VG D +
Sbjct: 76 KIGYVIQQIGLFPHL---TVAENIATVPKLLGWDKERIKKRADE------LLDLVGLDPS 126
Query: 726 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-ML 783
++ + LSGGQ+ R+ +ARA+ I ++D+ A+D + R L I L
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQKEL 185
Query: 784 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
KT + TH++ A+ AD + VMD G++ + ++
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
|
Length = 309 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP----Q 679
V L+ VSL + +G ++G G GK++LL I G T G I G I +P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 680 VPWILSG-------TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
V + T+ +NI FG K E + LD +V + Y
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALD-----LVQLE-GYANR 126
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
K LSGGQ+ R+A+ARA+ + + +LD+ L A+D ++ + + L T +
Sbjct: 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186
Query: 790 CTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
TH+ + A++ +D + VM+KG+++ IG+ ++
Sbjct: 187 VTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 11/226 (4%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1296
++D + I G I+G +G+GKS+ + L RL GQI +DG NI+ +L
Sbjct: 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 1297 --RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAVGLETFVKE 1353
R + +V Q LF L + +L W E K E ++ VGLE +
Sbjct: 68 VRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
S G +Q + LARAL +L +DE + +D +Q+ + T++
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1412 IAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVR 1455
I H + + + D I+I+ G +V+ G P +L++ + + F+
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 9e-15
Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 78/278 (28%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1280
+I +N+++ Y L +++ T+ G ++G+VGR GAGKS++L L L P G
Sbjct: 3 MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH-- 1337
GL R + Q P L ++ D + + ++ +L +
Sbjct: 61 TRPKGL------------RVGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEA 104
Query: 1338 ------------------------------VKEEVEAVGLETFVKESGISFSVGQRQLIC 1367
+E + +G + S S G R+ +
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVA 163
Query: 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH------RISTVLN 1421
LARALL+ +L LDE T ++D ++ L++ + TVI ++H ++T
Sbjct: 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG--TVIVVSHDRYFLDNVAT--- 218
Query: 1422 MDEILILDHGHLVE-QGNPQTLLQDECSVFSSFVRAST 1458
IL LD G L +GN +SS++
Sbjct: 219 --HILELDRGKLTPYKGN-----------YSSYLEQKA 243
|
Length = 530 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+N L VS + +G VA++G GSGKS++ + G + G I
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78
Query: 669 -HASGSIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGG 722
I + Q P + T+ D+I FG K P+ + + V +
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME----- 133
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
Y+ ++ NLSGGQ+ R+A+A + +I + D+ S +D + R I IM
Sbjct: 134 --DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK--IM--VD 187
Query: 783 LQKTR----ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
L+KTR I TH++ AD V+V +G++ G ++
Sbjct: 188 LRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I NV R+ + A L DI+ I+ G V ++G +GAGKS++L + L G+I
Sbjct: 3 IRINNVKKRF-GAFGA-LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1283 VDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKI-WSV 1332
++G ++ N VRD R + V Q LF HM D+ LK+
Sbjct: 61 LNGRVLFDVSNLAVRD-R-KVGFVFQHYALF----------PHMTVADNIAFGLKVRKER 108
Query: 1333 LE----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ V+E + V LE S GQRQ + LARAL KVL LDE +
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1389 DAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
DA+ L+ + + G+T + + H L + D +++L+ G + + G P
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 29/243 (11%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1280
+I +N++ L ++ + G + I+G GAGKS++L AL L+P G+
Sbjct: 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGE 57
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
+ ++G+ + + P +L AV+PQ+ PF + ++ P + ++
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE----PEEDE 113
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------SSKVLCLDECTANVD 1389
+ + A L + S G++Q + LAR L + S + L LDE T+ +D
Sbjct: 114 RIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 1390 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLL 1443
A L+ A +G V+ + H LN+ D I++L G ++ G+PQ +L
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHD----LNLAAQYADRIVLLHQGRVIASGSPQDVL 229
Query: 1444 QDE 1446
DE
Sbjct: 230 TDE 232
|
Length = 259 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 28/222 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
++D + +E G I+G +G+GKS+++ L RL G+ILVDG +I +LR
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 1299 ----RFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV-LEKCHVK--EEVEAV 1345
+ ++V QS L P H ++ L++ V + + E +E V
Sbjct: 103 LRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPKAEREERALEALELV 152
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISS 1402
GLE + + S G +Q + LARAL +L +DE + +D + +Q+ + +
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+ K T++ I H + L + D I I+ G +V+ G P+ +L
Sbjct: 213 KLK-KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTPVR 1294
L +N I T ++G +G+GKS++L RL G++ +DG +I V
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 1295 DLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1352
+LR R +V Q P S+ +N+ +N +K L++ V+ +E L VK
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDEVK 137
Query: 1353 ES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
+ S GQ+Q +C+ARAL +VL DE TAN+D + + +++ K MT
Sbjct: 138 DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMT 197
Query: 1409 VITIAH------RISTVLNMDEILILDHGHLVEQG 1437
++ + H RIS D + L G +VE G
Sbjct: 198 IVLVTHFPQQAARIS-----DYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
L +SL +PKG + A+IG G GKS+LL +L + G +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 677 ------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
V Q P G+I DN+ +G E L V+ +L
Sbjct: 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE---RVEEAL----RK 126
Query: 725 AYIGE------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
A + + + LSGGQ+ RL LARA+ + ++ +LD+ SA+D ++ + I
Sbjct: 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIA 185
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
+ T ++ THN+ QA AD + G++
Sbjct: 186 ELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1234 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGGQILVDG--LNI 1288
P P L +NF E G + ++G GAGKS++ LN L R G +L+DG L+
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDY 58
Query: 1289 INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1346
+ + R R +V Q P LF + ++ +N L V + V+E + AVG
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR--VREALTAVG 116
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISS 1402
+ S G+++ + +A A+ VL LDE TA +D Q +IL+ +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1403 ECKGMTVITIAHRI 1416
GMTV+ H +
Sbjct: 177 ---GMTVVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 21/222 (9%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL------NIINT 1291
A L DI I + GI+G +G+GKS++L L RL I +I VDG +I
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 1292 PVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1346
LR +V Q P F S+ DN L + + +I ++E+C + VG
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC-----LRKVG 138
Query: 1347 LETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
L V + S GQ+Q + +ARAL KVL +DE T+ +D + ++ I+
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+ ++ ++H V + D + L +G LVE G+ +
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 2e-14
Identities = 103/516 (19%), Positives = 182/516 (35%), Gaps = 40/516 (7%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
F LC+ + + A+ + + L KI+ AP+ D+ ++
Sbjct: 57 FSFGGLCLLALLFR---IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLI 113
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059
+ D+ I+ L I +A + IA L+Y+ V + + I + Q
Sbjct: 114 PLLTHDIDQINAFLFIFPPIAIALAIFFFCIAY-LAYLSVPMFAITISAIIIGTAAQLLA 172
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIR--AFKSEDYFMAKFKEHVVLYQRTSYS 1117
+ G+ ++ + + +E
Sbjct: 173 FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232
Query: 1118 ELTASLWLSLRL---QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1174
E+ L QLL +I A + + + A S V L P+
Sbjct: 233 EI---LIFIAAENFGQLLFFLLIGCALFAAAMFASID-AAAIS--AFVLALLYIKGPLEM 286
Query: 1175 LLGNFLSSFTETEKEMVSLERVLEY---MDVPQEELC-----GYQSLSPDWPFQGLIEFQ 1226
L+ S+ + ++ +R+ ++ + P+ EL L+ D IE +
Sbjct: 287 LV----SALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV-DSIELK 341
Query: 1227 NVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
+V M K S AL I+ I G V IVG G GKS++ L G+IL+
Sbjct: 342 DVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW-SVLEKCHVKEEV 1342
DG + D R F+ + LF+ + + D+ + + LE K ++
Sbjct: 402 DGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKI 460
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
E G T + S GQ++ + L A L+ +L DE A+ D +
Sbjct: 461 EDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1403 ECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436
+ K G T+I I+H D+I+ L G +V+
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 68/249 (27%), Positives = 100/249 (40%), Gaps = 26/249 (10%)
Query: 1213 LSPDWPF----QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1268
LS ++P GL N K A+ DI+F I G VG +G GAGKS+ L
Sbjct: 9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68
Query: 1269 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF---EGSLRDN--LDPFHM 1323
L L G++ V+G + P R R + + D LD +
Sbjct: 69 MLTGLLLPTSGKVRVNGKD----PFRR---REEYLRSIGLVMGQKLQLWWDLPALDSLEV 121
Query: 1324 NDDLKIWSVLEKCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379
I+ + + E E + LE F+K S+GQR LA ALL KVL
Sbjct: 122 LK--LIYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 1380 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1436
LDE T +D + ++ + + TV+ H + + D +L++D G LV
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238
Query: 1437 GNPQTLLQD 1445
G L +
Sbjct: 239 GTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RDLRGR 1299
D++ T+ G VG++G GAGK++ + + P G I++D +I P+ R RG
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG- 79
Query: 1300 FAVVPQSPFLFEG-SLRDNLDP-FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
+PQ +F S+ DNL + DDL + + E +E +E G S
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLS--AEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRI 1416
S G+R+ + +ARAL + K + LDE A VD + ++ I G+ V+ H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 1417 STVLNMDE-ILILDHGHLVEQGNPQTLLQDE 1446
L + E I+ GHL+ G P +LQDE
Sbjct: 198 RETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 21/215 (9%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNII--NTP 1292
L ++N I + ++G +G GKS+ + L R+ + G I +DG++I
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1348
V +LR + +V Q P F S+ DN L +D+ I V+E ++A L
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER-----VEESLKAAALW 133
Query: 1349 TFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
VK+ S + S GQ+Q +C+AR + S +V+ +DE + +D + + +++ I
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193
Query: 1405 KGMTVITIAHRISTVLNMDEIL-ILDHGHLVEQGN 1438
+ T++ + H + + + +G ++E G
Sbjct: 194 EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228
|
Length = 250 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-14
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+LN +S +P G VA++GE G+GKS++L + + GSI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYI 727
+I VPQ + + TI NI +G+ + E A D SL G D +
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTG-V 393
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQK 785
GE+G+ LSGG++ R+A+AR + I +LD+ SA+D + I + +
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR---- 449
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
T ++ H + I AD ++V+D G++ G+ +L A LY+ W
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496
|
Length = 497 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1286
N++ YK L D++ + G + + G+ GAGK+++ L L G IL++G
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 1287 NIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1344
I ++ R V Q LF S+R+ L D E+ E
Sbjct: 63 PI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG----------NEQAET 109
Query: 1345 V----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
V L + +S S GQ+Q + +A ALL +L DE T+ +D + + I
Sbjct: 110 VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 1401 SSECK-GMTVITIAH 1414
G VI I H
Sbjct: 170 RELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-14
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--------------LGEMMLTHGSIH 669
N VL+ +SL + G L+A+IG+ G GK++LL +I + + LTH H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 670 ASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
G + DN+ FG ++ + + + + GD A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL--GDAAA--H 133
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LSGG + R+A+ARA+ D+ +LD+ LSA+DA + + L + IL
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 790 C-THN-VQAISAADMVVVMDKGQVKWIGSSADL 820
C TH+ A++ AD +M G++ G L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 1222 LIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
L+E +N+ T RY+ L A+ ++FT+ G + I+G G+GKS++ L +
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 1275 PICGGQILVDG--LNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLK 1328
G+IL++ L+ + R R R + P L G + D P +N DL+
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLE 121
Query: 1329 IWSVLEKCHVKEEVEAVGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
++ + E + VGL + GQ+Q + LARAL+ K++ DE
Sbjct: 122 PEQRRKQ--IFETLRMVGLLPDHANYYPH--MLAPGQKQRVALARALILRPKIIIADEAL 177
Query: 1386 ANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1442
A++D S L N + E +G++ I + I + ++ D++L++ G +VE+G+ +
Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
Query: 1443 LQD 1445
L
Sbjct: 238 LAS 240
|
Length = 267 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG 1278
++ +N+ + Y AL+DI +I ++G +G GKS++L R L P C
Sbjct: 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1279 --GQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNL--DP-FH-MNDDLKIW 1330
G IL +G NI+++ V LR + +V Q P F S+ +N+ P H + +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+++EK +K ++ + +S +S S GQ+Q +C+AR L + +V+ +DE + +D
Sbjct: 124 TIVEKS-LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH-GHLVEQGNPQTLLQD 1445
+ +++ I K TVI + H + + + + G L+E + ++
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 685
L + G +VA++G G+GKS+LLN I G + GSI +G Y V +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 686 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 734
T+R NI G + LK VD + VG Y+ L
Sbjct: 78 ENNLFAHLTVRQNIGLGLH-------PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQL 129
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
SGGQR R+ALAR + + I +LD+ SA+D + +L+ Q+T ++ TH++
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 795 Q-AISAADMVVVMDKGQVKWIG 815
A + A + V+ +G++K +
Sbjct: 190 SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILV 1283
F N ++ P L +I+F +E G + + G TG+GKSS+L + L P G+I
Sbjct: 431 FSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKI-- 483
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
GR + PQ+ ++ G+++DN+ D+ + SV++ C ++E++
Sbjct: 484 -----------KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532
Query: 1344 AVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAI 1400
+ T + E GI+ S GQR I LARA+ K + + LD ++D T I ++ +
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
Query: 1401 SSECKGM---TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452
CK M T I + ++ + D+IL+L G G LQ + FSS
Sbjct: 593 ---CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSS 643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 4e-14
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI-----LVDGLNIINTP 1292
A L +IN I G IVG+ G GKSS+L A+ G++ + T
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GL 1347
R+ R A Q P+L ++ +N+ PF+ + +V + C ++ +++ + G
Sbjct: 75 SRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ---RYKAVTDACSLQPDIDLLPFGD 130
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISS--EC 1404
+T + E GI+ S GQRQ IC+ARAL +++ ++ LD+ + +D + ++Q I +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1405 KGMTVITIAHRISTVLNMDEILILDHG 1431
T++ + H++ + + D I+ + G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L VSL + +G +VA++G G+GK++LL +I+G + G I G
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 673 -SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDM----- 724
IAYVP+ I T+ +N+L G + E D++ ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE------RDLEEVY----ELFPRLK 127
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAIMGP 780
++ LSGG++ LA+ARA+ + +LD+ L+ + ++ I
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-------- 179
Query: 781 HMLQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLA 821
L+K T +L N + A+ AD V++ G++ G++A+L
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-14
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RD 1295
AL DI+ +++ G V ++G +G GK+++L + L G I G +I P RD
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 1296 LRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
+ +V QS LF ++ DN L M V E+ V E ++ VGL
Sbjct: 78 ----YGIVFQSYALFPNLTVADNIAYGLKNRGMGRA----EVAER--VAELLDLVGLPGS 127
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1408
++ S GQ+Q + LARAL S +L LDE + +DA+ L+ I + G+T
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 1409 VITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1454
I + H L+M D I++++HG + + G PQ + + + F + FV
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFV 235
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 4e-14
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 22/244 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICG-- 1278
+IE +N + Y A+ ++ I I+G +G GK+++L ++ R+ I G
Sbjct: 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1279 --GQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+I G +I + V + R + +V Q P F S+ DN+ +K L+
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1335 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ V+E ++ L VK + G S GQ+Q +C+ARAL +V+ LDE T+ +D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQTL 1442
++ + + T++ + H I + + D I + G L+E G P+
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNK 239
Query: 1443 LQDE 1446
L +E
Sbjct: 240 LTEE 243
|
Length = 250 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 27/229 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L+D++ ++ G ++G G GKS++L RL G + + I R L R
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 1300 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVKESG 1355
A++PQ EG ++R+ L + + L +W L + V + +E +
Sbjct: 78 LALLPQHHLTPEGITVRE-LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL 136
Query: 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ--NAISSECKGMTV 1409
S GQRQ LA L + + V+ LDE T +D + +++ N +G TV
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-----QGKTV 191
Query: 1410 ITIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLLQDE--CSVFS 1451
+T+ H LN D +++L +GH++ QG P+ ++ +VF
Sbjct: 192 VTVLHD----LNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD 236
|
Length = 255 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 48/221 (21%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
E + L VS +P+G + +IG G+GKS+LL + G G++ G ++ +
Sbjct: 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL 88
Query: 678 --------PQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGG 722
P+ L+G R+NI + + E ++ L G
Sbjct: 89 LGLGGGFNPE----LTG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSEL---------G 133
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSN 775
D +I S G +ARLA A A DI ++D+VL+ DA + R +L
Sbjct: 134 D--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 776 AIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIG 815
KT IL +H+ +I D +V++KG++++ G
Sbjct: 192 G--------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA-SGSIAYVPQ-- 679
+ VLNQ+ L +P G VAV+G G GKS+LL + G + G + A + +A +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT 83
Query: 680 ---------VPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+PW + DN+ G + + + L A L D A
Sbjct: 84 RLMFQDARLLPW---KKVIDNVGLGLKGQWRDAAL-QALAAVGL---------ADRA--N 128
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 785
E LSGGQ+ R+ALARA+ H + +LD+ L A+DA + R + + I + Q+
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-LTRIEMQDLIES--LWQQHGF 185
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSL 824
T +L TH+V +A++ AD V+++++G++ DL V L
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI-----GLDLTVDL 220
|
Length = 257 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-14
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWI 683
G VA++G G+GKS+L+N + G I G +IA V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 684 LSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ +I DNI G+ P + E + +A D I G +GE+G LSGG+
Sbjct: 421 FNRSIEDNIRVGR---PDATDEEMRAAAERAQAHDF-IERKPDGYDTVVGERGRQLSGGE 476
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
R RLA+ARA+ I +LD+ SA+D + + A + M +T + H + +
Sbjct: 477 RQRLAIARALLKDPPILILDEATSALDVETEAKV--KAALDELMKGRTTFIIAHRLSTVR 534
Query: 799 AADMVVVMDKGQVKWIGSSADLA 821
AD ++V D G+V GS +L
Sbjct: 535 NADRILVFDNGRVVESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+F+NV RY L + ++F ++ G G++G GAGK++ L L LT G I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSV---LEKCHV 1338
+ G + + R R R VVPQ DNLDP F + ++L ++ L
Sbjct: 66 LCG-EPVPSRARHARQRVGVVPQF---------DNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 1339 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ V E LE S G ++ + LARAL+ VL LDE T +D Q
Sbjct: 116 RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1449
++ + S +G T++ H + + D + +++ G + +G P L++ E C V
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDV 234
|
Length = 306 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284
F N+ + P L +IN IE G + I G TG+GK+S+L + G+I
Sbjct: 42 FSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--- 94
Query: 1285 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1344
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 95 ----------KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144
Query: 1345 VGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1401
+ T + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV- 203
Query: 1402 SECKGM---TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452
CK M T I + ++ + D+ILIL G G LQ FSS
Sbjct: 204 --CKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFSS 254
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 60/243 (24%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
+ + + VS + G ++ ++GE GSGKS+L +++G +L G SG
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG--LLPEGGRITSGEVILDGR 75
Query: 674 -----------------IAYVPQVPWIL---SGTIRDNI-----LFGKNYDPQSYSETLK 708
IA + Q P TI D I L GK ++ ++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVN------LSGGQRARLALARAVYHGSDIYMLDDVLS 762
L+ VG + + LSGG R R+ +A A+ + + D+ +
Sbjct: 136 L--LE-----QVG-----LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 763 AVDAQVARWILSNAIMGPHMLQKTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817
A+D IL + + LQ+ + TH++ ++ AD VVVM KG++ G +
Sbjct: 184 ALDVTTQAQIL-DLLKD---LQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 818 ADL 820
++
Sbjct: 240 EEI 242
|
Length = 539 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
L VSL + G VA+IG G+GKS+LL + G + T GS+ G+
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 674 ----IAYVPQ-VPWILSGTIRDNILFGK------------NYDPQSYSETLKACTL--DV 714
I + Q I ++ +N+L G+ + + E +A V
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRALAALERV 132
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
+ D AY + LSGGQ+ R+A+ARA+ + + D+ ++++D S
Sbjct: 133 GLL-----DKAYQ--RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP-----ASS 180
Query: 775 NAIMG-----PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+M T I+ H V A AD +V + G++ + G A+L
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 9e-14
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
E N VL +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVG---G 722
+ +PQ +I SGT R KN DP + E + +V + ++ G
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFR------KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPG 126
Query: 723 DMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDV---LSAVDAQVARWILSNAIM 778
+ ++ G LS G + + LAR+V + I +LD+ L + QV R L A
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA 186
Query: 779 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
T IL H ++A+ +V+++ +V+
Sbjct: 187 DC-----TVILSEHRIEAMLECQRFLVIEENKVR 215
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 38/222 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
Q+ +L VSL +PKG + V+G G GK++LL +++G + + GSI G
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71
Query: 674 -----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 723
IAYVPQ I T+ +N+L G L + + + V +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTG--------LAALPRRSRKIPDEIYELFPVLKE 123
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
M +G +G +LSGGQ+ +LA+ARA+ + +LD+ + + + I I L
Sbjct: 124 M--LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIR---RL 177
Query: 784 QKTR----ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ +L + A AD VM++G+V G+ +L
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 30/240 (12%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ + Y AL DI G + ++G +GAGKSS+L L L G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1283 VDG--LNIINTP----VRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE- 1334
+ G + TP +RDLR +V Q L+ ++++NL + ++ + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL----IEAPCRVLGLSKD 116
Query: 1335 --KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--- 1389
++ ++ + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1390 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG------NPQT 1441
AQ SI++ + G+T + + H + ++ +++GH+VEQG PQT
Sbjct: 177 TAQIVSIIKELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQT 233
|
Length = 242 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 37/228 (16%)
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
L AL ++FT+E G + +VG +G GKS++ L + GG++ G +++
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83
Query: 1293 ---VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHMNDDLKIWSVLEKCHVKEEV 1342
+ LR + +V Q+P+ GSL L +P +N L S E+ +E+
Sbjct: 84 PEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTSL---SAAER---REKA 134
Query: 1343 EA----VGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1393
A VGL FS GQRQ I +ARAL+ V+ DE + +D AQ
Sbjct: 135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194
Query: 1394 SI---LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
++ LQ + G++ + I+H +S V ++ DE++++ G VE+G
Sbjct: 195 NLMMDLQQEL-----GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237
|
Length = 327 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVR 1294
+ D+N +++ G + +VG +G+GKS A+ L P G+IL+DG + P+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1295 DLRGR-FAVVPQSPFLFEGSLRDNLDPF-----HMNDDLKIWSVLEK---CHVKEEVEAV 1345
+RGR A + Q+P R +P H + L+ L K + E +EAV
Sbjct: 59 -IRGRHIATIMQNP-------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110
Query: 1346 GL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1401
GL E +K+ S G Q + +A ALL L DE T ++D A +L+
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1402 -SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
+ G ++ I H + V + DE+ ++D G +VE+G + +
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTPV 1293
ALH I+ E ++G +G GKS+ L L R+ G+I +G NI + +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1294 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE------AV 1345
+LR +V Q P F S+ DN+ LKI V +K + + VE A+
Sbjct: 79 DLVELRKEVGMVFQQPTPFPFSVYDNV-----AYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 1346 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
ET + + +FS GQ+Q IC+ARAL KV+ LDE T+ +D ++S ++ +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
T I + H + + D+ L +G L+E G
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIINTP- 1292
A+ I+ E ++G +G+GKS+ L +L R+ I GQIL G++I N
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI-NRKE 93
Query: 1293 --VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
V ++R +V Q P F S+ +N+ +K VL++ V+ ++ L
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQ 152
Query: 1351 VKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1406
VK+ S ++ S GQ+Q +C+ARA+ +L +DE + +D + L+ + K
Sbjct: 153 VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
Query: 1407 MTVITIAH------RISTVLNMDEILILDHGHLVE 1435
T+I + H R S D G L+E
Sbjct: 213 YTIIIVTHNMQQAARAS-----DYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 1223 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I+ +N+ + LP AL +++ I G + I+G+TG+GK++ LNAL L P
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPD 60
Query: 1277 CG-----------------GQILVDGLNIINTPVR------DLRGRFAVVPQSPF----L 1309
G + +++ L I T + ++R R VV Q F L
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ--FAEYQL 118
Query: 1310 FEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLI 1366
FE ++ ++ P M + ++ + +E VGL E++++ S S GQ++ +
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKE--EAKKR--AAKYIELVGLDESYLQRSPFELSGGQKRRV 174
Query: 1367 CLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDE- 1424
LA L L DE TA +D Q IL+ + +G T+I + H + VL +
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234
Query: 1425 ILILDHGHLVEQGNPQTLLQDE 1446
+ G +++ G+ +L D
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+ L V+L + +G +VA+IG G+GKS+LL S+ G + T G I +G
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 674 -------IAYVPQVP-WILSGTIRDNILFGK-NYDP--QS----YSETLKACTLD----V 714
I + Q + ++ +N+L G+ Y +S +S+ KA LD V
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
I D AY + LSGGQ+ R+A+ARA+ I + D+ ++++D + A+ ++
Sbjct: 136 GIL-----DKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T I+ H V A AD ++ + G++ + G +++L
Sbjct: 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ +L+ +SL L G ++A+ G+ G+GK++L + G + + GSI +G
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER 69
Query: 673 --SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
SI YV Q + + ++R+ +L G L D+
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL--KELDAGNEQAETVLK---------DLDLYA 118
Query: 729 EKGVN---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPH 781
K + LSGGQ+ RLA+A A+ G D+ + D+ S +D +V I A G
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-- 176
Query: 782 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812
K I+ TH+ + ++ D V+++ G +
Sbjct: 177 ---KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1280
+ V Y+ LP + + G V I+G +GAGKS++LN A F + P G
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPA-SGS 54
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
I V+ + + +++ Q LF ++R N+ ++ LK+ + ++ V
Sbjct: 55 IKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVV 110
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + VG+ ++ S GQRQ + LAR L++ + +L LDE + +D +
Sbjct: 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1400 ISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ C + T++ + H +S + +I ++ G +
Sbjct: 171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 13/231 (5%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +++ RYK AL ++ +I G++ ++G GAGKS++L L + G++
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
V G + + +R + +V Q P +F ++ D++ +N L V + V+E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEE 121
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASIL 1396
++AV + F + S GQ++ + +A L V+ LDE A +D IL
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 1397 QNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446
+ + ++ G TVI H + D++++L G ++ +G+ L ++
Sbjct: 182 -DRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1293
L +N TI+ G ++G G+GKS++ + + +T G+IL G +I + P
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72
Query: 1294 -RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1352
R G F + Q P E+ V F++
Sbjct: 73 ERARLGIF-LAFQYP--------------------------------PEIPGVKNADFLR 99
Query: 1353 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS---SECKGMTV 1409
FS G+++ + + LL + LDE + +D ++ I+ E K + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1410 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1447
IT R+ + D + +L G +V+ G+ + L+ E
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1277
+E +N+ + Y AL DI+ I +G +G GKS++L R L C
Sbjct: 26 LEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 1278 GGQILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+I +DG NI D LR R +V Q P F S+ +N+ L++ +
Sbjct: 84 EGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNPFPKSIYENV-----VYGLRLQGINN 137
Query: 1335 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
+ + E VE L VK E+ S GQ+Q + +ARA+ +VL LDE T+
Sbjct: 138 RRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQ 1440
+D + ++ I+ T++ + H R+S D + G LVE G+
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDTD 252
Query: 1441 TL 1442
TL
Sbjct: 253 TL 254
|
Length = 272 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1278
+E +N+ + Y AL+DIN I ++G +G GKS+ L L R+ +
Sbjct: 5 MESKNLNLWY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 1279 -GQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI--- 1329
G++L+DG NI + V +LR R +V Q P F S+ DN+ H D K
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 1330 ---WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
W+ L+K + +EV+ +K+S + S GQ+Q +C+AR + V+ +DE T+
Sbjct: 123 IVEWA-LKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRI 1416
+D + +++ + K T++ + H +
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
L VSL +PKG + +IG G+GKS+L+ I G T GS+ G
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 673 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 720
I + Q +LS T+ +N+ K + E L+ +V
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE----------LV 128
Query: 721 G----GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 774
G D AY LSGGQ+ R+ +ARA+ + + + D+ SA+D + + IL+
Sbjct: 129 GLEDKAD-AYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 775 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
N +G T +L TH ++ + D V VM+KG+V G+ ++
Sbjct: 184 RDINRELGL-----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-13
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 21/219 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1296
+ +I+FT+ G +G+VG +G+GKS+ AL RL G+I DG + N R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 1297 -RGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKI-WSVLEKCHVKEEV----EAVGLET 1349
R R VV Q P SL L+ + + L++ L +++V E VGL+
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 1350 FVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSEC 1404
+ + FS GQRQ I +ARAL+ ++ LDE T+++D AQ ++L++ +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL--QQK 474
Query: 1405 KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1442
+ + I+H + V + ++++L G +VEQG+ + +
Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
Length = 529 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 679
L VSL + G LV V+G G GK++LLN I G + + GSI +G P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 680 ------VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+PW+ + DN+ FG + + E V + G + YI +
Sbjct: 80 FQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---GAEHKYIWQ- 132
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---------WILSNAIMGPH 781
LSGG R R+ +ARA+ + +LD+ A+DA W +
Sbjct: 133 ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG------ 183
Query: 782 MLQKTRILCTHNV-QAISAADMVVVMDKG 809
K +L TH++ +A+ A +VV+ G
Sbjct: 184 ---KQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTPV 1293
ALH ++ I G V ++G +G+GKS++L L L + ++L +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 1294 RDLRGRFAVVPQSPFLFEG-------SLRDNL-------DPFHMNDDLKIWSVLEKCHVK 1339
RD+R A + ++F+ S+ +N+ PF ++ +K
Sbjct: 79 RDIRKSRA---NTGYIFQQFNLVNRLSVLENVLIGALGSTPF-WRTCFSWFTREQKQRAL 134
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + VG+ F + + S GQ+Q + +ARAL++ +KV+ DE A++D ++A I+ +
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 1400 IS--SECKGMTVITIAHRISTVLNMDE-ILILDHGHLVEQGNPQ 1440
+ ++ G+TV+ H++ L E I+ L GH+ G+ Q
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238
|
Length = 262 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 1255 IVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIIN-TPVRDLRGRFAVVPQSPF 1308
++G TG+GK++ L L R+ + G G +L+ G +I N V + R R ++ Q P
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111
Query: 1309 LFEGSLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVG 1361
F S+ DN+ H K + + + + E VGL VK+ S S G
Sbjct: 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE----VGLWDAVKDRLSDSPFRLSGG 167
Query: 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1421
Q+QL+CLAR L + +VL LDE T+ +D T ++ I S +TVI + H ++
Sbjct: 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR 227
Query: 1422 M-DEILILDHGHLVEQGNPQTLL 1443
+ D + G LVE+G + L
Sbjct: 228 ISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 4e-13
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 24/239 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ V+ Y + ++D++FTI G G++G GAGKS+I L + G+I
Sbjct: 5 IDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1341
V G + + R R VVPQ DNLDP F + ++L ++ +E
Sbjct: 63 VLG-EPVPSRARLARVAIGVVPQF---------DNLDPEFTVRENLLVFGRYFGMSTREI 112
Query: 1342 VEAVG-------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 113 EAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1449
++ + S +G T++ H + + D + +L+ G + +G P L+ ++ C+V
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNV 231
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP---- 678
V++ + L + G + ++G G GK+++L I G G I G I +VP
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86
Query: 679 QVPWILSG-------TIRDNILFG--------KNYDPQSYSETLKACTLDVDISLMVGGD 723
V + T+ +N+ FG P+ E L+ L+ +
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLE---------E 136
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A K LSGGQ+ R+A+ARAV + + +LD+ LSA+D ++ R + N + L
Sbjct: 137 FA--QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL-RKQMQNEL---KAL 190
Query: 784 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS-------SADLAVSLYSGFWST 831
Q+ T + TH+ +A++ +D +VVM G+++ G+ +L V+ + G
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG--EI 248
Query: 832 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQ-----------EIIEVEQRK 880
N FD ++ + E R A+ ++ + V EI + E +
Sbjct: 249 NIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAE 308
Query: 881 E--GRVELTVYK 890
G V YK
Sbjct: 309 GLIGYVRERNYK 320
|
Length = 375 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 5e-13
Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 1222 LIEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
++E +N+ +Y K S L+ ++F+I G V I+G+ G+GKS+ + L G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1338
+ +DG + V +LR + +V Q+P F G+ ++ F M N + ++++ V
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--V 121
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
E + AV + F S GQ+Q + +A + +++ LDE T+ +D +
Sbjct: 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 1399 AISSECKG---MTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443
I E K +TV++I H + + D IL++ G ++++ P L
Sbjct: 182 VIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 29/241 (12%)
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
K ++D++ + G I+G +G+GKS++L + RL G++L+DG +I
Sbjct: 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 1293 VRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE------- 1341
++LR + ++V QS L P H + LE V
Sbjct: 93 RKELRELRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPRAEREERAA 142
Query: 1342 --VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN- 1398
+E VGLE + + S G +Q + LARAL +L +DE + +D +Q+
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 1399 --AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1454
+ +E T++ I H + L + D I I+ G LV+ G P+ +L + + + F
Sbjct: 203 LLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261
Query: 1455 R 1455
R
Sbjct: 262 R 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 40/247 (16%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG--- 1278
IE +N+ ++ LH I+ ++ G V I+G +G+GK+++L + L P G
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1279 -GQILVDG---LNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNL--DPFHMNDDLKIWS 1331
G I +D L+ +R LR V Q+ LF ++ +N+ P
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP----------- 110
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGIS---------FSVGQRQLICLARALLKSSKVLCLD 1382
V+ K KEE A E K G++ S GQ+Q + +ARAL +V+ D
Sbjct: 111 VIVKGEPKEEATARARELLAK-VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
Query: 1383 ECTANVDAQTASILQNAISS---ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
E T+ +D + + N I E + M ++T H +S ++ D + +D G +VEQG
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVT--HEMSFARDVADRAIFMDQGRIVEQGP 227
Query: 1439 PQTLLQD 1445
+ L D
Sbjct: 228 AKALFAD 234
|
Length = 250 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL +++F + G VG +G GAGKS+ + + P G + V G +++ P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1299 RFAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGL--ETFV 1351
+P+ +P + +R+ L + M L K V+E +E VGL E
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLL------KQRVEEMIELVGLRPEQHK 129
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1411
K + S G RQ + LA+AL+ KVL LDE T +D ++N I + K T+I
Sbjct: 130 KIGQL--SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 1412 IAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
H + V + D ++I++ G +V L
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTP--ICGGQILVDGLNIINTPV 1293
AL +IN I +G +G GKS++L N ++ L P G+IL+DG NI+ TP
Sbjct: 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL-TPK 86
Query: 1294 RD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVG 1346
+D LR + +V Q P F S+ DN+ F ++++ L + + E VE
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNI-AF----GVRLFEKLSRAEMDERVEWALTKAA 141
Query: 1347 LETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA-QTASILQNAIS 1401
L VK+ SG S S GQ+Q +C+AR + +VL LDE + +D T I + +
Sbjct: 142 LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE--LI 199
Query: 1402 SECKG-MTVITIAHRISTVLNM-------DEILILDHGHLVEQGNPQTL 1442
+E K TV+ + H NM D + G L+E GN T+
Sbjct: 200 TELKQDYTVVIVTH------NMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 32/239 (13%)
Query: 1222 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
L+E ++VT Y+ L +++ +IE G VG++GR+G GKS++ L L
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 1275 PICGGQILVDGLNIINTP-------VRDLRGRF-----AVVPQSPFLFEGSLRDNL-DPF 1321
G + G ++ RD++ F AV P+ ++R + +P
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPL 115
Query: 1322 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES-GISFSVGQRQLICLARALLKSSKVLC 1380
L + + E ++ VGL + + S GQ Q I +ARAL K++
Sbjct: 116 RHLTSLDESEQKAR--IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173
Query: 1381 LDECTANVDA--QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1436
LDE +N+D Q + + G + I H + V + + ++D G +VE+
Sbjct: 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG--------------T 687
++G G GK++LL + G GSI G V VP L T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE--DVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 688 IRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747
+ +N+ FG +K L+ + L+ + A K LSGGQ+ R+ALARA
Sbjct: 59 VEENVAFGLKMRKVP-RAEIKPRVLEA-LRLVQLEEFA--DRKPHQLSGGQQQRVALARA 114
Query: 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVM 806
+ I +LD+ LSA+D ++ + L T + TH+ +A++ +D + +M
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 807 DKGQVKWIGSSADL 820
KG++ IG+ ++
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------- 679
L V+L + +G +++IG G GKS+LLN I G T G + G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGV 732
+PW+ T+R+NI + S++ + ++ I+L+ + A G+
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ--- 114
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 790
LSGG + R+A+ARA+ + +LD+ A+DA + R L +M + ++ R+
Sbjct: 115 -LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-LTRGNLQEELM--QIWEEHRVTVLM 170
Query: 791 -THNV-QAISAADMVVVMDKGQVKWIG 815
TH+V +A+ +D VV++ G IG
Sbjct: 171 VTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 7e-13
Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
K L + D + IE G I+G +G+GKS+++ L RL GQ+L+DG++I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 1293 VRDL----RGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL 1347
+L R + A+V QS L ++ DN F M + I + + + + VGL
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDN-TAFGM-ELAGINAEERREKALDALRQVGL 154
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA-ISSECKG 1406
E + S G RQ + LARAL + +L +DE + +D + +Q+ + + K
Sbjct: 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 1407 M-TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
T++ I+H + + + D I I+ +G +V+ G P +L +
Sbjct: 215 QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 8e-13
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V L+ VS + G + +IG G+GK++L N I G + T GS+ G
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 674 ---IAYVPQVPWILSG-TIRDNILFG------KNYDPQSYSETLKACTLDVDISL-MVG- 721
I Q+P + T+ +N++ + + L VG
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAI 777
D+A LS GQ+ RL +ARA+ + +LD+ + ++ ++A I
Sbjct: 134 ADLAD--RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 778 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 811
G T +L H++ + S AD V V+D+G+V
Sbjct: 192 RG-----ITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG- 1278
I QNVT+ Y A+ ++ I G ++G +G GKS++L +L R L C
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1279 -GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1328
G++L DG ++ + PV ++R R +V Q P F S+ +N+ + + + D
Sbjct: 72 KGRVLFDGTDLYDPRVDPV-EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ L K V +E + + ESG S S GQ+Q +C+AR + +V+ +DE + +
Sbjct: 131 VERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185
Query: 1389 DAQTASILQNAISSECKGMTVITIAH 1414
D + ++ + K T++ + H
Sbjct: 186 DPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 9e-13
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------INTPVRD 1295
D +FT+ G I GR+G+GK++++ + LT G+I+++G + I P
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE- 73
Query: 1296 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKE 1353
+ R V Q LF S+R NL +K E+ E V E +G+ +
Sbjct: 74 -KRRIGYVFQEARLFPHLSVRGNL-----RYGMKRARPSERRISFERVIELLGIGHLLGR 127
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTV 1409
S G++Q + + RALL S ++L +DE A +D + L+ + +E G+ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEF-GIPI 185
Query: 1410 ITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ ++H + VL + D +++L+ G + G +
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-13
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG---SIHASGSIAYVPQVP 681
V++ +S +P G+ + + G G GKSSL ILGE+ +G + A G + YVPQ P
Sbjct: 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRP 524
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAYIGEKGVN------- 733
++ GT+RD I++ P S + + D D ++ + +I E+
Sbjct: 525 YMTLGTLRDQIIY-----PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579
Query: 734 ---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
LSGG++ R+A+AR YH +LD+ SAV V ++
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673
L+ VS + G VA++G G+GKS+L + + + G I +G
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75
Query: 674 IAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ V Q P + L ++R N+ + + S + ++ + + A +K
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAEARARIAELLARLGLAERA--DDKVR 131
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 790
L+GG R R+ +ARA+ H + +LD+ +D I ++ L + + L
Sbjct: 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV----RALARDQGLSVL 187
Query: 791 --THNVQAISAADMVVVMDKGQVKWIGSSADL-----AVSLYSGF 828
TH V I A D +VV+ +G+V G++A+L L + F
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAF 232
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPWILSGTIR 689
L +G + A++G GSGKS+LLN I G G + +G + P +S +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 690 DNILFGKNYDPQSY----SETLKACTLD---VDISLMVGGDMAYIGEKGVNLSGGQRARL 742
+N LF Q+ S LK D ++++L G LSGG+R R+
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHNVQAISA-A 800
ALAR + + +LD+ +A+D R + + ++ H K T ++ TH + A
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDP-ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196
Query: 801 DMVVVMDKGQVKWIG 815
VV +D G++ G
Sbjct: 197 QRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVP 678
+ ++L +S + +G +A++G G+GKS+LL + GE+ G++ + I Y
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFD 391
Query: 679 Q--VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-L 734
Q T+ + + + D Q L G+ EK V L
Sbjct: 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLG--------RFGFTGEDQ---EKPVGVL 440
Query: 735 SGGQRARLALARAVYHGSDIYMLD 758
SGG++ARL LA+ + ++ +LD
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLD 464
|
Length = 530 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 32/228 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNIINT-- 1291
AL D++ I ++G +G GKS+ L + R L G++ G N+ +
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 1292 -PVRDLRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEA 1344
PV LR R +V Q P F S+ DN + + + D ++ L + + +EV+
Sbjct: 114 DPVA-LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
+ SG+ S GQ+Q +C+ARA+ +V+ +DE + +D S +++ I
Sbjct: 173 Q-----LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1405 KGMTVITIAH------RISTVLNMDEILI-LDHGHLVEQGNPQTLLQD 1445
+ TV+ + H RIS D+ + L G LVE + + ++
Sbjct: 228 EEYTVVIVTHNMQQAARIS-----DKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 64/240 (26%), Positives = 92/240 (38%), Gaps = 44/240 (18%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
GLI + K AL I+FTIE G VG +G GAGK++ L L L G+
Sbjct: 18 GLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77
Query: 1281 ILVDGLNIINTPVRDLRGRFAVV------------PQSPFLFEGSLRD--NLDPFHMNDD 1326
+ V GL + + R VV F L +L P
Sbjct: 78 VRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARF--- 130
Query: 1327 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
K + E E + LE + S+GQR +A ALL ++L LDE T
Sbjct: 131 --------KKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
Query: 1387 NVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEI-------LILDHGHLVEQG 1437
+D ++N + + G TV+ +H M +I L++D G L+ G
Sbjct: 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSH------YMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII-NTP 1292
AL IN I ++G +G GKS++L L R+ + G ++ +DG +I N
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGLE 1348
V DLR + +V Q P F S+ +N+ L+ + +K + E VE L
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENV-----AYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 1349 TFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
VK+ S GQ+Q +C+AR + V+ +DE T+ +D ++ +
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1405 KGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445
K T++ + H RIS D G LVE + Q + +
Sbjct: 193 KNYTIVIVTHSMQQARRIS-----DRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 54/239 (22%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
+ L+ VSL +PKG + +IG G+GKS+LL I T GS+ G
Sbjct: 11 FGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70
Query: 673 -------------SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACT 711
I + Q +LS T+ +N+ F K Q +E L+
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLE--- 127
Query: 712 LDVDISLMVGGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+VG + +K LSGGQ+ R+A+ARA+ + I + D+ SA+D +
Sbjct: 128 -------LVG-----LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 768 VARWILS-----NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
+ IL N +G T +L TH ++ + D V V+D+G++ G+ +++
Sbjct: 176 TTQSILELLKDINRELG-----LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 651 SSLLNSILGEMMLTHGSIHASG--------------SIAYVPQVPWI-LSGTIRDNILFG 695
S+LL I G + T G+I G I V Q P + T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
+ +A VG E LSGGQ+ R+A+ARA+ +
Sbjct: 61 LRDKEAD-ARAEEALE-------RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 756 MLDD 759
+LD+
Sbjct: 113 LLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 40/238 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1278
L+E + ++ + + +++ TI G + ++G +G GK+++L RL I G
Sbjct: 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVL----RL--IAGFET 65
Query: 1279 ---GQILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSV 1332
G+I++DG +I + P R + F QS LF ++ +N+ F L++
Sbjct: 66 PDSGRIMLDGQDITHVPAENRHVNTVF----QSYALFPHMTVFENV-AF----GLRMQKT 116
Query: 1333 LE---KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
V E + V LE F + S GQ+Q + +ARA++ KVL LDE + +D
Sbjct: 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 1390 AQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
+ L+ + +E K G+T + + H L M D I+++ G + + G P+
Sbjct: 177 YK----LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 49/251 (19%)
Query: 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276
W +Q P A+ + + G +G+VG +G GKS+ A+ L
Sbjct: 26 WFWQ------------PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA 73
Query: 1277 CGGQILVDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDL 1327
G++ G L + + R +R ++ Q P +L+P M + L
Sbjct: 74 TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA-------SLNP-RMTIGEIIAEPL 125
Query: 1328 KIW-SVLEKCHVKEEVEA----VGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+ + L + VK+ V+A VGL + FS GQ Q I +ARAL+ K++
Sbjct: 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185
Query: 1382 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1436
DE + +D AQ ++LQ + E G+++I IAH ++ V ++ D +L++ GH VE
Sbjct: 186 DEPVSALDVSIQAQVVNLLQ-QLQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243
Query: 1437 G-------NPQ 1440
G NP
Sbjct: 244 GTYDEVYHNPL 254
|
Length = 331 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
LIE +NV++R L D+++ + G IVG GAGK+++L+ L P G +
Sbjct: 31 LIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1282 LVDGLNIINTPV-RDLRGRFAVVPQSPFLFEGSLRDN-------LDPFHMNDDLKIW--- 1330
+ G +LR R +V S L E R L F + I+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETVRDVVLSGFF--ASIGIYQED 143
Query: 1331 ---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
L +E +G + S S G+++ + +ARAL+K ++L LDE
Sbjct: 144 LTAEDLAAAQ--WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 1388 VD----AQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQG 1437
+D Q + L+ +++ ++ + H + L+L G +V QG
Sbjct: 202 LDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 53/231 (22%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
VL V L + +G ++A+IG GSGKS+LL I+G + G + G
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72
Query: 674 ------IAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG 721
+ + Q SG T+ +N+ F P L + +I L
Sbjct: 73 YRLRRRMGMLFQ-----SGALFDSLTVFENVAF-----PLREHTRLSEEEIR-EIVLEK- 120
Query: 722 GDMAYIGEKGV------NLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 771
+ +G +G LSGG + R+ALARA+ ++ + D+ + +D +
Sbjct: 121 --LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 772 ILS-NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
I S L T I+ TH++ + AD + V+ G++ G+ +L
Sbjct: 179 IRSLKK-----ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 40/153 (26%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS----IHASGSIAYV 677
+ V+L +S + G + + G G+GKSSL ++ G + GS + + ++
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGMPEGEDLLFL 69
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQ P++ GT+R+ +++ P DV LSGG
Sbjct: 70 PQRPYLPLGTLREQLIY-----PWD----------DV-------------------LSGG 95
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
++ RLA AR + H LD+ SA+D +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESED 128
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 4e-12
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 48/191 (25%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
L+ VSL + +G + A++GE G+GKS+L+ + G G I
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------- 58
Query: 685 SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744
+ GK S + +A G M Y LS G+R + +
Sbjct: 59 --------VDGKEVSFASPRDARRA-----------GIAMVY------QLSVGERQMVEI 93
Query: 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNVQAISA-A 800
ARA+ + + +LD+ +A+ + ++ L+ I +H + + A
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLF--KVI--RRLRAQGVAVIFISHRLDEVFEIA 149
Query: 801 DMVVVMDKGQV 811
D V V+ G+V
Sbjct: 150 DRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
E+++ LN VS + +G +++IG GSGKS+ + I G + G I G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE 74
Query: 674 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P + T+ D++ FG + E + V+ +L + G
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER----VNEALELVGM 130
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 782
+ + LSGGQ+ R+A+A AV I +LD+ S +D + R L I G
Sbjct: 131 QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLELIKTIKGIRDD 189
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
Q T I TH++ ++ +D V+VM GQV+ + +L
Sbjct: 190 YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------ 678
VL V + G V + G GSGKSSL + + + G I G I+ +P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 679 ------QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
Q P + SG+IR N+ E L+ L + + GG A + E G
Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
N S GQR LARA S I ++D+ +++D IL +M +T + H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN-ILQKVVMTA-FADRTVVTIAH 213
Query: 793 NVQAISAADMVVVMDKG 809
V I AD+V+V+ +G
Sbjct: 214 RVSTILDADLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSS---LLNSILGEMMLTHGSIHASG---------- 672
LN +S +P+GS A+IG GSGKS+ L+N +L + I G
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
+ V Q P + T+ D++ FG E +K V L G + YI
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI----VRDVLADVGMLDYI 137
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
+ NLSGGQ+ R+A+A + I +LD+ S +D IL T
Sbjct: 138 DSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV 197
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I TH++ + AD V+V+D G++ GS ++
Sbjct: 198 ISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 685
L +P G +VA++G G+GKS+LLN I G G I + S V +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 686 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 734
T+ NI G S LK + VG ++ L
Sbjct: 79 ENNLFAHLTVAQNIGLGL-------SPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGEL 130
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHN 793
SGGQR R+ALAR + I +LD+ SA+D R + + +K T ++ TH+
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 794 VQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ A AD VV +D G++ GS+ +L
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 5e-12
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 13/231 (5%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1278
G I ++ + Y + L D++ IE G + ++G++G GK+++L A+ G
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1337
G+I + ++ + P RG A++ Q+ LF + DN+ F + K+
Sbjct: 62 GRIAIADRDLTHAPPHK-RG-LALLFQNYALFPHLKVEDNV-AFGLRAQ-KMPKADIAER 117
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASIL 1396
V + ++ VGL S G +Q I +ARA+ VL LDE + +DA A++
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 1397 QN--AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
+ A+ E +T++ + H L + D+ I+ G L G PQ L
Sbjct: 178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ +IE +N+ + Y AL++IN I + ++G +G GKS+ L L R+ + G
Sbjct: 5 EAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 1280 -----QILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLD---PFH-MNDDLK 1328
++ +G NI N + +LR + +V Q+P F S+ DN+ H D K
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKK 122
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+ ++E+ K L VK+ + +S S GQ+Q +C+AR L V+ +DE
Sbjct: 123 LDEIVEQSLKKS-----ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRI 1416
T+ +D + ++ I + + T+I + H +
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 681
VL +SL + KG +V +IG GSGKS+LL + G GSI G + +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 682 WILSG--------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGGD 723
+ T+ +N+ K E L+ VG
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL-LE-----KVG-- 125
Query: 724 MAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSN 775
+ +K LSGGQ+ R+A+ARA+ + + D+ SA+D +V +
Sbjct: 126 ---LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 776 AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
A G T I+ TH + A AD V+ MD+G++ G +
Sbjct: 183 AEEG-----MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 23/230 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1276
+I +V + Y AL I+ ++G +G GKS+ L L R+ +
Sbjct: 5 IITSSDVHLFYGKF--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1277 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G + + G NI N V LR + +V Q P F S+ +N+ L++ V +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----GLRLAGVKD 117
Query: 1335 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
K + E VE + VK ES +S S GQ+Q +C+AR L V+ LDE T+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1435
+D +++ ++N + T+I + H + + D+ G+L+E
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTP--ICGGQILVDGLNIINTPV 1293
AL +IN +I I+G +G GKS+ LN + ++ P G++ +G NI+ V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 1294 R--DLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE----AV 1345
+LR +V Q F S+ DN+ P +I K ++E VE V
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIVEKSLKDV 139
Query: 1346 GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
L VK+ +S S GQ+Q +C+ARAL + VL +DE T+ +D + ++ I
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 1402 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
+ T++ + H + + D+ G LVE +
Sbjct: 200 KLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 45/227 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
++ VS L +G + ++GE GSGKS+L + G + + GSI G
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 674 ---IAYVPQVP-----------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I V Q P IL+ +R + +E L+ L +
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF--- 422
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
D Y E LSGGQR R+A+ARA+ + +LD+ +SA+D V +L N +
Sbjct: 423 --LDR-YPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKD 474
Query: 780 PHMLQK----TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
LQ+ T + +H++ + AD V VM G++ G + +
Sbjct: 475 ---LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518
|
Length = 539 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L++ +N+ RY+ L ++ +I G V IVG +G+GKS++L+ L L G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 1280 QILVDG--LNIINTPVR-DLRGR-FAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVL 1333
++L +G L+ +++ R LR + + Q FH + D ++ L
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQ---------------FHHLLPD----FTAL 101
Query: 1334 E------------KCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377
E KE +E VGLE + S G+RQ + +ARAL+
Sbjct: 102 ENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161
Query: 1378 VLCLDECTANVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1434
++ DE T N+D A I+ + + + E + + + H + +D +L + G L
Sbjct: 162 LVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
Query: 1435 E 1435
Sbjct: 221 N 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNIINT-- 1291
AL D++ I T +G +G GKS+ L L R+ C G+I +DG +I +
Sbjct: 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 1292 -PVRDLRGRFAVVPQSPFLFEGSLRDN---------LDPFHMNDDLKIWSVLEKCHVKEE 1341
V LR R +V Q P F S+ +N L D + + L K + EE
Sbjct: 94 DVVE-LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAI 1400
V + + E G S GQ+Q +C+ARA+ S +V+ +DE C+A TA + + I
Sbjct: 153 V-----KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELI 206
Query: 1401 SSECKGMTVITIAHRISTVLNMDEILILDH-GHLVEQGN 1438
+ T++ + H + + + H G+LVE G+
Sbjct: 207 DELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 8e-12
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 22/238 (9%)
Query: 1219 FQGLIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275
F I NV+ Y P AL++ + T + ++G TG+GKS+++ L
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 1276 ICGGQILVD------GLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNL--DPFHMND 1325
GQ +V L I V+ LR +V Q P LF+ ++ ++ P ++ +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKE-VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 1326 DLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+ + +K V E ++ V L E +VK S S GQ++ + LA + L LDE
Sbjct: 122 NKQ--EAYKK--VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1385 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1439
T +D + N K +I + H + VL + DE++++ G ++ G+P
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
Length = 289 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 66/243 (27%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTP---- 1292
AL DI G + ++G +GAGKSS+L L L G + + G + TP
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-----CHV----KEEVE 1343
+R+LR +V Q + NL P H+ +V + C V K++
Sbjct: 77 IRELRRNVGMVFQ---------QYNLWP-HL-------TVQQNLIEAPCRVLGLSKDQAL 119
Query: 1344 A--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1391
A + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D AQ
Sbjct: 120 ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1392 TASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHGHLVEQG------N 1438
SI++ + G+T + + H + S V+ M+ GH+VEQG
Sbjct: 180 IVSIIRELAET---GITQVIVTHEVEVARKTASRVVYMEN------GHIVEQGDASCFTQ 230
Query: 1439 PQT 1441
PQT
Sbjct: 231 PQT 233
|
Length = 242 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 54/218 (24%), Positives = 110/218 (50%), Gaps = 26/218 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG-LNIINTPVRDLR 1297
AL+D++F+++ G ++G GAGK+++++ + T G++L DG ++ P +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 1298 ----GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEA 1344
GR F Q P +FE ++R+NL+ +N D +++ L E+ + E +
Sbjct: 80 RAGIGRKF----QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLAT 134
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DAQTASI--LQNAIS 1401
+GL S GQ+Q + + L + K+L LDE A + DA+T L +++
Sbjct: 135 IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 1402 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
+ +++ + H + V + D++ +L G ++ +G+
Sbjct: 195 GKH---SILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 23/207 (11%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----SIAYVPQ 679
++ VS + G + ++G G+GK++ L + G + G G A +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78
Query: 680 VPWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA-YIGE 729
+S T R+N+ F Y + + L A L+ + M +
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLK--GDELTA-RLEELADRL---GMEELLDR 132
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
+ S G R ++A+ARA+ H + +LD+ + +D R L I L K +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR-ALREFIRQLRALGKCILF 191
Query: 790 CTHNVQAISA-ADMVVVMDKGQVKWIG 815
TH +Q + D VVV+ +G+V + G
Sbjct: 192 STHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 672
LP + A+ G GSGK++L+ I G G I +G
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 673 SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I YV Q + ++R N+ +G K P + + + I ++G +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG--------R 127
Query: 731 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM---LQKT 786
LSGG++ R+A+ RA+ + ++D+ L+A+D IL P++ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL------PYLERLHAEF 181
Query: 787 RILC---THNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNE 833
I +H++Q + AD VVV++ G+V G A++ S + + +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 24/240 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTP--I 1276
L+ Q+V + Y A+ ++N ++ GT ++G +G GK++ L A+ R LTP
Sbjct: 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR 61
Query: 1277 CGGQILVDGLNIINTPVRD--LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1333
G+IL+DG +I V +R R +V Q P F S+ DN+ LK+ +
Sbjct: 62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----GLKLAGIR 116
Query: 1334 EKCHVKEEVE----AVGLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECT 1385
++ H+ E E L VK+ S GQ+Q +C+ARAL ++L +DE T
Sbjct: 117 DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
+ +D + + +++ ++ K T+I + H + + D G LVE G L
Sbjct: 177 SALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-11
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
S+ A+ D++F + G VGI G G G++ + ALF L P G+I +DG + R
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 1295 DLRGR-FAVVPQSPF---LFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1349
D A VP+ L S+ +N+ L
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENI-------------AL---------------- 101
Query: 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECKGMT 1408
S G +Q + LAR L + +VL LDE T VD A I + G
Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1409 VITIAHRISTVLNM-DEILILDHGHL 1433
V+ I+ + +L + D IL++ G +
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1295
A+ D + I G +G +G GKS++L +L R+ + G ++ + V
Sbjct: 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82
Query: 1296 ----LRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEAV 1345
+R +V Q P F S+ DN L+ + + ++ L+ + +EV+
Sbjct: 83 DPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK 142
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
+K SG+S S GQ+Q +C+ARA+ +VL LDE + +D ++ + K
Sbjct: 143 -----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1406 GMTVITIAHRISTVLNMDEILIL---------DHGHLVEQGNPQTLLQD 1445
T+ + H + + + + G+LVE G + Q+
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-11
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 56/139 (40%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
++L +SL + G + ++G G+GKS+LL I GE+ G + ++ I Y Q
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
LS GG++
Sbjct: 71 ----LS--------------------------------------------------GGEK 76
Query: 740 ARLALARAVYHGSDIYMLD 758
RLALA+ + ++ +LD
Sbjct: 77 MRLALAKLLLENPNLLLLD 95
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1286
++++ Y+ +AL D++ TI G V ++G +G GK+++LN + G I ++G
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 1287 NIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSV---LEKCHVKEEV 1342
+ VV Q+ L ++ DN+ F L++ + + + +
Sbjct: 67 ----RRIEGPGAERGVVFQNEALLPWLNVIDNVA-F----GLQLRGIEKAQRREIAHQML 117
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
VGLE + S G RQ + +ARAL ++L LDE +DA T +Q +
Sbjct: 118 ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177
Query: 1403 ECK--GMTVITIAHRISTVLNM-DEILILDHG 1431
+ G V+ I H I L + +++L G
Sbjct: 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-11
Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+ ++++ +Y S L I+FT+ G ++G GAGKS+++ + + P G +
Sbjct: 11 LLCARSISKQY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1282 LVDGLNIIN-TPVRDLRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEK- 1335
+ G TP + + +VPQ P LF S+++N+ P K+ +L
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1336 -CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1393
C + + A LE V RQ++ + R L++ S++L LDE TA++ A+T
Sbjct: 129 GCQLDLDSSAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
+ +G+ ++ I+H++ + + D I ++ G + G L D+
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 670
+ L ++L +PK + A+IG G GKS+LL S I G+++ I+
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 671 SG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMV 720
+ V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG----PRLHGIKDKK-ELDEIVEESLKK 127
Query: 721 GGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
+ ++ + LSGGQ+ RL +ARA+ ++ +LD+ SA+D I
Sbjct: 128 AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE--E 185
Query: 777 IMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
++ L+K T ++ THN+ QA +D G++
Sbjct: 186 LI--QELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG--GQILVDGLNII--NT 1291
AL+ ++ ++G +G+GKS++L ++ R L P G I+ +G NI T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGL 1347
DLR +V Q P F S+ +N+ L++ + +K + E VE +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENV-----VYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 1348 ETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
VK +S + S GQ+Q +C+AR L S K++ LDE T+ +D +A ++ +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 1404 CKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445
T++ + RIS D G L+E + + + +
Sbjct: 195 KDDYTMLLVTRSMQQASRIS-----DRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-11
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPICGG 1279
+E +NVT Y ++ IN TI+ G + ++G G+GKS+ +L L++ P G
Sbjct: 323 LELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQ-SG 378
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+IL+DG + D R F+ V LF+ L P + + LE+ +
Sbjct: 379 EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPALVEKWLERLKMA 435
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
++E S + S GQ++ + L AL + +L LDE A+ D
Sbjct: 436 HKLELEDGRI----SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 1400 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVE 1435
+ + G T+ I+H ++ D +L + +G L E
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII--NTP 1292
L +IN I+G +G GKS++L AL R+ I G +L+D NI N
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1352
V +LR R +V Q P F S+ DN+ S L++ V++ + L VK
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV-VEKSLRQAALWDEVK 138
Query: 1353 E----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
+ SG++ S GQ+Q +C+AR L +V+ +DE + +D + ++ + + T
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYT 198
Query: 1409 VITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ + H + D L G LVE G
Sbjct: 199 IAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+N ++L + KG + +IG GSGK++ + I + T G I G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 673 SIAYVPQ----VPWILSGTIRDNI-----LFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I YV Q P + T+ +NI L + + D ++L+
Sbjct: 76 KIGYVIQQIGLFPHM---TVEENIALVPKLLK-------WPKEKIRERADELLALVGLDP 125
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
+ LSGGQ+ R+ +ARA+ + ++D+ A+D + R L
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-ITRDQLQEEFKRLQQE 184
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L KT + TH++ A AD + +M G++ +G+ ++
Sbjct: 185 LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 9e-11
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
S + D++FT+ G +GI G GAG++ + ALF P G+IL+DG + R
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 1295 D-LRGRFAVVP---QSPFLFEG-SLRDNLDPFHMN----DDLKIWSVL----EKCHVKEE 1341
D ++ A VP +S L S+ +N + ++ E+ +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAEN-----ITLASLRRFSRRGLIDRRKERALAERY 384
Query: 1342 VEAVGLETFVKESGI-----SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASI 1395
+ + +K + S G +Q + LAR L KVL LDE T +D A I
Sbjct: 385 IRRLR----IKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440
Query: 1396 LQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1434
+ I G ++ I+ + +L + D IL++ G +V
Sbjct: 441 YR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
L VSL + +G ++G GSGKS LL +I G + G I +G
Sbjct: 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71
Query: 674 -IAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I+YVPQ P + T+ NI +G + D + + +I+ M+G D
Sbjct: 72 DISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVL------EIAEMLGID-H 121
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHM 782
+ K LSGG++ R+A+ARA+ I +LD+ SA+D + R L
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR---KE 178
Query: 783 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
T + TH+ +A + AD V +M G++ +G
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N V++ ++L + +G++V ++G G GK+++L + G T G I G
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 673 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDM 724
S A P + ++ +N+ +G E + V +L +V D+
Sbjct: 79 DICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQR----VKEALELV--DL 126
Query: 725 AYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A ++ V+ +SGGQ+ R+ALARA+ + + D+ LS +DA + R M
Sbjct: 127 AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR----------SMR 176
Query: 784 QKTRIL----------CTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+K R L TH+ +A + +D V+VM+KG++ IGS +L
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 41/221 (18%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL DI+F I G +VGI+G GAGKS++L + + G++ V G +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---------KV-- 90
Query: 1299 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGLETF 1350
+P + F+ L R+N+ ++ + + E +E+ L F
Sbjct: 91 -------APLIELGAGFDPELTGRENI---YLRGLILGLTRKEIDEKVDEIIEFAELGDF 140
Query: 1351 VKESGISFSVGQRQLICLARALLKSSK--VLCLDECTANVDAQ----TASILQNAISSEC 1404
+ + ++S G LA ++ + +L LDE A DA L +
Sbjct: 141 IDQPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE--- 195
Query: 1405 KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1444
K T++ ++H + + D + L+HG + +G+P+ ++
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+F+N+ + P+ + ++F + G + I G G GKSS+ L L P+ GG++
Sbjct: 452 IKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+G+ VPQ P++ G+LRD + ++D+K + +K +++ +
Sbjct: 511 KPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDK-DLEQIL 558
Query: 1343 EAVGLETFVK-ESGIS--------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+ V L ++ E G S S G++Q I +AR + LDECT+ V
Sbjct: 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-- 616
Query: 1394 SILQNAISSECK--GMTVITIAHRIS 1417
++ + C+ G+T+ +++HR S
Sbjct: 617 --VEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1295
AL I+ + G VG+ G GAGKS+++ L + P G G+I G + + +RD
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRD 74
Query: 1296 L-RGRFAVVPQSPFLF-EGSLRDN--------LDPFHMNDDLKIWSVLEKCH--VKE-EV 1342
R ++ Q L E S+ +N L M + + ++E ++
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY----LRAKNLLRELQL 130
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
+A + V + G GQ+QL+ +A+AL K +++L LDE ++++ + IL + I
Sbjct: 131 DADNVTRPVGDYGG----GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1403 -ECKGMTVITIAHRISTV 1419
+ G+ + I+H+++ V
Sbjct: 187 LKAHGVACVYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
V+ + +S L G + + G GSGK++LL I G + G+I G P V
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 685 -----------SGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ T+ +N+ F + + + L+A L +A++
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---------APLAHL--P 124
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
LS GQ+ R+ALAR + I++LD+ +A+DA
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1278
Q I+ +N+ + Y AL +++ I + ++G +G GKS+ + L R+ +
Sbjct: 10 QPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 1279 ----GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI 1329
G++ ++G +I V +LR +V Q P F S+ DN+ H + +
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 1330 WSVLEKCHVKEEVEAVGLETF--VKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
V+E A+ ET +K +S S GQ+Q +C+AR L K++ DE T+
Sbjct: 128 DGVVENAL---RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184
Query: 1388 VDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+D + + +++ I + K T++ + H + + D G L+E G + + +
Sbjct: 185 LDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L ++L + KG + +IG+ GSGKS+L + G + G + SG
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 674 -IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q P + T+ +++ FG P++ VD +L G Y
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFG----PENLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ +ALA + + + D+V S +D +L I H KT +
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYI 192
Query: 791 THNVQAISAADMVVVMDKGQVKWIGS 816
THN++ + AD ++VMD+G++ G
Sbjct: 193 THNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-------GSIHASGSIA 675
+ + V++ + K + A+IG G GK++LL SI M H G I+ G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIYFKGQDI 72
Query: 676 YVP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL 712
Y P Q P +I DN+ FG K+ + E+LK L
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 772
++ + + + G LSGGQ+ RL +ARA+ ++ +LD+ SA+D + I
Sbjct: 133 WDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI 185
Query: 773 LSNAIMGPHMLQK-----TRILCTHNV-QAISAADMVVVMDKGQV 811
+L++ T ++ THN+ QAI AD + M +G++
Sbjct: 186 EK-------LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 43/224 (19%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
V+ RY L+ ++ I G V +VGR+G GKS++L L L G++L
Sbjct: 16 NAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG- 72
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLF-------------EGSLRDNLDPFHMNDDLKIWSV 1332
P+ + R ++ Q L +G RD
Sbjct: 73 ----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA--------------- 113
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
+ + AVGL E + S GQ+Q + LARAL+ +L LDE +DA T
Sbjct: 114 -----ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 1393 ASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+Q+ I S + G TV+ + H +S + M D +L+++ G +
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
+ ++ T G+ G++G G+GKS++L L G + + G+++ R R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 1300 FAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETF 1350
A+V Q S ++RD + P +W+ + H V + L
Sbjct: 77 VALVEQDSDTAVPLTVRDVVALGRIPH-----RSLWA-GDSPHDAAVVDRALARTELSHL 130
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQTASILQNAISSE--CKG 1406
+ S G+RQ + +ARAL + K+L LDE T ++D AQ ++ A+ E G
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL---ALVRELAATG 187
Query: 1407 MTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+TV+ H ++ + D +++LD G +V G P+ +L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1278
L+E +N+T + + A L +++ + G V + G GAGKS+++ L + P G
Sbjct: 5 LLEMKNITKTF-GGVKA-LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61
Query: 1279 GQILVDGLNIINTPVRD--------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
G+I+ +G + + +RD + A+V + L L + + P + D ++
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 1331 SVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+K + +++ + T V G+ GQ+QL+ +A+AL K +++L LDE TA++
Sbjct: 122 LRAQK--LLAQLKLDINPATPVGNLGL----GQQQLVEIAKALNKQARLLILDEPTASLT 175
Query: 1390 AQTASILQNAISS-ECKGMTVITIAHRISTV 1419
++L + I + G+ I I+H+++ V
Sbjct: 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEV 206
|
Length = 506 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------IAYVPQ---V 680
L KG L+ ++G G+GK++LL +ILG + G++ +G+ I YVPQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQR 739
W ++ ++ G+ A V +L G + + ++ V LSGGQR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-LTELADRPVGELSGGQR 119
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRILCTHN-VQA 796
R+ +ARA+ + +LD+ + +D + L + G ++ TH+ QA
Sbjct: 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT---AILMTTHDLAQA 176
Query: 797 ISAADMVVVMDKGQVKWIGSSADL 820
++ D VV+++ G+V G+ L
Sbjct: 177 MATCDRVVLLN-GRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR- 1297
AL+D++ ++ G I+G GAGK+++++ + T G +L G ++ P +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 1298 ---GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEAV 1345
GR F Q P +FE ++ +NL+ + D +++ L EK ++E +E +
Sbjct: 77 AGIGRKF----QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DA---QTASILQNAIS 1401
GL S GQ+Q + + L++ K+L LDE A + D +TA +L++ ++
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190
Query: 1402 SECKGMTVITIAH------RIS---TVLNMDEIL 1426
+ +V+ + H I+ TVL+ +L
Sbjct: 191 GKH---SVVVVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 28/221 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DG---LNIINTPV- 1293
+H+ + IE G ++G +G+GKS++L A+ L P+ G +LV DG +++ N
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA 98
Query: 1294 --RDLR-GRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLE---KCHVKEEVE 1343
R LR R ++V Q P+ ++ +N+ F L++ + + + V E++E
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWR---TVEENV-AF----GLEMQGMPKAERRKRVDEQLE 150
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AI 1400
VGL + S G +Q + LARA + +L +DE + +D + LQ+ +
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 1401 SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
S+ K T++ ++H + L + + I I++ G +++ G P+
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673
L VS + +G VA++G GSGKS+L + G ++ G+I G
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + T++D++ FG E ++ VD +L G ++ +
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER----VDQALRQVGMEDFLNREP 138
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC- 790
LSGGQ+ R+A+A + DI +LD+ S +D + R +L + ++ I
Sbjct: 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV---RQLKEQKGITVL 195
Query: 791 --THNVQAISAADMVVVMDKGQVKWIG 815
TH++ + AD V+VM+KG++ G
Sbjct: 196 SITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY + L +++ +PK + A+IG G GKS+LL I G+++
Sbjct: 15 WY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69
Query: 663 LTHGSIHASGS--------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
+I SG+ I V Q P +I +N+ +G P+ + E K TLD
Sbjct: 70 YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKK-TLDT 124
Query: 715 DISLMVGGDMAY------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
+ + G + + + ++LSGGQ+ RL +AR + ++ ++D+ SA+D +
Sbjct: 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-I 183
Query: 769 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
A + + I L+K T I+ THN+ QA +D M G++
Sbjct: 184 ATAKIEDLIE---DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 33/160 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 679
L ++L L G L+ V+G G GK++LLN I G + HGSI G P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 680 ------VPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+PW ++DN+ FG K + + LK L+ G + Y
Sbjct: 76 FQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-------GAEKRY 125
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
I + LSGGQR R+ +ARA+ + +LD+ A+DA
Sbjct: 126 IWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 27/245 (11%)
Query: 1219 FQGLIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1271
+ L+E +N+ T RY+ A+ ++FT+ G + I+G G+GKS++ L
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 1272 RLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN------LD-PFH 1322
+ G++L+D L+ + R R R ++ Q P SL LD P
Sbjct: 61 GMIEPTSGELLIDDHPLHFGDYSYRSQRIR--MIFQDP---STSLNPRQRISQILDFPLR 115
Query: 1323 MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+N DL+ EK + E + VGL + GQ+Q + LARAL+ KV+
Sbjct: 116 LNTDLEP-EQREK-QIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173
Query: 1382 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
DE A++D S L N + E +G++ I + + + ++ D++L++ G +VE+G+
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
Query: 1439 PQTLL 1443
+L
Sbjct: 234 TADVL 238
|
Length = 267 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-10
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQVPW 682
+L++++ + G + + GE G+GK+SLL ++ G G I A ++ ++PQ P+
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466
Query: 683 ILSGTIRDNILF---GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----L 734
+ GT+R+ + + ++ L L + + L
Sbjct: 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL----------DEEDRWDRVL 516
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
SGG++ RLA AR + H LD+ SA+D +
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
|
Length = 604 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 41/223 (18%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------ASGS------- 673
L V++ +P GS VA+IG GSGKS+LL + G + T G++ +G
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 674 ----IAYVPQVP--WILSGTIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMA 725
+ V Q P + T+ +I FG P ++ SE A ++ +VG
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG----PMNFGVSEE-DAKQKAREMIELVGLPEE 137
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--- 782
+ LSGGQ R+A+A + ++ +LD+ + +D + R +M M
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GR----KEMME--MFYK 190
Query: 783 LQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L K T +L TH+++ A AD +VVM KG V G+ ++
Sbjct: 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-10
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 38/229 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRD 1295
A+ ++F + G + +VG +G+GKS+ AL RL GG+I+ +G I ++
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWSVLE----KCHVKEEVEAVG 1346
LR + Q P+ +LDP + + L++ +L V +E VG
Sbjct: 399 LRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451
Query: 1347 LET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
L + E FS GQRQ IC+ARAL + KV+ DE + +D + N +
Sbjct: 452 LLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL 507
Query: 1402 SECK--GMTVITIAHRISTVLNMD-EILILDHGHLVEQG-------NPQ 1440
+ G+ + I+H ++ V + + ++ G +VE G NPQ
Sbjct: 508 DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQ 556
|
Length = 623 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 22/221 (9%)
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----IC-GGQI 1281
+ + ++ L D NFT+ + G +G+GK+S++N + LT I G++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
LVD I P + R V Q LF ++R NL +W + +
Sbjct: 62 LVDAEKGIFLPPE--KRRIGYVFQDARLFPHYTVRGNL-------RYGMWKS-MRAQFDQ 111
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQ-- 1397
V +G+E + + S G++Q + + RALL + ++L +DE A++D IL
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 1398 NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ E + ++ ++H + VL + D +++L++G + G
Sbjct: 172 ERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L++I+F++ G I G +G GKS++L + L G +L +G +I R +
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 1300 FAVVPQSPFLFEGSLRDNL-----------DPFHMNDDLKIWSVLEKCHVKEEVEAVGL- 1347
+ Q+P LF ++ DNL DP DDL E L
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDL---------------ERFALP 127
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECK 1405
+T + ++ S G++Q I L R L KVL LDE T+ +D + I +
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 1406 GMTVITIAHRISTVLNMDEILIL 1428
+ V+ + H + + D+++ L
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 53/245 (21%)
Query: 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQIL 1282
+ ++ MR+ + T+E G +V I+G +GAGKS++LN A F LTP G +
Sbjct: 11 YHHLPMRF-----------DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTP-ASGSLT 57
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----------MNDDLKIWSV 1332
++G + TP + P S LF+ +NL H +N LK+ +
Sbjct: 58 LNGQDHTTTPP-------SRRPVS-MLFQ---ENNLFS-HLTVAQNIGLGLNPGLKL-NA 104
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1391
++ + +G+E + S GQRQ + LAR L++ +L LDE + +D A
Sbjct: 105 AQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 1392 TASILQNAISSEC--KGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLL 1443
+L +S C + +T++ ++H RI+ +++ D G + G LL
Sbjct: 165 RQEMLT-LVSQVCQERQLTLLMVSHSLEDAARIAP----RSLVVAD-GRIAWDGPTDELL 218
Query: 1444 QDECS 1448
+ S
Sbjct: 219 SGKAS 223
|
Length = 232 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 48/248 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICG 1278
IE +N+ ++ L +H ++ T++ G + +VG +G+GKS A + P
Sbjct: 5 IELRNIALQAAQPL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 1279 GQILVDGLNIINTPV--RDLRGR-FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLE 1334
G++L+DG PV LRGR A + Q+P R +P H M+ E
Sbjct: 62 GRVLLDG-----KPVAPCALRGRKIATIMQNP-------RSAFNPLHTMHT-----HARE 104
Query: 1335 KCHVK----------EEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
C +EAVGLE +K S G Q + +A ALL + +
Sbjct: 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
Query: 1382 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1436
DE T ++D A+ +L++ + GM ++T H + V + D++ ++ HG +VEQ
Sbjct: 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVT--HDMGVVARLADDVAVMSHGRIVEQ 222
Query: 1437 GNPQTLLQ 1444
G+ +TL
Sbjct: 223 GDVETLFN 230
|
Length = 254 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------------IAYVP 678
+ + G G+GKS+LL I G G+I +G+ I V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 679 Q----VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
Q P + +R+N+ FG D S E L + + ++ Y +
Sbjct: 82 QQYALFPHL---NVRENLAFGLKRKRNREDRISVDELLDL----LGLDHLLN---RYPAQ 131
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRI 788
LSGG++ R+ALARA+ ++ +LD+ SA+D + R L + L I
Sbjct: 132 ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-RLQLLPELKQIKKNLNIPVI 186
Query: 789 LCTHN-VQAISAADMVVVMDKGQVKWIG 815
TH+ +A AD +VVM+ G++++IG
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+N VSL + +G +V ++G G+GK++ I+G + G I A
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 672 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I Y+PQ I T+ +NIL G + + E L+ + I+
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EKLEELLEEFHIT-------H 125
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAIMG 779
K +LSGG+R R+ +ARA+ +LD+ + VD + I L + +G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 780 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
+L T HNV + +S D ++ +G+V G+ ++A
Sbjct: 186 --------VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-10
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+N L + KG + ++G GSGKS+ + + + T G I G
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 673 -----SIAYVPQ-VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q TI N G + Q E V + +
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG---LEEYE 123
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + + +
Sbjct: 124 HRYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDP-LIRDSMQDELKKLQAT 178
Query: 783 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
LQKT + TH++ +AI D +V+M G++ +G+ ++
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 52/229 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L+ VSL L G ++A++G G+GKS+LL ++ GE+ G + +G
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 673 SIAYVPQ-VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
A +PQ T+++ + G +P+ D+S
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-------GL 128
Query: 727 IGEKGVNLSGGQRARLALAR------AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
G LSGG++ R+ LAR LD+ SA+D +++
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD-------IAHQH--- 178
Query: 781 HMLQKTRILCT---------HNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
H L+ R L H++ + AD +V++ +G+V GS D
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL D++F + G ++G++GR GAGKS++L L + P G + V G +
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RV---------- 85
Query: 1299 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1350
S L F L R+N+ ++N L S E +E+ L F
Sbjct: 86 -------SSLLGLGGGFNPELTGRENI---YLNGRLLGLSRKEIDEKIDEIIEFSELGDF 135
Query: 1351 ----VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1405
VK +S G + + A A +L +DE A DA Q + K
Sbjct: 136 IDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 1406 GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
G TVI ++H S++ + D L+L+ G + G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 45/230 (19%)
Query: 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L++ N+ RY+ LH+++F+I G + IVG +G+GKS++L+ L L G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 1280 QILVDG--LNIINTPVR-DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1334
++ +G ++ +++ + +LR + + F+++ FH L ++ LE
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQ-----KLGFIYQ---------FH--HLLPDFTALENV 108
Query: 1335 --------------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380
E + AVGLE S G+RQ + +ARAL+ + +++
Sbjct: 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
Query: 1381 LDECTANVDAQTA----SILQNAISSECKGMTVIT----IAHRISTVLNM 1422
DE T N+DA+ A +L + V+T +A R+S L M
Sbjct: 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218
|
Length = 233 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 6e-10
Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 86/418 (20%)
Query: 446 TEKMMKQKDERIRRTGEILTHI-------RTLKMYGWEQIFSSWLMKTRSSEVK----HL 494
T + +KQ + R I +H+ T++ +G + F + K + +L
Sbjct: 1048 TSQQLKQLESEAR--SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105
Query: 495 STRKYLDAWC----VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 550
ST ++ VFF F TF A+ +Q V L L +++S
Sbjct: 1106 STLRWFQMRIDIIFVFF-------FIAVTF--IAIGTNQDGEGEVGIILTLAMNILS--- 1153
Query: 551 SFPWVINGLIDA---FISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 607
+ W +N ID S+ R+ +F+ +L Q PS G S + +
Sbjct: 1154 TLQWAVNSSIDVDGLMRSVSRVFKFI-------DLPQEEPRPS--GGGGKYQLSTVLVIE 1204
Query: 608 MQDATCSWYCNNE-----------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656
A W + E VL +S + G V ++G GSGKS+LL++
Sbjct: 1205 NPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264
Query: 657 ILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP--Q 701
+L ++ T G I G + +PQ +I SGT R KN DP Q
Sbjct: 1265 LL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR------KNLDPYEQ 1317
Query: 702 SYSETLKACTLDVDISLMVG---GDMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYML 757
E + +V + ++ + ++ G LS G + + LAR++ + I +L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 758 DD---VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
D+ L V Q+ R L + T IL H V+A+ +V++ VK
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFS-----NCTVILSEHRVEALLECQQFLVIEGSSVK 1430
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1291
A+ +N I I+G +G GKS+ L A+ R L P C G ++ DG +I T
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH-MNDDLKIWSVLEKCHVK----EEVE 1343
LR + +V Q P F S+ DN+ H +ND ++ ++EK K +EV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
+ ++ + S GQ+Q +C+AR L ++L LDE T+ +D + + +++ I E
Sbjct: 174 -----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI-QE 227
Query: 1404 CKGMTVITI-------AHRISTVLNMDEILILDHGHLVE 1435
+G I I A R+S D + G LVE
Sbjct: 228 LRGSYTIMIVTHNMQQASRVS-----DYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302
++FT+ G + + G G GK+++L L L G++ +G T + + R
Sbjct: 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-----TALAEQRDE--- 70
Query: 1303 VPQSPFLFEG---------SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
P L+ G S +NL H I L AVGL F
Sbjct: 71 -PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDAL---------AAVGLTGF 120
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1408
S GQ++ + LAR L + + LDE T +D ++L + + G+
Sbjct: 121 EDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 1409 VIT 1411
++T
Sbjct: 181 LLT 183
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
L ++L + G VA+IG G+GKS+LL I + + GSI G
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73
Query: 673 ------SIAYVPQ-VPWILSGTIRDNILFGK-NYDP------QSYSETLKACTLD----V 714
I + Q I T+ +N+L G+ Y P +SE K L V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
++ D AY + LSGGQ+ R+A+ARA+ D+ + D+ ++++D + ++ ++
Sbjct: 134 GLA-----DKAYQ--RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD 186
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T I+ H V A AD +V + G++ + G+ ++L
Sbjct: 187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L +N TI+ G + ++G +G GKS++LN + L G ++++G I P D R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ-ITEPGPD---R 56
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE-VEAVGLETFVKESGISF 1358
V L ++R+N+ ++ L S E+ + EE + VGL +
Sbjct: 57 MVVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRI 1416
S G +Q + +ARAL KVL LDE +DA T LQ + + +TV+ + H +
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 1417 STVLNM-DEILILDHG 1431
L + D +++L +G
Sbjct: 176 DEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+++ V + P GSL ++G GSGKS+LL + G + G++ +G
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 674 -IAYVPQ-VPWILSGTIRDNILFGK-------NYDPQSYSETLKACTLDVDISLMVGGDM 724
+A V Q + T+RD + G+ D + + ++S + DM
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAIMGPHM 782
+ LSGG+R R+ +ARA+ + +LD+ + +D AQ+ L +
Sbjct: 136 S-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-- 186
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T + H++ A S D VVV+D G+V G ++
Sbjct: 187 -GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 56/229 (24%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV---------DGLNII 1289
AL++I++T E I+G +G+GKS+++ L G I V + +I
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1290 NTPV-------RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
P ++LR R ++V Q P LF+ ++ ++ + L + K K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSEAKKLAKF 158
Query: 1341 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ +GL +++++ S S GQ++ + +A L ++L DE TA +D + +
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 1400 I-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
I ++ TV I H + VL + DE++++D G +++ G P + D+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660
S D+ + +++ C + +E + V LN +S K + +IG GSGKS+L+ G
Sbjct: 17 SDDIILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 661 MMLTHGSIHASG-----------------------------SIAYVPQVP--WILSGTIR 689
+ +G+I ++ V Q P + TI
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 690 DNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749
+I+FG SE K ++ +G D +Y+ LSGGQ+ R+A+A +
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDK 808
+I + D+ + +D + ++ I+ KT + TH + + AD V+VMDK
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 809 GQV 811
G++
Sbjct: 252 GKI 254
|
Length = 320 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1296
L DIN I G V + G +G+GK+++L + L + G + V G + ++L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 1297 RGRFAVVPQSPFLFEGSL--RDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE 1353
R + Q+ L G L R N+ + +L E+ +EAVGL +
Sbjct: 81 RRNIGYIFQAHNLL-GFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDY 137
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
+ S GQ+Q + +ARAL+ K++ DE TA +D+++ + + + G T++
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 1412 IAH--RISTVLNMDEILILDHGHLV 1434
+ H RI V D I+ ++ G L+
Sbjct: 198 VTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
L+ V++ + G V +IG GSGKS+L+ + G + T G I G
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
+ V Q P + TI +I FG S E ++ +VG D
Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDY 137
Query: 728 GEKG-VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK- 785
+K LSGGQ+ R+A+A V I +LD+ + +D + IL N I H
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNM 196
Query: 786 TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
T IL +H+++ ++ AD ++VM+KG+ + G+ +
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ VSL L G + ++G G+GK++L+ + + G+I G
Sbjct: 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72
Query: 674 -IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT---LDVDISLMVGG-DMAYIG 728
I Y+PQ + N + Y LK + + ++ ++
Sbjct: 73 RIGYLPQEF-----GVYPNF---TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 729 EKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQ--VARWILSNAIMGPHMLQ 784
+K + LSGG R R+ +A+A+ I ++D+ + +D + R +LS L
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-------LG 177
Query: 785 KTR--ILCTHNVQAISA-ADMVVVMDKGQVKWIG 815
+ R IL TH V+ + + + V V++KG++ + G
Sbjct: 178 EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 1e-09
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
Y N + L + L + KGS A+IG GSGKS+LL + G + T G +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 673 --------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSY------SETLKAC 710
+ V Q P + T+ ++ FG PQ++ +E + A
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG----PQNFGIPKEKAEKIAAE 126
Query: 711 TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
L+ MVG + + LSGGQ R+A+A + ++ +LD+ + +D + AR
Sbjct: 127 KLE-----MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK-AR 180
Query: 771 WILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+ H +T +L TH + ++ AD V +++KG + G+ +D+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
+N VSL + G +V +IG G+GK++L N I G + G++ G
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 674 ---IAYVPQVPWILSG-TIRDNILFGK-NYDPQSYSETLKACTLDVDISL--------MV 720
IA Q+ + G T+ +N+ G S + + V
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 721 G-GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G G++A NLS GQ+ RL +ARA+ + +LD+ + ++ + + I
Sbjct: 138 GLGELAD--RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 780 -PHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 811
T +L H+++ + AD +VV++ G+V
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHASG--------- 672
VVL+ VSL +PKG + ++IG G+GKS+LL S++ ++ G I G
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 673 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVD--ISLMVGGDMA 725
++ + Q I S T+RD + FG+ P S K ++ I + D++
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRF--PYSQGRLTKEDRRIINEAIEYLHLEDLS 129
Query: 726 --YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y+ E LSGGQR R +A + +D +LD+ L+ +D + + I+ L
Sbjct: 130 DRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 784 QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
KT ++ H++ S +D +V + G+V GS ++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 32/239 (13%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
Q I +VT+ ++ AL D +FT+ GG+ +VG G+GKS++ AL + G
Sbjct: 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 1280 QILVDGLNIINTPVRD-LRGRF-AVVPQS-------PFLFEGSLRDNLDPF-HMNDDLKI 1329
+I +I+ P R L+ A VPQS P L E + + + HM
Sbjct: 63 KI-----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMG----- 110
Query: 1330 WSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
W K ++ V A V + F S GQ++ + LARA+ + +V+ LDE
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 1386 ANVDAQT-ASI--LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQT 1441
VD +T A I L + E K M V T H + +V + ++ G ++ G +T
Sbjct: 171 TGVDVKTEARIISLLRELRDEGKTMLVST--HNLGSVTEFCDYTVMVKGTVLASGPTET 227
|
Length = 272 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--Q 679
Q+ V + VSL + KG + A++G G GKS+LL + G T G I G +++VP Q
Sbjct: 32 QHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 680 VPWIL---------SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
P + T+ NI FG D +E V+ L + + K
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI----ASRVNEMLGLVHMQEFAKRK 146
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQR R+ALAR++ + +LD+ + A+D ++ + + + T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 791 THNV-QAISAADMVVVMDKGQVKWIGS 816
TH+ +A++ A + +M++G+ IG
Sbjct: 207 THDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 17/208 (8%)
Query: 1245 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1304
+ + G +G++G GAGK+++L A+ L P G + V G VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 1305 QSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEK------CHVKEEVEAVGLETFVKESGI 1356
Q E + + H M+ L + V++ + VGL
Sbjct: 56 QR---HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHR 1415
S GQRQ + +ARAL VL LDE +D T +L G ++ H
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Query: 1416 ISTVLNMDEILILDHGHLVEQGNPQTLL 1443
++ + + ++L +G ++ G PQ L
Sbjct: 173 LAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ ++ Y PA L DIN T+E G + ++G +G GK+++LN + P G I
Sbjct: 1 MLQISHLYADY-GGKPA-LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL--RDNLDPFHMNDDLKIWSVLEKCHVK 1339
+DG PV VV Q+ EG L R+ D L +++ +
Sbjct: 59 TLDG-----KPVEGPGAERGVVFQN----EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA 109
Query: 1340 EEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
++ VGLE K S GQRQ + +ARAL + ++L LDE +DA T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1399 AISS--ECKGMTVITIAHRISTVLNMDEILIL---DHGHLVE 1435
+ + G V+ I H I + M L+L G +VE
Sbjct: 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1291
A+ D++ + I+G +G GKS++L ++ R+ + G+IL+D +I +
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1292 -PVRDLRGRFAVVPQSPFLFEG-SLRDN-LDPFHMNDDLK-------IWSVLEKCHVKEE 1341
PV +R R +V Q P F S+ DN + + +N + + S L++ + +E
Sbjct: 79 DPV-SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
V+ +K + + S GQ+Q +C+AR + +V+ +DE + +D + ++ I
Sbjct: 138 VK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 1402 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+ T+I + H + + D G LVE G + +
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT------------PICGGQILVDGL 1286
AL ++ I + ++G +G GKS+ L L R+ + G I DG+
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 1287 NIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---------------------DPFHMND 1325
N++ +LR R +V QSP F S+R+N+ D D
Sbjct: 120 NLV-----ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 1326 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+L + L + + +EV + ++ + S GQ+Q +C+AR L +V+ +DE
Sbjct: 175 EL-VERSLRQAALWDEVN-----DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE--ILILDHGHLVEQGNPQTLL 1443
+ +D S +++ I + TV+ + H + + + + L G LVE + +
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1444 QD 1445
++
Sbjct: 289 EN 290
|
Length = 305 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
A ++FT+ G + + G G+GK+++L L L+P G++L++G P+ R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-----GPLDFQR 68
Query: 1298 GRFAVVPQSPFLFEG---------SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGL 1347
A L+ G S+ +NL +H + D ++ L + VGL
Sbjct: 69 DSIA----RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR---------VGL 115
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-- 1405
F S GQ++ + LAR LL + LDE T +D + A++ C
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 1406 GMTVITIAH 1414
GM V+T
Sbjct: 176 GMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 1220 QGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
+ F + + P AL DI+F G ++G GAGKS++L L
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 1278 GGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLK-IWSVLE 1334
G IL+DG + L A++ Q L E ++ +NL + + L
Sbjct: 58 AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL 117
Query: 1335 KCHVKEEVEAVGL----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+E++E +G+ +T +K S+GQRQ++ +A+AL ++++V+ DE T+++ A
Sbjct: 118 NYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1391 QTASILQNAISS-ECKGMTVITIAHRISTVLNMDEI 1425
+ L I +G ++ ++HR M+EI
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHR------MEEI 203
|
Length = 501 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN-ALFRLTP--IC 1277
G++ +NV++R S L ++NFTI G V ++G +G GKS++L+ + L C
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1336
G++ ++ + P + + ++ Q LF S+ NL F + LK +
Sbjct: 59 TGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNL-LFALPATLK--GNARRN 113
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
+E GL+ + + S GQR + L RALL K L LDE + +D
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173
Query: 1397 QNAISSECK--GMTVITIAH 1414
+ + SE + G+ + + H
Sbjct: 174 RQWVFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 60/234 (25%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 674
+Y + L ++L +PK + A+IG G GKS+LL L M G +
Sbjct: 16 YYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEV 69
Query: 675 AY---------------------VPQVPWILSGTIRDNILFG------KNYDPQSYSET- 706
V Q P +I DN+ +G K+ + E+
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 707 LKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764
LK L +V L + + LSGGQ+ RL +ARA+ ++ ++D+ SA+
Sbjct: 130 LKKAALWDEVKDRL---------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 765 D----AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
D ++ I L+K T ++ THN+ QA +D G++
Sbjct: 181 DPISTLKIEELITE--------LKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----------------HA 670
LN VSL +P G + VIG G+GKS+L+ + T GS+ A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 671 SGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
I + Q +LS T+ N+ D E + T ++ +VG +G+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT---ELLALVG-----LGD 132
Query: 730 KG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
K NLSGGQ+ R+A+ARA+ + + D+ SA+D + IL L
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 786 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
T +L TH + + D V V+ G++ G+ +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1280
++EF+NV+ Y L D++F I+ G ++ IVG GAGKS++L L L P+ G
Sbjct: 321 VLEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ + + I Q RD LDP D + + E +
Sbjct: 380 KVGETVKI------------GYFDQH--------RDELDP----DKTVLEELSEGFPDGD 415
Query: 1341 EVEAVG-LETF------VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
E E L F ++ S G++ + LA+ LL+ +L LDE T ++D ++
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 1394 SILQNAISSECKGMTVITIAH 1414
L+ A+ + +G TV+ ++H
Sbjct: 476 EALEEAL-LDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-- 657
SK++ + +Q+ T S Y E +NV + +P+G + A+IG G GKS++L S+
Sbjct: 8 ISKNIIISLQNVTIS-YGTFEAVKNVFCD-----IPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 658 ---LGEMMLTHGSIHASGSIAYVPQV---------------PWILSGTIRDNILFGK--- 696
L E G + G+ Y P+V P +I +NI FG
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 697 ----NYDPQSYSETLKACTLD--VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750
+ D KA D D + E G +LSGGQ+ RL +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADM 802
++ ++D+ SA+D ++ + + H L+K T ++ THN+ QA+ +DM
Sbjct: 172 EPEVILMDEPCSALDP-ISTLKIEETM---HELKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 15/219 (6%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILV--DGLNIINT 1291
AL +IN + ++G +G GKS+ L R+ + G+I++ D +NI++
Sbjct: 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 1292 PVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1349
V ++R R ++V Q P F S+ +N+ +K S+LE+ V+ + L
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAALWD 149
Query: 1350 FVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
VK+ + S GQ+Q +C+ARAL ++L DE T+ +D + ++ IS
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209
Query: 1406 GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+T++ + H + + D + G L+E G T+
Sbjct: 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1291
AL +IN I I+G +G GKS+ + L R L P G+IL NI +
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAV---- 1345
V +LR +V Q P F S+ DN+ P KI + +K + E VE
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGP-------KIHGIKDKKTLDEIVEKSLRGA 151
Query: 1346 ----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
L+ + ++ S GQ+Q +C+AR L V+ +DE T+ +D + ++ +
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 1402 SECKGMTVITIAH 1414
K ++I + H
Sbjct: 212 ELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + VT + A+ +I+F + G G++G GAGK++ + L G+I
Sbjct: 3 LEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1339
+G ++ +++ R +P+ E L + D LK + L K ++
Sbjct: 61 WNGGP-LSQEIKN---RIGYLPE-----ERGLYPKMTVE---DQLKYLAELKGMPKAEIQ 108
Query: 1340 EEVEAVGLE----TFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
++++A LE K I S G +Q I A++ ++L LDE + +D
Sbjct: 109 KKLQAW-LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1395 ILQNAI-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1441
+L++AI + +G T+I +HR+ V + D +L+L G V G +
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1291
A+ D+N IE + +G +G GKS++L L R+ + G++L+DG ++
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1292 -PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AV 1345
PV +R +V Q P F S+RDN+ LK+ V K + E VE
Sbjct: 79 DPV-AVRRTIGMVFQRPNPFPTMSIRDNVVA-----GLKLNGVRNKKDLDELVEKSLRGA 132
Query: 1346 GLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1386
L VK+ G S GQ+Q +C+ARA+ VL +DE C+A
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
|
Length = 258 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRD 1295
A++D+NF++ G +GIVG +G+GKS AL L GG +G I+N P ++
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90
Query: 1296 L-RGR---FAVVPQSPFLFEGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEE--------V 1342
L + R +++ Q P +L+P+ + + L +L K K E +
Sbjct: 91 LNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1343 EAVGLETFVKESGI---SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASI 1395
+AV + K + FS G RQ + +A ALL K+L DE T +D AQ ++
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
L N + E +I I H + V + D++L++ G +E GN
Sbjct: 204 L-NELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 45/221 (20%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 672
VS L +G +A+IGE GSGKS+L + G + T G I +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 673 -----SIAYVP--QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG--GD 723
+ + P ++ IL +R N + +P+ + + TL MVG D
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLN----TDLEPEQRRKQIFE-TLR-----MVGLLPD 141
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A L+ GQ+ R+ALARA+ I + D+ L+++D + R L N ++ +
Sbjct: 142 HANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLDMSM-RSQLINLML--ELQ 196
Query: 784 QKTRILCTHNVQAISA----ADMVVVMDKGQVKWIGSSADL 820
+K I + Q I +D V+VM +G+V GS+AD+
Sbjct: 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L +SL +P+GS A++G G+GKS+LL + G + G + G
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + S T+ D++ FG P + V+ +L + +
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG----PVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+LS GQ+ R+A+A + D+ +LD+ ++ +D + ++ + H KT I+ T
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVAT 195
Query: 792 HNVQ-AISAADMVVVMDKGQV 811
H+V A AD V+V+ +G+V
Sbjct: 196 HDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 620 EEEQNV-VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
E+E +V LN VS + KG V++IG+ GSGKS+ I G G + G
Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74
Query: 674 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P + T+ D++ FG E +K VD +L+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR----VDEALLAVNM 130
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMG 779
+ + + LSGGQ+ R+A+A + +I +LD+ S +D ++ R I + I
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI--HEIKE 188
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
+ L T + TH++ +++D ++VM G++
Sbjct: 189 KYQL--TVLSITHDLDEAASSDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
+LN +S L G + G G GKS+LL + + T G++ G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 674 ---IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
++Y Q P + T+ DN++F + DP + + L+ L I
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL-------- 131
Query: 726 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
K + LSGG++ R++L R + + +LD++ SA+D ++ I Q
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH-NVNEIIHRYVREQ 187
Query: 785 KTRIL-CTHNVQAISAADMVVVM 806
+L TH+ I+ AD V+ +
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL ++L + G +V + G GSGK++LL I G + GS+ G
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+I Y+ Q +L T R N+ P + + + ++ +G + Y
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 785
NLSGGQ+ R+A+ARA+ H + + D+ +A+D++ R ++ ++QK
Sbjct: 140 H---NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-------LMQKLAR 189
Query: 786 ----TRILCTHNVQAISAADMVVVMDKGQVK 812
T ++ TH+ + + AD +V M+ G++
Sbjct: 190 EQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
D++FT+ G + I G GAGK+++L L L G++ G I N
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------- 72
Query: 1302 VVPQSPFLFEG---SLRDNLDPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETFVKES 1354
L+ G ++ L ++L W + E + VGL
Sbjct: 73 --YHQALLYLGHQPGIKTELTAL---ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
S GQ++ + LAR L + + LDE +D + ++L +++ G+ ++T
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 48/236 (20%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L ++ G + I+G +G+GKS+ L + L G I+V+G I VRD G+
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI--NLVRDKDGQ 78
Query: 1300 FAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWS---VLEKCHVKEEVEAVGL------- 1347
V ++ LR L H N +WS VLE ++ ++ +GL
Sbjct: 79 LKVADKNQL---RLLRTRLTMVFQHFN----LWSHMTVLENV-MEAPIQVLGLSKQEARE 130
Query: 1348 --ETFVKESGIS----------FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1391
++ + GI S GQ+Q + +ARAL +VL DE T+ +D +
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1392 TASILQNAISSECKGMTVIT----IAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443
I+Q ++ E K M V+T A +S+ ++ L G + E+G P+ L
Sbjct: 191 VLRIMQQ-LAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 40/221 (18%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPICGGQILVDGLNIINTPVRDL 1296
L+D++ +E G + I+G +G+GK+++L+A+ GQIL +G +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK- 81
Query: 1297 RGRFAVVPQSPFLFEG-SLRDNLD-------PFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1348
A V Q L G ++R+ L P +D ++ K+ VE V L
Sbjct: 82 --CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----------KKRVEDVLLR 129
Query: 1349 ---------TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
VK GI S G+R+ + +A LL KVL LDE T+ +D+ TA L +
Sbjct: 130 DLALTRIGGNLVK--GI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 1400 ISSECK-GMTVITIAHRI-STVLNM-DEILILDHGHLVEQG 1437
+S + VI H+ S + + D IL+L G +V G
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 41/245 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1278
++ F V+ Y ALH+++ I G V ++G GAGK+++L L CG
Sbjct: 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL------CGDPR 56
Query: 1279 ---GQILVDGLNIINTPV-RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1333
G+I+ DG +I + + +R A+VP+ +F ++ +NL M
Sbjct: 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL---AMGGFFA----- 108
Query: 1334 EKCHVKEEVEAVG------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
E+ +E ++ V E ++ +G + S G++Q++ + RAL+ ++L LDE +
Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Query: 1388 VDAQTASILQNAISSECK-----GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1441
+ A I+ I + GMT+ + + L + D +L++GH+V +
Sbjct: 168 L----APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223
Query: 1442 LLQDE 1446
LL +E
Sbjct: 224 LLANE 228
|
Length = 237 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301
++ + G + +VG GAGKS++L + L P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1302 VVPQSPFLFEGSLRDNLDPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
+ Q F + F D + + E EA+GL+ + S
Sbjct: 74 LSQQQTPPF------AMPVFQYLTLHQPDKTRTEAVAS-ALNEVAEALGLDDKLGRSVNQ 126
Query: 1358 FSVGQRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTV 1409
S G+ Q + LA +L+ + ++L LDE ++D + L +S C +G+ V
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 1410 ITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1446
+ +H ++ L + D + +L G L+ G +L E
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 20/206 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPIC- 1277
++ +N+ + Y L A+ ++ I +G +G GKS+IL N L L P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1278 -GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1328
G++ G N+ V ++R R +V Q P F S+ DN+ + + + D
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ L + + +EV+ +K+SG+S S GQ+Q +C+ARA+ +V+ +DE + +
Sbjct: 128 VERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
Query: 1389 DAQTASILQNAISSECKGMTVITIAH 1414
D + ++ + + T+I + H
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 43/203 (21%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
++ VS + +G + ++GE G GKS+L ILG T G I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGVNLSGGQRARLAL 744
+ GK+ S E + L++ + + + Y E LSGGQR R+ +
Sbjct: 71 -----LFEGKDITKLSKEERRER-VLELLEKVGLPEEFLYRYPHE----LSGGQRQRIGI 120
Query: 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR----ILCTHN---VQAI 797
ARA+ + + D+ +SA+D V IL N + LQ+ + +H+ V+ I
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQIL-NLLKD---LQEELGLTYLFISHDLSVVRYI 176
Query: 798 SAADMVVVMDKGQVKWIGSSADL 820
S D + VM G++ IG + ++
Sbjct: 177 S--DRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
++ V+ + +G + +G G+GK++ + + + T G+ +G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 673 SIAYVPQ---VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
SI VPQ V L+G R+N+ + G+ Y + + L+ ++
Sbjct: 67 SIGIVPQYASVDEDLTG--RENLEMMGRLYG---LPKDEAEERAE---ELLELFELGEAA 118
Query: 729 EKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
++ V SGG R RL +A ++ H D+ LD+ + +D + R + + I T
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR-AIWDYIRALKEEGVTI 177
Query: 788 ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+L TH + +A D + ++D G++ G+ +L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ-VP 681
+L VSL L G + ++G G+GKS+LL + GE+ G + + Y+ Q P
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76
Query: 682 WILSGTIRDNIL--FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV------- 732
T+ D ++ FG+ + + E A D D L+ + G
Sbjct: 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 733 ----------------NLSGGQRARLALARAVYHGSDIYMLD 758
+LSGG R R+ALARA+ D+ +LD
Sbjct: 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
|
Length = 530 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-LGEM----MLTHGSIHASGSIAYVP 678
VL+ + L + G +VA+IG GSGK++LL I L E + G I + +
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 679 Q----------VPWILSG-------TIRDNILFG----KNYDPQSYSETLKACTLDVDIS 717
Q V ++ T+ +NI+ G K + + + V ++
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
G + +Y LSGGQ+ R+A+ARA+ ++ + D+ SA+D ++ +L N I
Sbjct: 136 ---GKETSYPRR----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTI 187
Query: 778 MGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 811
++T ++ TH + A AD + MD+G++
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
Length = 250 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 5e-09
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P + E + V + Y L AL D++ I + +G +G GKS++L R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1278 GGQILVDGLNIINTPVRD-------LRGRFAVVPQSPFLFEGSLRDNL------DPFHMN 1324
G + L + + D LR + +V Q P F S+ +N+ + + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1325 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
D + L + + EEV+ +KE G + S GQ+Q +C+ARA+ VL +DE
Sbjct: 134 LDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRI 1416
+ +D + ++ + T+I + H +
Sbjct: 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----C 1277
IE N+ + Y + + ++ I ++G +G GKS++L RL +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1278 GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEG-SLRDN----------LDPFHMN 1324
G++ + G NI + V ++R +V Q P F ++ DN +
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1325 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
D+ W+ L+K + +EV+ + + + S GQRQ + +ARAL K+L +DE
Sbjct: 123 DERVEWA-LKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQG 1437
TAN+D + ++ + K T++ + H R+S D + L G L+E G
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS-----DYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+N VSL + G +V ++G G+GK++ I+G + G I A
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 672 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I Y+PQ I T+ DNI+ K+ E L A + I+
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-------H 131
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI--LSNAIMG 779
K +LSGG+R R+ +ARA+ +LD+ + VD + R I L + +G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 780 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
+L T HNV + + D ++ G+V GS ++
Sbjct: 192 --------VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-09
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 55/231 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ VSL + G + A++GE G+GKS+L+ + G G I G
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGK---------NYDPQSYSETLKACT---LDV 714
IA V Q VP + ++ +NI G+ + + LD+
Sbjct: 82 AAGIATVHQELSLVPNL---SVAENIFLGREPTRRFGLIDRK-AMRRRARELLARLGLDI 137
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
D +VG +LS QR + +ARA+ + + +LD+ +A+ + L
Sbjct: 138 DPDTLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-RLF 185
Query: 775 NAIMGPHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
+ I L+ I +H + + AD + V+ G + +G+ A
Sbjct: 186 DLI---RRLKAQGVAIIYISHRLDEVFEIADRITVLRDG--RVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRGR 1299
D++F++ G +G+ G GAG++ ++ ALF P G + ++G + I P + +R
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 1300 FAVVPQS-------PFLFEGS--LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
A+VP+ P L G L F ++I + E + ++ + ++T
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK--MRIDAAAELQIIGSAIQRLKVKTA 395
Query: 1351 VKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAISSECKG 1406
I S G +Q LA+ LL + +VL LDE T VD I L N ++ E G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--G 453
Query: 1407 MTVITIAHRISTVLNM-DEILILDHGHL 1433
+ +I ++ ++ VL + D +L++ G L
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L+ +S L +GS VA++G GSGKS+L+ + + G+I +G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
++ V Q P + T+ ++ FG KN+ +SE +A + VG
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED-EAKEKALKWLKKVGLSEDL 138
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
I + LSGGQ R+A+A + + +I LD+ + +D + R + T
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE-GRKEMMQLFKDYQKAGHT 197
Query: 787 RILCTHNVQAISA-ADMVVVMDKGQV 811
IL THN+ ++ AD V+V++ G++
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 39/218 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
VL+ ++ + G VA+IG GSGKS++L ++ + G I G Y
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 677 VPQVPWILSGTIRDNI--LFGKNYDPQSYSETLKACTLD--VDISLMVGG---------- 722
VP L +R+ I +F QS++ LD + ++V G
Sbjct: 75 VPADEKHLR-QMRNKIGMVF------QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA 127
Query: 723 ----DMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
DM + +K LSGGQ+ R+A+ARA+ + + D+V SA+D ++ +L+
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 811
T +L TH + A AD V DKG++
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG----------S 673
+L VS G L A++G G+GKS+LLN++ G G + +G
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
I YVPQ D+IL TL V +LM + +G
Sbjct: 84 IGYVPQ----------DDILHP---------------TLTVRETLMFAAKL-----RG-- 111
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGG+R R+++A + + LD+ S +D+ A ++S + +T I H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQ 170
Query: 794 VQA--ISAADMVVVMDKGQV 811
+ D ++++ +G+V
Sbjct: 171 PSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 22/209 (10%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
DIN I G V VG +G GKS++L + L I G + + + + P + RG
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-RG-VG 78
Query: 1302 VVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG----LETFVKE 1353
+V QS P L S+ +N M+ LK+ +K + + V V L +
Sbjct: 79 MVFQSYALYPHL---SVAEN-----MSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDR 129
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
+ S GQRQ + + R L+ V LDE +N+DA ++ IS K G T+I
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 1412 IAHRISTVLNM-DEILILDHGHLVEQGNP 1439
+ H + + D+I++LD G + + G P
Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
Length = 369 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASG 672
+EEQNV + V+ ++ E GSG+ S + G+++L I
Sbjct: 1244 GDEEQNVGMKNVNE-------FSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296
Query: 673 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + + +I +NI FGK + + K +D I + +G G
Sbjct: 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+LSGGQ+ R+A+ARA+ I +LD+ S++D+ + I + KT I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 792 HNVQAISAADMVVVMD 807
H + +I +D +VV +
Sbjct: 1417 HRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-------------ASG 672
VL+ V L + +GSLV ++G G+GK++LL +I G + T G++ AS
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 673 SIAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+A VPQ + +R + G+ + + V+ ++ G +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSNAIMGPHMLQ 784
+LSGG+R R+ LARA+ + + +LD+ +++D ++ R ++ +
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG-------- 189
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
KT + H++ A D +V++ G+V+ G AD+
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M +I C Y ++E LN ++ P+ S +AVIG G+GKS+L G +
Sbjct: 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 664 THGSIHASGS-------------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLK 708
T GS+ G + V Q P I S T+ +I FG P + +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG----PINLGLDEE 112
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V +L + G +LSGG++ R+A+A + + +LD+ + +D Q
Sbjct: 113 TVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172
Query: 769 ARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
+ ++ P T I TH + + AD + VMDKG++ G+ ++
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 39/253 (15%)
Query: 1220 QGLIEFQN--VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-- 1275
Q L+ +N V R + ++ ++D++ IE G + +VG +G+GKS ++ RL P
Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 1276 ---ICGGQILVDGLNIINTPVRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1328
G I G ++++ + LRG + A++ Q P + +L+P H + +
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLH-TLEKQ 114
Query: 1329 IWSVLEKCHVKEEVEAVGLETF--VKESGI------------SFSVGQRQLICLARALLK 1374
++ VL H EA E + GI S G+RQ + +A ALL
Sbjct: 115 LYEVLS-LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173
Query: 1375 SSKVLCLDECTANVDAQT-ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDH 1430
++L DE T +D A ILQ + E M ++ I H +S V + D + ++ +
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 1431 GHLVEQGNPQTLL 1443
G VEQ TL
Sbjct: 233 GRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-08
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 13/263 (4%)
Query: 1184 TETEKEMVSLERVLEYMDVPQE----ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1239
T E+ + E + E M+ P+ ++ P G+ +N+ ++PS A
Sbjct: 888 TREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGL-VPGVC-VKNLVKIFEPSGRPA 945
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
+ +N T +G GAGK++ L+ L L P G +LV G + I T + +R
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD-IETNLDAVRQS 1004
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE--VEAVGLETFVKESGIS 1357
+ PQ LF F+ + W E+ ++ E +E GL E
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S G ++ + +A A + +KV+ LDE T+ VD + + + + G T+I H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 1418 TV-LNMDEILILDHGHLVEQGNP 1439
L D I I+ G L G P
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 20/232 (8%)
Query: 1222 LIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
L+E +++ Y PS L I+ I G V IVG +G+GKS+++N L L
Sbjct: 4 LLELKDIRRSY-PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 1279 GQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1333
G V G ++ L R F F+F+ L +L + +++ L
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFG------FIFQRYHLLSHLTAAQNVEVPAVYAGL 116
Query: 1334 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
E+ + +GLE V+ S GQ+Q + +ARAL+ +V+ DE T +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1390 AQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1440
+ + + + +G TVI + H + ++ + G +V Q
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVPW- 682
L VS +PKG V + G G+GKS+LL I GE T G I +G ++ + ++P+
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 683 -------------ILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ T+ +N+ GK P+ + LD +VG
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP--PREIRRRVSE-VLD-----LVG--- 126
Query: 725 AYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ I+
Sbjct: 127 --LKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183
Query: 781 HMLQKTRILCTHNVQAISAADM---VVVMDKGQV 811
+ L T ++ TH+++ + M V+ ++ G++
Sbjct: 184 NRLGTTVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L VS +PKG +++G GSGKS++ ++G + G I +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSET---LKACTLDVDISLMVGGDMAYIG 728
I V Q P + ++ ++ FG Y E + VD+ +
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-------LERAD 137
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 787
+ LSGGQ+ R+A+A + + +LD+ S +D AR L + + ++
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-ARQNLLDLV---RKVKSEHN 193
Query: 788 ---ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I TH++ AD V+VM+KG V G+ ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------------LGEMMLTHGSIHAS 671
V+L+ ++L + KG + A+IGE GSGKS+LLN I G+ S AS
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 672 ----GSIAYVPQ-VPWILSGTIRDNILFGKNYDPQSYSETLKA---CTLDVDISLMVGGD 723
+ Y+ Q I + T+ +N+ G Y S E + V ++L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL----- 126
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ +K LSGG++ R+ALARA+ + + D+ ++D + + ++ +L
Sbjct: 127 --KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVL-DLLL 178
Query: 784 Q-----KTRILCTHNVQAISAADMVV 804
+ KT I+ TH+ + AD V+
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 616 YCNNEE-EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 672
Y +NEE + + L+ V+L + KG + ++G GSGKS++ + ++ + G ++ G
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 673 ------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
V Q P I++ + +++ FG P++ + VD SL
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG----PENLGIPPEEIRERVDESL 129
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
G Y LSGGQ+ R+A+A + + + D+ + +D R ++ N I
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIK 188
Query: 779 GPHMLQK----TRILCTHNVQAISAADMVVVMDKGQVKWIGS 816
L K T IL TH ++ AD ++VMD G+V G+
Sbjct: 189 E---LNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 56/221 (25%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+LN +SL LP G + A+IG G GKS+LL + G++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN-----------YDPQSYSETLKACTLDVDISLMV 720
+A +PQ G T+R+ + +G++ D ++ ++ ++
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN------- 129
Query: 721 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--QVARWILSNAI 777
+A ++ + +LSGGQR R LA + + + +LD+ + +D QV +
Sbjct: 130 --HLA---DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV-------EL 177
Query: 778 MGPHMLQ------KTRILCTHNV-QAISAADMVVVMDKGQV 811
M +++ KT + H++ QA D +VV+ G V
Sbjct: 178 MR--LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216
|
Length = 255 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG----------EMMLTHGSIHAS 671
Q+ L+ V L + G +VA++G GSGKS+LL + G + L ++
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 672 GSIA-----------YV-PQVPWILSGTIRDNILFG------------KNYDPQSYSETL 707
G +A Y+ Q + ++ +N+L G + + L
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 708 KACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
+A T VG M + + V+ LSGGQ+ R+A+ARA+ + + + D+ ++++D
Sbjct: 135 QALT-------RVG--MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSS 817
+ AR ++ T ++ H V A+ + +V + +G V + GSS
Sbjct: 186 ESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
Length = 262 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 43/227 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
Q V +N VSL + +G + ++G GSGKS+LL I + T G + G
Sbjct: 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKE 95
Query: 673 --------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
S A +P T+ +N+ FG +E + ++
Sbjct: 96 LRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALE--- 146
Query: 719 MVG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+VG Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + +
Sbjct: 147 LVGLEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI-RREMQD 201
Query: 776 AIMGPH-MLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ LQKT + TH++ +A+ D + +M G++ +G+ ++
Sbjct: 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1293
L +N T++ G I+G G+GKS++ + + +T G+IL DG +I+
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT---EGEILFDGEDILELSPD 76
Query: 1294 -RDLRGRFAVVPQSPFLFEG-SLRDNL----------DPFHMNDDLKIWSVLEKCHVKEE 1341
R G F + Q P G + D L ++ E + EE
Sbjct: 77 ERARAGIF-LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
LE +V E FS G+++ + + LL K+ LDE + +D I+ I+
Sbjct: 136 F----LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 1402 S-ECKGMTVITIAH--RISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
+ +G V+ I H R+ + D++ +L G +V+ G+P+ + E
Sbjct: 189 ALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELE 236
|
Length = 251 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL+ +SL + KG + +G G+GK++ + ILG + G I G
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74
Query: 686 GTIRDNILFGKNYDPQSYSETLKA-CTL------DVDISLMVGGDMAYIGEKGVNLSGGQ 738
G + + F Y + E L+ L +D L V G +K S G
Sbjct: 75 GALIEAPGF---YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGM 131
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARW----ILSNAIMGPHMLQKTRILCTHNV 794
+ RL +A A+ D+ +LD+ + +D + ILS G +L + +L +
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL--SEI 189
Query: 795 QAISAADMVVVMDKGQVKW 813
Q + AD + +++KG++
Sbjct: 190 QKV--ADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-08
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 72/213 (33%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ Y L L DI+ TI G ++G+VGR GAGKS+ L +L I G
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKST----LLKL--IAGELEP 52
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+G + Q
Sbjct: 53 DEG-----IVTWGSTVKIGYFEQ------------------------------------- 70
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
S G++ + LA+ LL++ +L LDE T ++D ++ L+ A+
Sbjct: 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 1403 ECKGMTVITIAH-R--ISTVLNMDEILILDHGH 1432
G TVI ++H R + V +I+ L+ G
Sbjct: 116 Y-PG-TVILVSHDRYFLDQVAT--KIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I F++V+ Y AL + F + G + G +GAGKS++L + + G+I
Sbjct: 1 MIRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1282 LVDGLNII---NTPVRDLRGRFAVVPQSP-FLFEGSLRDNLD-PFHM----NDDLKIWSV 1332
G +I N V LR + ++ Q L + ++ DN+ P + DD++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--- 116
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1391
V ++ VGL K I S G++Q + +ARA++ VL DE T N+D A
Sbjct: 117 ----RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHLV 1434
+ IL+ G+TV+ H I + +L L GHL
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+ +NV++ + L D++ ++ G + ++G GAGKS+++ + L G I
Sbjct: 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQS-------PFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
R+ + R VPQ P LR L P +D I L+
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALK 106
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQT 1392
+ ++A K SG G+ Q + LARALL ++L LDE T VD Q
Sbjct: 107 RVQAGHLIDA----PMQKLSG-----GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1393 ASI-LQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQ 1440
A L + + E V+ ++H + V+ DE+L L+H H+ G P+
Sbjct: 158 ALYDLIDQLRREL-DCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205
|
Length = 251 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ Q V Y + I+ + G + +VG +G GKS++L + L I G+I
Sbjct: 4 LKLQAVRKSYDGKTQV-IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 1283 VDGLNIINT--PV-RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
+ G ++N P RD+ A+V Q+ L+ S+R+N M LKI + K +
Sbjct: 63 IGG-RVVNELEPADRDI----AMVFQNYALYPHMSVREN-----MAYGLKIRGM-PKAEI 111
Query: 1339 KEEVEAV----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+E V LE + S GQRQ + + RA+++ V DE +N+DA
Sbjct: 112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 49/203 (24%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG-- 672
L +S+ + + S+VA IG G GKS+ L N ++ GE+ + +I+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 718
++ V Q P +I +N+ +G + Q ETLK L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILS 774
+ E LSGGQ+ RL +ARA+ + ++D+ SA+D A+V I
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI-- 189
Query: 775 NAIMGPHMLQK--TRILCTHNVQ 795
H L+K T ++ THN+Q
Sbjct: 190 ------HELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
+Y +EQ L+ VS+ +P+ + A+IG G GKS+ L I L + G +
Sbjct: 48 FY---GDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102
Query: 670 ASGSIAY---------------VPQVPWILSGTIRDNILFG-------KNYDPQSYSETL 707
G Y V Q P +I DN+ +G + D + E+L
Sbjct: 103 FRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESL 161
Query: 708 KACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ L +V L G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 162 RRAALWDEVKDQL---------DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 766 AQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
I ++ + T ++ THN+Q
Sbjct: 213 PVATSKI--EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1278
I+ ++++ Y S A+ I+ I I+G +G GKS+ + L R++ + G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1279 -GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G + G NI + + LR + +V Q P F S+ +N+ ++I + L +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1336 CHVKEEVEAV----GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ E VE+ L VK+ S + S GQ+Q +C+ARAL KVL +DE +
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1388 VDAQTASILQNAISSECKGMTVITIAHRI 1416
+D ++ I S +T+ + H +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 8/208 (3%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI---INTPVRDLRG 1298
+I+ T+ G I+G +G GK+++L + G+IL DG NI + + +R
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
Query: 1299 RFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
R +++ QS LF + ++ DN+ + + + ++ + L V ++EAVGL K
Sbjct: 85 RMSMLFQSGALFTDMNVFDNV-AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHR 1415
S G + LARA+ ++ DE D T +L IS + G+T + ++H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 1416 ISTVLNM-DEILILDHGHLVEQGNPQTL 1442
+ VL++ D I+ +V G+ Q L
Sbjct: 204 VPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL----GEMMLTHGSIHAS-------- 671
LN SL K + VIG GSGKS+++ N ++ G+ ++ +I A+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 672 ---GSIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
I V Q P + TI +I FG ++ E K + +V Y
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLK---LVQLPEDY 143
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQ+ R+ALA + + +LD+ +D + + N + K
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKK 202
Query: 787 R-ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE 844
R I+ THN+ Q + AD V+VM +G+V IGS ++ +S E T + + +
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI--------FSNQELLTKIEIDPPK 254
Query: 845 M-RTNASSANKQILLQEKDVVSVSDDAQEIIEV 876
+ + NK I L K++ ++ + A+E+ +V
Sbjct: 255 LYQLMYKLKNKGIDLLNKNIRTIEEFAKELAKV 287
|
Length = 289 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M + ++ +C E + + + +S L G + + G G+GK++LL + G +
Sbjct: 1 MMLEAENLSC------ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP 54
Query: 664 THGSIHASGS-IAYVPQVP-----WI--LSG-----TIRDNILFGKNYDPQSYSETLKAC 710
G ++ G I V + ++ G T +N+ F + + + T+
Sbjct: 55 DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEA 114
Query: 711 TLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-V 768
V +A + + V LS GQ+ R+ALAR + +++LD+ +A+D + V
Sbjct: 115 LAQVG--------LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
Query: 769 ARWILSNAIMGPHMLQKTRILCT 791
A A+M H Q +L T
Sbjct: 167 ALL---TALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHAS 671
+ + V L +PK + A IG G GKS++L N ++ G++ +++A
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 672 G--------SIAYVPQVPWILSGTIRDNILFGK-------NYDPQSYSETLKACTL--DV 714
I V Q P +I DNI +G + D + +L+ L +V
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD-ELVERSLRQAALWDEV 141
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
L + G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D I
Sbjct: 142 KDKLK---------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-- 190
Query: 775 NAIMGPHMLQKTRILCTHNV-QAISAADM 802
+M Q T I+ THN+ QA +DM
Sbjct: 191 EELMHELKEQYTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLRG 1298
++D++FT+ G +G+ G GAG++ ++ L+ P G + +DG + +P L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1299 RFAVVPQSP----FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-------L 1347
+ + + S+++N+ + + L+ +E +AV +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKH---ADEQQAVSDFIRLFNI 384
Query: 1348 ETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSE 1403
+T E I S G +Q + +AR L+ KVL LDE T VD I Q N +E
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHL-----VEQGNPQTLL 1443
G+++I ++ + VL M D IL++ G + EQ + L+
Sbjct: 445 --GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488
|
Length = 501 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 63/260 (24%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 7 LEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1283 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1329
V+G I +D LR R +V Q F NL HM
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-F--------NLWS-HM------ 108
Query: 1330 WSVLE-------------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARAL 1372
+VLE K E E VG+ S GQ+Q + +ARAL
Sbjct: 109 -TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
Query: 1373 LKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVIT----IAHRISTVLNMDE 1424
+V+ DE T+ +D + ++Q ++ E + M V+T A +S+
Sbjct: 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQ-DLAEEGRTMVVVTHEMGFARDVSS-----H 221
Query: 1425 ILILDHGHLVEQGNPQTLLQ 1444
++ L G + E+G P+ +
Sbjct: 222 VIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRG 1298
D++F++ G +GI G GAG++ ++ LF P G+I +DG + I P + +
Sbjct: 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMN----------DDLKIWSVL----EKCHVKEEVEA 1344
A+VP E RD + P M D S + E + E ++
Sbjct: 339 GIAMVP------EDRKRDGIVPV-MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR 391
Query: 1345 VGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAI 1400
+ ++T E I S G +Q LA+ LL + K+L LDE T +D I L N +
Sbjct: 392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 1401 SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ G+ +I I+ + VL + D +L++ G L
Sbjct: 452 VQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
++ ++ V+ +G A++G+ GSGKS+L+ +I + T G++
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 673 -------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGG 722
I V Q P + T+ I+FG KN+ + +K + + L
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVKNYAHRLLMDLGFSR 136
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
D+ + + +SGGQ ++A+ + DI +LD+ + +D Q R ++ +
Sbjct: 137 DV--MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-------L 187
Query: 783 LQ-------KTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
L+ KT IL +H++ ++ AD V+VM +G + S +L
Sbjct: 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 60/247 (24%), Positives = 116/247 (46%), Gaps = 30/247 (12%)
Query: 1222 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+I+ +NV+ RY + A+ +++ ++ G GIVG +GAGK+++ + +
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 1279 GQILV---DGLNIINTPVRDLRGR----FAVVPQSPFLF-EGSLRDNL---------DPF 1321
G++ V D + P D RGR ++ Q L+ ++ DNL D
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398
Query: 1322 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+K L+ EE L+ + E S G+R + LA+ L+K +++ L
Sbjct: 399 AR---MKAVITLKMVGFDEEKAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVIL 451
Query: 1382 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
DE T +D T + ++I + E T I ++H + VL++ D ++ G +V+ G+
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
Query: 1439 PQTLLQD 1445
P+ ++++
Sbjct: 512 PEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP-----Q 679
L + +G VA++G G+GKS+LLN I G + GS+ H + + P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 680 VPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ S T+ NI G +P + L I+ +G + + LSGGQ
Sbjct: 79 ENNLFSHLTVAQNIGLG--LNPGLKLNAAQREKLH-AIARQMGIE-DLLARLPGQLSGGQ 134
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ-AI 797
R R+ALAR + I +LD+ SA+D + + +L+ Q T ++ +H+++ A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194
Query: 798 SAADMVVVMDKGQVKWIGSSADL 820
A +V+ G++ W G + +L
Sbjct: 195 RIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-08
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 619 NEEEQNVV-LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS- 673
+ V+ ++ SL + +G + ++G GSGKS+LL ++ G ++ GS+ GS
Sbjct: 31 LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV 90
Query: 674 -----------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712
++ V Q +PW T+ +N+ FG +E K
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKR--- 144
Query: 713 DVDISL-MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
VD L +VG GE LSGG + R+ LARA + I ++D+ SA+D
Sbjct: 145 -VDEQLELVGLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------- 672
+ LP + A+ G GSGK+SL+N I G G I +G
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 673 -SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I YV Q P T+R N+ +G ++ D ++L+ G +
Sbjct: 76 RRIGYVFQDARLFPHY---TVRGNLRYGMWKSMRAQ--------FDQLVALL--GIEHLL 122
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSGG++ R+A+ RA+ ++ ++D+ L+++D R IL L++ R
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-------YLERLR 175
Query: 788 -------ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
+ +H++ + AD VVV++ G+VK G +
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG---EMMLTHGSIHASG---------- 672
+LN VSL + G ++A++G GSGK++LL++I G T G I +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 673 SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+AYV Q +L G T+R+ + + + + L D++L G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769
G +SGG+R R+++A + + +LD+ S +D+ A
Sbjct: 142 KG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L+ VSL + KG + + G G+GK++LL + G + + G + +G
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 673 --SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 724
I V Q +L T+ +N+ GK + + A L VG
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGK--KEREIQRRVGA-ALR-----QVG--- 126
Query: 725 AYIGEKGVN----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ IL + +
Sbjct: 127 --LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRL 183
Query: 781 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 810
+ T I+ TH++ + A V+++D G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 45/206 (21%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--LGEMMLT---HGSIHASGSIAY 676
+ +L V+L +PK S+ A+IG G GKS+ + ++ + +++ G I+ G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 677 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL- 712
P Q P +I DN+ +G +++ + E+LKA L
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 713 -DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
+V L D + +G LSGGQ+ RL +AR + ++ ++D+ SA+D ++
Sbjct: 134 DEVKDKL----DKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTT 183
Query: 772 ILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + I H L++ T ++ THN+Q
Sbjct: 184 KIEDLI---HKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 48/209 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 676
+ + + K + A+IG GSGKS+ L S L M T +G I Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVTGQILYRGIDINRKEI 94
Query: 677 -----------VPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 715
V Q P + +I +NI F K + +LK L V
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
L + + LSGGQ+ RL +ARA+ DI ++D+ SA+D ++ L
Sbjct: 155 DDL---------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTMQLEE 204
Query: 776 AIMGPHMLQK--TRILCTHNV-QAISAAD 801
+ L+K T I+ THN+ QA A+D
Sbjct: 205 TMF---ELKKNYTIIIVTHNMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M++ + T + QN L++VS KG +V +G G+GKS+ + I G +
Sbjct: 1 MSIRVSSLTKLY-----GTQNA-LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP 54
Query: 664 THGSIHASG------------SIAYVPQ-VPWILSGTIRDNILF-GKNY--DPQSYSETL 707
GS+ G +I Y+P+ P L +R+ + F Y Q + +
Sbjct: 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV 114
Query: 708 KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+ +++ + IG+ LS G R R+ LA+A+ H + +LD+ + +D
Sbjct: 115 EEM---IELVGLRPEQHKKIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-- 165
Query: 768 VARWILSNAIMGPHML------QKTRILCTHNVQAISA-ADMVVVMDKGQV 811
N ++ + KT IL TH +Q + A D V++++KG++
Sbjct: 166 ------PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTP--ICGGQILVDGLNIINTPVRDL 1296
L +++ + G + ++G +GAGK++++NAL FR G +L++G+ I +++
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEM 97
Query: 1297 RGRFAVVPQSPFLFEGSL--RDNL---DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL--- 1347
R A V Q LF +L R++L M + + EK V E ++A+GL
Sbjct: 98 RAISAYVQQDD-LFIPTLTVREHLMFQAHLRMPRRV---TKKEKRERVDEVLQALGLRKC 153
Query: 1348 -ETFVKESGI--SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
T + G S G+R+ + A LL +L DE T+ +D+ A + +
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 1405 -KGMTVITIAHRISTVL--NMDEILILDHGHLVEQGNPQTLLQ 1444
KG T+I H+ S+ L D+I+++ G + G+P +
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 45/223 (20%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L++++ +++ G V ++GR+G GKS++ L L G + G P+ L
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-----EPLAKLNRA 82
Query: 1300 ------------F-----AVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEE 1341
F AV P+ ++R+ + P L L + E
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLAR--ASEM 134
Query: 1342 VEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ AV L K S GQ Q +CLARAL K+L LDE +N+D +LQ
Sbjct: 135 LRAVDLDDSVLDKRPP-QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189
Query: 1400 ISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVE 1435
+ K G + I H + V ++++D+G +VE
Sbjct: 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 59/245 (24%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
+ ++ VS L KG ++ ++GE GSGKS L +I+G + + I G
Sbjct: 13 TDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI-VGGEILFDG 71
Query: 674 ------------------IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLK 708
IA + Q P + I + + + ++ +
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE-R 130
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSA 763
A +++ +VG E+ + LSGG R R+ +A A+ + + D+ +A
Sbjct: 131 A----IELLELVGIPDP---ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 764 VDAQVARWILSNAIMGPHMLQKTR-------ILCTHNVQAIS-AADMVVVMDKGQVKWIG 815
+D V IL +L++ + IL TH++ ++ AD V VM G++ G
Sbjct: 184 LDVTVQAQILD-------LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 816 SSADL 820
++
Sbjct: 237 PVEEI 241
|
Length = 316 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 792
LSGGQR R+A+ R + +++LD+ LS +DA + R + I H L +T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTH 192
Query: 793 N-VQAISAADMVVVMDKGQVKWIGSSADL 820
+ V+A++ AD +VV+D G+V +G +L
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-07
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L ++N I+ G V +VG++GAGK+++L + G + + P +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS- 456
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS- 1357
A++P G + + L S + E+ + +G+S
Sbjct: 457 --ALIP-------GEYEPEFGEVTILEHL--RSKTGDLNAAVEI--------LNRAGLSD 497
Query: 1358 ----------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--K 1405
S GQ++ LA+ L + VL +DE A++D TA + IS
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 1406 GMTVITIAHR--ISTVLNMDEILILDHG 1431
G+T+I + HR + L D ++++ +G
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYG 585
|
Length = 593 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 39/199 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV----DGLNIINTPVR- 1294
L +++ ++ G V + G +G+GKS++L +L+ GQILV + ++++ R
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 1295 --DLRGR--------FAVVPQ--------SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
++R V+P+ P L G R+ K +L +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVA-------RAKAADLLTRL 139
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
++ E + ++ TF SG G++Q + +AR + +L LDE TA++DA +++
Sbjct: 140 NLPERLWSLAPATF---SG-----GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1397 QNAIS-SECKGMTVITIAH 1414
I ++ +G ++ I H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 48/233 (20%)
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------------ 1288
++ I G I+G G GKS++L L RL G + +DG +I
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 1289 ------INTP----VRDL--RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
TP V++L RGR+ P P W ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRY---PHQPLFTR------------------WRKEDEE 122
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
V + ++A G+ +S + S GQRQ +A L + + ++ LDE T +D L
Sbjct: 123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
Query: 1397 QNAIS--SECKGMTVITIAHRISTVLNMDEILI-LDHGHLVEQGNPQTLLQDE 1446
+S + KG T+ + H ++ LI L G +V QG P+ ++ E
Sbjct: 183 LELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 112/549 (20%), Positives = 199/549 (36%), Gaps = 75/549 (13%)
Query: 285 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLS 344
GLL +N ++ L L +FL G L + ++ ++ + + + +
Sbjct: 31 GLLAFINQALIETADTSLLVLPEFL----GLL--LLFMVSSLISQLGLTTLGQHFIY--- 81
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW--SL 402
KLRS + +K L L + ++ D R ++ A S ++
Sbjct: 82 ----KLRSEFI----KKILDTPLERIERLGSARLLAGLTSDV-RNISFAFSRLPELVQAI 132
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ----KDERIR 458
+G A YL Y K +T++ I V W ++ K M +D+
Sbjct: 133 ILTLGSAAYLAYLSPKM-----FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187
Query: 459 RTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516
IL + L + E + ++ L + E +H R W + L
Sbjct: 188 DYQTILEGRKELTLNRERAEYVHNN-LYIPDAQEYRHHIIRANTFHLLAVNW-SNIMLLG 245
Query: 517 LFTFGLFALMGHQL-----DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571
L GL + L + A + LF L +PL S ++ L+ A ++ ++ +
Sbjct: 246 LI--GLVFWLALSLGWASTNVAATIVLVLLF--LRTPLLSAVGILPTLLTAQVAFNKIAK 301
Query: 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 631
+ YK + + P + L +++ ++ ++ + ++
Sbjct: 302 L-ELAPYKADFPRPQAFPDW--KTLE----------LRNVRFAY-----QDNAFHVGPIN 343
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP---WILSGTI 688
L + +G LV +IG GSGKS+L + G G I G Q+ + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 689 RDNILF-----GKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
D LF + PQ + L+ L SL G + + LS GQ+ RL
Sbjct: 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN-DGRFS-----NLKLSTGQKKRL 457
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADM 802
AL A+ DI +LD+ + D R + KT +H+ AD
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 803 VVVMDKGQV 811
++ M GQ+
Sbjct: 518 LLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHASG-- 672
L+ +SL + + A+IG G GKS+ L + GE++L +I+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVDI 716
+ V Q P +I +N+ +G K Y + +L+ L +V
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
L E + LSGGQ+ RL +ARA+ ++ ++D+ SA+D +A +
Sbjct: 142 RL---------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEEL 191
Query: 777 IMGPHMLQK--TRILCTHNVQ 795
I H L+ T I+ THN+Q
Sbjct: 192 I---HELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+ L+ +S + KG + ++G G+GK++ + ILG ++ G + G
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71
Query: 674 IAYVPQVPWILSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
I Y+P+ G + D ++ Y Q + +D L Y
Sbjct: 72 IGYLPEE----RGLYPKMKVIDQLV----YLAQLKGLKKEEARRRIDEWLERLELSEYAN 123
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
++ LS G + ++ AV H ++ +LD+ S +D V +L + I KT I
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVI 182
Query: 789 LCTHNVQAISA-ADMVVVMDKGQV 811
L TH ++ + D V++++KG+
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V +N SL + +G + ++G GSGKS+L+ + + T G I G
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 673 -----SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I+ V Q +P T+ +N+ FG +E + +++ + G
Sbjct: 102 ELRRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y E LSGG + R+ LARA+ + DI ++D+ SA+D + + + L
Sbjct: 159 DKYPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 784 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGS 816
+KT + TH++ A+ D + +M G++ +G+
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ VL VSL + KG +VA++G GSGKS+LL+ + G T G + +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74
Query: 673 ---------SIAYVPQVPWILSG-TIRDNI---LFGKNYDPQSYSETLKACTLDVDISLM 719
+ ++ Q +L T +N+ L + E V +
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-- 132
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
I + LSGG+R R+A+ARA+ + + + D+ +D A+ I + ++
Sbjct: 133 -----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLE 186
Query: 780 PHMLQKTR-ILCTHNVQAISAADMVVVMDKGQVK 812
+ T ++ TH+++ D V+ M GQ+
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 36/187 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---- 1295
++FT+ G + + G G+GK+++L + L P G I +DG +I + V +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVK 1352
L R A+ P L ++ +NL+ F W+ E+ + +EAVGL
Sbjct: 78 LGHRNAM---KPAL---TVAENLE-F--------WAAFLGGEELDIAAALEAVGL----- 117
Query: 1353 ESGIS------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1405
+ ++ S GQ++ + LAR L+ + + LDE TA +DA ++ I +
Sbjct: 118 -APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1406 -GMTVIT 1411
G+ +
Sbjct: 177 GGIVIAA 183
|
Length = 207 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 57/238 (23%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
+Y +N V+ V L +P+ + A++G G GKS+LL + L E G +
Sbjct: 13 YYGSNH-----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 670 ASGSIAYVPQVPWILSG----------------TIRDNILFGKNYD---------PQSYS 704
G Y P V I TI DN+ G + +
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 705 ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764
LK L ++ + + NLSGGQR RL +ARA+ I ++D+ + +
Sbjct: 128 WALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 765 D----AQVARWILSNAIMGPHMLQK--TRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
D A++ + L+K T +L TH+ QA +D V + G++ +G
Sbjct: 181 DPVGTAKIEELLFE--------LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 54/241 (22%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L + IE +V +VGR GAGKS+++ L G +L DG I + R
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVAR-- 70
Query: 1300 FAVVPQSP----------FLFEG--SLRDNLDPFH--------------MNDDLKIWSVL 1333
+ Q P F+ EG + L +H +N+ K+ L
Sbjct: 71 ---LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 1334 EKCH---------VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+ H + E + +GL+ S S S G + L RAL+ + VL LDE
Sbjct: 128 D--HHNLWQLENRINEVLAQLGLDPDAALS--SLSGGWLRKAALGRALVSNPDVLLLDEP 183
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE-QGNPQTL 1442
T ++D +T L+ + + +G ++I I+H S + NM I+ LD G LV GN
Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
Query: 1443 L 1443
L
Sbjct: 242 L 242
|
Length = 635 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-------DGLNIINT 1291
L +++ T+ G V + G +GAGKS++L +L+ G+ILV D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1292 PVRDLRGR--------FAVVPQSPFL--FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
V ++R + V+P+ L L + P + +L + ++ E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP-REAARARARELLARLNIPER 141
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
+ + TF SG G++Q + +AR + +L LDE TA++DA ++ I+
Sbjct: 142 LWHLPPATF---SG-----GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 1402 S-ECKGMTVITIAH 1414
+ +G +I I H
Sbjct: 194 EAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
+ VS + +G + ++G G+GK++ + + + T G +G
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 673 --SIAYVPQ---VPWILSGTIRDNI-LFGKNYD------PQSYSETLKACTLDVDISLMV 720
I V Q V L+G +N+ + + Y + E L L
Sbjct: 72 RRRIGIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGL-------- 121
Query: 721 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---WILSNA 776
+ A ++ V SGG R RL +AR++ H ++ LD+ +D Q R W
Sbjct: 122 -LEAA---DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ-TRAHVWEYIEK 176
Query: 777 IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ + T +L TH + +A D V ++D G++ G+ +L
Sbjct: 177 LKEEFGM--TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300
+I+ + G +G+ G GAG++ + L+ L P GG+I+++G I L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 1301 AVVP---QSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1356
+P QS L+ + L N+ N W +K E LE + + I
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHN-RRGFW-------IKPARENAVLERYRRALNI 392
Query: 1357 SF----------SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECK 1405
F S G +Q + +A+ L S ++L +DE T VD + I Q S +
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 1406 GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ V+ I+ + + M D +L++ G +
Sbjct: 453 NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1254 GIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPVR--DLRGRFAVVPQS 1306
I+G +G GKS+ L L R+ + G++ NI V LR + ++V
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 1307 PFLFEGSLRDNL---------DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
P LF S+ DN+ P DD+ + S L+ + +E++ + +S +
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDI-VESALKDADLWDEIK-----HKIHKSALD 150
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHR 1415
S GQ+Q +C+ARAL KVL +DE +D + +++ I S +T++ ++H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1416 ISTVLNMDEILILDHGH 1432
+ V + + G+
Sbjct: 211 LHQVSRLSDFTAFFKGN 227
|
Length = 261 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL---FRLTPI 1276
Q L+ + MR+ L A++++N + V ++G GAGK+++ N L ++ T
Sbjct: 3 QPLLSVSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-- 58
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVP--QSPFLF-EGSLRDNL---DPFHMNDDLKIW 1330
GG IL+ G +I P + R VV Q LF E ++ +NL + L +
Sbjct: 59 -GGTILLRGQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGL--F 114
Query: 1331 SVLEK--CHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378
S L K + E EA VGL + + GQ++ + +AR ++ ++
Sbjct: 115 SGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
Query: 1379 LCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1435
L LDE A ++ + L I+ +TV+ I H + V+ + D I +++ G +
Sbjct: 175 LMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234
Query: 1436 QGNPQTLLQDE 1446
G P+ + +
Sbjct: 235 NGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 42/167 (25%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFG 695
G ++ ++G GSGK++L ++ E+ G + + G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------YIDGE-------- 39
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
D+ ++ + +G K + SG R RLALA A D+
Sbjct: 40 -----------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCTHNVQAIS 798
+LD++ S +DA+ +L + +L K ++ T N +
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
+ + L +S + KG +V IG G+GK++ L + G + T G + +G V
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV 84
Query: 678 P-------------------QVPWILSGTIRDNILFGK---NYDPQSYSETLKACTLDVD 715
P Q+ W L + D+ + P + + L + +D
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLP--VIDSFYLLAAIYDLPPARFKKRLDELSELLD 142
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+ ++ + LS GQR R +A A+ H +I LD+ +D VA+ + N
Sbjct: 143 L-----EELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV-VAQENIRN 194
Query: 776 AIMGPHMLQKTR----ILCTHNVQAISA-ADMVVVMDKGQV 811
+ + R +L +H ++ I A A V+V+DKG++
Sbjct: 195 FL---KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEM 661
I+Q + S Y N ++ LN VSL + A+IG GSGKS+LL SI L
Sbjct: 5 ILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 662 MLTHGSIHASGSIAYVP---------------QVPWILSGTIRDNILFGKNYDPQSYSET 706
+ GSI +G Y P Q P +I +N+++G +
Sbjct: 61 VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 707 LKACTLDVDISLMVGGDM-----AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
L V+ SL G + + + + LSGGQ+ R+ +AR + I +LD+
Sbjct: 121 LDEA---VEKSL-KGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 762 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
SA+D A I + T +L T ++Q S
Sbjct: 177 SALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVP 681
L+ +++ + G V ++G G+GKS+LL I E + T G+I +G ++ + +P
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 682 W--------------ILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ + + +N+ F P+ + + A V +S
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS---HKHR 131
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
A E LSGG++ R+A+ARA+ + I + D+ +D I+ N + +
Sbjct: 132 ALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAG 186
Query: 785 KTRILCTHN 793
T ++ TH
Sbjct: 187 TTVVVATHA 195
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L V+L + GS A IG GSGKS+++ + G + T GS+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYS-ETLKACTLDVDISLMVGGDMAY 726
+ V Q P + T+ ++ FG PQ++ +A L + +VG +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFG----PQNFGVSQEEAEALAREKLALVGISESL 138
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQ R+A+A + I +LD+ + +D + R L H T
Sbjct: 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK-GRKELMTLFKKLHQSGMT 197
Query: 787 RILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+L TH + ++ AD V V++KG++ G D+
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG 672
+ L V L +P ++A IG G GKS+LL + G ++ +I+ S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 673 --------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ V Q P +I +NI F + Y L D + ++
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN--GYKGNLDELVEDSLRRAAIWEEV 151
Query: 725 A-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ EKG LSGGQ+ RL +ARA+ D+ ++D+ SA+D R + +
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-- 209
Query: 784 QKTRILCTHNVQAIS 798
Q T I+ THN+Q S
Sbjct: 210 QYTIIMVTHNMQQAS 224
|
Length = 274 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 35/187 (18%)
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
++FT+ G V I G GAGK+S+L L L G++L G P+R R +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-----EPIRRQRDEY 72
Query: 1301 AVVPQSPFLFEGSL---RDNLDPF----------HMNDDLKIWSVLEKCHVKEEVEAVGL 1347
L+ G + L DD +W L + VGL
Sbjct: 73 H----QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---------VGL 119
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAISSECK- 1405
F S GQ++ + LAR L + + LDE TA +D Q + L+ ++ +
Sbjct: 120 AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA-IDKQGVARLEALLAQHAEQ 178
Query: 1406 -GMTVIT 1411
GM ++T
Sbjct: 179 GGMVILT 185
|
Length = 204 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY +L ++L + K + A IG G GKS+ L + GE+
Sbjct: 14 WY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68
Query: 663 LTHGSIHA--------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 713
+ +++ + V Q P +I DN+ +G P+ + LD
Sbjct: 69 IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG----PKLHGLAKNKKKLDE 124
Query: 714 -VDISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V+ SL G +G++ LSGGQ+ RL +ARA+ + ++D+ SA+D V
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-V 183
Query: 769 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
A ++ N I L+K T I+ TH++ QA +D V G++ ++ ++
Sbjct: 184 ATNVIENLI---QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 62/225 (27%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V + VSL + KG + A++GE G+GKS+L+ + G G I G
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISL 718
I V Q VP + T+ +NI+ G E K +D ++S
Sbjct: 78 RLGIGMVHQHFMLVP---TLTVAENIILG--------LEPSKGGLIDRRQARARIKELSE 126
Query: 719 MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD---VLSAVDAQVARW- 771
G + A + + LS G++ R+ + +A+Y G+ + +LD+ VL+ +
Sbjct: 127 RYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLT--PQEADELF 180
Query: 772 -ILSNAI-MGPHMLQKTRILCTH---NVQAISAADMVVVMDKGQV 811
IL G KT I TH V AI AD V V+ +G+V
Sbjct: 181 EILRRLAAEG-----KTIIFITHKLKEVMAI--ADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------S 673
SL + +G + ++G GSGKS+++ + + T G + G
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
IA V Q ++ T+ DN FG + E + LD +L G Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK-ALD---ALRQVGLENYAHSYPD 163
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGG R R+ LARA+ DI ++D+ SA+D + + + Q+T + +H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 793 NV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ +A+ D + +M G+V +G+ ++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 40/197 (20%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGS--------------- 673
+ K + IG G GKS++L S+ L + G +H G
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 674 IAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTL--DVDISLMVGGDMA 725
I V Q P S +I DN+ FG K L+ L +V L V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV----- 145
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
G++LSGGQ+ RL +ARA+ ++ +LD+ SA+D R + +M
Sbjct: 146 ----SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV--EELMVELKKDY 199
Query: 786 TRILCTHNV-QAISAAD 801
T L THN+ QAI AD
Sbjct: 200 TIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRD 1295
P I+F++ G VG+ G GAG+S ++ L+ T GQ+ +DG I I +P
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1296 LRGRFAVVPQSPFLFEG-----SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVG 1346
+R + P+ EG S+ DN++ H+ I + E + + ++
Sbjct: 326 IRAGIMLCPEDR-KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN 384
Query: 1347 LETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
++T +E I S G +Q L R L + KV+ LDE T +D + N I
Sbjct: 385 IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 1406 -GMTVITIAHRISTVLNM-DEILILDHGHLV-----EQGNPQTLLQ 1444
G+ V+ ++ + VL + D I+++ G + EQ + L
Sbjct: 445 QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALS 490
|
Length = 501 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 79/239 (33%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------I 674
V+ + L + G + ++G G GKS+LL + G +T G I G I
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78
Query: 675 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLK----------------ACTLDV 714
A V Q P + ++R+N+ +G LK A L++
Sbjct: 79 AMVFQNYALYPHM---SVRENMAYG-----------LKIRGMPKAEIEERVAEAARILEL 124
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWI 772
+ + K LSGGQR R+A+ RA+ +++ D+ LS +DA+ V
Sbjct: 125 E---------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV---- 171
Query: 773 LSNAIMGPHM------LQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
M L + T + TH+ V+A++ AD VVVM+ G + IG+ ++
Sbjct: 172 --------QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 49/236 (20%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG--GQILVDG--LNIINTPVRD- 1295
D++F + G +GIVG +G+GKS++L L RL P G I+ G L + +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 1296 ---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF-- 1350
+R + V Q+P RD L M V ++ E + A+G +
Sbjct: 81 RRLMRTEWGFVHQNP-------RDGL---RMR-------VSAGANIGERLMAIGARHYGN 123
Query: 1351 --------VKESGI----------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
++E I +FS G +Q + +AR L+ +++ +DE T +D
Sbjct: 124 IRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183
Query: 1393 ASILQNAISSECK--GMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQD 1445
+ L + + + G+ VI + H + L +L++ G +VE G +L D
Sbjct: 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1278
+ L+ ++ Y P D++F + G +GIVG +G+GK+++L + RLTP G
Sbjct: 4 KPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 1279 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
D + R L R + V Q+P RD L
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP-------RDGLRM---------- 104
Query: 1331 SVLEKCHVKEEVEAVG--------------LE------TFVKESGISFSVGQRQLICLAR 1370
V ++ E + A+G LE + + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164
Query: 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTV-LNMDEILI 1427
L+ +++ +DE T +D + L + + + G+ V+ + H ++ L D +++
Sbjct: 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMV 224
Query: 1428 LDHGHLVEQGNPQTLLQD 1445
+ G +VE G +L D
Sbjct: 225 MKQGQVVESGLTDRVLDD 242
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLR 1297
A+ D++F + G VGI G G G+S ++ A+ L G+IL++G +++ R+ R
Sbjct: 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332
Query: 1298 GR-FAVVPQSPF----LFEGSLRDNL-------DPFHMNDDLKIWSVLEKCHVKE----- 1340
A VP+ + + SL +NL PF L + K +E
Sbjct: 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD-RRAIRK-FARELIEEF 390
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+V A + + S S G +Q + LAR L + +L + T +D + +
Sbjct: 391 DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 1401 SSECKGMTVITIAHRISTVLNMDEILIL 1428
+ + IS L DEIL L
Sbjct: 447 LELRDAGKAVLL---ISEDL--DEILEL 469
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
+L+ VSL L G +VA++G G+GKS+LL ++ GE+ G +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
VL ++ +G ++A++G G+GKS+LL + G + G++ G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 674 ---IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ V Q P + + + ++ FG P + + V +L G
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFG----PLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
LSGG++ R+A+A AV D+ +LD+ + +D +L+ + T +
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA-ILRRLRAEGMTVV 181
Query: 789 LCTHNV 794
+ TH+V
Sbjct: 182 ISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VSL + +G V ++G G GKS+L +LG G++ G
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 673 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
S + V P+ V I+ +R ++ +E L L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED-- 143
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
+ LSGGQ R+ +ARA+ + +LD+ +S +D + IL
Sbjct: 144 --------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE---- 191
Query: 779 GPHMLQKTR-------ILCTHNVQAI-SAADMVVVMDKGQV 811
+L+K + + TH+++ + S V VMDKGQ+
Sbjct: 192 ---LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-06
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 38/231 (16%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL-------NIIN 1290
AA+ +++F+++ G + IVG +G+GKS AL RL GG + D + +I
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 1291 ------TPVRDLRGR-FAVVPQSPFLFEGSLRDNLDP-FHMNDDL-----------KIWS 1331
+R +RG A++ Q P +L+P F + + + + +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
++E + ++V +T + S G RQ + +A AL VL DE T +D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1392 -TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
A ILQ + E M VI I H + V + D +L++ G VE G+
Sbjct: 203 IQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 43/156 (27%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQVPW 682
++++ +S LP G +V VIG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ--- 392
Query: 683 ILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG----- 728
RD + DP + S L DI + +G ++ AY+G
Sbjct: 393 -----SRDAL------DPNKTVWEEISGGL-------DI-IQLGKREVPSRAYVGRFNFK 433
Query: 729 ----EKGV-NLSGGQRARLALARAVYHGSDIYMLDD 759
+K V LSGG+R R+ LA+ + G ++ +LD+
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
E + LN +S +P+G +V +IG GSGKS+L N I G M G++ GS A +
Sbjct: 35 EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA--- 91
Query: 682 WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----LS 735
I SG + L G +N + + L + I ++ + A IG K + S
Sbjct: 92 -ISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEII--EFADIG-KFIYQPVKTYS 145
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVD 765
G ++RL A +V+ DI ++D+ LS D
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDL 1296
L D + ++ G V ++GR G+G S++L AL T G I +G+
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-------- 74
Query: 1297 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL---ETFVKE 1353
FA ++ +D+ ++ V+E ++ FV+
Sbjct: 75 -KEFAEKYPGEIIYVSE-----------EDVHFPTLT----VRETLDFALRCKGNEFVR- 117
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTV 1409
GIS G+R+ + +A AL+ + VLC D T +D+ TA ++ ++ K T
Sbjct: 118 -GIS--GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT-MADVLKTTTF 173
Query: 1410 ITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+++ + ++ D++L+L G + G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 53/247 (21%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG----------GQILVDGLN 1287
A L D++ IE G ++GR GAGKS++L AL + G G + ++G
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 1288 IINTPVRDLRGRFAVVPQSP---FLFEGSLRD--NLDPF----------HMNDDLKIWSV 1332
+ L AV+PQ+ F F S R+ L + H + ++ W
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAF--SAREIVLLGRYPHARRAGALTHRDGEI-AWQA 129
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---------SSKVLCLDE 1383
L G V + S G+ + AR L + + L LDE
Sbjct: 130 LAL---------AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 1384 CTANVD-AQTASILQN--AISSECKGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNP 1439
TA +D A +L ++ + + V+ I H + + D I +L G +V G P
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
Query: 1440 QTLLQDE 1446
+L
Sbjct: 240 ADVLTPA 246
|
Length = 272 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ-VPWILSGTIRD--- 690
+ ++ ++G G GK++ + + G + G I +++Y PQ + GT+RD
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVY 749
+I P +E K ++ ++ ++ V LSGG+ R+A+A +
Sbjct: 84 SITKDFYTHPYFKTEIAKPLQIE---QIL---------DREVPELSGGELQRVAIAACLS 131
Query: 750 HGSDIYMLDDVLSAVDAQ--------VARWILSNAIMGPHMLQKTRILCTHNVQAIS-AA 800
+DIY+LD+ + +D + + R+ +N +KT + H++ I A
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--------EKTAFVVEHDIIMIDYLA 183
Query: 801 DMVVVMD 807
D ++V +
Sbjct: 184 DRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------------ASG 672
VV+N +S + +G ++G G+GKS++ +LG + G I A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77
Query: 673 SIAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+I VPQ + T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFG-------MSTREIEAVIPSLL--EFARLESK 128
Query: 731 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 187
Query: 787 RILCTHNV-QAISAADMVVVMDKG 809
+L TH + +A D + V++ G
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 40/173 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQ- 679
Q VL+ VSL L G ++ ++G G+GKS+L+ +LG + G I +G I YVPQ
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75
Query: 680 ------VPWILS-------GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+P ++ GT +++IL LK V ++ M
Sbjct: 76 LYLDTTLPLTVNRFLRLRPGTKKEDIL-----------PALKR----VQAGHLIDAPMQ- 119
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAI 777
LSGG+ R+ LARA+ + + +LD+ VD QVA + L + +
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
L S + G +V V+G GSG S+LL ++ T G++ G I Y
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIHY---------N 70
Query: 687 TIRDNILFGKNYDPQS-YS--ETLKACTLDV----DISLMVGGDMAYIGEKGVNLSGGQR 739
I F + Y + Y E + TL V D +L G+ ++ +G+ SGG+R
Sbjct: 71 GI-PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN-EFV--RGI--SGGER 124
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
R+++A A+ + + D+ +D+ A IL + +L T ++
Sbjct: 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC------IRTMADVLKTTTFVSLYQ 178
Query: 800 A--------DMVVVMDKGQV 811
A D V+V+ +G+
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 43/156 (27%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVPQVP 681
++++ +S LP G +V +IG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS- 395
Query: 682 WILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG---- 728
RD + DP + S L DI + VG ++ AY+G
Sbjct: 396 -------RDAL------DPNKTVWEEISGGL-------DI-IKVGNREIPSRAYVGRFNF 434
Query: 729 -----EKGV-NLSGGQRARLALARAVYHGSDIYMLD 758
+K V LSGG+R RL LA+ + G ++ +LD
Sbjct: 435 KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470
|
Length = 556 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 53/206 (25%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAYVPQV 680
L +S+ +PK + A IG G GKS+LL L + G I G Y +V
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 681 ---------------PWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 715
P +I +N+++G + ++ +L+ L +V
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 771
L E LSGGQ+ RL +ARA+ ++ +LD+ SA+D ++
Sbjct: 160 DRL---------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 772 I--LSNAIMGPHMLQKTRILCTHNVQ 795
I L + + T ++ THN+Q
Sbjct: 211 ITELKS--------KYTIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L++VSL + +G +V +IG G+GK++LL ++ G+ T G I G
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 673 -SIAYVPQVPWILSG-TIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
++A VP+ + S T+ +N+ G + + + E +K V + E
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK----------WVYELFPRLHE 129
Query: 730 KGVN----LSGGQRARLALARAVYHGSDIYMLDD 759
+ + +SGG++ LA+ RA+ + +LD+
Sbjct: 130 RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIA 675
+N L + + +P LV V G GSGKS+L+N L +ASG
Sbjct: 7 NVHN-------LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----------YASGKAR 49
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAY--IGEKGV 732
+ +S + +D + ++ + Y +G+K
Sbjct: 50 LIS--------------------FLPKFSRNK---LIFIDQLQFLIDVGLGYLTLGQKLS 86
Query: 733 NLSGGQRARLALARAVYHGSD--IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGG+ R+ LA ++ +++LD+ + + Q +L I G L T IL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145
Query: 791 THNVQAISAADMVVVMDKGQ 810
HN+ +S+AD ++ G
Sbjct: 146 EHNLDVLSSADWIIDFGPGS 165
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY E+Q L VS+ +PK S+ A+IG G GKS+ + I G++
Sbjct: 21 WY---GEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75
Query: 663 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
+ I+ ++ V Q P +I DN+ +G P+ + K V
Sbjct: 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG----PRIHGANKKDLDGVV 131
Query: 715 DISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
+ +L ++ ++LSGGQ+ RL +AR + I + D+ SA+D ++
Sbjct: 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-IST 190
Query: 771 WILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + IM L+K T ++ THN+Q
Sbjct: 191 ARIEDLIMN---LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASGS- 673
L VS+ +P+ S+ A+IG G GKS+ L I G + L I+ G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 674 -------IAYVPQVPWILSGTIRDNI-----------------LFGKNYDPQSYSETLKA 709
+ V Q P +IR+NI L G++ D + E ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD-DKDAEDELVER 179
Query: 710 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769
+ V + + + LSGGQ+ RL +AR + ++ ++D+ SA+D +A
Sbjct: 180 SLRQAALWDEVNDRL---DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IA 235
Query: 770 RWILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + I L + T ++ THN+Q
Sbjct: 236 TSKIEDLI---EELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
E + + + +S L G + V G GSGK++LL + G G + +G
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ Y+ P I + ++ +N+ F + E ++ V +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALARVG--------LNG 117
Query: 727 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-VAR 770
++ V LS GQ+ R+ALAR + G +++LD+ +A+D VAR
Sbjct: 118 FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFE 1311
G+VG G GKS++ L L G +L G L+ + LR + A V Q P
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP---- 86
Query: 1312 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE---------VEAVGLETFVKESGISFSVGQ 1362
F+ + D I L V E + V + F + S GQ
Sbjct: 87 -----EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQ 141
Query: 1363 RQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRIST 1418
++ + +A AL+ ++ L LDE TA +D Q +I++ ++ +G VI +H I
Sbjct: 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDL 198
Query: 1419 VLNM-DEILILDHGHLVEQGNP 1439
+ + D + +L G ++ G P
Sbjct: 199 IYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 54/218 (24%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ + L + D++F + G VG++G GAGKS+ LFR+ I G +
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKST----LFRM--ITGQEQP 374
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM--------NDDLKIWSVLE 1334
G I V + A V QS RD LDP D +++
Sbjct: 375 DSGTIKIGETV-----KLAYVDQS--------RDALDPNKTVWEEISGGLDIIQLGKR-- 419
Query: 1335 KCHVKEEVEA---VGLETFV-----KESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
EV + VG F K+ G S G+R + LA+ L VL LDE T
Sbjct: 420 ------EVPSRAYVGRFNFKGSDQQKKVG-QLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAH------RIST 1418
++D +T L+ A+ E G V+ I+H RI+T
Sbjct: 473 DLDVETLRALEEAL-LEFAGCAVV-ISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P + ++E +N+T +PS+ D++F + G +GI G GA ++ I+ LF +
Sbjct: 246 PGEVILEVRNLTSLRQPSI----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 1278 GGQILVDGLNIIN-TPVRDLRGRFAVVPQ---SPFLFE------GSLRDNLD----PFHM 1323
G I + G I N + FA+V + S ++ SL N+ +
Sbjct: 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL 361
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLD 1382
D+ ++ K + ++++ ++T + I S S G +Q + + R LL ++L LD
Sbjct: 362 LDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 1383 ECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1440
E T +D I Q K +I I+ + +L + D IL++ +G + + +
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476
Query: 1441 TLLQDE 1446
T Q+E
Sbjct: 477 TTTQNE 482
|
Length = 491 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-----KTRI 788
LSGGQ+ R+A+ARA+ + + D+ SA+D ++ +L M T +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMV 189
Query: 789 LCTHNVQ-AISAADMVVVMDKGQV 811
+ TH + A AD V+ MD G++
Sbjct: 190 VVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY E+Q LN ++L + + + A+IG G GKS+ L I GE++
Sbjct: 13 WY---GEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67
Query: 663 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSET 706
L +I+ + V Q P +I DN+ +G K +
Sbjct: 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWA 127
Query: 707 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
LK L ++ + + + LSGGQ+ RL +AR + D+ ++D+ SA+D
Sbjct: 128 LKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
I +M + T ++ THN+Q S
Sbjct: 181 ISTLKI--EDLMVELKKEYTIVIVTHNMQQAS 210
|
Length = 251 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661
+ + +++ + N ++ +L +S + G A++G G+GK++LL+ + GE
Sbjct: 28 NEPLIELKNVSVR--RNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81
Query: 662 MLTHGSI---------------------HASGSIAYVPQVPWILSGTIRDNILFGKNYDP 700
+ G + S + +V T+RD +L G +
Sbjct: 82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE----TVRDVVLSGF-FAS 136
Query: 701 QS-YSETLKACTLDVDISLM-VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
Y E L A L L+ + G +LS G++ R+ +ARA+ ++ +LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 759 DVLSAVDAQVARWILSNAI-------MGPHMLQKTRILCTHNVQAISA 799
+ +D +AR L N + P +L TH+ + I
Sbjct: 197 EPAQGLDL-IAREQLLNRLEELAASPGAPALL-----FVTHHAEEIPP 238
|
Length = 257 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ VL ++L + G +VAV+G+ G+GK++LL ILG G Y P
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-------GRGEEKYRPDSGK 447
Query: 683 ILSGTIRDNILFGKNYDPQSYSET----LKACTLDVDISL----MVGGDMAYIGEKGVN- 733
+ + L Y+P+ T L++ T D++ ++ G A + + +
Sbjct: 448 VEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LS GQ+ R LA+ + ++ ++D+ + +D A + T I+ TH
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 794 VQAISA--ADMVVVMDKGQV 811
+ +A D ++++ G+V
Sbjct: 568 PEVGNALRPDTLILVGYGKV 587
|
Length = 593 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 49/277 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------IAY 676
++ +S +P G + ++G G+GK++ ILG + T G I +G I Y
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 677 VPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+P+ + T+ D + + K + L+A ++I +K
Sbjct: 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-------GKKTKKIK 129
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LS G + ++ AV H ++ +LD+ S +D V +L +AI T I +H
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSH 188
Query: 793 NVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
++ + D ++++ KGQ T L+ +++R S
Sbjct: 189 RMEHVEELCDRLLMLKKGQ-------------------------TVLYGTVEDIR--RSF 221
Query: 852 ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTV 888
K+++++ + + I+++ + K+G + +
Sbjct: 222 GKKRLVIESDLSLEELANIPGILKITETKDGSWRIQI 258
|
Length = 300 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 55/232 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------LGEMMLTHGSIHASGSIA 675
VL+ + L + +G +V +IG GSGKS+LL I G++++ + +
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV--DGLKVNDPKV 70
Query: 676 YV-----------------PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
P + T +N++FG P K L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHL------TALENVMFG----PLRVRGASKEEAEKQAREL 120
Query: 719 M--VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ----VA 769
+ VG + A Y E LSGGQ+ R+A+ARA+ + + D+ SA+D + V
Sbjct: 121 LAKVGLAERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176
Query: 770 RWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ + A G M ++ TH + A A ++ +DKG++ G L
Sbjct: 177 KVMQDLAEEGMTM-----VIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAY----- 676
L +++L + + + A+IG G GKS+ L ++ L + G + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 677 ----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 724
V Q P +I DN+ +G P+++ K LD V+ SL
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGIKDKK-KLDEIVEKSL----KG 129
Query: 725 AYIGEK--------GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 772
A + ++ + LSGGQ+ RL +ARA+ ++ ++D+ SA+D ++ I
Sbjct: 130 AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 773 LSNAIMGPHMLQK--TRILCTHNVQ 795
L+K T ++ THN+Q
Sbjct: 190 QE--------LKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL---------GEMMLTHGSIHASGS- 673
L ++L + K + A IG G GKS+LL N + GE++L +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 674 -------IAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLD--VDISLMVGGD 723
+ V Q P +I DNI FG + ++ S +E +D V+ +L
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE------MDERVEWALTKAAL 142
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ +K G +LSGGQ+ RL +AR + ++ +LD+ SA+D
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG- 672
VL +++ P+ + A+IG G GKS+LL N I+ G ++L + +I++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 673 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 723
+ V Q P +I DN+ FG P+ T ++ LD V+ SL
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFG----PRMLGTTAQS-RLDEVVEKSLRQAAL 133
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
+ + G+ LSGGQ+ RL +AR + ++ ++D+ SA+D I +M
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI--EELMQ 191
Query: 780 PHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
T + THN+ QA A+D + G + G + ++
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L+DI+ I G V ++G +G+GK+++L + L G I G ++ RD +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMN--DDLKI-WSVLE----------KCHVKEEVEAVG 1346
F V Q LF HM D++ +VL K V + +E V
Sbjct: 78 F--VFQHYALFR----------HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISSE 1403
L S GQ+Q + LARAL ++L LDE +DAQ L+ + E
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF 1450
K T + + H + + D ++++ G++ + G P + ++ + F
Sbjct: 186 LK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYV 677
+S +PKG +V +G G+GKS+ L + G ++ T G + +G SI V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 678 ----PQVPWILSGTIRDNILFGK---NYDPQSYSETLKACT--LDVDISLMVGGDMAYIG 728
Q+ W L D++ K ++E L T LD++ L
Sbjct: 103 MGQKLQLWWDLP--ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTR 787
LS GQR R LA A+ H + LD+ +D A+ + + + Q T
Sbjct: 153 -PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV-NAQANIREFLKEYNEERQATV 210
Query: 788 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
+L TH I+ D V+++D+GQ+ + G+ A L
Sbjct: 211 LLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------HASG 672
+V++ +S + +G ++G G+GK++ L +LG GSI HA
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
Query: 673 SIAYVPQV----PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ VPQ P T+R+N+L Y S + ++ + + A +G
Sbjct: 81 RVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG 137
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
E LSGG + RL LARA+ + D+ +LD+ + +D Q AR ++ + KT +
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 789 LCTHNV-QAISAADMVVVMDKGQ 810
L TH + +A D + V+++G+
Sbjct: 193 LTTHFMEEAERLCDRLCVIEEGR 215
|
Length = 306 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 670
+N L ++L +P + A+IG G GKS+LL I G++ + I+
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 671 SGSIA-------YVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVD 715
+ +A V Q P +I +N+ +G K + +L+ L +
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+ + LSGGQ+ RL +AR + D+ ++D+ SA+D I
Sbjct: 135 VK-------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI--E 185
Query: 776 AIMGPHMLQKTRILCTHNVQ 795
+M T ++ TH++Q
Sbjct: 186 ELMEELKKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLR 1297
AL ++N + + ++G GAGKS++L LF + G IL G I + L
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 1298 GRFAVVPQSPFLF-EGSLRDNL------------DPFHMNDDLKIWSVLEKCHVKEEVEA 1344
++V Q L + S+ DN+ D M D K +
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----------TKAIFDE 121
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-E 1403
+ ++ + + SV Q Q+I +A+A ++K++ +DE T+++ + + L I +
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHLV 1434
+G ++ I+H++ + + DEI IL G +
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPIC-GGQILVDGLNIINTPVRDLR 1297
L+ + G + ++G +G+GKS++LNAL R+ G IL + P + +
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQIL 139
Query: 1298 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGL----ETFV 1351
R V Q L+ ++R+ L + K + EK V E V + +GL T +
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTII 199
Query: 1352 KESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTV 1409
S I S G+R+ + +A +L + +L LDE T+ +DA A ++ S KG T+
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTI 259
Query: 1410 ITIAHRIST-VLNM-DEILILDHG 1431
+T H+ S+ V M D +L+L G
Sbjct: 260 VTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 45/216 (20%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMML--------THGSIH 669
L ++ KG +VA++G G+GKS+L N IL GE+++ +
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 670 ASGSIAYVPQVP--WILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMV 720
++ V Q P + + T+ +++ FG K + E LKA V
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA----------V 125
Query: 721 GGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G M K + LSGGQ+ R+A+A + +I +LD+ S +D A I+
Sbjct: 126 G--MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL--- 180
Query: 780 PHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQV 811
+ L K T I+ TH+V + AD V VM G++
Sbjct: 181 -YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 3e-05
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 53/243 (21%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
WY N + VL+ ++L + + + A IG G GKS+ L ++ L E G I+
Sbjct: 89 WYMNRTKH---VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 670 ASGS---------------IAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSET 706
G+ I V Q P +I DN+ +G + + ++
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 707 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD- 765
LK+ L ++ + + G LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 206 LKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 766 ---AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
A++ IL L+K + I+ TH++ QA +D V +G ++ G +
Sbjct: 259 IATAKIEELILE--------LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310
Query: 820 LAV 822
+ +
Sbjct: 311 IFI 313
|
Length = 329 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSILGEMMLTHGSIHASGSIAY 676
+ L + L + + A+IG G GKS+ L N ++ + +T G++ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT-GNVSLRGQNIY 75
Query: 677 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLD 713
P Q P +I +N+++G K ++ +LK +
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
++ ++ E ++LSGGQ+ R+ +AR + D+ +LD+ SA+D I
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP-----IS 183
Query: 774 SNAIMGPHML-----QKTRILCTHNVQAIS 798
S I +ML Q T IL TH++ S
Sbjct: 184 STQI--ENMLLELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP 678
++ +S L G + V G G GK++LL + G + G + A
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 679 QVPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ ++ L G + +N+ F ++ ++ +L G +
Sbjct: 74 NILYLGHLPGLKPELSALENLHF--------WAAIHGGAQRTIEDALAAVGLTGFEDLPA 125
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRIL 789
LS GQ+ RLALAR + +++LD+ +A+D L ++ H L + +L
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA--LLAGLLRAH-LARGGIVLL 182
Query: 790 CTH 792
TH
Sbjct: 183 TTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------IAYVPQ 679
+L Q+S LP G L+ + G G+GK++LL I G + G I Y Q
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 680 VPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ ++ SG T+R+N L YD + L SL I
Sbjct: 76 LCFVGHRSGINPYLTLRENCL----YDIHFSPGAVGITELCRLFSL-----EHLIDYPCG 126
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
LS GQ+ ++AL R + +++LD+ L A+D I++
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
|
Length = 200 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 50/204 (24%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT------HGSIHASGSIAYVPQV 680
L V L +P+ ++ A IG G GKS+ L L M T G I G Y P++
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 681 ---------------PWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGG- 722
P +I +N+ +G P+ + LD V+ SL G
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYG----PRIHGLARSKAELDEIVETSLRKAGL 149
Query: 723 -----DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWIL 773
D + E G LSGGQ+ RL +ARA+ ++ ++D+ SA+D A+V I
Sbjct: 150 WEEVKDR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI- 206
Query: 774 SNAIMGPHMLQK--TRILCTHNVQ 795
L++ T ++ TH++Q
Sbjct: 207 -------DELRQNYTIVIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHA 670
+N + VS+ P+ S+ A+IG G GKS++L SI G+++L I+
Sbjct: 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 671 SGS--------IAYVPQVPWILSG-TIRDNILFGKNYD---PQSYS-ETLKACTLDVDIS 717
G + V Q P +I DN++ G + +S + E +++ V +
Sbjct: 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
V + + LSGGQ+ RL +AR + ++ ++D+ SA+D I +
Sbjct: 136 DEVKDRLK---SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI--EEL 190
Query: 778 MGPHMLQKTRILCTHNVQ 795
+ + T I+ THN+Q
Sbjct: 191 IEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 55/252 (21%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1278
Q L+ + +T Y P D++F + G +GIVG +G+GK+++LNAL RL P G
Sbjct: 4 QPLLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
Query: 1279 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
L D + R L R + V Q P RD L
Sbjct: 62 EVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP-------RDGLRM---------- 104
Query: 1331 SVLEKCHVKEEVEAVGLETF--VKESGI------------------SFSVGQRQLICLAR 1370
V ++ E + AVG + ++ + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164
Query: 1371 ALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTV-LNMDEI 1425
L+ +++ +DE T +D A+ +L+ + G+ V+ + H ++ L +
Sbjct: 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRL 222
Query: 1426 LILDHGHLVEQG 1437
L++ G +VE G
Sbjct: 223 LVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V+N +S + G ++G G+GKS++ ILG G I G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 674 -IAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I VPQ + L T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVIPSLL--EFARLESK 165
Query: 731 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 224
Query: 787 RILCTHNV-QAISAADMVVVMDKG 809
+L TH + +A D + V++ G
Sbjct: 225 ILLTTHFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLN----------SILGEMMLTHGSIHA----S 671
+L V+ + KG +V ++G G GKS+LL+ S GE+ L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 672 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIG 728
I + Q + ++ N+LF + TLK A + +L G
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLF-------ALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQ 784
+ LSGGQRAR+AL RA+ +LD+ S +D Q +W+ S
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----RAAG 185
Query: 785 KTRILCTHNVQAISAADMVVVM 806
+ TH++Q + A V+ M
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 52/228 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGS------- 667
L +++ + + + A+IG G GKS+ L N GE++L +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 668 ---IHASGSIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDI 716
I I+ V Q P +I +N+ +G ++ + L+ L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 772
+G D+A+ NLSGGQ+ RL +ARA+ +I + D+ SA+D A + I
Sbjct: 152 KDRLG-DLAF------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204
Query: 773 --LSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSS 817
L N + T ++ THN+ QA +D M G++ G++
Sbjct: 205 SDLKNKV--------TILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
|
Length = 265 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 38/195 (19%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG----- 672
V+L + S+ A IG G GKS++L + + GE++L ++ G
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM---- 724
+I V Q P + +IRDN++ G + + L V+ SL G ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL---VEKSL-RGANLWNEV 138
Query: 725 -AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI---MGP 780
+ + G LSGGQ+ RL +ARA+ D+ ++D+ SA+D I + AI +
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-----ISTLAIEDLINE 193
Query: 781 HMLQKTRILCTHNVQ 795
T ++ THN+Q
Sbjct: 194 LKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 34/224 (15%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPV--RD 1295
L +N T++ G I+G G+GKS++ + + G IL G +++ R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 1296 LRGRFAVVPQSP----------FL-------FEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
G F + Q P FL + LD LK + L +
Sbjct: 76 RAGLF-LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK--AKLALLGM 132
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA--NVDA-QTASI 1395
EE L V E FS G+++ + + L K+ LDE + ++DA + +
Sbjct: 133 DEEF----LNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439
N + + +IT R+ + D + +L G +V+ G+
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG-- 672
L+ +SL + L A+IG G GKS+ L I GE+ +I+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 718
+ V Q P ++ DN+ +G K Q E+LK + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
+ SGGQ+ R+ +ARA+ + +LD+ SA+D + I +
Sbjct: 139 ------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 823
H Q T I+ THN+ QA +D + G + G + ++ ++
Sbjct: 193 LKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 32/214 (14%)
Query: 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1309
G + +VG GAGKS++L + +T G I G + +L A + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ---- 79
Query: 1310 FEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAV-------GLETFVKESGISFSVG 1361
PF M +W L K E + L+ + S S G
Sbjct: 80 ------QQTPPFAM----PVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 1362 QRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIA 1413
+ Q + LA +L+ + ++L LDE ++D S L +S+ C+ G+ ++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 1414 HRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDE 1446
H ++ T+ + +L G L+ G + +L
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--GSIAYVPQ 679
+ + ++L L G +A+IGE G GK++LL +++GE+ G++ S +I Y Q
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ 389
|
Length = 530 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASG---------SIA 675
LN +S + G+L A++GE G+GK++LL+ + G + G I +G S
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 676 YVPQVPWILSG--TIRDNILF 694
YV Q + S T+R+ + F
Sbjct: 83 YVEQQD-VHSPNLTVREALRF 102
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGK++LLN++ + G +H
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQKTRILCTH 792
SGGQR R+A+ARA+ ++ +LD+ SA+D V +L + H L + + +H
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISH 485
Query: 793 NVQAISA-ADMVVVMDKGQVKWIGSSADL 820
++ + A V+VM G++ G + +
Sbjct: 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
|
Length = 534 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMMLTHGSIHASGSIA 675
NVV+ +S L G + ++GE GSGKS+ L+NS GE+ +H
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-QGEIWFDGQPLHNLNRRQ 356
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQS------------------YSETLKACTLDVD-I 716
+P I ++F DP S + TL A + I
Sbjct: 357 LLPVRHRI-------QVVF---QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 717 SLM--VGGDMA----YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
++M VG D Y E SGGQR R+A+ARA+ + +LD+ S++D V
Sbjct: 407 AVMEEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
Query: 771 WILS--NAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811
IL+ ++ H L + +H++ + A V+V+ +G+V
Sbjct: 463 QILALLKSLQQKHQL--AYLFISHDLHVVRALCHQVIVLRQGEV 504
|
Length = 529 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMM 662
WY Q+ L ++L +P+ + A+IG G GKS+ + + + GEM
Sbjct: 21 WY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 663 LTHGSIHAS--------GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 713
+I +I V Q +I DN+ +G P+ + K +
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEI 131
Query: 714 VDISLMVGGDMAYIGE-------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
V+ SL D+A E + ++LSGGQ+ RL +ARA+ D+ ++D+ SA+D
Sbjct: 132 VEKSLK---DVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQ 795
R I ++ + T ++ THN+Q
Sbjct: 189 VSTRKI--EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
EEQ VL +SL + G +VA++G GSGKS+L+N ILG
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG 55
|
Length = 648 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF-A 1301
++F ++ G + + G GAGK+++L L L + GQI +DG T R R RF A
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG----KTATRGDRSRFMA 85
Query: 1302 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE----EVEAVGL----ETFVKE 1353
+ P L+ +L ++L L K+ + VGL +T V++
Sbjct: 86 YLGHLP-----GLKADLSTL---ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ 137
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
S GQ++ + LAR L + + LDE AN+D + +++ IS+ + G ++T
Sbjct: 138 ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGS------------ 673
V+L LP + A+ G G+GK+SL+N+I G LT G I +G
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISG---LTRPQKGRIVLNGRVLFDAEKGICLP 72
Query: 674 -----IAYVPQ----VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 723
I YV Q P +R N+ +G + I ++G +
Sbjct: 73 PEKRRIGYVFQDARLFPHY---KVRGNLRYGMAKSMVAQFD----------KIVALLGIE 119
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAI 777
+ +LSGG++ R+A+ RA+ ++ ++D+ L+++D R + L+ I
Sbjct: 120 -PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 778 MGPHMLQKTRIL-CTHNVQAI-SAADMVVVMDKGQVKWIGS 816
IL +H++ I AD VVV+++G+VK G
Sbjct: 179 -------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 1255 IVGRTGAGKSSILNALFRLT-PICG-----GQILVDGLNIINTPVRDLRGRFAVVPQSPF 1308
I GR+GAGK+S++NA+ LT P G G++L D I P + R V Q
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQDAR 86
Query: 1309 LF-----EGSLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1360
LF G+LR + M D + V +G+E + S S
Sbjct: 87 LFPHYKVRGNLRYGMAKS-MVAQFDKI--------------VALLGIEPLLDRYPGSLSG 131
Query: 1361 GQRQLICLARALLKSSKVLCLDECTANVD 1389
G++Q + + RALL + ++L +DE A++D
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK------- 785
LSGGQ+ R+A+ARA+ + + D+ SA+D R IL +L+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-------LLKDINRELGL 192
Query: 786 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 819
T +L TH + + D V V+D G++ G+ ++
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAY 676
E + +S + G +A++GE GSGKS SILG +L + H SGSI +
Sbjct: 19 EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG--LLPSPAAAHPSGSILF 74
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
+L +++ +P S+ ++G GSGKS+LL + + + I G + Y
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 677 ----------VPQVPWILSG-TIRDNILFG-KNY---DPQSYSETLKACTLDVDISLMVG 721
V Q P +I DNI + K++ + + + ++ C V + V
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV- 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ LSGGQ+ RL +ARA+ + ++D+ S +D ++ I ++
Sbjct: 144 --YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITEL 199
Query: 782 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823
+ ++ +HN Q ++ AD V + G++ GSS ++ S
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSIHASGSIAYVPQ 679
L + L + +G +V ++GE G GKS+L GE++L ++ A Y
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD- 416
Query: 680 VPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ S D LF G++ + + L+ + + + GG
Sbjct: 417 ---LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG-----FSTT 468
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LS GQ+ RLAL A I + D+ + D R+ + KT I+ +
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528
Query: 792 HNVQAISAADMVVVMDKGQV 811
H+ Q AD ++ + G +
Sbjct: 529 HDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 687 TIRDNILFGKNYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
TI +I+FG P S + + A +VG D +Y+ LSGGQ+ R+ALA
Sbjct: 122 TIEKDIIFG----PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVV 804
+ D + D+ + +D Q + IL + KT IL TH++ + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 805 VMDKGQV 811
G++
Sbjct: 237 FFKDGKI 243
|
Length = 305 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG-- 672
LN +++ + K S+ A+IG G GKS+ L + I G ++ +I+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 724
I V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG----PKIHGTKDKK-KLDEIVEQSLKKSALW 137
Query: 725 AYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ +K ++LSGGQ+ RL +AR + ++ ++D+ SA+D ++ + I+
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINL 196
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
T I+ THN+ QA +D G ++ S+ +L
Sbjct: 197 KE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 613 CSWYCNNEEEQNV---VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
C C +E +V VL+ VS + +G ++A++G GSGKS+LL+ +LG +
Sbjct: 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGL-----DTP 61
Query: 670 ASGSIAYVPQVPWILSGTIR---DNILFGKNYDPQSYSETLKACTLDVDISLMVGGD--- 723
SG + + Q LS + N G Y A +V + L++G
Sbjct: 62 TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE-NVAMPLLIGKKKPA 120
Query: 724 ---------MAYIG-EKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
+A +G E N LSGG+R R+A+ARA+ + + + D+ +DA+
Sbjct: 121 EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
Query: 769 ARWILSNAIMGP-HMLQKTRIL-CTHNVQAISAADMVVVMDKGQVK 812
A I ++G + LQ T L TH++Q + M G++
Sbjct: 181 ADSIF--QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +NVT R + + DI+F++ G +G G G+G++ ++N LF + GG+I +
Sbjct: 267 EVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
Query: 1284 DGLNI-INTPVRDLRGRFAVVPQS-------------------PFLFEGSLRDNLDPFHM 1323
+G +I +P+ ++ A + +S L +G + + FH
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLD 1382
D+ + + + E + L+ I+ S G +Q + +++ L +V+ D
Sbjct: 383 VDEQRT--------AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 1383 ECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1435
E T +D A I + G ++ ++ + ++ + D I + G L +
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTR 787
++LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I A G T+
Sbjct: 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG-----ITQ 194
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSA 818
++ TH V+ A A VV M+ G + G ++
Sbjct: 195 VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 641 AVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------------------IAYVPQ 679
A+IG G GKS+ L +I M S H +G+ I V Q
Sbjct: 69 AIIGPSGCGKSTFLRAI-NRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 680 VPWILSGTIRDNILFGKNY----DPQSYSE----TLKACTLDVDISLMVGGDMAYIGEKG 731
P +I DNI +G D + E +L+ L ++S + +
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRIL 789
+ LSGGQ+ RL +AR + +I +LD+ SA+D + I L + G + T ++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY----TIMI 236
Query: 790 CTHNVQAIS 798
THN+Q S
Sbjct: 237 VTHNMQQAS 245
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VLN VSL L G VA++G G GKS+L ++G + G++ G
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 673 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
SI+ V P+ V I+ +R + K SE L+A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
LSGGQ R+ LARA+ + +LD+ +S +D + ++
Sbjct: 147 KRPP----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR---- 192
Query: 779 GPHMLQKTR-------ILCTHNVQAISA-ADMVVVMDKGQV 811
+L+K + + TH+++ + V+VMD GQ+
Sbjct: 193 ---LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 64/225 (28%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L V L + +G VA++G GSGKS+LL + G + G + G
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 673 ----SIAYVPQ---------------VPWILSGTIRDNILFGKNYDPQSYS-ETLKACTL 712
+ +V Q +P L G D ++ + L+A L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA--------DSRAGAKALLEAVGL 136
Query: 713 DVDISLMVGGDMA-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
G + Y + LSGG++ R+ALARA D+ D+ +D
Sbjct: 137 --------GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 772 ILS-----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
I N G T +L TH+ Q + D + + G++
Sbjct: 185 IADLLFALNRERG-----TTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 37/226 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSI----- 668
VL+QVS+ P ++ +++G GSGK++ L ++ G+++L SI
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 669 --HASGSIAYVPQVPWILSGTIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGG 722
+ + Q P +I DN+L G K + + +A +V + V
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIM 778
++ + LSGGQ+ L LAR + ++ +LD+ SA+D ++ +I S A
Sbjct: 156 RLS---DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 823
+ T I+ THN+ QA +D + G++ G + L S
Sbjct: 212 -----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPVRDLR 1297
L++I+ ++ GT ++G +GAGK+++L+ L + + G+IL++G + ++ +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL----DKNFQ 78
Query: 1298 GRFAVVPQSPFLFEGS-LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1356
V Q +R+ L F L+ GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALR-FSAL--LR-----------------GL--------- 109
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTVITI 1412
SV QR+ + + L +L LDE T+ +D+Q A L+ S G ++
Sbjct: 110 --SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS---GQAILCT 164
Query: 1413 AHRISTVL--NMDEILILDHG 1431
H+ S + D +L+L G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---------VPWILSG 686
G ++ ++G G GK++ + + G + GS ++Y PQ V +L
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYDGTVEDLLRS 424
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALA 745
IR +E +K L+ + E+ V LSGG+ R+A+A
Sbjct: 425 AIRSAFG-----SSYFKTEIVKPLNLE------------DLLERPVDELSGGELQRVAIA 467
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
A+ +D+Y+LD+ + +D + R I++ I
Sbjct: 468 AALSREADLYLLDEPSAYLDVE-QRIIVAKVI 498
|
Length = 591 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 676
+N +S+ + K ++ A+IG G GKS+ L SI M S + G I Y
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLNILDSNI 95
Query: 677 -----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 723
V Q P +I +NI Y E K+ LD V+ SL
Sbjct: 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA----GERRKS-VLDEIVEESLTKAAL 150
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA--- 776
+ ++ ++LSGGQ+ RL +AR + + +LD+ SA+D +SNA
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP------ISNAKIE 204
Query: 777 -IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
++ + + I+ THN+ QA+ +D G +
Sbjct: 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 1223 IEFQNVTMRYK----PS--------------LPAALHDINFTIEGGTQVGIVGRTGAGKS 1264
++F++VT +YK P AL++I+F + G VGI+G G+GKS
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 1265 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1324
++ N L+ G+ + N D++G A++ S L L N
Sbjct: 65 TLSN-------------LIAGVTMPNKGTVDIKGSAALIAIS-----SGLNGQLTGIE-N 105
Query: 1325 DDLK-IWSVLEKCHVKE----EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379
+LK + L K +KE +E + F+ + ++S G + + A ++ + +L
Sbjct: 106 IELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL 165
Query: 1380 CLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+DE + D T L + +G T+ I+H +S V + + L L +G + E G
Sbjct: 166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225
Query: 1438 N 1438
+
Sbjct: 226 D 226
|
Length = 549 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 1254 GIVGRTGAGKSSILNALFR--LTPI------------CGGQILVDGLNIINTPVRDLRGR 1299
G++G+TGAGKSS+ NALF + + Q DGL +++ P RGR
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 1300 F 1300
Sbjct: 61 R 61
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
++ + L+ +SL +G ++ ++G GSGKS+L N I G + T G + +G ++ V
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS-V 89
Query: 678 PQVPWILSGTIR--DNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ LSG + +NI F + + +KA T + I G+ Y K
Sbjct: 90 IAISAGLSGQLTGIENIEFKMLCMGFKRKE----IKAMTPKI-IEFSELGEFIYQPVK-- 142
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
S G RA+L + + DI ++D+ LS D A+ L + I KT +H
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVSH 201
Query: 793 NVQAI 797
N+ +
Sbjct: 202 NLGQV 206
|
Length = 264 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 1250 GTQVGIVGRTGAGKSSILNALF-RLTP--ICGGQILVDGLNIINTPVR--------DLRG 1298
GT ++G +GAGK+++LN L R+T I GG LV+G + ++ R DL
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETF----VKE 1353
+ V +S F LR P + S EK EEV + + +E++ V
Sbjct: 849 PTSTVRES-LRFSAYLRQ---PKSV-------SKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLC-LDECTANVDAQTA-SILQNAISSECKGMTVIT 1411
G +V QR+ + + L+ K+L LDE T+ +D+QTA SI + G ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 1412 IAHRISTVL--NMDEILILDHG 1431
H+ S +L D +L+L G
Sbjct: 958 TIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 92/375 (24%), Positives = 151/375 (40%), Gaps = 66/375 (17%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT----LLTKIVNAPVLFFDQ-- 992
S Y++V+ I MF S TL ++ G KV T L I+ + FFDQ
Sbjct: 869 SLYILVIAI-AMFIS-ETLKNYYNNVIGE-----KVEKTMKRRLFENILYQEISFFDQDK 921
Query: 993 -TPGGRILNRFSSDLYMIDDSLPFILNILL-ANFVGLLGIAVVLS-YVQVFFLLLLVPFW 1049
PG + + D++++ L + NI++ +F+ L +++V+S Y +L +
Sbjct: 922 HAPG-LLSAHINRDVHLLKTGL--VNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978
Query: 1050 FIYSKLQFFYR-----STSRELRRLDSVSRSPIYASFTETLNGSS-----------TIRA 1093
FI+ ++ F R + E + ++ Y S E S T+
Sbjct: 979 FIFMRV-FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037
Query: 1094 FKSEDYFMAKFKEHVVLYQRTSYSELT---ASLW-LSLRLQLLAAFIISFIATM-AVIGS 1148
+ EDYF E + Y T + LW S QL FI SF + +
Sbjct: 1038 YGLEDYF-CNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQL---FINSFAYWFGSFLIR 1093
Query: 1149 RGNLPATFSTPGLVGLAL--SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM------ 1200
RG + L SYA ++SL G ++E +S E+ +
Sbjct: 1094 RGTILVDDFMKSLFTFLFTGSYAGKLMSLKG-------DSENAKLSFEKYYPLIIRKSNI 1146
Query: 1201 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGR 1258
DV G + +G IE +V RY +P++P D+ F+ + IVG
Sbjct: 1147 DVRDN---GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-YKDLTFSCDSKKTTAIVGE 1202
Query: 1259 TGAGKSSILNALFRL 1273
TG+GKS++++ L R
Sbjct: 1203 TGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGK++LL I G + G++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMMLTHGSIHASG------- 672
L +++ + KG + A++G G+GKS+L LN IL G ++ I S
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 673 -SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
S+ V Q P + S ++ ++ FG + VD +L G + ++ +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKLPEDEVRKRVDNALKRTG-IEHLKD 136
Query: 730 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
K + LS GQ+ R+A+A + + +LD+ + +D I+ + L T I
Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
Query: 789 LCTHNVQAISA-ADMVVVMDKGQV 811
+ TH++ + D V VM +G+V
Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1252 QVGIVGRTGAGKSSILNALFR 1272
+V +VGR GKS+++NAL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL--------GEMMLTHGSIHA-- 670
E + +L V L + +G +A+IGE GSGKS+LL +IL GE+ L +H
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMD 78
Query: 671 --------SGSIAYVPQVPWILSGTI--RDNI-----LFGKNYDPQSYSETLKACTLDVD 715
+ + +V Q ++L T+ +N+ L G++ QS +
Sbjct: 79 EEARAKLRAKHVGFVFQ-SFMLIPTLNALENVELPALLRGES-SRQSRNGAKALLE---- 132
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
L +G + ++ + LSGG++ R+ALARA D+ D+ +D Q I
Sbjct: 133 -QLGLGKRLDHLPAQ---LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 776 AIMGPHMLQKTRILCTHNVQ 795
T IL TH++Q
Sbjct: 189 LFSLNREHGTTLILVTHDLQ 208
|
Length = 228 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRI- 788
LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I L +T I
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII--------RELAETGIT 193
Query: 789 --LCTHNVQ-AISAADMVVVMDKGQV 811
+ TH V+ A A VV M+ G +
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----H--ASGSIAYVPQVPWI 683
+S L +G +A+IGE GSGKS+L + G + T G + H G +Y Q
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ---- 87
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG-EKGVN--------- 733
R ++F DP + + + +D L + D+ EK +
Sbjct: 88 -----RIRMIF---QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 734 ----------LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
L+ GQ+ RL LARA+ + + D+ L+++D + R L N ++ L
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM-RSQLINLML---EL 195
Query: 784 QKTR----ILCTHNV---QAISAADMVVVMDKGQVKWIGSSADLAVS 823
Q+ + I T ++ + IS D V+VM +G+V GS+AD+ S
Sbjct: 196 QEKQGISYIYVTQHLGMMKHIS--DQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 674
WY + +N+ L+ + + + A+IG G GKS+ + + L M+ S+ +G I
Sbjct: 33 WYGEDHALKNINLD-----IHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKI 86
Query: 675 AY---------------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713
Y V Q P +I DN+ +G P+ + K TLD
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKK-TLD 141
Query: 714 --VDISLMVGG----------DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
V+ SL D AY LSGGQ+ RL +AR + D+ ++D+
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAY------GLSGGQQQRLCIARCLAIEPDVILMDEPT 195
Query: 762 SAVD 765
SA+D
Sbjct: 196 SALD 199
|
Length = 271 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
VG D G+ V+LSGGQ+ R+++ARA+ ++ + D+ SA+D ++ +L IM
Sbjct: 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQ 196
Query: 780 PHMLQ-KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ KT ++ TH + A + V+ + +G+++ G+ L
Sbjct: 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 674
++++++ + + A +G G+GK++ L+ + G + T G++ G S+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 675 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
PQ + T+ ++ILF +S+ E L+++ L G E+ +
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGG + +L++A A + + +LD+ S VD R I ++ + +T I+ TH+
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD--LLLKYRSGRTIIMSTHH 1119
Query: 794 V-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
+ +A D + ++ +G++ G+ L +GF+ T
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLT 1158
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668
VL VSL + G VA+ G G+GKS+LL S+ + G I
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 628 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGKS+LL + G + HG+
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 49/181 (27%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+GSL + G GSGKS++L++I L G +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIG-----------------------LALGGA-QSATR 53
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV----Y 749
+ ++ LSGG++ ALA +
Sbjct: 54 RRSGVKAGCIV-----AAVSAELIFTRLQ-----------LSGGEKELSALALILALASL 97
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNVQAISAADMVVVMD 807
+Y+LD++ +D + + L+ AI+ L K I+ TH + AD ++ +
Sbjct: 98 KPRPLYILDEIDRGLDPRDGQ-ALAEAIL--EHLVKGAQVIVITHLPELAELADKLIHIK 154
Query: 808 K 808
K
Sbjct: 155 K 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 1216 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLT 1274
D P +I F + + Y P P ++NF I+ +++ +VG G GKS+IL + L
Sbjct: 502 DRPGPPIISFSDASFGY-PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560
Query: 1275 PICG-------------GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF 1321
P G Q VDGL++ + P+ + F VP E LR +L F
Sbjct: 561 PSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------EQKLRAHLGSF 614
Query: 1322 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+ +L + + + S GQ+ + A+ K +L L
Sbjct: 615 GVTGNLAL-----------------------QPMYTLSGGQKSRVAFAKITFKKPHILLL 651
Query: 1382 DECTANVD 1389
DE + ++D
Sbjct: 652 DEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
L+AV+GE +GKS+LLN++LGE +L G + I +
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVL 40
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 31/218 (14%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSILGEMMLTHGSIHASG----------- 672
L +++ + + + A+IG G GKS+ L N + ++ G + G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 673 --SIAYVPQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 723
++ V Q P + +I +NI + KN D + + C V + V
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEE--ALVVDCLQKVGLFEEVKDK 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ + + LSGGQ+ RL +ARA+ + +LD+ SA+D + I H L
Sbjct: 136 LK---QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 784 QKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ THN+ Q AD G++ G S +
Sbjct: 193 --SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 32/164 (19%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGSIHA-S 671
+L+ +SL P G + +IG GSGKS+LL +L L S A +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84
Query: 672 GSIAYVP-QVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISLMVGG 722
+AY+P Q+P T+R+ + G+ + + +A +L VG
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL-------VG- 136
Query: 723 DMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ + + V+ LSGG+R R +A V S +LD+ SA+D
Sbjct: 137 -LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+ VSL + G +V ++G G+GK++ ++G + G+I A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 672 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I Y+PQ I ++ DN++ +E + D LM + ++ +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDS 133
Query: 731 -GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
G +LSGG+R R+ +ARA+ +LD+ + VD
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ +T Y + A+ + + G G++G GAGK++ L T + G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKE 1340
V G +I+ T + D+ PQ D +D + L +++ L +E
Sbjct: 1997 TVAGKSIL-TNISDVHQNMGYCPQF---------DAIDDLLTGREHLYLYARLRGVPAEE 2046
Query: 1341 -------EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
++++GL + ++S G ++ + A AL+ ++ LDE T +D Q
Sbjct: 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
Query: 1394 SILQNAISSECK-GMTVITIAHRI 1416
+L N I S + G V+ +H +
Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1296
L + ++ G + ++G +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 1297 RGR--------FAVVP--------QSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
R + F ++P + P L G S R + + K
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----------------RNGAK 128
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+E +GL + S G++Q + LARA VL DE T N+D QT + +
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 1400 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436
+ S + G T+I + H + D L L +G L E+
Sbjct: 189 LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS---GTIRDNI 692
+G ++ ++G G GK++ + G + G + I+Y PQ +I GT+ D +
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIKPDYDGTVEDLL 421
Query: 693 -----LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALAR 746
G +Y SE +K L+ L+ +K V LSGG+ R+A+A
Sbjct: 422 RSITDDLGSSY---YKSEIIKPLQLE---RLL---------DKNVKDLSGGELQRVAIAA 466
Query: 747 AVYHGSDIYMLD 758
+ +D+Y+LD
Sbjct: 467 CLSRDADLYLLD 478
|
Length = 590 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ L +S+ ++ + G G GKSSLL I G M + G+I+ P+
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 683 I----------LSGTIRDNILF-GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
L T+ +N+ F + Y+ A TL I D+ + EK
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDL--LDEKC 121
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
+LS G + +A+AR + SD+++LD+V + + + R +L+N I
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-NRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 1242 DINFTIEGGTQV-GIVGRTGAGKSSILNA----LFRLTPICGGQILVD 1284
DI+ + + IVG GAGKSSIL+A L+ TP G L D
Sbjct: 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDD 63
|
Length = 908 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------------IA 675
VS + G ++ + G VG+G++ L ++ G + G I G IA
Sbjct: 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337
Query: 676 YVP----QVPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGD 723
YVP +L +I +NI D + + + I
Sbjct: 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI------K 391
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ LSGG + ++ LAR + + +LD+ +D
Sbjct: 392 TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILC 790
SGGQR R+A+ARA+ D+ + D+ +SA+D V +L N +M LQ+ + +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMD---LQQELGLSYVFI 211
Query: 791 THN---VQAISAADMVVVMDKGQVKWIGSSADL 820
+H+ V+ I AD V+VM G+ G+ +
Sbjct: 212 SHDLSVVEHI--ADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASGSIAY 676
++ V N V+L + +G++ A+IG G GK++ L +I LT G I G Y
Sbjct: 16 DKQAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 677 VPQVPWIL----------------SGTIRDNILFG------KNYDP--QSYSETLKACTL 712
P+V + + ++ DN++ G ++ D + +L+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQVARW 771
++ + LSGGQ+ RL +ARA+ +I ++D+ SA+D A AR
Sbjct: 135 WDEVK-------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR- 186
Query: 772 ILSNAIMGPHMLQKTRILCTHNV-QAISAAD 801
+M T I+ THN+ QA +D
Sbjct: 187 --IEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASGS------ 673
++ +LN V+ G ++AV+G GSGKS+LLN++ G + + G+I A+
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQI 138
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISL--MVGGD 723
+V Q P + T+R+ ++F P+S ++ K + IS + +
Sbjct: 139 LKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 724 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
IG + +SGG+R R+++A + + +LD+ S +DA A ++ +
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG---SL 252
Query: 783 LQKTRILCTHNVQAISAA----DMVVVMDKGQVKWIGSSAD 819
QK + + T Q S D V+V+ +G+ + G +D
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE--MMLTHGSI 668
+L V+L + KG + A++G GSGKS+L +I G +T G+I
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 50/190 (26%), Positives = 70/190 (36%), Gaps = 61/190 (32%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-----------GEMMLTHGSIHASGSIA 675
L + + +P G L V G GSGKSSL+N L E H I I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 676 YVPQV------------PWILSG---TIRDNILF-----GKNYDPQSYSETLK----ACT 711
V + P +G IR+ LF GK Y+ ++ K A
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 712 LDVDI------------------SLM-VGGDMAYIGEKGVNLSGG--QRARLA--LARAV 748
LD+ + +L VG +G+ LSGG QR +LA L++
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 749 YHGSDIYMLD 758
G +Y+LD
Sbjct: 189 -TGKTLYILD 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 56/293 (19%)
Query: 537 TCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGL 596
T L L L+S + + P L+ A ++ +L + + YK E
Sbjct: 271 TLLFLRTPLLSAVGALP----TLLSAQVAFNKLNKL-ALAPYKAEFP--------RPQAF 317
Query: 597 SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656
++ + + +++ T ++ ++ + ++L + +G L+ +IG GSGKS+L
Sbjct: 318 PDWQT----LELRNVTFAY-----QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--- 365
Query: 657 ILGEMMLTHGSIHASGSIAYVPQVP----------WILSGTIRDNILF-------GKNYD 699
M+LT SG I + P + S D LF GK +
Sbjct: 366 ---AMLLTGLYQPQSGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN 421
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
P + L+ + + L G ++ + LS GQ+ RLAL A+ DI +LD+
Sbjct: 422 PALVEKWLERLKMAHKLEL-EDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDE 475
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQ--KTRILCTHNVQAISAADMVVVMDKGQ 810
+ D R ++ P + + KT +H+ AD ++ M GQ
Sbjct: 476 WAADQDPHFRREFYQ--VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526
|
Length = 547 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1459 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-257 Score=2444.27 Aligned_cols=1237 Identities=42% Similarity=0.704 Sum_probs=1137.4
Q ss_pred CCCCCCCCh--hHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhH
Q 000503 202 TDSGNNQSY--WDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGY 279 (1459)
Q Consensus 202 ~~~e~~~~~--~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~ 279 (1459)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++++++.+.++|++.|+++.++++++|+++++++++|+|
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 345555555 999999999999999999999999999999999999999999999999874434578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 280 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358 (1459)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i 358 (1459)
+++..++++++.+...|++|.+++.++++++++ .+.+.||+++++++++.++++++.++|+|...++|+++|+++.++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999884 5678899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000503 359 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI 438 (1459)
Q Consensus 359 y~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~ 438 (1459)
|+|+|+++...+++.+.|+++|+|++|++|+.++..++|.+|.+|+|+++++++||.++|+++++|++++++++|+|.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 439 ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLF 518 (1459)
Q Consensus 439 ~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1459)
+++++++|++.|+.+|+|+++|+|+|+|||+|||||||+.|.++|++.|++|++.++|..++.+++.+++.+.|++++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCc
Q 000503 519 TFGLFA-LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS 597 (1459)
Q Consensus 519 ~f~~~~-~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 597 (1459)
+|++|+ ..++.++++++|+++++|++++.|+.++|..+..++++.+|++|+++||..+|.++..... .+.
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~--~~~------- 512 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER--SPD------- 512 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc--CCC-------
Confidence 999999 7788999999999999999999999999999999999999999999999998876632110 011
Q ss_pred ccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCcEEEE
Q 000503 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677 (1459)
Q Consensus 598 ~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~ 677 (1459)
...+.+++++|++|+|+++++++ .|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||
T Consensus 513 --~~~~~~i~i~~~sfsW~~~~~~~---tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv 587 (1381)
T KOG0054|consen 513 --EAGENAIEIKNGSFSWDSESPEP---TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYV 587 (1381)
T ss_pred --CCCCceEEEeeeeEecCCCCCcc---cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEe
Confidence 23456799999999999754434 4999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEE
Q 000503 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757 (1459)
Q Consensus 678 ~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illl 757 (1459)
||+|||+||||||||+||.+||++||++|+++|+|++|++.+|+||+|+|||+|.||||||||||+||||+|+++|||||
T Consensus 588 ~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL 667 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL 667 (1381)
T ss_pred ccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchh
Q 000503 758 DDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837 (1459)
Q Consensus 758 De~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 837 (1459)
|||+||||+||++|||++|+.| .+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++..+.+.+
T Consensus 668 DDplSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~ 746 (1381)
T KOG0054|consen 668 DDPLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESE 746 (1381)
T ss_pred cCcchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchh
Confidence 9999999999999999999977 889999999999999999999999999999999999999997666555432111111
Q ss_pred hhhh--hhhhccccc---c---hhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhh-hhHHHHHHHHHHH
Q 000503 838 LHMQ--KQEMRTNAS---S---ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF-SGWFITLVICLSA 908 (1459)
Q Consensus 838 ~~~~--~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~-~g~~~~~~~~~~~ 908 (1459)
.... ....+.... . ..+.....+++.....++..+..++|+++.|.+++++|+.|+++ .|+....+++++.
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~ 826 (1381)
T KOG0054|consen 747 QEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLF 826 (1381)
T ss_pred hccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHH
Confidence 0000 000000000 0 00000000111111112234566778889999999999999998 5677777777888
Q ss_pred HHHHHHHhhhhhhhhhhccccCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 000503 909 ILMQASRNGNDLWLSYWVDTTGSSQTK-YSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987 (1459)
Q Consensus 909 ~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~ 987 (1459)
++.+++..+.++||++|++........ .+..+|+++|++++++..++.+++++.+...+.++++++|++|+++++|+||
T Consensus 827 v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm 906 (1381)
T KOG0054|consen 827 VLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPM 906 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999875432221 4678999999999999999999999999999999999999999999999999
Q ss_pred ccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067 (1459)
Q Consensus 988 ~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~ 1067 (1459)
+|||+||+|||+||||+|++.+|..+|..+..++.+++.++++++++++..|+++++++|+.++|++++++|++++||++
T Consensus 907 ~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLk 986 (1381)
T KOG0054|consen 907 SFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELK 986 (1381)
T ss_pred hhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000503 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG 1147 (1459)
Q Consensus 1068 ~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~ 1147 (1459)
|+++.+|||+|+||+|+++|+.|||||+.|++|.+++.+++|.+++++|...+.+||+++|+|+++++++.++++++++.
T Consensus 987 RLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~ 1066 (1381)
T KOG0054|consen 987 RLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL 1066 (1381)
T ss_pred HhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888764
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc--cccCCCCCCCCCCCccEEE
Q 000503 1148 SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE--LCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1148 ~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~--~~~~~~~~~~wp~~g~I~f 1225 (1459)
... ..++|.+|++++|++++++.++|++++.+++|+.|+|+||+.||.++|+|+ ......||++||.+|+|+|
T Consensus 1067 ~~~-----~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f 1141 (1381)
T KOG0054|consen 1067 PSG-----LISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEF 1141 (1381)
T ss_pred cCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEE
Confidence 321 145999999999999999999999999999999999999999999998883 1222337889999999999
Q ss_pred EEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
+|++++|+|+.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||+++++|||
T Consensus 1142 ~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1142 EDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred EEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000503 1306 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1383 (1459)
||+||+||+|+||||+++++|++||+||++|+|++.++++ |||+.|.|+|.|||.||||++||||||||++|||+|||
T Consensus 1222 dPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDE 1301 (1381)
T KOG0054|consen 1222 DPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDE 1301 (1381)
T ss_pred CCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEec
Confidence 9999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1384 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1384 aTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
|||++|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.+.+
T Consensus 1302 ATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1302 ATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred ccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-209 Score=2120.58 Aligned_cols=1428 Identities=31% Similarity=0.526 Sum_probs=1181.3
Q ss_pred CccCCCCcc-ccccc------cccchhhhHHHHHHhhhHHHH-HHhhhc-ccc-cCCCccchhhHHHHHHHHHHHHHHHH
Q 000503 2 DFICPNSPF-VWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-ITQ-RSPRQNQRINLMEKVFLHILPLVGAC 71 (1459)
Q Consensus 2 ~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~ 71 (1459)
+-+|+.... +|.+. .+.+||++..+..+++..... ..+.+- .++ .+...+..+..+.|+.+.++++..++
T Consensus 7 ~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1622)
T PLN03130 7 DWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTA 86 (1622)
T ss_pred hhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHH
Confidence 347964322 35553 466999995444444433332 111111 111 12222233366666666555544333
Q ss_pred HHHHHHHHH---HHHhcc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhH
Q 000503 72 LSSVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLV 143 (1459)
Q Consensus 72 ~~~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt 143 (1459)
..++..... ..+... +.+..+.. +++.++..++++++.++.+.||.|+.+++..+.+||++. +++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 163 (1622)
T PLN03130 87 EPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVL--- 163 (1622)
T ss_pred HHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHH---
Confidence 333221111 111110 11122333 666788888888888889999999999999999999998 7777662
Q ss_pred Hhhhhhhhh---hhhHHHHHHHHHHHHHHH-HHHHhhcccCccccc---ccccccCCC-CCCCCCCCCCCCCCChhHHHH
Q 000503 144 TFSSFEVLK---CLKEICLVLLDIMFGISI-NIIRVKRASSRRSSI---EESLLSVDG-DVEEDCNTDSGNNQSYWDLMA 215 (1459)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~e~~~~~~s~~~ 215 (1459)
...+.... .. ....+++.+++.++. ++.+..++.+ .+. .+...+.++ ......+.+||+++|+|||++
T Consensus 164 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~ 239 (1622)
T PLN03130 164 -SVKEYYSSFVLYL-YISEVAAQVLFGILLLVYFPNLDPYP--GYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIF 239 (1622)
T ss_pred -HHHHHHhccccce-ehhHHHHHHHHHHHHHHHHhcCCCCc--ccccccccccccccccCCcccCCCCcccccCHHHHHH
Confidence 11111111 11 122232333333332 2222222211 110 000000000 001234678999999999999
Q ss_pred HHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000503 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIG 295 (1459)
Q Consensus 216 f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 295 (1459)
|||++|++++|||++|+.+|||+++++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++..++.
T Consensus 240 F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL-K-KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 2 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh
Q 000503 296 FAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD 375 (1459)
Q Consensus 296 ~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~ 375 (1459)
+++|++++.+++++.++...+.++++++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999764444567777777777777777777888888899999999999999999999999998888899
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 376 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455 (1459)
Q Consensus 376 g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 455 (1459)
|+++|+|++|++++.+....+|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.++++++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHH
Q 000503 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 535 (1459)
Q Consensus 456 R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ 535 (1459)
|.+.++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcccCCCCceEEEEcceEec
Q 000503 536 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 615 (1459)
Q Consensus 536 ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w 615 (1459)
|+++++++.+..|+..+|..+..+.++++|++||++||..+|..+... .+. ......|+++|++|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~----~~~---------~~~~~~I~~~nvsf~y 624 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN----PPL---------EPGLPAISIKNGYFSW 624 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC----Ccc---------cCCCCceEEEeeEEEc
Confidence 999999999999999999999999999999999999998765422100 000 0112469999999999
Q ss_pred cCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC-eEEEEcCcEEEEcCCCCCCCCCHHHHhcc
Q 000503 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAYVPQVPWILSGTIRDNILF 694 (1459)
Q Consensus 616 ~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~-G~i~~~~~i~y~~Q~~~l~~~ti~~nI~~ 694 (1459)
+++++ +++|+|+||++++|++++|+||+|||||||+++|+|+++|++ |+|.++++||||+|+|||||+||||||+|
T Consensus 625 ~~~~~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 625 DSKAE---RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred cCCCC---CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhC
Confidence 75422 345999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHH
Q 000503 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774 (1459)
Q Consensus 695 g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~ 774 (1459)
|+++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|++
T Consensus 702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhh--hhccc-ccc
Q 000503 775 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ--EMRTN-ASS 851 (1459)
Q Consensus 775 ~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~ 851 (1459)
+|+.+ .++++|+|+|||+++.++.||+|++|++|+|+++|+++|+.+..+.+..+..+.....+.... +.... ...
T Consensus 782 ~~l~~-~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1622)
T PLN03130 782 KCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSS 860 (1622)
T ss_pred HHhhH-HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccc
Confidence 98766 567899999999999999999999999999999999999987654443322111000000000 00000 000
Q ss_pred hhh-h---hhhhcccc--cCCCcchhhhhHHHHHhcccchHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000503 852 ANK-Q---ILLQEKDV--VSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSY 924 (1459)
Q Consensus 852 ~~~-~---~~~~~~~~--~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~ 924 (1459)
... . ........ .+..+......++|+++.|.+++++|++|+++.| ++..++++++.++.++...++++|+++
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 940 (1622)
T PLN03130 861 KPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940 (1622)
T ss_pred ccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000000 0000011223456778899999999999999865 334444455666778888899999999
Q ss_pred hccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhh
Q 000503 925 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1004 (1459)
Q Consensus 925 w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~ 1004 (1459)
|++.... ......+|+++|++++++..++.+++.+++...+.+++.++|++++++++++|++||+++|+|+|+|||++
T Consensus 941 w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~ 1018 (1622)
T PLN03130 941 WTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAK 1018 (1622)
T ss_pred HHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHH
Confidence 9975321 12234568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhh
Q 000503 1005 DLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1084 (1459)
Q Consensus 1005 D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~ 1084 (1459)
|++.+|..++..+..++..++.+++.++++++..|+.+++++|+.++++.++++|.+++|++++++.++++|+++|+.|+
T Consensus 1019 Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Et 1098 (1622)
T PLN03130 1019 DLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEA 1098 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999988888888888888888898888888899999999999999999999999999999
Q ss_pred hccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 000503 1085 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGL 1164 (1459)
Q Consensus 1085 l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl 1164 (1459)
++|+.|||+|+++++|.+++.+..+.+++..+.....++|++.++++++++++.+.+.+.+... +........++.+|+
T Consensus 1099 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~-~~~~~~~~~~~~~G~ 1177 (1622)
T PLN03130 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQN-GRAENQAAFASTMGL 1177 (1622)
T ss_pred hCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccccchhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999888766655544444321 110011123678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEecCCCCcccee
Q 000503 1165 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1242 (1459)
Q Consensus 1165 ~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~ 1242 (1459)
+++|++.+...++++.+.+.++|+.++|++|+.+|.+.|+|+.. +...+++.||.+|.|+|+||+|+|+++.++||+|
T Consensus 1178 ~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~ 1257 (1622)
T PLN03130 1178 LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1257 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecc
Confidence 99999999999999999999999999999999999998887532 2234556799999999999999998877789999
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC
Q 000503 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH 1322 (1459)
Q Consensus 1243 isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~ 1322 (1459)
+||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+|||||||||++
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHH
Q 000503 1323 MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400 (1459)
Q Consensus 1323 ~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I 1400 (1459)
+++|+|+|+|+++|+++++++++ ||||.++|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1401 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1401 ~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
++.+++||+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|
T Consensus 1418 ~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1418 REEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred HHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999987889999999887
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-209 Score=2124.73 Aligned_cols=1407 Identities=31% Similarity=0.516 Sum_probs=1196.2
Q ss_pred ccchhhhHHHHHHhhhHHHH-HHhhhc-ccccCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc-c
Q 000503 17 FSKCFDDMILDFATNMVTIF-IILIIG-ITQRSPR-QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVS-Y 92 (1459)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 92 (1459)
+.+||.+..+..+++.++.+ ....+- ..++..+ ....+.+..|++...++++ ++++. ++...|..+....+ +
T Consensus 23 ~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 23 FTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWI---VCWAD-LFYSFWERSHGRAPAP 98 (1522)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHH---HHHHH-HHHHHHhccccccccc
Confidence 55999998887766666555 221111 1122222 4455667778776655433 33322 23333433222222 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhHHhhhhhhhhh--hh-HHHHHHHHHHHHHH
Q 000503 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKC--LK-EICLVLLDIMFGIS 169 (1459)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~rt~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 169 (1459)
.+++++++.++++++++++++.||.|+.|||.++.+||++++++|++++||+|........ .. ....+++.++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999875321100 00 12333344444544
Q ss_pred HHHHHh-hcccCcccccccccccCCCCCCCCCCCCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHH
Q 000503 170 INIIRV-KRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTC 248 (1459)
Q Consensus 170 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~ 248 (1459)
.++.+. .++++ .+.+.. ...+.+||+++|++||++|||+||++++|||++|+.+|||+++++++++.+
T Consensus 179 ~~~~~~~~~~~~--------~~~~~~---~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~ 247 (1522)
T TIGR00957 179 QLVLSCFSDKSP--------LFSETN---HDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMV 247 (1522)
T ss_pred HHHHHhhcCCCC--------cccccc---ccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHH
Confidence 433332 22222 111100 112468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc---------------------------------------CCCCcchHHHHHHHHhHHHHHHHHHHH
Q 000503 249 HSKLLSCWQAQRSC---------------------------------------NCTNPSLVRAICCAYGYPYICLGLLKV 289 (1459)
Q Consensus 249 ~~~~~~~w~~~~~~---------------------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l 289 (1459)
.++|++.|+++.++ +.++++|+++++++|++.++..+++++
T Consensus 248 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l 327 (1522)
T TIGR00957 248 VPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKA 327 (1522)
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999875310 113478999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000503 290 VNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLA 368 (1459)
Q Consensus 290 ~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~ 368 (1459)
+.+++.+++|++++.+++++.++ .+.+.||++++++++++++.+++.++|.|...+++.++|++|+..||+|+|+++..
T Consensus 328 ~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~ 407 (1522)
T TIGR00957 328 IHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNS 407 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999999763 34456899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 369 ERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 448 (1459)
Q Consensus 369 ~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 448 (1459)
.+++.++|+++|+|++|++++..+...+|.+|..|++++++++++|.++|+++++|++++++++|++.++++++++.+++
T Consensus 408 ~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 487 (1522)
T TIGR00957 408 ARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVA 487 (1522)
T ss_pred hcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 000503 449 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALM-- 526 (1459)
Q Consensus 449 ~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-- 526 (1459)
+++.+|+|++.++|+++|||+||++|||+.+.+++++.|++|++..++..+...+..+.+...|.++.+++|++|.+.
T Consensus 488 ~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 567 (1522)
T TIGR00957 488 HMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDE 567 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888887778888888889999999876
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcccCCCCceE
Q 000503 527 GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAV 606 (1459)
Q Consensus 527 ~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 606 (1459)
++.|+++.+|+++++++++..|+..+|..++.+.++++|++||++||+.++.++..... .... ......+
T Consensus 568 ~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~-~~~~---------~~~~~~i 637 (1522)
T TIGR00957 568 NNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER-RTIK---------PGEGNSI 637 (1522)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc-cccC---------CCCCCcE
Confidence 46799999999999999999999999999999999999999999999876543211000 0000 0112369
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCcEEEEcCCCCCCCC
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~~~l~~~ 686 (1459)
+++|++|+|+.+ + +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||+|+||++++
T Consensus 638 ~~~~~~~~~~~~-~---~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 638 TVHNATFTWARD-L---PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred EEEEeEEEcCCC-C---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 999999999742 1 245999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccH
Q 000503 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766 (1459)
Q Consensus 687 ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~ 766 (1459)
||||||.||.++|+++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++|+|++||||||+||+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-cccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhccccCcccccccch--hh---hh
Q 000503 767 QVARWILSNAIMG-PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDT--SL---HM 840 (1459)
Q Consensus 767 ~~~~~i~~~~~~~-~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~--~~---~~ 840 (1459)
++++++++.++.. ...+++|+|+|||+++.++.||+|++|++|+++++|+++++.+..+.+.....+... .. +.
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 873 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLED 873 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccc
Confidence 9999999986521 145789999999999999999999999999999999999997654433322110000 00 00
Q ss_pred h------hhhhcc-------cc---cchhh-h------h--hh---h---cc--cccCCCcchhhhhHHHHHhcccchHH
Q 000503 841 Q------KQEMRT-------NA---SSANK-Q------I--LL---Q---EK--DVVSVSDDAQEIIEVEQRKEGRVELT 887 (1459)
Q Consensus 841 ~------~~~~~~-------~~---~~~~~-~------~--~~---~---~~--~~~~~~~~~~~~~~~e~~~~g~v~~~ 887 (1459)
. .+..+. .. ..+.. . . .. . .. +..+..+...+..++|.++.|.++++
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 953 (1522)
T TIGR00957 874 SWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELS 953 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHH
Confidence 0 000000 00 00000 0 0 00 0 00 00000001123445677888999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1459)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1459)
+|++|+++.|+...++++++.++.+++..++++|+++|++......+.....+|+++|++++++..++.++..+++.+.+
T Consensus 954 ~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~ 1033 (1522)
T TIGR00957 954 VYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGG 1033 (1522)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776666677777788889999999999975321112233456788999999999998888888889999
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 000503 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1459)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1459)
.++++++|++++++++++|++||+++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++..|+++++++|
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~ 1113 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPP 1113 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888889999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1459)
Q Consensus 1048 l~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1127 (1459)
+.++++.++++|.+++|++++++.++++|+++++.|+++|+.|||+||+|++|.+++.+..|.++++.+.....++|+..
T Consensus 1114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1522)
T TIGR00957 1114 LGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAV 1193 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 000503 1128 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL 1207 (1459)
Q Consensus 1128 ~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~ 1207 (1459)
++++++.+++.+++.+.++. .+..++|.+|++++|+..+..++.++++.++++|+.++|++|+.+|.+.|+|+.
T Consensus 1194 ~~~~~~~~~~~~~~~~~v~~------~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1194 RLECVGNCIVLFAALFAVIS------RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99998776555544444321 134578999999999999999999999999999999999999999998887753
Q ss_pred c--cCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECC
Q 000503 1208 C--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285 (1459)
Q Consensus 1208 ~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG 1285 (1459)
. +...++++||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+++|++|+|.|||
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1 22345567999999999999999987767899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHH
Q 000503 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1363 (1459)
Q Consensus 1286 ~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQr 1363 (1459)
+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+|+++|+++++++++ ||||.++|+|.+||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHh
Q 000503 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
||+||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++++++||||+|||+|+|+|+|+|+||+
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHhhCC
Q 000503 1444 QDECSVFSSFVRASTM 1459 (1459)
Q Consensus 1444 ~~~~~~f~~l~~~~g~ 1459 (1459)
++ +|.|++|++++|.
T Consensus 1508 ~~-~~~f~~l~~~~g~ 1522 (1522)
T TIGR00957 1508 QQ-RGIFYSMAKDAGL 1522 (1522)
T ss_pred hC-CCHHHHHHHHcCC
Confidence 97 5899999999884
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-205 Score=2085.96 Aligned_cols=1429 Identities=30% Similarity=0.517 Sum_probs=1175.4
Q ss_pred cCCCCc-cccccc------cccchhhhHHHHHHhhhHHHH-HHhhhc-c-cccCCCccchhhHHHHHHHHHHHHHHHHHH
Q 000503 4 ICPNSP-FVWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-I-TQRSPRQNQRINLMEKVFLHILPLVGACLS 73 (1459)
Q Consensus 4 ~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 73 (1459)
+|+... ..|.+. .+.+||++..+...++..... ..+.+- . ..++...+..+..+.|+.+.+++++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEP 88 (1495)
T ss_pred hcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence 785322 245543 356999995444444433332 211111 1 012222222236666666655555433333
Q ss_pred HHHHHHH---HHHhcc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhHHh
Q 000503 74 SVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLVTF 145 (1459)
Q Consensus 74 ~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt~~ 145 (1459)
....... ..+... .....+.. +++.++..++++++..+.+.||.|+.+++..+.+||++. +++.++. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 164 (1495)
T PLN03232 89 VLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVL----P 164 (1495)
T ss_pred HHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHH----H
Confidence 3221110 111111 11122333 666788888888777899999999999999999999999 7777762 1
Q ss_pred hhhhhhh---hhhHHHHHHHHHHHHHHH-HHHHhhcccCcccccccccccC-C-CCCCCCCCCCCCCCCChhHHHHHHhH
Q 000503 146 SSFEVLK---CLKEICLVLLDIMFGISI-NIIRVKRASSRRSSIEESLLSV-D-GDVEEDCNTDSGNNQSYWDLMAFKSI 219 (1459)
Q Consensus 146 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~e~~~~~~s~~~f~Wl 219 (1459)
..+.... .. ....++..+.+.+.. +..+..++.+.-.....+...+ . ...+...+++||+++|+|||++|||+
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~ 243 (1495)
T PLN03232 165 LKNSINRTALYL-CISSRCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWM 243 (1495)
T ss_pred HHHHHhccccce-ehhHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHHH
Confidence 1111111 11 122222233322222 2222222111000000000000 0 00011245789999999999999999
Q ss_pred HHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000503 220 DSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 299 (1459)
Q Consensus 220 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P 299 (1459)
+|++++||+++|+.+|||+|+++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++.+++.+++|
T Consensus 244 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P 321 (1495)
T PLN03232 244 TPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES-R-RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGP 321 (1495)
T ss_pred HHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765 2 356899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHH
Q 000503 300 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQ 379 (1459)
Q Consensus 300 ~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~ 379 (1459)
++++++++++++++..+.++.+++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++|+++
T Consensus 322 ~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~ 401 (1495)
T PLN03232 322 VILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVT 401 (1495)
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHH
Confidence 99999999997644445678888888888888899988999999999999999999999999999999888888999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 380 TFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRR 459 (1459)
Q Consensus 380 nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~ 459 (1459)
|+|++|++++.+....+|.+|..|++++++++++|..+|++++++++++++++|++.++++++++.++++++.+|+|.+.
T Consensus 402 n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~ 481 (1495)
T PLN03232 402 NMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGI 481 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHH
Q 000503 460 TGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 539 (1459)
Q Consensus 460 ~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l 539 (1459)
++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.++++|++.+|+++
T Consensus 482 ~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l 561 (1495)
T PLN03232 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSL 561 (1495)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988888877777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCC
Q 000503 540 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNN 619 (1459)
Q Consensus 540 ~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~ 619 (1459)
++++.+..|+..+|..+..+.++++|++||++|++.++..+... .+. ......++++|++|+|+.++
T Consensus 562 ~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~~---------~~~~~~I~~~~vsF~y~~~~ 628 (1495)
T PLN03232 562 SLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PPL---------QPGAPAISIKNGYFSWDSKT 628 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CCc---------CCCCCcEEEEeeEEEcCCCC
Confidence 99999999999999999999999999999999997665321100 000 01234699999999998532
Q ss_pred ccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeE-EEEcCcEEEEcCCCCCCCCCHHHHhccCCCC
Q 000503 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGKNY 698 (1459)
Q Consensus 620 ~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~-i~~~~~i~y~~Q~~~l~~~ti~~nI~~g~~~ 698 (1459)
+ +++|+|+||++++|++++|+||+|||||||+++|+|+++|++|. +.++++||||+|+|||||+||||||+||+++
T Consensus 629 ~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~ 705 (1495)
T PLN03232 629 S---KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDF 705 (1495)
T ss_pred C---CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCcc
Confidence 2 34599999999999999999999999999999999999999975 5678999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhc
Q 000503 699 DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778 (1459)
Q Consensus 699 ~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~ 778 (1459)
|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|+++++.
T Consensus 706 ~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 706 ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhhhh-cccccc-h-hhh
Q 000503 779 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEM-RTNASS-A-NKQ 855 (1459)
Q Consensus 779 ~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~ 855 (1459)
+ .++++|+|+|||+++.++.||+|++|++|+|+++|+++|+.+..+.+..+..+........+... ..+... . ...
T Consensus 786 ~-~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1495)
T PLN03232 786 D-ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864 (1495)
T ss_pred h-hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccccc
Confidence 6 56789999999999999999999999999999999999998765544333221110000000000 000000 0 000
Q ss_pred hhhhcc---cccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC
Q 000503 856 ILLQEK---DVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 931 (1459)
Q Consensus 856 ~~~~~~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 931 (1459)
....+. +..+..+......++|+++.|.+++++|++|+++.| ++..++++++.++.++...++++|+++|++....
T Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 944 (1495)
T PLN03232 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP 944 (1495)
T ss_pred ccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 000000 000000011124466778899999999999999865 3444455556667778888899999999875321
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhc
Q 000503 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDD 1011 (1459)
Q Consensus 932 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~ 1011 (1459)
......+|+++|++++++..++.+++.+++...+.+++.++|++++++++++|++||+++|+|+++|||++|++.+|+
T Consensus 945 --~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~ 1022 (1495)
T PLN03232 945 --KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDR 1022 (1495)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHH
Confidence 122346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHH
Q 000503 1012 SLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTI 1091 (1459)
Q Consensus 1012 ~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tI 1091 (1459)
.++..+..++..++.+++.++++++..++++++++|+.++++.++.+|.+++|++++.+..+++|+++++.|+++|+.||
T Consensus 1023 ~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tI 1102 (1495)
T PLN03232 1023 NVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHH
Confidence 99999999988888888888877777788777888888888888899999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHH
Q 000503 1092 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAP 1171 (1459)
Q Consensus 1092 raf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~ 1171 (1459)
|+|+++++|.+++.+..+.+++..+.....++|+..+++.++++++.+.+.+.+.. .+........++.+|++++|+..
T Consensus 1103 raf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~ 1181 (1495)
T PLN03232 1103 RAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLN 1181 (1495)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999887765554444333332 11111111235678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeC
Q 000503 1172 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEG 1249 (1459)
Q Consensus 1172 ~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~ 1249 (1459)
+..+++++++.+.++|+.++|+||+.++.+.|+|+.. ....++++||.+|.|+|+||+|+|+++.++||+|+||+|+|
T Consensus 1182 ~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcC
Confidence 9999999999999999999999999999998887532 22234567999999999999999987777899999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHH
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1329 (1459)
Q Consensus 1250 GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei 1329 (1459)
|||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||++|+|||||||||+++++|+|+
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei 1341 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADL 1341 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCc
Q 000503 1330 WSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407 (1459)
Q Consensus 1330 ~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~ 1407 (1459)
|+|+++++++++++++ ||||.++|+|.||||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++|
T Consensus 1342 ~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~ 1421 (1495)
T PLN03232 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421 (1495)
T ss_pred HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhCC
Q 000503 1408 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459 (1459)
Q Consensus 1408 TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g~ 1459 (1459)
|+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|.
T Consensus 1422 TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999888899999998873
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-194 Score=1970.02 Aligned_cols=1230 Identities=27% Similarity=0.459 Sum_probs=1074.1
Q ss_pred CCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHHH
Q 000503 202 TDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPY 281 (1459)
Q Consensus 202 ~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (1459)
.+||+++|+|||++|||+||++++||+++|+.+|||+|+++++++.+.++|++.|+++..++.++++|+++++++|+|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999998765233456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 282 ICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS--GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1459)
Q Consensus 282 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy 359 (1459)
+..++++++.+++.+++|+++++++++++... ..+.+|++++++++++++.+++.+++.|...++++++|++|...||
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996422 2356889999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000503 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439 (1459)
Q Consensus 360 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~ 439 (1459)
+|+|+++....++.++|+++|+|++|++++..+...+|.+|..|+++++++++||+++|+++++|++++++++|++.+++
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 519 (1459)
Q Consensus 440 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1459)
+++.++++++++.+|+|++.++|+|+|||+||+||||+.|.+++++.|++|++..++..++..+..+++...|.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888999999999
Q ss_pred HHHHHHhCCCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcc
Q 000503 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLN-SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 598 (1459)
Q Consensus 520 f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 598 (1459)
|++|.+.++ ++++.+||+++++++++.|+. .+|..+..+.++.+|++||++||..+|.++...
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--------------- 386 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--------------- 386 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---------------
Confidence 999988755 789999999999999999985 799999999999999999999998766432100
Q ss_pred cCCCCceEEEEcceEeccCCC----------------c-c-----------ccccceeeceeEecCCcEEEEEcCCCCcH
Q 000503 599 FNSKDMAVIMQDATCSWYCNN----------------E-E-----------EQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1459)
Q Consensus 599 ~~~~~~~i~~~~~sf~w~~~~----------------~-~-----------~~~~~l~~i~l~i~~g~~~~ivG~~GsGK 650 (1459)
......++++|++|.|+... . . ..+++|+|+||+|++|++++|+|||||||
T Consensus 387 -~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGK 465 (1490)
T TIGR01271 387 -NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465 (1490)
T ss_pred -cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCH
Confidence 01123588999999996310 0 0 01357999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCeEEEEcCcEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCC
Q 000503 651 SSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1459)
Q Consensus 651 Stll~~l~g~~~~~~G~i~~~~~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 730 (1459)
||||++|+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|.+|++
T Consensus 466 STLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~ 545 (1490)
T TIGR01271 466 SSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 (1490)
T ss_pred HHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
|.+|||||||||+||||+|++|+||||||||||||+++++++++.|+.+ +.+++|+|+|||+++.++.||+|++|++|+
T Consensus 546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~-~~~~~tvilvtH~~~~~~~ad~ii~l~~g~ 624 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK-LMSNKTRILVTSKLEHLKKADKILLLHEGV 624 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCeEEEEeCChHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999987655 567899999999999999999999999999
Q ss_pred EEEecCHHHHHhccccCccccc--------------------------c--c-----c-hh------hhhhhhhh-----
Q 000503 811 VKWIGSSADLAVSLYSGFWSTN--------------------------E--F-----D-TS------LHMQKQEM----- 845 (1459)
Q Consensus 811 i~~~g~~~~l~~~~~~~~~~~~--------------------------~--~-----~-~~------~~~~~~~~----- 845 (1459)
+++.|+++++......+..... + . + .. ......+.
T Consensus 625 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1490)
T TIGR01271 625 CYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSI 704 (1490)
T ss_pred EEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998754211100000 0 0 0 00 00000000
Q ss_pred --------------------------c--ccccch------hh----h-h----h--------------------hh---
Q 000503 846 --------------------------R--TNASSA------NK----Q-I----L--------------------LQ--- 859 (1459)
Q Consensus 846 --------------------------~--~~~~~~------~~----~-~----~--------------------~~--- 859 (1459)
. .....+ .. + . . ..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1490)
T TIGR01271 705 ILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNR 784 (1490)
T ss_pred cccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccc
Confidence 0 000000 00 0 0 0 00
Q ss_pred -----cc--cc--------------c-------C-CC-------c----c--hhhhhHHHHHhcccchHHHHHHHHhhhh
Q 000503 860 -----EK--DV--------------V-------S-VS-------D----D--AQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1459)
Q Consensus 860 -----~~--~~--------------~-------~-~~-------~----~--~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1459)
+. +. . . .. + + .....++|+++.|.++|++|++|+++.|
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g 864 (1490)
T TIGR01271 785 GENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNR 864 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcC
Confidence 00 00 0 0 00 0 0 0112445677889999999999999876
Q ss_pred H-HHHHHHHHHHHHHHHHHhhhhhhhhhhccccC-----C-CCC-----------CcchhHH-HHHHHHHHHHHHHHHHH
Q 000503 898 W-FITLVICLSAILMQASRNGNDLWLSYWVDTTG-----S-SQT-----------KYSTSFY-LVVLCIFCMFNSFLTLV 958 (1459)
Q Consensus 898 ~-~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~-~~~-----------~~~~~~~-l~~~~~l~~~~~~~~~~ 958 (1459)
+ ..+++++++.++.+++..++++|+.+|..... . ... .....+| +.+|+++.++..++.++
T Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1490)
T TIGR01271 865 NLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFF 944 (1490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5 44444456667778899999999998875210 0 000 0011233 44555555556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHH
Q 000503 959 RAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ 1038 (1459)
Q Consensus 959 ~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1038 (1459)
+.+++...+.+++.++|++++++++++|++||+++|+|+++|||++|++.+|+.+|..+..++..++.+++.++++++..
T Consensus 945 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 945 RGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1039 VFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSE 1118 (1459)
Q Consensus 1039 ~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 1118 (1459)
|+++++++|++++++.++++|.+++|++++++..+++|+++|+.|+++|+.|||+||++++|.+++.+..+.+++..+..
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99988899998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000503 1119 LTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLE 1198 (1459)
Q Consensus 1119 ~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~ 1198 (1459)
.+.++|+..++++++.+++..++++++.. ....+|.+|++++|++.+...++++++.+.++|..+.|++|+.+
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-------~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1177 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTFIAIGT-------NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFK 1177 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987765444433333311 11346778999999999999999999999999999999999999
Q ss_pred hhcCCcccccc----------------CCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCc
Q 000503 1199 YMDVPQEELCG----------------YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1262 (1459)
Q Consensus 1199 ~~~~~~e~~~~----------------~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSG 1262 (1459)
|.+.|+|+... ...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+||||||||||||||
T Consensus 1178 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsG 1257 (1490)
T TIGR01271 1178 FIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSG 1257 (1490)
T ss_pred HhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCC
Confidence 99887764211 01234579999999999999999987788999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHH
Q 000503 1263 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342 (1459)
Q Consensus 1263 KSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i 1342 (1459)
||||+++|+|+++ ++|+|.|||+||++++++++|++|++|||||++|+||||+||||++.++|+++|+||+++++++++
T Consensus 1258 KSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i 1336 (1490)
T TIGR01271 1258 KSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVI 1336 (1490)
T ss_pred HHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHH
Confidence 9999999999998 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHh
Q 000503 1343 EAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1420 (1459)
Q Consensus 1343 ~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~ 1420 (1459)
+++ ||||.|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.|+++|++.+++||||+||||++++.
T Consensus 1337 ~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416 (1490)
T ss_pred HhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1421 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1421 ~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
+||||+||++|+|+|+|+|++|++ ++|.|++|+++++
T Consensus 1417 ~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1417 ECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAAD 1453 (1490)
T ss_pred hCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhC
Confidence 999999999999999999999997 4789999999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-184 Score=1870.94 Aligned_cols=1250 Identities=32% Similarity=0.526 Sum_probs=1066.8
Q ss_pred CCCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhh-------------------
Q 000503 201 NTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRS------------------- 261 (1459)
Q Consensus 201 ~~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~------------------- 261 (1459)
.+.||+++||+.|+++.|++|++.+..|..|+.+|||+-..+.++-++..++.+..++...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 4579999999999999999999999999999999999988888876555555443222100
Q ss_pred --------------------------------c-----------------------------------------------
Q 000503 262 --------------------------------C----------------------------------------------- 262 (1459)
Q Consensus 262 --------------------------------~----------------------------------------------- 262 (1459)
+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred ----------CCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHH
Q 000503 263 ----------NCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSIL 331 (1459)
Q Consensus 263 ----------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~ 331 (1459)
..+..+|+++++++|++.++..++++++.+++.+++|++++.++++++++. ....|+++++++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 012347999999999999999999999999999999999999999997633 334578888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 332 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERS--EFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVA 409 (1459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~--~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~ 409 (1459)
++++.++|.|...+.+.++|++|...||+|+++++..+.. +.++|+++|+|++|++++..+..++|.+|.+|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887654 56889999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHH
Q 000503 410 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSS 489 (1459)
Q Consensus 410 ~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~ 489 (1459)
+++||+.+|+++++|++++++++|++.++++++.+.++++++++|+|++.++|+++|||+||+||||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 490 EVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRL 569 (1459)
Q Consensus 490 El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI 569 (1459)
|++.+++..+...+..++++.+|.++.+++|++|.+.+++||++.+||++++|++++.|+.++|..++.+.++++|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCchh----hhh-----hcCCCCcc-----cCC---------------------------------CcccCCC
Q 000503 570 TRFLGCSEYKHE----LEQ-----AANSPSYI-----SNG---------------------------------LSNFNSK 602 (1459)
Q Consensus 570 ~~fL~~~e~~~~----~~~-----~~~~~~~~-----~~~---------------------------------~~~~~~~ 602 (1459)
++||+.+|.... ... ....+... .+. .......
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 999987663110 000 00000000 000 0000011
Q ss_pred CceEEEEcceEeccCCCc----------------------------------cccccceeeceeEecCCcEEEEEcCCCC
Q 000503 603 DMAVIMQDATCSWYCNNE----------------------------------EEQNVVLNQVSLCLPKGSLVAVIGEVGS 648 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~----------------------------------~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 648 (1459)
...+.++|++|+|+.... ...+++|+|+||++++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 234667777777652100 0123579999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCeEEEEcCcEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCccccc
Q 000503 649 GKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1459)
Q Consensus 649 GKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig 728 (1459)
|||||+++|+|+++|++|+|.++++||||+|+||++++||+|||.|+.++++++|++++++|+|++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeC
Q 000503 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~ 808 (1459)
++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+ ..+++|+|++||+++.++.||+|++|++
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987665 4468999999999999999999999999
Q ss_pred CeEEEecCHHHHHhccccCccccccc---ch--hhhhhhh--hhccccc---c-h---hhhhhh-hcccccCCCcchhhh
Q 000503 809 GQVKWIGSSADLAVSLYSGFWSTNEF---DT--SLHMQKQ--EMRTNAS---S-A---NKQILL-QEKDVVSVSDDAQEI 873 (1459)
Q Consensus 809 G~i~~~g~~~~l~~~~~~~~~~~~~~---~~--~~~~~~~--~~~~~~~---~-~---~~~~~~-~~~~~~~~~~~~~~~ 873 (1459)
|++.++|+++++..... +..+.... .. ......+ ....... . . ..+... ...+...........
T Consensus 857 G~i~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTSL-YATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhChH-HHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 99999999999875421 11111000 00 0000000 0000000 0 0 000000 000000000112234
Q ss_pred hHHHHHhcccchHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHH
Q 000503 874 IEVEQRKEGRVELTVYKNYAKFSGWFI-TLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFN 952 (1459)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~ 952 (1459)
.++|+++.|.++|++|++|++..|... .+.++++.++.+++..++++|+++|++... ......|+++|+++.++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF----KLSAATYLYVYLGIVLLG 1011 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcccHHHHHHHHHHHH
Confidence 566777889999999999999876443 333444455667788889999999987431 122346788888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhh
Q 000503 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032 (1459)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1032 (1459)
.++.+++.+.....+.++++++|+.++++++++|++|||++++|+++|||++|++.+|+.++..+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888899999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHH
Q 000503 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1112 (1459)
Q Consensus 1033 ~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~ 1112 (1459)
++++..|+++++++|+.++++.++++|.+..|++++.+..+++|+++++.|+++|+.|||+|++++++.+++.+..|.+.
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888898888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1113 RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVS 1192 (1459)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s 1192 (1459)
+..+.....++|+..+++++..+++.+++++.+..... ..+..++|.++++++|+..+...+.++++.+.++|+.+.|
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s 1249 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTML--RATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNS 1249 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988776554443333322110 1122468899999999999999999999999999999999
Q ss_pred HHHHHhhhcC-Ccccccc-------------------------CCCCC---CCCCCCccEEEEEEEEEecCCCCccceee
Q 000503 1193 LERVLEYMDV-PQEELCG-------------------------YQSLS---PDWPFQGLIEFQNVTMRYKPSLPAALHDI 1243 (1459)
Q Consensus 1193 ~~Ri~~~~~~-~~e~~~~-------------------------~~~~~---~~wp~~g~I~f~nVs~~Y~~~~~~vL~~i 1243 (1459)
++|+.+|.+. |+|+... ...++ +.||..|.|+|+||+|+|+++.++||+||
T Consensus 1250 ~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~v 1329 (1560)
T PTZ00243 1250 VERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGV 1329 (1560)
T ss_pred HHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecc
Confidence 9999999964 3332100 01111 23556799999999999988777899999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC
Q 000503 1244 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1323 (1459)
Q Consensus 1244 sl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~ 1323 (1459)
||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~ 1409 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccC-CCEEEEeccCcCCCHHHHHHHHHHH
Q 000503 1324 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS-SKVLCLDECTANVDAQTASILQNAI 1400 (1459)
Q Consensus 1324 ~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~-~~ILlLDEaTS~lD~~te~~I~~~I 1400 (1459)
++|+|+|+|+++|+++++++++ ||||.++|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999996 8999999999999999999999999
Q ss_pred HHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1401 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1401 ~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
++.+++||||+||||++++.+||||+||++|+|+|+|+|+||+++++|.|++|++++|
T Consensus 1490 ~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1490 MSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999987889999999876
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-144 Score=1363.17 Aligned_cols=1156 Identities=21% Similarity=0.264 Sum_probs=845.6
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCC-c-----hHHHHHHHHHHHHHHHHHHHH-H
Q 000503 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLL---NKLIKFLQQGSG-H-----LDGYVLAIALGLTSILKSFFD-T 337 (1459)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll---~~li~~~~~~~~-~-----~~g~~l~~~l~~~~~~~~~~~-~ 337 (1459)
++++-...+-++++++..+..+...+.+..+|++. .++.+.+....+ . ..-.++.+.+.+..++.+++. .
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556677777777777788888888765 344444433111 1 111111122222222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 000503 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-----SFHDAWSLPFQIGVALYL 412 (1459)
Q Consensus 338 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-----~~~~~~~~p~~i~i~~~l 412 (1459)
.+.+...|...++|.... +..||...+.++...+|++.+-|+.|+++|++++. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl----~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYL----KAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555 45566677778777889999999999999998543 333333333333343333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHH
Q 000503 413 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVK 492 (1459)
Q Consensus 413 L~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~ 492 (1459)
.|++ +++.+.+..++.......++.+.+...+.+++..+.-+...|++.+||+|-.|+.|+...++..+.-+.-.+
T Consensus 170 -~W~L---tlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 -GWKL---TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 3333 333444444445556677888888888888888899999999999999999999999888887665433333
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 493 HLSTRKYLDAWCVFFW--ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 570 (1459)
Q Consensus 493 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~ 570 (1459)
...+......+...+. .+.......+|||..++..+..+++.+|+.+...-.-...|.+....++.+..|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 3333333333322221 12223445678887778888899999999886666666788888899999999999999999
Q ss_pred HhhCCCCCchhhhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcH
Q 000503 571 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1459)
Q Consensus 571 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGK 650 (1459)
+-++.....+.... . + .......+.|+++|+.|+||++++ .++|+|+||+||+|+.+++||||||||
T Consensus 326 ~~i~~~~~i~~~~~-~--------~-~~~~~~~g~ief~nV~FsYPsRpd---v~Il~g~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSK-G--------G-RVLSSIKGEIEFRNVCFSYPSRPD---VKILKGVSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred HHhcCCCCCCcccc-c--------C-CcccccccceEEEEEEecCCCCCc---chhhCCeEEEeCCCCEEEEECCCCCCH
Confidence 98865432221110 0 0 011235678999999999998754 345999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhH
Q 000503 651 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDI 716 (1459)
Q Consensus 651 Stll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di 716 (1459)
||++++|.|.|+|++|+|.++| +||.|.|+|.||++||+|||.||+| -+.++..++++....++.+
T Consensus 393 ST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi 472 (1228)
T KOG0055|consen 393 STLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFI 472 (1228)
T ss_pred HHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHH
Confidence 9999999999999999999987 5999999999999999999999985 4678888999999999999
Q ss_pred hhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcch
Q 000503 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796 (1459)
Q Consensus 717 ~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~ 796 (1459)
..+|+|++|.+||+|..|||||||||||||||.++|+||||||||||||+++++.+ +.++.. ..+|+|.|+|+||++.
T Consensus 473 ~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~-~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 473 LKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDK-ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHH-hhcCCeEEEEeeehhh
Confidence 99999999999999999999999999999999999999999999999999977655 444544 7789999999999999
Q ss_pred hhcCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhh-hh----hcccccch--hhhhhhhcccc--cCCC
Q 000503 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQK-QE----MRTNASSA--NKQILLQEKDV--VSVS 867 (1459)
Q Consensus 797 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~--~~~~~~~~~~~--~~~~ 867 (1459)
+++||+|++|++|+|+|.|+|+||++..+.+.++.+..+.....+. ++ .+...... ........+.. ....
T Consensus 551 IrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~ 630 (1228)
T KOG0055|consen 551 IRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLL 630 (1228)
T ss_pred hhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccc
Confidence 9999999999999999999999999888777665322111110000 00 00000000 00000000000 0000
Q ss_pred --cchhhhhHHHHHhcccchHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCC---CCCcchhH
Q 000503 868 --DDAQEIIEVEQRKEGRVELTVYKNYAKF--SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSS---QTKYSTSF 940 (1459)
Q Consensus 868 --~~~~~~~~~e~~~~g~v~~~~y~~y~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~---~~~~~~~~ 940 (1459)
...++..++...+.. ....++.-++. ..|..+++..++.++..+....-.+.+++..+..... ........
T Consensus 631 ~~~~~~e~~~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~ 708 (1228)
T KOG0055|consen 631 SVKPEGEDPEEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA 708 (1228)
T ss_pred ccccccccccccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 000000000000001 11112233331 2455555555555554443333333333222211100 11122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cChhhHHHHHhhhhhhhhchhhHHHH
Q 000503 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILN 1018 (1459)
Q Consensus 941 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~--~~~G~ilnrfs~D~~~id~~l~~~l~ 1018 (1459)
|..+|++++++..++.++..+++...+.+...++|.++|++++++++.|||. +. |.+.+|+++|...+...+...+.
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999996 56 99999999999999988888888
Q ss_pred HHHHHHHhHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhchhHhHHHhhhccHHHHHhc
Q 000503 1019 ILLANFVGLLGIAVVLSYVQVFF---LLLLVPFWFIYSKLQFFYRS-TSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094 (1459)
Q Consensus 1019 ~~~~~~~~~l~~~~~~~~~~~~~---~~~~~pl~~~~~~~~~~y~~-~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf 1094 (1459)
.++.++..++..+++.++..|-+ .+++.|++++..+.+..+.. .+++.+.... .......|++.+++||++|
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~----ea~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYE----EASKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHhHHHHHHH
Confidence 88888888777777766666654 45567777776666665543 3333332222 2234678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 000503 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1174 (1459)
Q Consensus 1095 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1174 (1459)
+.|++|.+.|.+.++...+...... .|.++...+-..++.+.-++...++.. ....+..++..+...+..+..-..
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~-Li~~g~~~~~~~~~vf~~l~~ta~ 939 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGAR-LISNGEMTFEDVFRVFMALSFTAM 939 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHhcCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999998888777665443 333333333222222222221111111 011234455555544444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEE
Q 000503 1175 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQV 1253 (1459)
Q Consensus 1175 ~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~Gekv 1253 (1459)
.+.......++.-++..|+.+++++++.+++-...........+.+|+|+|+||+|+||.. ..+||+|+||+|++||.+
T Consensus 940 ~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTv 1019 (1228)
T KOG0055|consen 940 ALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTV 1019 (1228)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEE
Confidence 5667778888999999999999999988774322111111112468999999999999743 236999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC-CCChHHHHHH
Q 000503 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSV 1332 (1459)
Q Consensus 1254 gIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~a 1332 (1459)
|+||||||||||++.+|.|+|+|++|.|.|||.||+++++++||++|++|+|||.||++||||||.++. ..+.+||.+|
T Consensus 1020 ALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1020 ALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA 1099 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999983 4589999999
Q ss_pred HHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEE
Q 000503 1333 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410 (1459)
Q Consensus 1333 L~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI 1410 (1459)
++.++.+++|.++ ||||.|||+|.+||||||||||||||++|||||||||||||+||.++|+.+|++|++...++|.|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1411 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1411 ~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
+|||||+||++||.|+|+++|+|+|+|+|++|++ ++|.|++|++.+.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999999999999999999999 5689999998653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-133 Score=1360.13 Aligned_cols=1163 Identities=17% Similarity=0.210 Sum_probs=847.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1459)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (1459)
+++-.-+.+++.++.+.++.++..++....|+++.++++.+..+.. ...+++.++++.++..++...+.+...+++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN---VNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556667777788888888888899999999987642211 1223344445556666677777888889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Q 000503 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYL-LYTQVKFAFVSGLA 426 (1459)
Q Consensus 349 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~l-L~~~lg~a~l~~~~ 426 (1459)
++...+...+|+|.++++...++..+.|++.+.++.|++.+...+ ..+..+...++.++.++++ ++..+.++. +.++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lal-v~l~ 205 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTL-CITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 999999999999999999988888888999999999999988754 3455555555554444333 232222232 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1459)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1459)
++.+++.+..++.+++.+..++..+..++..+.+.|.++||++||.|+.|+.+.+++.+..+...+...+.....++...
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667788888888888888899999999999999999999999999999887655555544454444444322
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000503 507 FWATT--PTLFSLFTFGLFALMGH--------QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576 (1459)
Q Consensus 507 ~~~~~--~~~~~~~~f~~~~~~~~--------~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 576 (1459)
+.... ...+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.+.++.+
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~ 365 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRK 365 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222 22345567888877653 588898888765554445556666677889999999999999999764
Q ss_pred CCchhhhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHH
Q 000503 577 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656 (1459)
Q Consensus 577 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~ 656 (1459)
+..+.. . .... .+ ....++++|++|+|+.+++ .++|+|+||+|++|++++|+||||||||||+++
T Consensus 366 ~~~~~~-~-~~~~---------~~-~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 366 PLVENN-D-DGKK---------LK-DIKKIQFKNVRFHYDTRKD---VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred CCCCCC-C-CCcc---------CC-CCCcEEEEEEEEEcCCCCC---CceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 322110 0 0000 01 1136999999999975422 346999999999999999999999999999999
Q ss_pred HhcCccCCCeEEEEc-C-------------cEEEEcCCCCCCCCCHHHHhccCCC-------------------------
Q 000503 657 ILGEMMLTHGSIHAS-G-------------SIAYVPQVPWILSGTIRDNILFGKN------------------------- 697 (1459)
Q Consensus 657 l~g~~~~~~G~i~~~-~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~------------------------- 697 (1459)
|+|.++|++|+|.++ | .||||+|+|.+|++||+|||.+|..
T Consensus 431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1466)
T PTZ00265 431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK 510 (1466)
T ss_pred HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence 999999999999994 3 4899999999999999999998741
Q ss_pred ---------------------------------CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHH
Q 000503 698 ---------------------------------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1459)
Q Consensus 698 ---------------------------------~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRval 744 (1459)
.++++..++++.+++++.+..+|+|++|.+|++|.+|||||||||+|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI 590 (1466)
T PTZ00265 511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590 (1466)
T ss_pred cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence 23456778888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhcCCEEEEEeCC--------------
Q 000503 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKG-------------- 809 (1459)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~~d~i~~l~~G-------------- 809 (1459)
|||++++|+|||||||||+||+++++.+.+. +.... .+++|+|+|||+++.+..||+|++|++|
T Consensus 591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~-L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 591 ARAIIRNPKILILDEATSSLDNKSEYLVQKT-INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999988776 43311 2478999999999999999999999886
Q ss_pred ---------------------------------eEEEecCHHHHHh-ccccCcccccccchhhhhh-----hhhh--ccc
Q 000503 810 ---------------------------------QVKWIGSSADLAV-SLYSGFWSTNEFDTSLHMQ-----KQEM--RTN 848 (1459)
Q Consensus 810 ---------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~-----~~~~--~~~ 848 (1459)
+|+|+|+|+|+++ ..+.+..+.+......... .... ...
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 5999999999987 4555554432111000000 0000 000
Q ss_pred c-c-ch-h---hhhhh---hccc------ccCCCcch-hhhhHH------HHH--hcccc--hHHHHHHHHhhhhHHHHH
Q 000503 849 A-S-SA-N---KQILL---QEKD------VVSVSDDA-QEIIEV------EQR--KEGRV--ELTVYKNYAKFSGWFITL 902 (1459)
Q Consensus 849 ~-~-~~-~---~~~~~---~~~~------~~~~~~~~-~~~~~~------e~~--~~g~v--~~~~y~~y~~~~g~~~~~ 902 (1459)
. . .. . .+... .+.. .....++. .+...+ ++. ..... .+..+..+++...+. ++
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 828 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD-VT 828 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH-HH
Confidence 0 0 00 0 00000 0000 00000000 000000 000 00001 111222333222222 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 903 VICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 981 (1459)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 981 (1459)
+.++++++..++....++.++.+.+.... .........|..++++++++..++.+++.++..+.+.+...++|..++++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ 908 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN 908 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444444555555556655542110 00111234567777778888888889999999999999999999999999
Q ss_pred HhcCccccccc--cChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 982 IVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059 (1459)
Q Consensus 982 vl~~p~~ff~~--~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y 1059 (1459)
+++.|++||++ +++|++++|+++|++.+...+...+..++..++.+++.++++.+..|.++++++|+.++........
T Consensus 909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 988 (1466)
T PTZ00265 909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR 988 (1466)
T ss_pred HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 8899999999999999999888888888888888887777777788877766655444332221111
Q ss_pred HH--HHHHHHHH-------------HHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1060 RS--TSRELRRL-------------DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1124 (1459)
Q Consensus 1060 ~~--~sr~l~~l-------------~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w 1124 (1459)
.+ ..++.++. +.+..+.....+.|+++|++|||+|+.|+++.+++.+..+...+..........+
T Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1466)
T PTZ00265 989 ARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068 (1466)
T ss_pred HHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111 1222345677899999999999999999999999999988887766655444333
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000503 1125 LSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1203 (1459)
Q Consensus 1125 l~~~l~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~ 1203 (1459)
+....+.+..+...++..+ ..+.. .+..+.|.+..++.+.+.....+..+...+.+++.+..+.+|+.++++.+
T Consensus 1069 ~~~~~~~~~~~~~~~~~~~G~~lv~-----~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~ 1143 (1466)
T PTZ00265 1069 LWGFSQSAQLFINSFAYWFGSFLIR-----RGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRK 1143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3333333322221111111 11111 23445666555554444444456777888999999999999999999876
Q ss_pred cccccc-CCCCC--CCCCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC---
Q 000503 1204 QEELCG-YQSLS--PDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--- 1276 (1459)
Q Consensus 1204 ~e~~~~-~~~~~--~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--- 1276 (1459)
++.... ..... +..+..|.|+|+||+|+|++. ..+||+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1144 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~ 1223 (1466)
T PTZ00265 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223 (1466)
T ss_pred CcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccc
Confidence 542111 11111 112346889999999999743 24799999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------CCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1277 ---------------------------------------------------CGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1277 ---------------------------------------------------~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
++|+|+|||+||++++++++|++|+||||
T Consensus 1224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1303 (1466)
T PTZ00265 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ 1303 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC
Confidence 69999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1306 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
||+||+|||||||.++. ..+|+|+++|++.++++++|.++ ||||.|||+|.+|||||||||||||||+|+|+|||||
T Consensus 1304 ep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1304 EPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999885 47999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeC----CeE-EEecChhHHhccCCcHHHHHHH
Q 000503 1383 ECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDH----GHL-VEQGNPQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~----G~I-vE~G~p~eLl~~~~~~f~~l~~ 1455 (1459)
||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++|++
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 9999999999999999999873 69999999999999999999999999 995 4999999999865689999998
Q ss_pred hh
Q 000503 1456 AS 1457 (1459)
Q Consensus 1456 ~~ 1457 (1459)
.+
T Consensus 1464 ~~ 1465 (1466)
T PTZ00265 1464 LA 1465 (1466)
T ss_pred hc
Confidence 65
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-88 Score=812.55 Aligned_cols=561 Identities=26% Similarity=0.365 Sum_probs=456.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 964 (1459)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 964 (1459)
+...+.|.+.-.+++...+ ++.++......+.|.++...++.... ............+..++.++.+++..++.+++.
T Consensus 135 ~~rl~~l~~~~~~~l~~a~-~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~ 213 (716)
T KOG0058|consen 135 LKRLLGLLKPEWKWLVAAF-VLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQ 213 (716)
T ss_pred HHHHHHHhchhHHHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554444443333 33333344455555555444443211 111222333455667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHH
Q 000503 965 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044 (1459)
Q Consensus 965 ~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1044 (1459)
+.+.+...++|..+|++++++.+.|||.+.+|++++|++.|...+.+.++..+...+.+.+..++.+..+++.+|-+.++
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv 293 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLV 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876443
Q ss_pred ---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1045 ---LVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1459)
Q Consensus 1045 ---~~pl-~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1459)
.+|+ .++...+.++|++.+++.+ ++-+.......|.+++++|||+|+.|++..++|.+.+++..+...+...
T Consensus 294 ~~i~~P~v~~~~~~yG~~~rklS~~~Q----~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 294 TLIVVPIVALVAKIYGKYLRKLSKQTQ----DALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3344445556666666655 3444556778899999999999999999999998888876665544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000503 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200 (1459)
Q Consensus 1121 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~ 1200 (1459)
....+....++........+ ..++.+ ....+.+++|.+...+.|...+...+.++...|.++.+..+|.+|++|++
T Consensus 370 a~~~f~~~~~~~~~~~~~si---L~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSI---LFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHH---HHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 22222222222222211111 111111 12246778999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCc
Q 000503 1201 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1459)
Q Consensus 1201 ~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1279 (1459)
|.+|.-+.. ....|. ..+|.|+|+||+|+|+.. ..+||||+||+|+|||.||+||||||||||++++|.|+|+|++|
T Consensus 446 dr~P~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 446 DRKPRIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccCCCCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 987754222 111222 568999999999999754 34699999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCC
Q 000503 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1356 (1459)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~ 1356 (1459)
+|++||+||++++.+.||++|++|.|||+||+|||||||.++.+ .+||||.+|.++++.++||.++ |+||.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 99999999999999999999999999999999999999988754 5899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEe
Q 000503 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436 (1459)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~ 1436 (1459)
.|||||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+|||||+||+.+|+|+|+++|+|+|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHHhh
Q 000503 1437 GNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1437 G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
|+|+||+++++|.|++|++++
T Consensus 684 G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 684 GTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred ccHHHHhhCcccHHHHHHHHh
Confidence 999999999999999999875
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-80 Score=775.89 Aligned_cols=546 Identities=27% Similarity=0.392 Sum_probs=458.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000503 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1459)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1459)
++..++.+....+.+++.+..+|..-.............++++.+++..++.+++.+++...+.|....+-.++++++++
T Consensus 160 ~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~ 239 (709)
T COG2274 160 LLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLR 239 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 34555666677777777777776542222222333334556677788889999999999999999999999999999999
Q ss_pred CccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1459)
Q Consensus 985 ~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr 1064 (1459)
.|++||++.++|++++|+ +|++.|.+.+.......+..+...+..++++.+.+|.++++.+....++..+.....+..|
T Consensus 240 Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~ 318 (709)
T COG2274 240 LPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318 (709)
T ss_pred CcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5688888888777777777776667777777777776655444333333332222222223
Q ss_pred HHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1144 (1459)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1144 (1459)
+..+...+..+...++..|++.|++|||+.+.|.++..++++..++..+..+.......|.+....++..+....+..+.
T Consensus 319 ~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G 398 (709)
T COG2274 319 RKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFG 398 (709)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455667899999999999999999999999999999999999998888888877766666554333222222
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEE
Q 000503 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1224 (1459)
Q Consensus 1145 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1224 (1459)
+... ..+..+.|.+.........+.+++..++..|++++....+.+|+.+.++.|+|+..+.. +...|+.+|.|+
T Consensus 399 ~~lV----l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I~ 473 (709)
T COG2274 399 AILV----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQGEIE 473 (709)
T ss_pred HHHH----hcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccCceEE
Confidence 1110 13456788888888889999999999999999999999999999999999998643322 344567789999
Q ss_pred EEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEe
Q 000503 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1304 (1459)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp 1304 (1459)
|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++.+|++|+|||
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCccHHHhcCcCCCC-ChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000503 1305 QSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1459)
Q Consensus 1305 Qdp~lf~gTIReNLdp~~~~-~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1459)
||+++|+||||||+..+++. +|||+++|++.+|++++|.++ ||||.++|+|.||||||||||+||||++++|+||||
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 99999999999999988765 679999999999999999999 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1382 DEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|.|+|+||++. +|.|+++++.+
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 67999999865
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=753.71 Aligned_cols=542 Identities=26% Similarity=0.401 Sum_probs=439.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++........++++....+... ........+...++++.++..++.+...+...+.+.+...++|.++++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 21 LLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444445555666666665444321 11112233444455555566667777777777778999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|+++|++++.|++++|+++|++.++..+......+...++.+++.++++...+|.+.++++....++......+.+..+.
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887775555556667777777777777766655554444444444445544566
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+....+.+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788999999999999999999999998888888777766665444444433333333333222222111111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEE
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1459)
... ..+..+.|.+...+.+...+..++..+...+..++....+.+|+.++.+.+++...+.. +.++..|.|+|
T Consensus 259 ~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~I~f 331 (567)
T COG1132 259 FLV----LSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---PLKDTIGSIEF 331 (567)
T ss_pred HHH----HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---CCCCCCCeEEE
Confidence 110 12335688899999999999999999999999999999999999999998665322111 13456788999
Q ss_pred EEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
+||+|+|++ .+++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.|||+||++++.+++|++|++|||
T Consensus 332 ~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 332 ENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 999999975 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1306 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
||+||+|||||||+++++ .+|||+++|++.++++|+++++ |+||.+||+|.+||||||||+|||||++++|+|||||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999987 6999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
||||++|++||+.|++.+++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|++||+.++
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 999999999999999999988889999999999999999999999999999999999999997 679999998765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-76 Score=749.39 Aligned_cols=563 Identities=19% Similarity=0.246 Sum_probs=436.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 889 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1459)
Q Consensus 889 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1459)
++.|.+...+..+. .+++.++...+....++.+.+..+.... .........+..+++++.++..++.+++.+.....+
T Consensus 13 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (588)
T PRK11174 13 LKQQSKPAKRWLNL-SILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAG 91 (588)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544333322 2244445555555666666655543110 011111223444555566667777888888888899
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 000503 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1459)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1459)
.+...+++.++++++++.|..+|++.++|++++|+++|++.+++.+...+..++..++..++.++++.+.+|.+.++++.
T Consensus 92 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 171 (588)
T PRK11174 92 QHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777777777777777777777777766554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1459)
Q Consensus 1048 l~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1127 (1459)
...+...+...+.+..++..+...+..+.+.+.+.|.++|+++||+|++|+++.+++.+..++..+..........+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444445555555566677889999999999999999999999999999888887776655544444444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCCCCCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 000503 1128 RLQLLAAFIISFIA-TMAVIGSRGNLPATF----STPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1459)
Q Consensus 1128 ~l~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~ 1202 (1459)
...++..+.+.++. ...... .+....+. .+.....+++.++..+..++..+...+.++..+..+.+|+.++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 252 VLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43333332221111 111111 11111111 1222333344566677888999999999999999999999999987
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEE
Q 000503 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1459)
Q Consensus 1203 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1459)
++++...... +.+.+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|++ |++|+|.
T Consensus 331 ~~~~~~~~~~-~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 331 PLAHPQQGEK-ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCcccCCCcc-ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 6643211111 1111234679999999887654 57999999999999999999999999999999999999 9999999
Q ss_pred ECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCC
Q 000503 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1359 (1459)
Q Consensus 1283 IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LS 1359 (1459)
+||+|+++++.+++|++|+||||||++|+|||||||.+++ +.+|+|+++|++.|+++++++++ |+||.+||+|.+||
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999885 47999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecCh
Q 000503 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p 1439 (1459)
|||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHHhh
Q 000503 1440 QTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1440 ~eLl~~~~~~f~~l~~~~ 1457 (1459)
+||++++ +.|+++++.+
T Consensus 568 ~eL~~~~-~~y~~l~~~q 584 (588)
T PRK11174 568 AELSQAG-GLFATLLAHR 584 (588)
T ss_pred HHHHhcc-hHHHHHHHHh
Confidence 9999864 6999999765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-75 Score=755.85 Aligned_cols=540 Identities=26% Similarity=0.371 Sum_probs=437.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 903 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1459)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 982 (1459)
..+++.++........+++.+...+..............+.+++++.++..++.+++.+.+.+.+.+...++|+++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555666666677777666653221111111222344455556667777888888889999999999999999999
Q ss_pred hcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1459)
Q Consensus 983 l~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~ 1062 (1459)
++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++....+...+.+.+.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888888888888888888877655444444444444445444
Q ss_pred HHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000503 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS---LWLSLRLQLLAAFIISF 1139 (1459)
Q Consensus 1063 sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~wl~~~l~~~~~~~~~~ 1139 (1459)
.++..+...+..+...+++.|+++|+++||+|++|+++.+++.+..++..+......... .|....+..+..+++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566677899999999999999999999999999998888776655443322 23322222222222221
Q ss_pred HHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCC
Q 000503 1140 IATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPF 1219 (1459)
Q Consensus 1140 ~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~ 1219 (1459)
+....+. .+..+.|.+..++.|...+..++..+...+.++.++..+.+|+.++++.+++...... ..+++.
T Consensus 405 ~g~~lv~-------~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~ 475 (711)
T TIGR00958 405 YGGQLVL-------TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAPLNL 475 (711)
T ss_pred HHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCCCCC
Confidence 1111121 3456788888899999999999999999999999999999999999987665422111 122455
Q ss_pred CccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhc
Q 000503 1220 QGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1298 (1459)
+|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 7889999999999753 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1299 RFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||||||++|+|||||||.++. ..+|+++++++++++++++++++ |+||.+||+|.+||||||||++||||++++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999774 46889999999999999999998 999999999999999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++ |.|++|+
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~~lv 711 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchHhcC
Confidence 99999999999999999999999 3445799999999999999999999999999999999999999864 6898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=750.54 Aligned_cols=541 Identities=21% Similarity=0.245 Sum_probs=437.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
+..++........++......|..-..........+..+++++.++..++.+++.+.....+.+...+++..+++++++.
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44445555556666666655553211111111222344555566677788888899999999999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|+.||++.++|++++|++ |++.+.+.+...+...+..+..+++.++++.+.+|++.++++...+++..+.....+..+.
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 7888888777766666666655666666667777766655444333333333333333333
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+...+..+...+++.|+++|+.+||+++.|+++.+++.+..++..+..+.....+.|.......+..+...++..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566789999999999999999999999999999999988888887777777666555544332222211111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEE
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1459)
... ..+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|...... ...+..|.|+|
T Consensus 382 ~lv----~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~---~~~~~~~~I~~ 454 (686)
T TIGR03797 382 SLL----GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKT---DPGKLSGAIEV 454 (686)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC---CCCCCCceEEE
Confidence 110 12445788888888888899999999999999999999999999999987766422111 11234578999
Q ss_pred EEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+++++|||
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 99999997666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000503 1306 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1383 (1459)
||++|+|||||||.++++.+|++++++++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+||||||
T Consensus 535 ~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred CCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999988778999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1384 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1384 aTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
|||+||++||+.+++.|++. ++|+|+||||++++..||||+||++|+|+|.|+|+||+++ +|.|++|++.+
T Consensus 615 pTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 615 ATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred CccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 99999999999999999876 6899999999999999999999999999999999999985 57999998753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-74 Score=750.46 Aligned_cols=541 Identities=22% Similarity=0.308 Sum_probs=440.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
+..++..+.....+++.+...|.............+..+++++.++..++.+++.++....+.+...+++.++++++++.
T Consensus 161 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 240 (710)
T TIGR03796 161 LAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRL 240 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444455555566666665553211111111223344555566677788888999999999999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|++||++.++|++++|++.| ..+.+.+...+...+..++.+++.++++.+.+|+++++++...+++..+...+.+..+.
T Consensus 241 ~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 319 (710)
T TIGR03796 241 PVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVD 319 (710)
T ss_pred CHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 56777777777777777777777777777888877666555554444444444444444
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+......+...+++.|+++|+.+||++++|+.+.+++.+..++..+..+.......|.......+..+...++..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677889999999999999999999999999998888887777766666666555555444332222211111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccC----C-CCCCCCCCC
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY----Q-SLSPDWPFQ 1220 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~----~-~~~~~wp~~ 1220 (1459)
... ..+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|..... . ...+.++..
T Consensus 400 ~~v----~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~ 475 (710)
T TIGR03796 400 LRV----MEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475 (710)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCC
Confidence 100 1244678888888889999999999999999999999999999999998877643221 0 011113456
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+++
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 88999999999987667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1301 AVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+||||||++|+|||||||.+++ ..+|++++++++.++++++++++ |+||.++|+|.+|||||||||+||||++++|+
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999998875 46899999999999999999998 99999999999999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+||++|+|+|.|+|+||+++ ++.|++|+
T Consensus 636 iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 636 ILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 9999999999999999999999987 58999999999999999999999999999999999999986 56899987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-74 Score=745.45 Aligned_cols=557 Identities=25% Similarity=0.340 Sum_probs=438.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1459)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 965 (1459)
+..++.|++...+.+ ...++..++..+.....+++++.+.|.............+..+++++.++..++.+++.++...
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 144 LLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554333322 2233444555566666777887777643211111112223334455556677788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 000503 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1459)
Q Consensus 966 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1459)
.+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+.+.+...+...+..++.+++.++++.+.+|++++++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 301 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999998 88877776655555555555555555556666666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1459)
Q Consensus 1046 ~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1125 (1459)
+...+++..+...+.+..++..+......+...+++.|+++|+.+||+||.|+.+.+++.+..+...+..+.......+.
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333444444455555555566778889999999999999999999999999888887777766554444333
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 000503 1126 SLRLQLLAA---FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1459)
Q Consensus 1126 ~~~l~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~ 1202 (1459)
.....++.. +++..++...+. .+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~-------~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVM-------RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333222222 222222222221 3456788888888999999999999999999999999999999999988
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEE
Q 000503 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1459)
Q Consensus 1203 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1459)
++|..... ...+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|+
T Consensus 455 ~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 455 DSEFINKK-KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCcccccc-cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 77653221 111234557899999999999643 5799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcC--CCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCC
Q 000503 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358 (1459)
Q Consensus 1283 IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~--~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~L 1358 (1459)
+||+|+++++.+++|++++||||||++|+|||||||.++ ...+|++++++++.++++++++++ |+||.++|+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 999999999999999999999999999999999999987 346899999999999999999998 9999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecC
Q 000503 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~ 1438 (1459)
||||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||++++..||+|+||++|+++|.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred hhHHhccCCcHHHHHHH
Q 000503 1439 PQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1439 p~eLl~~~~~~f~~l~~ 1455 (1459)
|+||+++ +|.|++|++
T Consensus 692 ~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 692 HDELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHHhc-CCcHHHHhh
Confidence 9999986 579999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=725.51 Aligned_cols=543 Identities=24% Similarity=0.349 Sum_probs=432.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 904 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYST--SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 981 (1459)
Q Consensus 904 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~--~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 981 (1459)
.+++.++........++++.+..+........... ..++.+++++.++..++.+.+.+.....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666777777766632111111110 1112234444455666777777888888999999999999999
Q ss_pred HhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 982 IVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061 (1459)
Q Consensus 982 vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~ 1061 (1459)
+++.|.++|++.+.|++++|+++|++.+++.+...+..++..+..+++.++++.+.+|++.++++..+.+...+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888777777777777777776554332222222222222333
Q ss_pred HHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000503 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL-SLRLQLLAAFIISFI 1140 (1459)
Q Consensus 1062 ~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 1140 (1459)
..+...+......+....++.|+++|+.+||+|+.|+++.+++.+..+...+..+.....+.+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334456677899999999999999999999999999888777666655444333322 222222222211111
Q ss_pred HHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCC
Q 000503 1141 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220 (1459)
Q Consensus 1141 ~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~ 1220 (1459)
.+. .+. ...+..+.|.+..++.+...+..++..+...+.++++...+.+|+.++++.++++.... ..++..
T Consensus 268 ~~~--~~~---~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~ 338 (592)
T PRK10790 268 LML--FGF---SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND----DRPLQS 338 (592)
T ss_pred HHH--HHH---HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC----ccCCCC
Confidence 111 111 11345678888888899999999999999999999999999999999998765432111 123345
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++++++|++|
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 789999999999754 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||||||.+|+||||+||.+++..+|++++++++++|++++++.+ |+||.++|+|.+||||||||++||||++++|+|
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred EEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999999999888999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||++++ +.|++|++.+
T Consensus 498 lllDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~~l~~~~ 575 (592)
T PRK10790 498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMYQLQ 575 (592)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999875 6999998754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-73 Score=724.37 Aligned_cols=544 Identities=25% Similarity=0.356 Sum_probs=442.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++...+....+++++...+.............+...++++.++..++.+++.+.....+.+....++..+++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444445556666655543211111111112222334455666777777777788888899999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|..+|++.+.|++++|+++|++.+.+.+...+..++..++.+++.++++.+.+|+++++++..+++...+.....+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888888888887777777776655544444444444444444444
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+......+.+.+++.|.++|+.+||+|+.|+.+.+++.+..+...+..........|.....+.+..+...++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677889999999999999999999999999999999988888777666666666555554433222221111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEE
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1459)
+.. ..+..+.|.+..++.+...+..++..+...+.++.....+.+|+.++.+.+++...+.. ...|..+.|+|
T Consensus 272 ~~~----~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~i~~ 344 (582)
T PRK11176 272 FPS----VMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR---VIERAKGDIEF 344 (582)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---CCCCCCCeEEE
Confidence 100 12456788888888898999999999999999999999999999999987655322111 11244568999
Q ss_pred EEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 345 ~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred EEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEcc
Confidence 99999998666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCC--CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000503 1306 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~--~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1459)
||++|+|||||||..+. .++|++++++++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+||||
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil 504 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999998763 36899999999999999999999 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1382 DEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
|||||+||++|++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|++++ +.|++|++.+
T Consensus 505 DEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~~~ 579 (582)
T PRK11176 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKMQ 579 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999865 6999998753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-73 Score=667.31 Aligned_cols=513 Identities=24% Similarity=0.342 Sum_probs=437.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHH
Q 000503 937 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016 (1459)
Q Consensus 937 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~ 1016 (1459)
....+++.++++.++..++.+.+.......+.++...+|..+++++.+.+..+-++.|+|++....+..++.++..+...
T Consensus 38 ~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 38 SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34456667777778888888888888888999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHh
Q 000503 1017 LNILLANFVGLLGIAVVLSYVQVF---FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRA 1093 (1459)
Q Consensus 1017 l~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIra 1093 (1459)
+.....+.+..+.+++.+.+.+|. ++++..|++.++..+...- .+...+..-.+...+.+||.|.+.|+.|+|+
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~---a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~ 194 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA---AKDASEKQFSALARLSGHFLDRLRGLETLRA 194 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 888888877777776666666554 4555666666554432211 1111122233445677999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHH
Q 000503 1094 FKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1173 (1459)
Q Consensus 1094 f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~ 1173 (1459)
|+..+...+++.+..++..+..+....++.-.+..+|++..+.+.++++...+..-+. +..+....-+++..+-.+.
T Consensus 195 f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~---G~ltl~~~l~~LiLAPEff 271 (559)
T COG4988 195 FGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGE---GDLTLFAGLFVLILAPEFF 271 (559)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999998999999998877766665544332211 2334444455566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEE
Q 000503 1174 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQV 1253 (1459)
Q Consensus 1174 ~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gekv 1253 (1459)
.++..+-..|........+.+.+..+.+.|.+...........|..+.+++.+|++++|+++. ++++|+||+++|||++
T Consensus 272 ~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~t 350 (559)
T COG4988 272 QPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLT 350 (559)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEE
Confidence 899999999999999999999999999887765333222223344455677779999998664 8999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHH
Q 000503 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSV 1332 (1459)
Q Consensus 1254 gIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~a 1332 (1459)
||||+||||||||+++|+|+.+|++|+|.+||+|+.+++.+++|+++++|||+|++|+|||||||.+++. .+|++++++
T Consensus 351 alvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~a 430 (559)
T COG4988 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAA 430 (559)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876 689999999
Q ss_pred HHHhcHHHHHHh-CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000503 1333 LEKCHVKEEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1411 (1459)
Q Consensus 1333 L~~~~l~~~i~~-lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~ 1411 (1459)
++++++.++++. .||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+
T Consensus 431 l~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 431 LDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred HHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 999999999986 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1412 IAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1412 IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
||||++.+.++|+|+|||+|+++|.|+|++|.+++ |.|++|++++
T Consensus 511 itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~~q 555 (559)
T COG4988 511 ITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQ 555 (559)
T ss_pred EEcChHHHhcCCEEEEecCCceeccCCHHHHhhcC-cHHHHHHHHH
Confidence 99999999999999999999999999999999865 6999999864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=731.93 Aligned_cols=533 Identities=24% Similarity=0.320 Sum_probs=428.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++........++.++...|.............+..+++++.++..++.+++.++....+.+...+++..+++++++.
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444555566667777666653211111111122333444455667778888889999999999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|+.| ++.++|++++|+ +|++.+.+.+...+...+..++.+++.++++.+.+|+++++.+..+.++..+..++.+..++
T Consensus 234 ~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 311 (694)
T TIGR03375 234 RMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311 (694)
T ss_pred Cccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 788999999999 79999998887776666666666666666666777766554443333333333334444444
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+...+..+...+++.|+++|+++||+|++|+.+.+++.+..++..+..+.....+.+.....+.+..+...++..+..
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677889999999999999999999999999999888887777766555555444444433322111111111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEE
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1459)
... ..+..+.|.+..++.+...+..++..+...+.++.....+.+|+.++++.++|...... .....+..|.|+|
T Consensus 392 ~~v----~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~~I~~ 466 (694)
T TIGR03375 392 YLI----SDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR-FLHRPRLQGEIEF 466 (694)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CCCCCCccceEEE
Confidence 100 12456788888889999999999999999999999999999999999988776432111 1111234678999
Q ss_pred EEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||
T Consensus 467 ~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 467 RNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred EEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 99999997666679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1306 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
||++|+|||||||.++++ .+|++++++++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+|+|||
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998865 7899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+++|.|+|+||+++
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999998899999999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-74 Score=725.91 Aligned_cols=516 Identities=23% Similarity=0.303 Sum_probs=418.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHH
Q 000503 937 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016 (1459)
Q Consensus 937 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~ 1016 (1459)
....+...|+.+++...+..++...++.+.+.|...++|.+.+++++|+++.|||.+..|++..|++.|++.+.+.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 44566777777888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCc
Q 000503 1017 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKS 1096 (1459)
Q Consensus 1017 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~ 1096 (1459)
+..++..+...++.+++.++..|.+.+++++...+.......+.+..-.....+..+.+.--+...|++.+++|+.+|+-
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999888888888888777777766554443333222222222222222222333334445678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 000503 1097 EDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1176 (1459)
Q Consensus 1097 e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l 1176 (1459)
|+...++|.+.++...|...... .|.++.....-.++.+..+....++... ......++|.+..++...+.-...+
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~l-i~~~~~~~g~v~~v~~~vl~g~~sL 304 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTL-ILNGGYNGGDVITVFFSVLIGGMSL 304 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeehhhhhhhh
Confidence 99999999999988887765432 3333333222222222222222222110 0112334555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCC-CccceeeeEEEeCCcEEEE
Q 000503 1177 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGI 1255 (1459)
Q Consensus 1177 ~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~-~~vL~~isl~I~~GekvgI 1255 (1459)
+.....+..+.++..|..++.+.++..++..............+|.|+|+||+|+|+... .++|+|+||+|++||.||+
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 777777888888999999999998765543211111112223579999999999997542 3799999999999999999
Q ss_pred ECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHH
Q 000503 1256 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLE 1334 (1459)
Q Consensus 1256 vGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~ 1334 (1459)
||+|||||||++++|.|+|+|++|+|+|||.|+.+++.++||++||+|.|||+||++||+|||.++.+ .+++|+.+|++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 58999999999
Q ss_pred HhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 000503 1335 KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1412 (1459)
Q Consensus 1335 ~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~I 1412 (1459)
.++.++++..+ |+||.+||+|.+||||||||+||||||+|+|+|||||||||+||+++|+.+|++|++..+|+|.|+|
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV 544 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVV 544 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1413 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1413 aHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++|++.+
T Consensus 545 aHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 545 AHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred eeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 9999999999999999999999999999999987 8999999765
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=650.22 Aligned_cols=499 Identities=22% Similarity=0.350 Sum_probs=419.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhH
Q 000503 948 FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGL 1027 (1459)
Q Consensus 948 l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~ 1027 (1459)
+++...+..++..+.......+.-.++|.++|+++...+..-..+...|+++||+..|++.+|+.+-..+...+..+...
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 44555555565555666678888899999999999999999999999999999999999999999999999888888888
Q ss_pred HHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHH
Q 000503 1028 LGIAVVLSYVQVFFLLLLVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1106 (1459)
Q Consensus 1028 l~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~ 1106 (1459)
++..+.+++.+|++++.+... .+....+...+.+..|...+.-...+..++++|.|.+.|....+.||.++.|.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 888888888887766544333 3333334444555556666666678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000503 1107 HVVLYQRTSYSELTASLWLSLRLQLLAAFIIS-FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL-SSFT 1184 (1459)
Q Consensus 1107 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~-~~~~ 1184 (1459)
..+.+.+.......+..|....+.++.++.+. .+..++.....+ ..+.-...+++..++.....+..+. ..+.
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G-----~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAG-----ALAQPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-----CcchhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 99999999999999999999988888876655 333333311111 1111122222222233444444444 6667
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHH
Q 000503 1185 ETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1264 (1459)
Q Consensus 1185 ~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKS 1264 (1459)
++.....|++|+.+..+.++|...+....+ -+.+ .++++||+|+|+++.+++|+|+||++++||||||+||||||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~--~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDEQTA--TTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCccccC--Cccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHH
Confidence 888899999999999988777533211111 1122 7999999999998888999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHH
Q 000503 1265 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVE 1343 (1459)
Q Consensus 1265 TLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~ 1343 (1459)
|++++|.|.++|++|+|..+|.+++.++.+++|+.|++++|.+.+|+||+|+||...++ .+|||+|++|+++||.+.++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654 59999999999999999999
Q ss_pred hC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh
Q 000503 1344 AV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1421 (1459)
Q Consensus 1344 ~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~ 1421 (1459)
+. ||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000503 1422 MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1422 ~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~ 1455 (1459)
||||+|||+|+++|+|+|.+|+++ +|.|++|++
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 999999999999999999999995 579999976
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-72 Score=708.25 Aligned_cols=504 Identities=22% Similarity=0.300 Sum_probs=414.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHH
Q 000503 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024 (1459)
Q Consensus 945 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~ 1024 (1459)
+.++.++..++.++..+.....+.+...+++.++++++++.|+.+|++.++|++++|+++|++.+++.+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777778888889999999999999999999999999999999999999999999999888888888888
Q ss_pred HhHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHH
Q 000503 1025 VGLLGIAVVLSYVQVFFLLLLVPFWF-IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103 (1459)
Q Consensus 1025 ~~~l~~~~~~~~~~~~~~~~~~pl~~-~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~ 1103 (1459)
+.+++.++.+++.+|.+.++++..+. ++..+..++.+..+...+...++.+.+.+.+.|.++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88888888888888877654432222 22223333444444444445566777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000503 1104 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA-APIVSLLGNFLSS 1182 (1459)
Q Consensus 1104 ~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~-~~~~~~l~~l~~~ 1182 (1459)
+.+..++..+..+.......+.....+++..+...++..+..... .+..+.|.+..++.|. ......+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-----~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~ 300 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-----GGNAQPGALIALFVFAALAAFEALMPVAGA 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887776666655555555444433222222211111 1233455554444443 3334566677778
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCc
Q 000503 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1262 (1459)
Q Consensus 1183 ~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSG 1262 (1459)
+.+......+.+|+.++++.++|........ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 301 ~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 301 FQHLGQVIASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCcccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCC
Confidence 8888899999999999998776532111111 12345789999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHH
Q 000503 1263 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEE 1341 (1459)
Q Consensus 1263 KSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~ 1341 (1459)
||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||++|+|||||||.++. ..+|+++++++++++++++
T Consensus 379 KSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~ 458 (574)
T PRK11160 379 KSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKL 458 (574)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 4689999999999999999
Q ss_pred HHh-CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHh
Q 000503 1342 VEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1420 (1459)
Q Consensus 1342 i~~-lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~ 1420 (1459)
+++ .||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.
T Consensus 459 i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~ 538 (574)
T PRK11160 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE 538 (574)
T ss_pred HcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH
Confidence 985 4999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000503 1421 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1421 ~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~ 1456 (1459)
+||+|++|++|+++|.|+|+||+++ +|.|++|++.
T Consensus 539 ~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 539 QFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred hCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 9999999999999999999999986 5799999874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-72 Score=711.67 Aligned_cols=544 Identities=25% Similarity=0.375 Sum_probs=458.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++..++..+.+++++...+.............+..+++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 100 (571)
T TIGR02203 21 VAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGL 100 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455555555666666655543211111112233344566777777888888888999999999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|+++++++...++...+...+.+..++
T Consensus 101 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~ 180 (571)
T TIGR02203 101 PVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180 (571)
T ss_pred CHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888888777766666666666666666666
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+......+...+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (571)
T TIGR02203 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIAL 260 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888999999999999999999999999999999999988888777776766666555554432222211111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEE
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1459)
+. ...+..++|.+..++.++..+..++..+...+.++.....+.+|+.++++.+++...... +. -+..+.|++
T Consensus 261 ~~----~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~--~~~~~~i~~ 333 (571)
T TIGR02203 261 FQ----AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-AI--ERARGDVEF 333 (571)
T ss_pred HH----HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CC--CCCCCeEEE
Confidence 10 013456789899999999999999999999999999999999999999987665422111 11 124578999
Q ss_pred EEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000503 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1459)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1459)
+||+|+|++..+++|+|+||+|+|||+++|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999997655679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccHHHhcCcCC--CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000503 1306 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1459)
Q Consensus 1306 dp~lf~gTIReNLdp~~--~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1459)
||++|+|||||||..++ +.+|++++++++++++++++.++ ||||.++|+|.+|||||||||+||||++++|+|++|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999875 57899999999999999999998 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1382 DEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+++++++ +.|+++++++
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHHHHHHh
Confidence 99999999999999999999988999999999999999999999999999999999999999864 6899988753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-71 Score=693.40 Aligned_cols=543 Identities=23% Similarity=0.280 Sum_probs=471.0
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1459)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (1459)
+-++..++-|++.+.-..+..++..+++++.|++.+.++|.+-.+.+......+++++.+..++.+++.....|...+++
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888889999999999999999999999999987777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000503 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1459)
Q Consensus 348 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~ 425 (1459)
.|+...+...+|+|.+++|...++++++|++++.++ |.+.|.+++.. +..+...++-++....| +..-+.-+++++
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm-~~ys~~L~li~l 300 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVM-FLYSWKLTLIVL 300 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999886 88888886543 33344455554444434 444444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1459)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1459)
+.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+.++...+.........
T Consensus 301 ~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 380 (709)
T COG2274 301 AAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILN 380 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666777788888999999999999999999999999999999999999999999999988888888888777776665
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000503 506 FFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1459)
Q Consensus 506 ~~~~~~~~~--~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1459)
.+......+ +.+++||++.+.++.+|.|+++++.++.+.+..|+..+.+.+..+.+++++.+|+.+.++.|...+...
T Consensus 381 ~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~ 460 (709)
T COG2274 381 TIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK 460 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 554444433 456889999999999999999999999999999999999999999999999999999998765433111
Q ss_pred hhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000503 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1459)
... ......+.|+++|++|+|..+++ ++|+|+||+|++||.++|||+||||||||+|+|+|.++|
T Consensus 461 ~~~-----------~~~~~~g~I~~~nvsf~y~~~~~----~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 461 TLI-----------HLPKLQGEIEFENVSFRYGPDDP----PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred ccc-----------cccccCceEEEEEEEEEeCCCCc----chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 000 01235678999999999986532 359999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCC-HHHHHHHHHHhcchhhHhhccCCCcccccC
Q 000503 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1459)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~-~~~~~~v~~~~~l~~di~~~~~gd~t~ig~ 729 (1459)
++|+|.++| .|+||+|++.+|+|||||||.++.+.. .|+..++++..+.++++..+|.|++|.+||
T Consensus 526 ~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 999999998 599999999999999999999998754 478888888889999999999999999999
Q ss_pred CCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCC
Q 000503 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 809 (1459)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G 809 (1459)
+|.+||||||||++||||++++|+|+||||||||||+++++.|.+++ .. ...++|+|+||||++.++.||+|++|++|
T Consensus 606 ~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL-LQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HH-HhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999984 33 56789999999999999999999999999
Q ss_pred eEEEecCHHHHHhccccCcc
Q 000503 810 QVKWIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 810 ~i~~~g~~~~l~~~~~~~~~ 829 (1459)
+|+++|+++|+++..+.+.+
T Consensus 684 kiv~~gs~~ell~~~g~y~~ 703 (709)
T COG2274 684 KIVEQGSHEELLAQGGLYAR 703 (709)
T ss_pred ceeccCCHHHHHHhcChHHH
Confidence 99999999999987665544
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-71 Score=717.95 Aligned_cols=542 Identities=23% Similarity=0.331 Sum_probs=436.2
Q ss_pred HHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 000503 908 AILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987 (1459)
Q Consensus 908 ~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~ 987 (1459)
.++........++.++...|..-..........+..+++++.++..++.+++.++....+.+...+++.++++++++.|+
T Consensus 148 s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~ 227 (694)
T TIGR01846 148 SLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPL 227 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33444444555666666555321111111222334455566666778888899999999999999999999999999999
Q ss_pred ccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067 (1459)
Q Consensus 988 ~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~ 1067 (1459)
.||++.++|++++|+ +|++.+.+.+...+...+..++.+++.++++.+.+|.++++++..++++..+.....+..+...
T Consensus 228 ~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 306 (694)
T TIGR01846 228 GYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306 (694)
T ss_pred HHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 6999999887766666665555555556666777777665544333333333222222222222
Q ss_pred HHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000503 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG 1147 (1459)
Q Consensus 1068 ~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~ 1147 (1459)
+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.....+.+.....+++..+...++..+....
T Consensus 307 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 386 (694)
T TIGR01846 307 EDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33334556677999999999999999999999999999999988888777766666666555554443222221111110
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEE
Q 000503 1148 SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1227 (1459)
Q Consensus 1148 ~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~n 1227 (1459)
. ..+..+.|.+..+..+...+..++..+...+.+++....+.+|+.++++.++|...... .......|.|+|+|
T Consensus 387 v----~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~--~~~~~~~~~i~~~~ 460 (694)
T TIGR01846 387 V----IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGL--AALPELRGAITFEN 460 (694)
T ss_pred H----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC--CCCCCCCCeEEEEE
Confidence 0 12456788888888899999999999999999999999999999999988776432111 11112357899999
Q ss_pred EEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCC
Q 000503 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP 1307 (1459)
Q Consensus 1228 Vs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp 1307 (1459)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|++++||||||
T Consensus 461 vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 461 IRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred EEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 99999876667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000503 1308 FLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384 (1459)
Q Consensus 1308 ~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEa 1384 (1459)
.+|+|||||||.+++ ..+|++++++++.++++++++++ |+||.++++|.+||||||||++||||++++|+|||||||
T Consensus 541 ~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEp 620 (694)
T TIGR01846 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620 (694)
T ss_pred eehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 999999999998865 46899999999999999999998 999999999999999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1385 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1385 TS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+||++++ |.|++|++.+
T Consensus 621 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~~ 692 (694)
T TIGR01846 621 TSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQ 692 (694)
T ss_pred CcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHHHhh
Confidence 99999999999999999988899999999999999999999999999999999999999864 7999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-71 Score=663.47 Aligned_cols=540 Identities=20% Similarity=0.221 Sum_probs=443.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1459)
Q Consensus 272 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1459)
.+.+..||.+..+.++.++.....+.-|.++.+++|.+.. .+....-.-....+..++++.+++...+.+.....+.++
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888899999999999999999998876 333222233445666778888899988988889999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Q 000503 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLAIT 428 (1459)
Q Consensus 351 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~-~lL~~~lg~a~l~~~~v~ 428 (1459)
-..+...+|++.++...+.+++..+|++++.++.|++.+.+.+ .++.+..-+.++...++ +|++..+.++.+.-+ ++
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i-~~ 298 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI-VV 298 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH-Hh
Confidence 9999999999999999999999999999999999999998754 45666666666654443 444444444444333 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1459)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1459)
.+.+.+..+++++.++..++.+++..+-.+...|.+++||+||+|+.|+...++..+.-++-++..+|......+....+
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~ 378 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGST 378 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHH
Confidence 33344567778888888888888888889999999999999999999998877776654444444444443333332222
Q ss_pred HH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000503 509 AT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1459)
Q Consensus 509 ~~--~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1459)
.. ....++++.+|.|++.++.||++.+.+++.+--.+..++..+...++.++++..+-+|+.+|++.+..-+.. . .
T Consensus 379 ~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G-~ 456 (716)
T KOG0058|consen 379 NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-G-T 456 (716)
T ss_pred HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-C-c
Confidence 22 234567788999999999999999999999999999999999999999999999999999999765432211 0 0
Q ss_pred CCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000503 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1459)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1459)
..| ....+.|+|+|++|+||.+++ .++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++|
T Consensus 457 ~~p----------~~~~G~IeF~~VsFaYP~Rp~---~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 457 LAP----------DHLQGVIEFEDVSFAYPTRPD---VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccc----------ccccceEEEEEeeeecCCCCC---chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 011 134578999999999998755 4459999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
+|.+|| +||+|.|+|.||++||+|||.+|.+ .++|+..++.+.+..++.|..+|+|++|.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 999998 5999999999999999999999975 57788999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
.|||||||||||||||+++|.||||||+|||||++++..+ +.++.. ..+++|||+|+||++.+++||+|+++++|+++
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 9999999999999999999999999999999999976654 444543 67789999999999999999999999999999
Q ss_pred EecCHHHHHhcc-ccCcc
Q 000503 813 WIGSSADLAVSL-YSGFW 829 (1459)
Q Consensus 813 ~~g~~~~l~~~~-~~~~~ 829 (1459)
|.|+|+|+++.. +.+.+
T Consensus 682 E~G~h~eLl~~~~gly~~ 699 (716)
T KOG0058|consen 682 EMGTHDELLSKPNGLYAK 699 (716)
T ss_pred ecccHHHHhhCcccHHHH
Confidence 999999999876 34443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-73 Score=638.37 Aligned_cols=493 Identities=24% Similarity=0.410 Sum_probs=396.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHH-hh
Q 000503 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLG-IA 1031 (1459)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~-~~ 1031 (1459)
+++.-+|+|+......-..+.+.-.+++++....+.|+-...+|+.+.-+.+..+.+. .+.....++.-.+.-+.. .+
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 4566677787777888889999999999999999999999999988876666554443 111111111111111111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHH
Q 000503 1032 VVLSYVQVFFLLLLVPFWFIYSKLQ----FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107 (1459)
Q Consensus 1032 ~~~~~~~~~~~~~~~pl~~~~~~~~----~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~ 1107 (1459)
-......+|+.+++.....+|..+. ..-.+..|.+...+.+++ +.-.+++-+.+|+|-|+.|++..++|.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 2223346777776666555554332 111223333333333433 34578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1108 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETE 1187 (1459)
Q Consensus 1108 ~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e 1187 (1459)
++.+|+..++....-..++..-+.+..+......+++++ .......+.|...+..+|.+++..+++++-..+..++
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY----~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ 503 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAY----RVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQ 503 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeee----eeeeccccccceehHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999888766554444443333322221111122211 1113345678888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHH
Q 000503 1188 KEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1267 (1459)
Q Consensus 1188 ~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl 1267 (1459)
++..-.|++.++++.++|-.+.+..+|- --.+|.|+|+||+|.|+++ +|||+||||+++||+.||+|||||+||||++
T Consensus 504 ~nfiDmEnmfdllkee~eVvd~P~a~pl-~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTim 581 (790)
T KOG0056|consen 504 KNFIDMENMFDLLKEEPEVVDLPGAPPL-KVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIM 581 (790)
T ss_pred HhhhhHHHHHHHhhcCchhhcCCCCCCc-cccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHH
Confidence 9999999999999887775332222222 2357999999999999876 4699999999999999999999999999999
Q ss_pred HHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC-
Q 000503 1268 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV- 1345 (1459)
Q Consensus 1268 ~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l- 1345 (1459)
++|+|++|.++|+|+|||+||+++..++||++||+||||.+||++||..||.+... .+|||+.+|.+.++++|.|-++
T Consensus 582 RlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 582 RLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred HHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999998764 5899999999999999999998
Q ss_pred -CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCE
Q 000503 1346 -GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE 1424 (1459)
Q Consensus 1346 -GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~Dr 1424 (1459)
|++|.|||+|-.||||||||+++||++|++|.|++||||||+||..||+.||.++.+..+++|.|+|||||+|+.++|.
T Consensus 662 egY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ 741 (790)
T KOG0056|consen 662 EGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADL 741 (790)
T ss_pred hhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000503 1425 ILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1425 IlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~ 1456 (1459)
|+|+++|+|+|.|+|+||+++++|.|++||+.
T Consensus 742 ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 99999999999999999999999999999953
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-70 Score=693.62 Aligned_cols=545 Identities=23% Similarity=0.307 Sum_probs=430.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000503 904 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 983 (1459)
Q Consensus 904 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 983 (1459)
+++..++..++....++++....|.... ......++.+++++.++..+..+...........+....+..+++++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666667777766653221 1112222333333333333334444444444555555667779999999
Q ss_pred cCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 984 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1063 (1459)
Q Consensus 984 ~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~s 1063 (1459)
+.|..+|++.+.|++++|+++|++.+.+.+...+...+..++..++.++++.+.+|+++++++.+.+++..+...+.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877666666666666666666666677777776665555555555666666666
Q ss_pred HHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1064 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1143 (1459)
Q Consensus 1064 r~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1143 (1459)
++..+......+.+.+++.|.++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777888899999999999999999999999999998888877766655555554444443332222221111
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccE
Q 000503 1144 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1223 (1459)
Q Consensus 1144 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1223 (1459)
..+.. ..+..+.|.+..++.++..+..++..+...+.++..+..+.+|+.++.+.+++........+. -+..+.|
T Consensus 261 g~~~v----~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~I 335 (588)
T PRK13657 261 GAALV----QKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-GRVKGAV 335 (588)
T ss_pred HHHHH----HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-CCCCCeE
Confidence 11110 134567888888888989999999999999999999999999999998765442111111111 1234679
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++++||
T Consensus 336 ~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 336 EFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999743 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1304 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1304 pQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
||||.+|+|||||||.+++ ..+|++++++++++++.++++++ |+||.++++|.+||||||||++||||++++|+|+|
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred ecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998875 46899999999999999999998 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
||||||+||++|++.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|++|+++ ++.|++|+++.+
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 99999999999999999999988889999999999999999999999999999999999999986 479999987653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-70 Score=695.58 Aligned_cols=547 Identities=24% Similarity=0.366 Sum_probs=435.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++........++.+....+..-..........++.+++++.++..++.+.+.++....+.+....++..+++++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 104 (576)
T TIGR02204 25 VALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISL 104 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555555555554443111111111222334445555556666777788888889999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|.++|++...|++++|+++|++.+++.....+..++..++.+++.++++.+.+|++.++++...++...+...+.+..+.
T Consensus 105 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~ 184 (576)
T TIGR02204 105 SPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRK 184 (576)
T ss_pred CHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888878777777777777777777777766554433333333333334444444
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1145 (1459)
..+.....+....+++.|.++|+++||+|+.|+++.+++.+..+...+..........|.......+..+...++..+..
T Consensus 185 ~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (576)
T TIGR02204 185 LSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGA 264 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677889999999999999999999999999999888877776655555555554443333221111111111
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEE
Q 000503 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1459)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1459)
.. ...+..+.|.+..+..++..+..++..+...+.++.....+.+|+.++++.++|........+..+|..+.|+|
T Consensus 265 ~~----v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (576)
T TIGR02204 265 HD----VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEF 340 (576)
T ss_pred HH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEE
Confidence 00 01244578888888889999999999999999999999999999999988765421111111122344578999
Q ss_pred EEEEEEecCCC-CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEe
Q 000503 1226 QNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1304 (1459)
Q Consensus 1226 ~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp 1304 (1459)
+||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+|
T Consensus 341 ~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~ 420 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420 (576)
T ss_pred EEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEc
Confidence 99999997543 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000503 1305 QSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1459)
Q Consensus 1305 Qdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1459)
|||++|+|||||||.++++ .+|++++++++++++.++++.+ |+||.++|+|.+||||||||++||||++++|+||||
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ilil 500 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLL 500 (576)
T ss_pred cCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999998654 5789999999999999999998 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1382 DEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
|||||+||.+|++.+.+.+++..+++|+|+||||++.+..||||++|++|+++|.|+|++|+++ ++.|++|++.+
T Consensus 501 DEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 501 DEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575 (576)
T ss_pred eCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhhc
Confidence 9999999999999999999998889999999999999999999999999999999999999985 57999998753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=692.42 Aligned_cols=534 Identities=19% Similarity=0.189 Sum_probs=420.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 270 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1459)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (1459)
++...+.+++.++...++.++..++..++|++++.++|.+.. +.+....+.++++++++.++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888889999999999999999999999997642 2222223344555666677788888888888899999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHH
Q 000503 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL---LYTQVKFAFVSG 424 (1459)
Q Consensus 349 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~l---L~~~lg~a~l~~ 424 (1459)
++...+...+|+|.++++...+.+.++|+++|.+++|++++.+... .+..++...+.+++++++ +.+.+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~- 171 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG- 171 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999998889999999999999999998653 455555555544433332 23333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000503 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYL 500 (1459)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~ 500 (1459)
++++...+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++ .|+.+.+..+.....
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 172 --TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344556778888888999999999999999999999999999999988887744 344443333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 501 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDAA---------MVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571 (1459)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~---------~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~ 571 (1459)
......+... .. +.++.++.+.+. +.++.| .+|+++.+...+..|+..++..+..+.++.++.+||.+
T Consensus 250 ~~~~~~~~~~-~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 11 122233334333 334444 45566677788899999999999999999999999999
Q ss_pred hhCCCCCchhhhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHH
Q 000503 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651 (1459)
Q Consensus 572 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKS 651 (1459)
+++.++..+.... ...+ ......|+++|++|.|+++ +++|+|+||+++||++++||||||||||
T Consensus 327 ~l~~~~~~~~~~~-~~~~----------~~~~~~i~~~~vsf~~~~~-----~~vL~~i~l~i~~G~~vaIvG~SGsGKS 390 (588)
T PRK11174 327 FLETPLAHPQQGE-KELA----------SNDPVTIEAEDLEILSPDG-----KTLAGPLNFTLPAGQRIALVGPSGAGKT 390 (588)
T ss_pred HHcCCCcccCCCc-cccC----------CCCCceEEEEeeEEeccCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 9976543211000 0000 0123459999999987642 2359999999999999999999999999
Q ss_pred HHHHHHhcCccCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHh
Q 000503 652 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDIS 717 (1459)
Q Consensus 652 tll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~ 717 (1459)
||+++|+|++ |++|+|.++| .|+||||+||||++||||||.+|++ .+++++.++++.|+++++++
T Consensus 391 TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 391 SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 9999999999 9999999987 5999999999999999999999964 89999999999999999999
Q ss_pred hccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchh
Q 000503 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797 (1459)
Q Consensus 718 ~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l 797 (1459)
.+|+|++|.+||+|.+|||||||||+||||++++|+|+||||||||||++++++|.+. +.. +.+++|+|+||||++.+
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~-~~~~~TvIiItHrl~~i 547 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNA-ASRRQTTLMVTHQLEDL 547 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEecChHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 444 55789999999999999
Q ss_pred hcCCEEEEEeCCeEEEecCHHHHHhccccCc
Q 000503 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828 (1459)
Q Consensus 798 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 828 (1459)
+.||+|++|++|+++++|+|+|+.++.+.+.
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~ 578 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLFA 578 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHhcchHHH
Confidence 9999999999999999999999987655443
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-70 Score=686.92 Aligned_cols=503 Identities=19% Similarity=0.238 Sum_probs=396.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLV--VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 983 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 983 (1459)
++.++..++....++.+++.++..... ......+.. .++++.++..++.++..+.....+.+...+++.+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 20 LLGALALGSAVALLGVSAWLISRAAEM--PPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555666666555432111 111111111 1223344556666777777778888999999999999999
Q ss_pred cCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000503 984 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIY-SKLQFFYRST 1062 (1459)
Q Consensus 984 ~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~-~~~~~~y~~~ 1062 (1459)
+.|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.++++....++ .....++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888888888887777777777888887766554433332 2233344444
Q ss_pred HHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1142 (1459)
Q Consensus 1063 sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1142 (1459)
.++..+...+..+.+.+++.|+++|+++||+|++|+.+.+++.+..++..+..........+......++..+...++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556678889999999999999999999999999999888888777665555444443333333222211111
Q ss_pred HHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCC-CCCCCCCCCc
Q 000503 1143 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ-SLSPDWPFQG 1221 (1459)
Q Consensus 1143 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~-~~~~~wp~~g 1221 (1459)
+.... ...+..+.|.+...+.++..+..++..+...+.++.....+.+|+.++++.++|...... .+...+|..+
T Consensus 258 ~g~~~----~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (529)
T TIGR02868 258 AGGPA----VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKP 333 (529)
T ss_pred HHHHH----HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCc
Confidence 11100 012345678888888888889999999999999999999999999999987765322111 1111244567
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|++++ .+++|++++
T Consensus 334 ~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheE
Confidence 89999999999754 4699999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1302 VVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
||||||++|+|||||||.+++ ..+|+++++|++.++++++++++ |+||.+||+|.+||||||||||||||++++|+|
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 46899999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccCh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRI 1416 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl 1416 (1459)
||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999988999999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=625.41 Aligned_cols=506 Identities=24% Similarity=0.369 Sum_probs=392.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHH
Q 000503 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1018 (1459)
Q Consensus 939 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~ 1018 (1459)
..-+..|.+..+...++..++.+.+++...++-+....+.++..+...+++|.+..+|.+.+.+.+-...+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999998888777766666555444444
Q ss_pred HHHHHHHhHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhc
Q 000503 1019 ILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKLQ---FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094 (1459)
Q Consensus 1019 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~pl~~~~~~~~---~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf 1094 (1459)
.++..++.+......+.+ ..+.++++++.....|..+. -.+|. ..|+....+....-+...|++.+-.+||+|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn---~fR~~~N~Adn~as~~~~dsL~Nye~VKsf 230 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN---RFRKAMNNADNSASRRAYDSLINYEIVKSF 230 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH---HHHHHHHhhhhHHHHHHHHHHhhHHHHHHc
Confidence 443333333222222222 22333333322222222111 11111 112222223333345678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 000503 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1174 (1459)
Q Consensus 1095 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1174 (1459)
+.|++..+++...+..+.+......+....+.+.-..+.. ...+.+.+.+..+ ...+..+.|......+...++..
T Consensus 231 NnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs---v~~~~im~l~~~g-i~~~~mtvgdlv~~n~l~~qL~~ 306 (591)
T KOG0057|consen 231 NNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS---VALTFIMVLGSNG-IAAGKMTVGDLVMVNSLLFQLSL 306 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH---HHHHHHHHHHhhh-hhhccccccchhhHHHHHHHHHh
Confidence 9999999999999998888765544333322222222221 1122222222222 22345567777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEE
Q 000503 1175 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVG 1254 (1459)
Q Consensus 1175 ~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gekvg 1254 (1459)
+++.+-..+.++-.++.-.+-++...+.... .... +.+.-..+|.|+|+||+|.|.++ +++|+|+||+|++|||||
T Consensus 307 ~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVa 382 (591)
T KOG0057|consen 307 PLNFLGSVYRELRQALTDMRTLFILLEVDED--IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVA 382 (591)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh--hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEE
Confidence 8888888888888777776666544322111 1111 12223446789999999999865 569999999999999999
Q ss_pred EECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHH
Q 000503 1255 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVL 1333 (1459)
Q Consensus 1255 IvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL 1333 (1459)
|||+|||||||++++|+||++ ++|+|+|||+||++++++.+|+.||+||||..||++||-+||.+++. .+|||+.+++
T Consensus 383 IvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~ 461 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEAC 461 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999876 4899999999
Q ss_pred HHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000503 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1411 (1459)
Q Consensus 1334 ~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~ 1411 (1459)
++++++|.+.++ |++|.|||+|..||||||||++||||+|++|+|+++|||||+||.+||+.|.+.|.+...++|+|+
T Consensus 462 k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~ 541 (591)
T KOG0057|consen 462 KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 (591)
T ss_pred HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred eccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1412 IAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1412 IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
|+||++++++||+|+++|+|+|+|.|+|+||++ +++.|+.+|..+
T Consensus 542 IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 542 IVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred EEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 999999999999999999999999999999999 678999888653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-69 Score=682.58 Aligned_cols=508 Identities=21% Similarity=0.280 Sum_probs=410.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHH
Q 000503 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1019 (1459)
Q Consensus 940 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~ 1019 (1459)
.|+++++++.++..++.++..+.....+.+...+++..+++++++.|+++|++.++|++++|+++|++.+.......+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~ 116 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLT 116 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555666667777777777889999999999999999999999999999999999999999998666555655
Q ss_pred HHHHHHhHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHH
Q 000503 1020 LLANFVGLLGIAVVL-SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED 1098 (1459)
Q Consensus 1020 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~ 1098 (1459)
++..++..++.++++ .+.+|.+.++++..+.+...+.+.+.+..++..+......+.+.+.+.|+++|+++||+|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 117 LVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 655544444444333 3555655444333333333334444444444444444566778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 000503 1099 YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1177 (1459)
Q Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~ 1177 (1459)
.+.+++.+..++..+..+.......+..........+...++... .... ..+..+.|.+..+..+...+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv-----~~g~lt~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 197 RQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV-----VNGSLTLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777766554444433332222222111111111 1111 1244578888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEEC
Q 000503 1178 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1257 (1459)
Q Consensus 1178 ~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvG 1257 (1459)
.+...+.++.....+.+|+.++.+.+++........+ +..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG 348 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICG 348 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEEC
Confidence 9999999999999999999999987654321111111 2356899999999998655679999999999999999999
Q ss_pred CCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHh
Q 000503 1258 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKC 1336 (1459)
Q Consensus 1258 rtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~ 1336 (1459)
+||||||||+++|.|+++|++|+|.+||.|+++++.+++|+++++|||+|++|+||+||||.++. ..+|++++++++.+
T Consensus 349 ~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~ 428 (569)
T PRK10789 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLA 428 (569)
T ss_pred CCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998874 46899999999999
Q ss_pred cHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q 000503 1337 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1414 (1459)
Q Consensus 1337 ~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaH 1414 (1459)
++++++.++ |+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+|||
T Consensus 429 ~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH 508 (569)
T PRK10789 429 SVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAH 508 (569)
T ss_pred CCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999988 999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000503 1415 RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1415 rl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~ 1456 (1459)
|++++..||+|++|++|+++|.|+|++|++++ +.|++|++.
T Consensus 509 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 509 RLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred chhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 99999999999999999999999999999865 689999874
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-68 Score=674.62 Aligned_cols=543 Identities=22% Similarity=0.300 Sum_probs=425.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000503 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1459)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1459)
+++.++..++....++.+++..+..... .....++..++++.++..+..++..........+....+++++++++++
T Consensus 25 ~~~~~~~~~~~~~~p~~~~~iid~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 101 (585)
T TIGR01192 25 VIANITLAAITIAEPILFGRIIDAISSK---SDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIIS 101 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555566666667666655532111 1111222222223333333344444444455556666677899999999
Q ss_pred CccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1459)
Q Consensus 985 ~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr 1064 (1459)
.|++||++.++|++++|+++|++.+.+.+...+...+..++.+++.++++.+.+|.++++++.+..++..+.+.+.+..+
T Consensus 102 l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (585)
T TIGR01192 102 MPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181 (585)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877777766666666666666667777777766655555555555566666666
Q ss_pred HHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1144 (1459)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1144 (1459)
+..+......+.+.+++.|+++|+++||+|+.++.+.+++.+..++..+..+.......+......++..+...++..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 261 (585)
T TIGR01192 182 NGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIG 261 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777889999999999999999999999999998888877766655444333333322222222111111111
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCC-CCccE
Q 000503 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWP-FQGLI 1223 (1459)
Q Consensus 1145 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp-~~g~I 1223 (1459)
... ...+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++.+.+++...... + ..++ ..+.|
T Consensus 262 ~~~----v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~-~~~~~~~~~i 335 (585)
T TIGR01192 262 TVL----VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-A-PELPNVKGAV 335 (585)
T ss_pred HHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-C-CCCCCCCCeE
Confidence 110 012445788888888888889999999999999999999999999999876554321111 1 1122 35679
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+|+||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+|+.+++.+++|+++++|
T Consensus 336 ~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 336 EFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999753 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1304 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1304 pQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
||||.+|++|+||||.++. ..+|++++++++.+++++++.++ |+||.++++|.+||||||||++|||||+++|+|||
T Consensus 415 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred ccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998874 45889999999999999999887 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
||||||+||.++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|++++ +.|+++++.+.
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~~~ 571 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLLRRSG 571 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHHHhCc
Confidence 999999999999999999999888899999999999999999999999999999999999999864 69999997653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=670.06 Aligned_cols=515 Identities=22% Similarity=0.284 Sum_probs=408.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTG-SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1459)
++.++..++....++.+++..+... ..........++++++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555556666665555321 111111223345556666777778888888888999999999999999999999
Q ss_pred CccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1459)
Q Consensus 985 ~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr 1064 (1459)
.|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|+++++++....+...+...+.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777777766666666666666776544333322222222222223223
Q ss_pred HHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000503 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIA-TM 1143 (1459)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~ 1143 (1459)
...+......+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555678899999999999999999999999999988888777766665555555555544433222211 11
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccE
Q 000503 1144 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1223 (1459)
Q Consensus 1144 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1223 (1459)
..... .+..+.|.+..++.++..+..++..+...+..+.....+.+|+.++++.++++.... +...+..+.|
T Consensus 250 ~~~~~-----~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~~~~i 321 (529)
T TIGR02857 250 GFRLL-----AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAPAPSL 321 (529)
T ss_pred HHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCCCCeE
Confidence 11111 234567777788888888999999999999999999999999999998554322111 1112234689
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++++||
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v 401 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEE
Confidence 99999999976555799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1304 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1304 pQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
||||++|+|||||||.++. ..+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+|+|
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred cCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998865 46889999999999999999999 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEE
Q 000503 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1428 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl 1428 (1459)
||||||+||++|++.+++.|++..+++|+|+||||+++++.||+|+||
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=683.34 Aligned_cols=538 Identities=21% Similarity=0.252 Sum_probs=444.4
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1459)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (1459)
.+++..++.+++.++...++.++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888999999999999999999999998764333344455566667777778888888888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000503 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1459)
Q Consensus 348 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~ 425 (1459)
.++...+...+|+|.++++...+++.++|++++.++ |++.+.+.... +..+...++-++ .+++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALL-NLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888899999999987 78888875432 233444444433 33333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1459)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1459)
+++++.+.+..++.+.+.+..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677788888899999999999999999999999999999999999998888877666666666555555444
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000503 506 FFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1459)
Q Consensus 506 ~~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1459)
.+...... .+.++++|+|.+.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 33333222 233456788888889999999999999999999999999999999999999999999999765422110
Q ss_pred hhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000503 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1459)
. ..+ ......++++|++|+|++++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|
T Consensus 442 ~--~~~----------~~~~~~I~~~nvsf~Y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 442 K--TDP----------GKLSGAIEVDRVTFRYRPDG----PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred c--CCC----------CCCCceEEEEEEEEEcCCCC----ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0 000 11234699999999997432 3459999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCC
Q 000503 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1459)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 730 (1459)
++|+|.++| .||||||+|++|+|||||||.++++.++++..++++.|+++++++.+|+|++|.+||+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 999999987 5999999999999999999999988899999999999999999999999999999999
Q ss_pred CcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
|.+||||||||++||||++++|+|++||||||+||+++++++.+. +.. . ++|+|+||||++.++.||+|++|++|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LER-L--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-h--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988 333 2 589999999999999999999999999
Q ss_pred EEEecCHHHHHhccccCc
Q 000503 811 VKWIGSSADLAVSLYSGF 828 (1459)
Q Consensus 811 i~~~g~~~~l~~~~~~~~ 828 (1459)
|++.|+++|+.++.+.+.
T Consensus 662 iv~~G~~~~Ll~~~~~y~ 679 (686)
T TIGR03797 662 VVQQGTYDELMAREGLFA 679 (686)
T ss_pred EEEECCHHHHHhCCcHHH
Confidence 999999999987655443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=685.71 Aligned_cols=543 Identities=20% Similarity=0.214 Sum_probs=446.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1459)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1459)
+..++.+++.++..++..++..++.++.|++++.++|.+..+......+.++++++++.++..++.....+...+++.++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888999999999999999999998765333333445566666677778888888888999999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000503 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1459)
Q Consensus 351 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~ 429 (1459)
...+...+|+|.++++...+.+.++|++++.++.| +.+.++.. .+..+....+.+++.+++++..-++.+++.++.++
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988889999999999888 56776543 44444544545444444444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1459)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1459)
+.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++.+.++.+...+......+...+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777888888889999999999999999999999999999999999999999888888877766665555443332
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000503 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1459)
Q Consensus 510 ~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1459)
... ..+.++++|+|.+.++.+|.|.+++++++++.+..|+..++..+..+.++..+++|+.++++.++..+.....
T Consensus 385 ~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~-- 462 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE-- 462 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc--
Confidence 222 2234567788888899999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeE
Q 000503 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1459)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 667 (1459)
.+. ............++++|++|+|+..+ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+
T Consensus 463 ~~~---~~~~~~~~~~~~I~~~~vsf~y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 463 APA---AGSEPSPRLSGYVELRNITFGYSPLE----PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccc---cccccCCCCCCeEEEEEEEEecCCCC----CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 000 00000011235799999999997532 34599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCCCHHHHhccCC-CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcc
Q 000503 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1459)
Q Consensus 668 i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 733 (1459)
|.++| .|+||||+|++|++||||||.++. +.+++++.++++.++++++++.+|+|++|.+||+|.+
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 99987 599999999999999999999875 5789999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEE
Q 000503 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813 (1459)
Q Consensus 734 LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~ 813 (1459)
|||||||||+||||++++|+|+|||||||+||+++++++++.+ .. .++|+|+||||++.++.||+|++|++|++++
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l-~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL-RR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-Hh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999984 32 4799999999999999999999999999999
Q ss_pred ecCHHHHHhccccC
Q 000503 814 IGSSADLAVSLYSG 827 (1459)
Q Consensus 814 ~g~~~~l~~~~~~~ 827 (1459)
.|+++|+.+..+.+
T Consensus 692 ~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 692 RGTHEELWAVGGAY 705 (710)
T ss_pred ecCHHHHHHcCCcH
Confidence 99999998765544
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-67 Score=678.32 Aligned_cols=535 Identities=21% Similarity=0.288 Sum_probs=445.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1459)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (1459)
.++..++.+++.+....++.++..++.++.|++++.++|.+....+....+.++++++++.++.+++.....+...+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888899999999999999999999987543333344445555666677778888888888999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000503 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 426 (1459)
Q Consensus 349 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~ 426 (1459)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.+.... +..+...++.++..+++++ .-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAI-IGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 999999999999999999887 677899999998 799999986542 3334444444444333333 33444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1459)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1459)
++++.+.+..++.+++.+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778889999999999999999999999999999999999999999999999888877777776666655443
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhh
Q 000503 507 FWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584 (1459)
Q Consensus 507 ~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 584 (1459)
+...... .+.++++|+|.+.++.+|+|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+....
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 453 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR 453 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 3333222 23456778888888999999999999999999999999999999999999999999999987543211000
Q ss_pred hcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000503 585 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1459)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 664 (1459)
... .......|+++|++|+|+.. + +++|+|+||+|++||.++|+|+||||||||+++|+|+++|+
T Consensus 454 ---~~~--------~~~~~~~I~~~~vsf~Y~~~-~---~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 454 ---FLH--------RPRLQGEIEFRNVSFAYPGQ-E---TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred ---CCC--------CCCccceEEEEEEEEEeCCC-C---ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000 01123569999999999643 1 34599999999999999999999999999999999999999
Q ss_pred CeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCC
Q 000503 665 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1459)
Q Consensus 665 ~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 730 (1459)
+|+|.++| .|+||+|+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+
T Consensus 519 ~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 519 EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 99999987 6999999999999999999999986 889999999999999999999999999999999
Q ss_pred CcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
|.+||||||||++||||++++|+|++||||||+||+++++.+.+. +.. ..+++|+|+||||++.++.||+|++|++|+
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999887 443 456899999999999999999999999999
Q ss_pred EEEecCHHHHHhc
Q 000503 811 VKWIGSSADLAVS 823 (1459)
Q Consensus 811 i~~~g~~~~l~~~ 823 (1459)
++++|+|+|+++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=672.64 Aligned_cols=535 Identities=19% Similarity=0.188 Sum_probs=424.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 353 (1459)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 353 (1459)
++.+++.++...++.++..++..+.|++++.++|.+..+.+.......++.++++.++..++.....+...+.+.++...
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888899999999999999999998864322222222233344445555566655666666777788888
Q ss_pred HHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000503 354 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 432 (1459)
Q Consensus 354 L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~ 432 (1459)
+...+|+|.++.+...+++.++|++.|.++.|++.+.+.. ..+..++...+.+++++++++..-...+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8899999999999988888899999999999999998754 345555555555554444433322222333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000503 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT- 511 (1459)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~- 511 (1459)
.+..++.++..+..++..+..++..+...|.++|+++||.|++|+.+.+++++..++-.+...+.....+.........
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888999999999999999999999999999999888777665544444333333322222221111
Q ss_pred -HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCC
Q 000503 512 -PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1459)
Q Consensus 512 -~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 590 (1459)
...+.++.+|.|.+.++.+|++.+++++.+...+..|+..++..+..+.++.++.+||.+|++.++..+.... ..+
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~- 472 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCC-
Confidence 1223455677888888999999999999999999999999999999999999999999999976543221000 000
Q ss_pred cccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEE
Q 000503 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1459)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 670 (1459)
.+....|+++|++|+|+.+++ +++|+|+||+|+|||.++||||||||||||+++|+|+++|++|+|.+
T Consensus 473 ---------~~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 473 ---------LNLEGLIEFQDVSFSYPNRPD---VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred ---------CCCCCeEEEEEEEEECCCCCC---CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 112356999999999975322 34699999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 671 ~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
+| +|+||||+|++|++||||||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 87 5999999999999999999999964 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecC
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1459)
|||||++||||++++|+|+|||||||+||+++++.+.+. . ..+++|+|+||||++.++.||+|++|++|+|+++|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~-~---~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-R---SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh-h---ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 999999999999999999999999999999999988872 1 346899999999999999999999999999999999
Q ss_pred HHHHHhccccC
Q 000503 817 SADLAVSLYSG 827 (1459)
Q Consensus 817 ~~~l~~~~~~~ 827 (1459)
|+|++++.+.+
T Consensus 697 ~~eL~~~~~~y 707 (711)
T TIGR00958 697 HKQLMEDQGCY 707 (711)
T ss_pred HHHHHhCCCch
Confidence 99998765543
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=670.81 Aligned_cols=536 Identities=21% Similarity=0.243 Sum_probs=435.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1459)
Q Consensus 272 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 351 (1459)
..++.+++.++...+..++..++.++.|++++.++|.+..+......+.++++++++.++..++.....+...+++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888889999999999999999999987543333333445555666677777888888888899999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000503 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-F-HDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1459)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~-~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~ 429 (1459)
..+...+|+|.++++...+++.++|++++.++ |.+.+.+.... + ..+...++.++..+++++.... .+++.+++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML-LFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence 99999999999999999988899999999998 99998875432 2 2233444444333333333322 2333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1459)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1459)
+.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+..........+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677788888999999999999999999999999999999999999988887766555555554444433332222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000503 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1459)
Q Consensus 510 ~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1459)
... ..+.++++|+|.+.++.+|+|.++++.++...+..|+..+...+..+.+++++++|+.++++.++..+.... .
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~--~ 464 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK--R 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc--c
Confidence 221 224456788899899999999999999999999999999999999999999999999999976543221100 0
Q ss_pred CCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeE
Q 000503 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1459)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 667 (1459)
.+ .......|+++|++|+|+.+ +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+
T Consensus 465 ~~---------~~~~~~~I~~~~vsf~y~~~-----~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 465 TE---------LNNLNGDIVINDVSYSYGYG-----SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred cC---------CCCCCCcEEEEEEEEEcCCC-----CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 00 01223579999999999632 24599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCCCHHHHhccCC--CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 668 i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
|.++| .|+||||+|++|++||||||.+|. ..++++..++++.++++++++.+|+|++|.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99987 599999999999999999999983 478889999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
+|||||||||+||||++++|+|+|||||||+||+++++++.+.+ .. . +++|+|+||||++.+..||+|++|++|+++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998874 43 3 679999999999999999999999999999
Q ss_pred EecCHHHHHhccccCc
Q 000503 813 WIGSSADLAVSLYSGF 828 (1459)
Q Consensus 813 ~~g~~~~l~~~~~~~~ 828 (1459)
+.|+++|+++..+.+.
T Consensus 688 ~~G~~~~L~~~~~~y~ 703 (708)
T TIGR01193 688 EQGSHDELLDRNGFYA 703 (708)
T ss_pred EECCHHHHHhcCCcHH
Confidence 9999999987655443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-68 Score=629.81 Aligned_cols=475 Identities=25% Similarity=0.375 Sum_probs=359.8
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC----CeEEEEcC--------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT----HGSIHASG-------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~----~G~i~~~~-------- 672 (1459)
.++++|.+..+.... .+ ..+++||||++.+||.++|||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~-~~-~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATDG-GR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecCC-cc-eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 578899998887652 22 35799999999999999999999999999999999999887 89998876
Q ss_pred ---------cEEEEcCCCC-CCCC--CHHHHhc----cCCCC-C---HHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 673 ---------SIAYVPQVPW-ILSG--TIRDNIL----FGKNY-D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 673 ---------~i~y~~Q~~~-l~~~--ti~~nI~----~g~~~-~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
.|||++|+|+ .+|. ||.+-|. ..... . .++..+.++..+|.+.... +....
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCc
Confidence 4999999997 4554 7777664 22222 1 2233445555555443322 45677
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i 811 (1459)
.|||||||||.||+||..+|++||+||||+|||+.+..+|++.+.......|.++|+|||++..+.+ ||+|+||.+|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999987332223457799999999999886 999999999999
Q ss_pred EEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHH
Q 000503 812 KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 891 (1459)
Q Consensus 812 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 891 (1459)
+|.|+.+++..+...-+
T Consensus 234 VE~G~~~~i~~~p~hpY--------------------------------------------------------------- 250 (539)
T COG1123 234 VETGPTEEILSNPQHPY--------------------------------------------------------------- 250 (539)
T ss_pred EEecCHHHHHhccCCcc---------------------------------------------------------------
Confidence 99999998864321000
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 892 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 971 (1459)
Q Consensus 892 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 971 (1459)
-+. + +.. .+...
T Consensus 251 -T~~----------L------------------l~a-----~p~~~---------------------------------- 262 (539)
T COG1123 251 -TRG----------L------------------LAA-----VPRLG---------------------------------- 262 (539)
T ss_pred -cHH----------H------------------Hhh-----CCCcc----------------------------------
Confidence 000 0 000 00000
Q ss_pred HHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000503 972 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1051 (1459)
Q Consensus 972 ~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~ 1051 (1459)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQL 1131 (1459)
Q Consensus 1052 ~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 1131 (1459)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCC
Q 000503 1132 LAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1211 (1459)
Q Consensus 1132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~ 1211 (1459)
..... ..+.+
T Consensus 263 -------------------~~~~~---------------------------------------------~~~~~------ 272 (539)
T COG1123 263 -------------------DEKII---------------------------------------------RLPRR------ 272 (539)
T ss_pred -------------------ccccc---------------------------------------------ccccc------
Confidence 00000 00000
Q ss_pred CCCCCCCCCccEEEEEEEEEecCC---------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEE
Q 000503 1212 SLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1459)
Q Consensus 1212 ~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1459)
.+. +....++++|++++|... ...+++||||++++||.+||||+||||||||.++|+|+.+|++|+|.
T Consensus 273 ~~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~ 349 (539)
T COG1123 273 GPL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349 (539)
T ss_pred ccc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 000 012248899999999741 24689999999999999999999999999999999999999999999
Q ss_pred ECCEe--CCCCChHHHhcccEEEeCCCcC--C-CccHHHhcC-cCCCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCC
Q 000503 1283 VDGLN--IINTPVRDLRGRFAVVPQSPFL--F-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESG 1355 (1459)
Q Consensus 1283 IDG~d--i~~i~~~~lR~~i~~VpQdp~l--f-~gTIReNLd-p~~~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G 1355 (1459)
++|.| .+.-+...+|+++-+|.|||+- - ..||+++|. |...+.... .+-.+..+.+.++..||.. ..+...
T Consensus 350 ~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred EeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99977 3333456688899999999973 2 359999984 322111100 1111122333344446666 356677
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCe
Q 000503 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1459)
Q Consensus 1356 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~ 1432 (1459)
..||||||||+||||||..+|++||+|||||+||+-+...|.+.|.+.-+ +.|.|+|||++..++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 78999999999999999999999999999999999999999999877543 7999999999999987 89999999999
Q ss_pred EEEecChhHHhccCCcHHHHHHHh
Q 000503 1433 LVEQGNPQTLLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1433 IvE~G~p~eLl~~~~~~f~~l~~~ 1456 (1459)
|||.|+.+++.+++...|.+..-+
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999999988888776544
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=652.49 Aligned_cols=524 Identities=19% Similarity=0.223 Sum_probs=405.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++........++.++...|.............+..+++++.++..++.+++.+.....+.+....++.++++++++.
T Consensus 13 ~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 92 (544)
T TIGR01842 13 LFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSA 92 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455555566666665553211111112233445555566667778888888888899999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhH-HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPF-ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr 1064 (1459)
|+.. .+...+++++|++.+.+.+.. .+..++..++.++. ++++.+.+|++.++++....++..+.....+..+
T Consensus 93 ~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~ 166 (544)
T TIGR01842 93 TLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATK 166 (544)
T ss_pred cccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9842 366789999999999876655 34444444443333 3445566666554433222222223333333333
Q ss_pred HHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000503 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM- 1143 (1459)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~- 1143 (1459)
...+...+..+...+++.|+++|+++||+|+.|+.+.+++.+..++..+..+.......+.......+..+...++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (544)
T TIGR01842 167 KPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566677889999999999999999999999999988888776665544444333333333222111111111
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccE
Q 000503 1144 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1223 (1459)
Q Consensus 1144 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1223 (1459)
.... ..+..++|.+..++.+...+..++..+...+.++.....+.+|+.++++.++|..... .. -+..+.|
T Consensus 247 ~~l~-----~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~---~~~~~~i 317 (544)
T TIGR01842 247 AYLA-----IDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PL---PEPEGHL 317 (544)
T ss_pred HHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CC---CCCCCeE
Confidence 1111 1245678888888999999999999999999999999999999999998766532111 11 1235689
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++.+.+|+++++|
T Consensus 318 ~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 318 SVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence 99999999976556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1304 PQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1304 pQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
||||++|++|+|||+.++++ .+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+|||
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999986654 7899999999999999999999 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhc
Q 000503 1381 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999998875 6899999999999999999999999999999999999976
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=703.13 Aligned_cols=556 Identities=19% Similarity=0.242 Sum_probs=429.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1459)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 976 (1459)
.+..+++.+++.++..++....++.+...++... .......+...+++++++..++.+++.+++.+.+.+...+++.
T Consensus 58 ~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~ 134 (1466)
T PTZ00265 58 HRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMN---LGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKL 134 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555554321 1112334455666677778888899999999999999999999
Q ss_pred HHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1459)
Q Consensus 977 ~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 1056 (1459)
.++++++++|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.++++++.++.+++.+.
T Consensus 135 ~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~ 214 (1466)
T PTZ00265 135 EFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG 214 (1466)
T ss_pred HHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888888888888888888888877665544444444444
Q ss_pred HHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136 (1459)
Q Consensus 1057 ~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1136 (1459)
..+.+..+...+......+...+.+.|+++|+++||+|+.|+.+.++|.+..+...+..+.......+......++..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 294 (1466)
T PTZ00265 215 VICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILAS 294 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555567788999999999999999999999999998888877776655444433222222222111
Q ss_pred HHHHHHHH-HHhhcCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCC
Q 000503 1137 ISFIATMA-VIGSRGN---LPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS 1212 (1459)
Q Consensus 1137 ~~~~~~~~-v~~~~~~---~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~ 1212 (1459)
..++..+. .....+. ...+..++|.+...+.+.+.....+..+...+..+..+..|.+|+.+.++.+++.....
T Consensus 295 ~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~-- 372 (1466)
T PTZ00265 295 YAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND-- 372 (1466)
T ss_pred HHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--
Confidence 11111111 0101110 00112344544434433333344455667778899999999999999998766532111
Q ss_pred CCCCCCCCccEEEEEEEEEecCCC-CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEE-CCEeCCC
Q 000503 1213 LSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DGLNIIN 1290 (1459)
Q Consensus 1213 ~~~~wp~~g~I~f~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~I-DG~di~~ 1290 (1459)
.....|..+.|+|+||+|+|+... .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|.+ ||.|+++
T Consensus 373 ~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~ 452 (1466)
T PTZ00265 373 DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKD 452 (1466)
T ss_pred CCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhh
Confidence 111123345799999999997532 46999999999999999999999999999999999999999999999 5799999
Q ss_pred CChHHHhcccEEEeCCCcCCCccHHHhcCcCC------------------------------------------------
Q 000503 1291 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH------------------------------------------------ 1322 (1459)
Q Consensus 1291 i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~------------------------------------------------ 1322 (1459)
++.+++|++|++|||+|.+|++||+|||.++.
T Consensus 453 ~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1466)
T PTZ00265 453 INLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSN 532 (1466)
T ss_pred CCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchh
Confidence 99999999999999999999999999997642
Q ss_pred ----------CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCH
Q 000503 1323 ----------MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390 (1459)
Q Consensus 1323 ----------~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~ 1390 (1459)
..+|++++++++.+++++++..+ |+||.++++|.+||||||||++|||||+++|+|||||||||+||+
T Consensus 533 ~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 533 ELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 23578999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCC-------------------------------------
Q 000503 1391 QTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHG------------------------------------- 1431 (1459)
Q Consensus 1391 ~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G------------------------------------- 1431 (1459)
++++.|++.|++.. +++|+|+||||+++++.||+|+||++|
T Consensus 613 ~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNN 692 (1466)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccc
Confidence 99999999999875 489999999999999999999999986
Q ss_pred ----------eEEEecChhHHhccCCcHHHHHHHhh
Q 000503 1432 ----------HLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1432 ----------~IvE~G~p~eLl~~~~~~f~~l~~~~ 1457 (1459)
+|+|+|+|+||+++++|.|+.|++.+
T Consensus 693 ~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 693 NNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999987788999999764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-68 Score=593.87 Aligned_cols=487 Identities=25% Similarity=0.391 Sum_probs=393.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHH-HHHHHH
Q 000503 962 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL-SYVQVF 1040 (1459)
Q Consensus 962 ~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~-~~~~~~ 1040 (1459)
++...+..+.+.+--+.|.++.+..+.|.-+..+|-+..-......-|+..+-..+.+.+-.++-+....+++ ....||
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 3445556666677778888899999999888777765444433333344333333433333333332222222 234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1041 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1459)
Q Consensus 1041 ~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1459)
++.+.+...++|.++...-..-.-..||.-..+.+..++.-.+++-+.+|+|.|+.|+++..+|.+.++.++++......
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 76666655555544433222222234455555666667778899999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000503 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200 (1459)
Q Consensus 1121 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~ 1200 (1459)
.-.|+++.-..+..........+... ....+..+.|.+...-.+..+++.+++.+-..+.++.++....|+..++.
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~----~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSAL----GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHH----HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 77777665444433222211111111 11235567888999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCC-CCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCc
Q 000503 1201 DVPQEELCGYQSLSPDWP-FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1459)
Q Consensus 1201 ~~~~e~~~~~~~~~~~wp-~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1279 (1459)
+.+.|.... ...++-|| ..|.|.|+||+|.|.+. .++|+|+||++++|+++||||++|+||||+..+|+|||++++|
T Consensus 241 ~~~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDA-PDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccC-CCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 887765322 22344574 46899999999999876 4699999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCC
Q 000503 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1356 (1459)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~ 1356 (1459)
.|.|||.||.++..+.+|+.||+||||.+||++|+..|+.++++ .+++|++.|++.+++.++++++ |+||.|||.|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999998875 5899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEe
Q 000503 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436 (1459)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~ 1436 (1459)
.||||||||+++||++|++|+||+||||||+||..||+.||..|++..+++|.++|||||+||.++|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhccCCcHHHHHHH
Q 000503 1437 GNPQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1437 G~p~eLl~~~~~~f~~l~~ 1455 (1459)
|+|+||+++ +|.|++||.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999997 789999986
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-65 Score=648.14 Aligned_cols=540 Identities=18% Similarity=0.199 Sum_probs=431.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1459)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1459)
...++.+++.++..++..++..++..+.|++++.+++.+..+........++.+++++.++..++.....+...+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777888899999999987654322222222333344455666666666667788889999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000503 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNL-ANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1459)
Q Consensus 351 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~-~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~ 429 (1459)
...+...+|+|.++++.....+.+.|++++.++.|++.+.+. ...+..++..++.+++.+.+++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999999874 3445556666666655555444433333343444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1459)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1459)
+.+.+..++.+++++..++.++..++..+...|.++|+++||.+|+|+.+.+++++.-++-.+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667788888888999999999999999999999999999999988888877665544544444444333322222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000503 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1459)
Q Consensus 510 ~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1459)
... ..+.++.++.|.+.++.++++.+.++++++..+..|+..+...+..+.+++.+++|+.++++.++..+...
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~---- 332 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK---- 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC----
Confidence 222 23344566777777889999999999999999999999999999999999999999999997654321100
Q ss_pred CCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeE
Q 000503 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1459)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 667 (1459)
.. .+.....++++|++|+|++. + +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 333 ~~---------~~~~~~~i~~~~vsf~y~~~-~---~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 333 RV---------IERAKGDIEFRNVTFTYPGK-E---VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred cC---------CCCCCCeEEEEEEEEecCCC-C---CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 00 01123469999999999643 1 24599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCCCHHHHhccCC--CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 668 i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
|.++| .|+||||+|.+|++||||||.+|+ ++++++++++++.++++++++.+|+|++|.+|++|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99987 589999999999999999999985 378999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
+||||||||++||||++++|+|++|||||||||+++++.+++. +.. +.+++|+|+||||++.++.||+|++|++|+++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999887 333 44679999999999999999999999999999
Q ss_pred EecCHHHHHhccccCcc
Q 000503 813 WIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 813 ~~g~~~~l~~~~~~~~~ 829 (1459)
+.|+++++++..+.+.+
T Consensus 558 e~g~~~~l~~~~~~y~~ 574 (582)
T PRK11176 558 ERGTHAELLAQNGVYAQ 574 (582)
T ss_pred EeCCHHHHHhCCChHHH
Confidence 99999999876654443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=644.36 Aligned_cols=535 Identities=20% Similarity=0.229 Sum_probs=439.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1459)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1459)
..+++.+++.++...++.++..++...+|++++.+++...........+.++++++++.++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888889999999999999999999986544332223333344455566667777777778888999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000503 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1459)
Q Consensus 351 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~ 429 (1459)
...+...+|+|.++.+.+...+.+.|++.+.++.|++++.+... .+..++...+.+++++.+++..-++.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999888888999999999999999987553 45555555555555544444433333444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1459)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1459)
+.+.+..++.++.++..++..+..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888888999999999999999999999999999999999999888888776666655555444444333322
Q ss_pred HHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000503 510 TTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1459)
Q Consensus 510 ~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1459)
.... .+.++.+|.+.+.++.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---- 321 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---- 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----
Confidence 2222 2345667778888899999999999999999999999999999999999999999999997654322100
Q ss_pred CCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeE
Q 000503 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1459)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 667 (1459)
.+. ......++++|++|+|++.+ +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+
T Consensus 322 ~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 322 RAI---------ERARGDVEFRNVTFRYPGRD----RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred CCC---------CCCCCeEEEEEEEEEcCCCC----CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 000 11234699999999997532 24599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCCCHHHHhccCC--CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 668 i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
|.++| .|+||||+|++|++||||||.++. +.++++..++++.|++++++..+|+|.+|.+|++|.
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 99987 499999999999999999999985 588999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
+||||||||++||||++++|+|++||||||+||+++++++.+. +.. ..+++|+|+|||+.+.++.||+|++|++|+++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999887 443 45689999999999999999999999999999
Q ss_pred EecCHHHHHhcc
Q 000503 813 WIGSSADLAVSL 824 (1459)
Q Consensus 813 ~~g~~~~l~~~~ 824 (1459)
+.|+++++.+..
T Consensus 547 ~~g~~~~l~~~~ 558 (571)
T TIGR02203 547 ERGTHNELLARN 558 (571)
T ss_pred eeCCHHHHHHcC
Confidence 999999997654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-66 Score=657.83 Aligned_cols=491 Identities=22% Similarity=0.309 Sum_probs=354.6
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|..... ..++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~--~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQ--KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred ceEEEeceEEEecCCCC--ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 46899999999863211 12469999999999999999999999999999999999999999987643
Q ss_pred ----------------cEEEEcCCC--CCCC-CCHHHHhccCC----CCCH----HHHHHHHHHhcchhhHhhccCCCcc
Q 000503 673 ----------------SIAYVPQVP--WILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMA 725 (1459)
Q Consensus 673 ----------------~i~y~~Q~~--~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t 725 (1459)
.||||+|+| -++. .||+|||.++. ..+. ++..++++..++... ..
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~ 160 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QT 160 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hh
Confidence 489999998 4554 59999998752 1222 234445555555210 11
Q ss_pred cccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhc-CCEE
Q 000503 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMV 803 (1459)
Q Consensus 726 ~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~-~d~i 803 (1459)
.......+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+. +.... ..|+|+|+|||+++.+.. ||+|
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 23456679999999999999999999999999999999999998888875 33311 237899999999999865 9999
Q ss_pred EEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhccc
Q 000503 804 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGR 883 (1459)
Q Consensus 804 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 883 (1459)
++|++|++++.|+++++..... +. . ..
T Consensus 240 ~vl~~G~i~~~g~~~~~~~~~~-------------~~-------------~---------------~~------------ 266 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIFHAPQ-------------HP-------------Y---------------TR------------ 266 (623)
T ss_pred EEeeCCeecccCCHHHhhcCCC-------------Ch-------------h---------------hh------------
Confidence 9999999999888776531100 00 0 00
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 884 VELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSF 963 (1459)
Q Consensus 884 v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ 963 (1459)
.++. ..+. +..+.
T Consensus 267 -------~l~~---------------------~~~~--~~~~~------------------------------------- 279 (623)
T PRK10261 267 -------ALLA---------------------AVPQ--LGAMK------------------------------------- 279 (623)
T ss_pred -------hhhh---------------------ccCc--ccccc-------------------------------------
Confidence 0000 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHH
Q 000503 964 AFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLL 1043 (1459)
Q Consensus 964 ~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1043 (1459)
|+ ..+
T Consensus 280 --------------------------------~~--------------~~~----------------------------- 284 (623)
T PRK10261 280 --------------------------------GL--------------DYP----------------------------- 284 (623)
T ss_pred --------------------------------cc--------------cCC-----------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1123 (1459)
Q Consensus 1044 ~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1459)
.+-|.. +
T Consensus 285 -----------------------------~~~~~~----~---------------------------------------- 291 (623)
T PRK10261 285 -----------------------------RRFPLI----S---------------------------------------- 291 (623)
T ss_pred -----------------------------cccccc----c----------------------------------------
Confidence 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000503 1124 WLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1203 (1459)
Q Consensus 1124 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~ 1203 (1459)
. .. ... ..+
T Consensus 292 ---------------------~-----~~-~~~--------------------------------------------~~~ 300 (623)
T PRK10261 292 ---------------------L-----EH-PAK--------------------------------------------QEP 300 (623)
T ss_pred ---------------------c-----cc-ccc--------------------------------------------cCc
Confidence 0 00 000 000
Q ss_pred ccccccCCCCCCCCCCCccEEEEEEEEEecCC---------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC
Q 000503 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1204 ~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~ 1274 (1459)
.+.. ...+ +....++++|++++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+.
T Consensus 301 ~~~~---~~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 301 PIEQ---DTVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred cccc---cccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 0000 0000 011259999999999621 135899999999999999999999999999999999999
Q ss_pred CCCCceEEECCEeCCCCChH---HHhcccEEEeCCCc--CCCc-cHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHh
Q 000503 1275 PICGGQILVDGLNIINTPVR---DLRGRFAVVPQSPF--LFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEA 1344 (1459)
Q Consensus 1275 ~~~~G~I~IDG~di~~i~~~---~lR~~i~~VpQdp~--lf~g-TIReNLdp~----~~~~d~ei~~aL~~~~l~~~i~~ 1344 (1459)
+|++|+|.+||.++...+.. .+|++++||||+|. +++. |+++|+... +....++. +....+.++.
T Consensus 375 ~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~L~~ 449 (623)
T PRK10261 375 ESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA-----AARVAWLLER 449 (623)
T ss_pred CCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH-----HHHHHHHHHH
Confidence 99999999999999877643 46788999999983 6654 999998531 11111111 1122344455
Q ss_pred CCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh
Q 000503 1345 VGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN 1421 (1459)
Q Consensus 1345 lGLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~ 1421 (1459)
+|++ .........||||||||++|||||+.+|+||||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+..
T Consensus 450 ~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~ 529 (623)
T PRK10261 450 VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVER 529 (623)
T ss_pred cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 5775 34556667899999999999999999999999999999999999999999998764 27899999999999976
Q ss_pred -cCEEEEEeCCeEEEecChhHHhccCCcHHH-HHHH
Q 000503 1422 -MDEILILDHGHLVEQGNPQTLLQDECSVFS-SFVR 1455 (1459)
Q Consensus 1422 -~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~-~l~~ 1455 (1459)
||||++|++|+|+|.|+++++..++...|. .++.
T Consensus 530 ~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 530 ISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred hCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 899999999999999999999877655454 3443
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=637.31 Aligned_cols=532 Identities=18% Similarity=0.218 Sum_probs=415.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD--GYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 349 (1459)
Q Consensus 272 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1459)
..++.+++.++...++.++..++..+.|+++..++|.+..+.+... ...+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777888899999999999999999997644222111 12223334455556667777777788889999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q 000503 350 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLL---YTQVKFAFVSGL 425 (1459)
Q Consensus 350 ~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~p~~i~i~~~lL---~~~lg~a~l~~~ 425 (1459)
+...+...+|+|.++.+...+.+.+.|+++|.++.|++.+.+.... +..+....+.+++++.++ .+.+++..+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~- 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMI- 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998888899999999999999999875443 333433333333332222 22333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000503 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC- 504 (1459)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~- 504 (1459)
+++.+.+..+..++..+..++..+..++..+...|.++|+++||.++.|+.+.+++.+..++..+...+........
T Consensus 175 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 175 --FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344555666677777777888888899999999999999999999999888877655444433332222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 000503 505 ---VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1459)
Q Consensus 505 ---~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 581 (1459)
..+......+..++ ++.+ +..+.++.+.+++++.++..+..|+..++..+..+.++..+.+||.++++.++.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 253 RPLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 11111111111122 2223 457789999999999999999999999999999999999999999999975432110
Q ss_pred hhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000503 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 661 (1459)
.. .. ......++++|++|+|+.+ . ++|+|+||++++||.++|+|+||||||||+++|+|++
T Consensus 331 ~~-----~~---------~~~~~~i~~~~v~f~y~~~--~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 331 ND-----DR---------PLQSGRIDIDNVSFAYRDD--N---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CC-----cc---------CCCCCeEEEEEEEEEeCCC--C---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 00 00 1123469999999999732 2 3599999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCccccc
Q 000503 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1459)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig 728 (1459)
+|++|+|.++| .|+||||+|++|++||||||.+|++.++++..++++.++++++++.+|+|++|.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99999999987 49999999999999999999999988999999999999999999999999999999
Q ss_pred CCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeC
Q 000503 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~ 808 (1459)
++|.+||||||||++||||++++|+|+|||||||+||++++++|.+. +.. ..+++|+|+||||++.++.||+|++|++
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAA-VREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999887 433 4467999999999999999999999999
Q ss_pred CeEEEecCHHHHHhccccCcc
Q 000503 809 GQVKWIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 809 G~i~~~g~~~~l~~~~~~~~~ 829 (1459)
|++++.|+++|+++..+.+..
T Consensus 550 G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CEEEEEcCHHHHHhCCCHHHH
Confidence 999999999999876655443
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=630.12 Aligned_cols=504 Identities=20% Similarity=0.182 Sum_probs=392.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1459)
Q Consensus 272 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 351 (1459)
.+.+.+++.++...++.++..++..+.|++++.++|.+.........+.+.++++++.++..++.....+...+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888899999999999999999876542221111111222223445566666666677788889999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Q 000503 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAI 427 (1459)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~l---L~~~lg~a~l~~~~v 427 (1459)
..+...+|+|.++++...+++.++|++++.++.|++++.+... .+..+....+.+++++.+ +.+.+++.++++++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~- 164 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL- 164 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence 9999999999999999999899999999999999999987654 344444444443333333 23333333333222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 428 TILLIPVN-KWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1459)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1459)
++.++. .+..+..++..++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+.....+....
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02868 165 --LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAA 242 (529)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 23334345566777888899999999999999999999999999999988776666665555555544433
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhh
Q 000503 507 FWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584 (1459)
Q Consensus 507 ~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 584 (1459)
+...... .+.++.+|.|.+.++.++++.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 322 (529)
T TIGR02868 243 AQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV 322 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence 3322222 23345677788888899999999999999999999999999999999999999999999976543211000
Q ss_pred hcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000503 585 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1459)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 664 (1459)
..+. ........++++|++|+|+++ + ++|+|+||++++||+++|+||||||||||+++|+|+++|+
T Consensus 323 --~~~~-------~~~~~~~~I~~~~vsf~Y~~~--~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 323 --PAAG-------ALGLGKPTLELRDLSFGYPGS--P---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred --CCCc-------ccCCCCceEEEEEEEEecCCC--C---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 0000 001123469999999999742 2 3599999999999999999999999999999999999999
Q ss_pred CeEEEEcC------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCC
Q 000503 665 HGSIHASG------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1459)
Q Consensus 665 ~G~i~~~~------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 731 (1459)
+|+|.++| .||||||+|++|++||||||.+|.+ .+++++.++++.|+++++++.+|+|++|.+||+|
T Consensus 389 ~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 389 QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred CcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 99999998 7999999999999999999999864 6889999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCc
Q 000503 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794 (1459)
Q Consensus 732 ~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~ 794 (1459)
.+||||||||++||||++++|+|++||||||+||+++++.|.+.+ .. ..+++|+|+||||+
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LA-ALSGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH-hcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999884 33 56789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=635.38 Aligned_cols=541 Identities=18% Similarity=0.216 Sum_probs=425.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1459)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (1459)
.++.+++.+++.+....++.++..++.++.|++++.++|.+-.+.+......+++.++++.++..++...+.+...+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888888999999999999999999974322222222223333444445555666667788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHH
Q 000503 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLA 426 (1459)
Q Consensus 349 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~-~lL~~~lg~a~l~~~~ 426 (1459)
++...+...+|+|.++.+.....+.+.|++.+.++.|++.+.+.. ..+..++...+.+++++ ++++....++.++. +
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~ 166 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL-L 166 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence 999999999999999999988888889999999999999998764 33444444444433333 23322222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1459)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1459)
.+++.+.+..++.+++++..+++++..++..+...|.++|+++||.+++|+.+.+++++..++..+...+......+...
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334456778888899999999999999999999999999999999998888888766555554444433333222
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhh
Q 000503 507 FWATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584 (1459)
Q Consensus 507 ~~~~~--~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 584 (1459)
+.... ...+.++.+|+|.+..+.+|++.++++..+...+..|+..++..+..+.+++.+++||.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 22111 2233455677888888899999999999999999999999999999999999999999999976532110000
Q ss_pred hcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000503 585 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1459)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 664 (1459)
. ...+ ......++++|++|+|+.+++ +++|+|+||+++|||.++|+|+||||||||+++|+|+++|+
T Consensus 327 ~-~~~~---------~~~~~~i~~~~v~f~y~~~~~---~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~ 393 (576)
T TIGR02204 327 P-KTLP---------VPLRGEIEFEQVNFAYPARPD---QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393 (576)
T ss_pred C-ccCC---------cCCCceEEEEEEEEECCCCCC---CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 0 0000 012346999999999975322 34599999999999999999999999999999999999999
Q ss_pred CeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCC
Q 000503 665 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1459)
Q Consensus 665 ~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 730 (1459)
+|+|.++| .|+||||+|++|++||||||.++.+ .++++..++++.+++.++++.+|+|++|.+|++
T Consensus 394 ~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred CCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 99999987 5999999999999999999999874 577889999999999999999999999999999
Q ss_pred CcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
|.+||||||||++||||++++|++++||||||+||+++++.+++. +.. ..+++|+|+|||+.+.++.+|+|++|++|+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LET-LMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999988876 443 456899999999999999999999999999
Q ss_pred EEEecCHHHHHhccc
Q 000503 811 VKWIGSSADLAVSLY 825 (1459)
Q Consensus 811 i~~~g~~~~l~~~~~ 825 (1459)
+++.|+++++.++.+
T Consensus 552 ~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 552 IVAQGTHAELIAKGG 566 (576)
T ss_pred EEeeecHHHHHHcCC
Confidence 999999999876543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-63 Score=641.65 Aligned_cols=541 Identities=19% Similarity=0.214 Sum_probs=439.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1459)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (1459)
.++..++.+++.+...++..++..++.++.|++++.++|.+-...+....+.++++++++.++..++.....+...+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788888899999999999999999999987543333344455566666777788888888889999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000503 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1459)
Q Consensus 349 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v 427 (1459)
++...+...+|+|.++++...+++.++|++++.+ .|++.+.++.. .+..+....+.+++.+.+++..-++.+++.+++
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 287 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGS 287 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 59999987643 333333222222222333333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1459)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1459)
+++...+..++.+++++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+..........+
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR01846 288 LVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQA 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677788888888899999999999999999999999999999999998887766666666555555444333
Q ss_pred HHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhh
Q 000503 508 WATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 585 (1459)
Q Consensus 508 ~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 585 (1459)
..... ..+.++++|+|.+.++.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. .
T Consensus 368 ~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~- 445 (694)
T TIGR01846 368 IELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-G- 445 (694)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-C-
Confidence 32222 2234567888888888999999999999999999999999999999999999999999999765432110 0
Q ss_pred cCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC
Q 000503 586 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1459)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~ 665 (1459)
... .+.....++++|++|+|+++. +++|+|+||++++|+.++|+|+||||||||+++|+|+++|++
T Consensus 446 --~~~--------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 446 --LAA--------LPELRGAITFENIRFRYAPDS----PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred --CCC--------CCCCCCeEEEEEEEEEcCCCC----ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 000 012235699999999997432 235999999999999999999999999999999999999999
Q ss_pred eEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCC-CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCC
Q 000503 666 GSIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1459)
Q Consensus 666 G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 731 (1459)
|+|.++| .|+||+|+|++|++||+|||.++. ..++++..++++.++++++++.+|+|.+|.+|++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 9999987 489999999999999999999976 46788999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeE
Q 000503 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1459)
Q Consensus 732 ~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i 811 (1459)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i 669 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999887 333 4568999999999999999999999999999
Q ss_pred EEecCHHHHHhccccCc
Q 000503 812 KWIGSSADLAVSLYSGF 828 (1459)
Q Consensus 812 ~~~g~~~~l~~~~~~~~ 828 (1459)
+++|+++++.+..+.+.
T Consensus 670 ~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 670 AESGRHEELLALQGLYA 686 (694)
T ss_pred EEeCCHHHHHHcCChHH
Confidence 99999999987655443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=641.28 Aligned_cols=455 Identities=26% Similarity=0.350 Sum_probs=344.9
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1459)
.++++|+++.|+... ...++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 478999999986321 112469999999999999999999999999999999999986 799998754
Q ss_pred ----------cEEEEcCCCC--CCC-CCHHHHhccCC----CCCH----HHHHHHHHHhcchhhHhhccCCCcccccCCC
Q 000503 673 ----------SIAYVPQVPW--ILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1459)
Q Consensus 673 ----------~i~y~~Q~~~--l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 731 (1459)
.++|++|+|. ++. .|+++|+.++. ..+. ++..++++.+++.+.. .......
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCC
Confidence 3899999985 443 59999986421 1222 3445566666664211 0123456
Q ss_pred cccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCC
Q 000503 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKG 809 (1459)
Q Consensus 732 ~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G 809 (1459)
.+|||||||||+||||++.+|+++||||||++||+...+++.+. +..... .++|+|+|||+++.+.. ||+|++|++|
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 69999999999999999999999999999999999999988875 332112 37899999999998875 9999999999
Q ss_pred eEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHH
Q 000503 810 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 889 (1459)
Q Consensus 810 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 889 (1459)
++++.|+++++..... . .
T Consensus 234 ~i~~~g~~~~~~~~~~--------------------------------------------------------~--~---- 251 (529)
T PRK15134 234 RCVEQNRAATLFSAPT--------------------------------------------------------H--P---- 251 (529)
T ss_pred EEEEeCCHHHHhhCCC--------------------------------------------------------C--H----
Confidence 9998877655421000 0 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 890 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969 (1459)
Q Consensus 890 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 969 (1459)
+.+
T Consensus 252 --~~~--------------------------------------------------------------------------- 254 (529)
T PRK15134 252 --YTQ--------------------------------------------------------------------------- 254 (529)
T ss_pred --HHH---------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHH
Q 000503 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049 (1459)
Q Consensus 970 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~ 1049 (1459)
T Consensus 255 -------------------------------------------------------------------------------- 254 (529)
T PRK15134 255 -------------------------------------------------------------------------------- 254 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1129 (1459)
Q Consensus 1050 ~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 1129 (1459)
++. . .
T Consensus 255 ---------------~~~--~--~-------------------------------------------------------- 259 (529)
T PRK15134 255 ---------------KLL--N--S-------------------------------------------------------- 259 (529)
T ss_pred ---------------HHH--H--h--------------------------------------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccc
Q 000503 1130 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209 (1459)
Q Consensus 1130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~ 1209 (1459)
. ... ++...
T Consensus 260 ---------------------~-~~~-----------------------------------------------~~~~~-- 268 (529)
T PRK15134 260 ---------------------E-PSG-----------------------------------------------DPVPL-- 268 (529)
T ss_pred ---------------------C-ccc-----------------------------------------------ccccc--
Confidence 0 000 00000
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecC---------CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCce
Q 000503 1210 YQSLSPDWPFQGLIEFQNVTMRYKP---------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1459)
Q Consensus 1210 ~~~~~~~wp~~g~I~f~nVs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~ 1280 (1459)
. ++ ....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+
T Consensus 269 -~-~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~ 341 (529)
T PRK15134 269 -P-EP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE 341 (529)
T ss_pred -C-CC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE
Confidence 0 00 0114899999999952 12469999999999999999999999999999999999985 8999
Q ss_pred EEECCEeCCCCChHH---HhcccEEEeCCC--cCCC-ccHHHhcCcCCC-----CChHHHHHHHHHhcHHHHHHhCCCc-
Q 000503 1281 ILVDGLNIINTPVRD---LRGRFAVVPQSP--FLFE-GSLRDNLDPFHM-----NDDLKIWSVLEKCHVKEEVEAVGLE- 1348 (1459)
Q Consensus 1281 I~IDG~di~~i~~~~---lR~~i~~VpQdp--~lf~-gTIReNLdp~~~-----~~d~ei~~aL~~~~l~~~i~~lGLd- 1348 (1459)
|.+||.++...+... +|++++||||+| .+|+ .|+++|+..... .+..+. +..+.+.++.+|++
T Consensus 342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDP 416 (529)
T ss_pred EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHcCCCH
Confidence 999999998776543 477899999998 3666 499999964210 111111 11233445555775
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEE
Q 000503 1349 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEI 1425 (1459)
Q Consensus 1349 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI 1425 (1459)
........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||
T Consensus 417 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 34566677899999999999999999999999999999999999999999998764 27899999999999876 8999
Q ss_pred EEEeCCeEEEecChhHHhccCC
Q 000503 1426 LILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1426 lVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
++|++|++++.|+++++++++.
T Consensus 497 ~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred EEEECCEEEEEcCHHHHhcCCC
Confidence 9999999999999999987654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=638.61 Aligned_cols=448 Identities=23% Similarity=0.315 Sum_probs=339.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC--CCeEEEEcC----------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG---------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~--~~G~i~~~~---------- 672 (1459)
.++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4789999998852 2359999999999999999999999999999999999986 899999865
Q ss_pred ----cEEEEcCCCCCCCC-CHHHHhccCCC------CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcH
Q 000503 673 ----SIAYVPQVPWILSG-TIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 ----~i~y~~Q~~~l~~~-ti~~nI~~g~~------~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 737 (1459)
.++|++|+|.++.. |++||+.++.. .+.+ +.+++++..++.. .......+||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 147 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLG 147 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHH
Confidence 38999999987764 99999988642 1222 2233333333321 123455789999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecC
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 738 QkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1459)
|||||+||||+..+|+++||||||++||+...+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI-IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999988875 33312357899999999999875 99999999999987664
Q ss_pred HHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhh
Q 000503 817 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 896 (1459)
Q Consensus 817 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 896 (1459)
.+++.. . . ... .+.
T Consensus 227 ~~~~~~-----------------------------------------------------~-~------~~~---~~~--- 240 (506)
T PRK13549 227 AAGMTE-----------------------------------------------------D-D------IIT---MMV--- 240 (506)
T ss_pred cccCCH-----------------------------------------------------H-H------HHH---Hhh---
Confidence 322100 0 0 000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1459)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 976 (1459)
.
T Consensus 241 ------------------------------~------------------------------------------------- 241 (506)
T PRK13549 241 ------------------------------G------------------------------------------------- 241 (506)
T ss_pred ------------------------------C-------------------------------------------------
Confidence 0
Q ss_pred HHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1459)
Q Consensus 977 ~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 1056 (1459)
T Consensus 242 -------------------------------------------------------------------------------- 241 (506)
T PRK13549 242 -------------------------------------------------------------------------------- 241 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136 (1459)
Q Consensus 1057 ~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1136 (1459)
+
T Consensus 242 -----------------~-------------------------------------------------------------- 242 (506)
T PRK13549 242 -----------------R-------------------------------------------------------------- 242 (506)
T ss_pred -----------------c--------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCC
Q 000503 1137 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1216 (1459)
Q Consensus 1137 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~ 1216 (1459)
. .. + . .+.+. ++
T Consensus 243 --------------~--~~---------------------------------------~---~--~~~~~------~~-- 254 (506)
T PRK13549 243 --------------E--LT---------------------------------------A---L--YPREP------HT-- 254 (506)
T ss_pred --------------C--cc---------------------------------------c---c--ccccc------cC--
Confidence 0 00 0 0 00000 00
Q ss_pred CCCCccEEEEEEEEEecC-CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-CCCceEEECCEeCCCCCh-
Q 000503 1217 WPFQGLIEFQNVTMRYKP-SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNIINTPV- 1293 (1459)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~-~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-~~~G~I~IDG~di~~i~~- 1293 (1459)
+....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+.
T Consensus 255 -~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 255 -IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred -CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 01124899999999953 23469999999999999999999999999999999999998 599999999999875543
Q ss_pred HHHhcccEEEeCCC---cCCC-ccHHHhcCcCC--CCCh-HHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHH
Q 000503 1294 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFH--MNDD-LKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp---~lf~-gTIReNLdp~~--~~~d-~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQr 1365 (1459)
+..|++++|+||+| .+|+ .|+.+|+.... .... ..+...-.+....+.++.+|++. ........||||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 45677899999997 3565 59999996421 1100 00000001122344555567753 4555667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. |||+++|++|+++..|+++++.
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999999999999999999999998753 48899999999999876 8999999999999999998874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=622.72 Aligned_cols=534 Identities=19% Similarity=0.214 Sum_probs=417.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSG---HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1459)
Q Consensus 273 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~---~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (1459)
+++.+++.++...++.++..++..+.|.+++.+++... .+.. .......+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999998642 2211 0111112333444556677777777788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH-H--HHHHhHHHHHHH
Q 000503 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY-L--LYTQVKFAFVSG 424 (1459)
Q Consensus 349 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~-l--L~~~lg~a~l~~ 424 (1459)
++...+...+|+|.++++....++.++|++++.++.|++.+..+.. .+..+....+.++++++ + +.+.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999999999999999998654 34445544444433332 2 233333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1459)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1459)
+ .++...+..++.++.++..++..+..++..+.+.|.++|+++||.||.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 L--LLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred H--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222233556677778888889999999999999999999999999999999888887655555544444444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 000503 505 VFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSL-ISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1459)
Q Consensus 505 ~~~~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l-~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 581 (1459)
..+..... ..+.++.+|.+. .++.++++.+++++.+..++ ..|+..++..+..+.++.++.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22222211 223345566666 46779999988877765444 468888999999999999999999999976532110
Q ss_pred hhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000503 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 661 (1459)
... .+. ......++++|++|+|++++ +++|+|+||++++|+.++|+||||||||||+++|+|++
T Consensus 327 ~~~---~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 327 PTT---STA---------AADQVSLTLNNVSFTYPDQP----QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred Ccc---cCC---------CCCCCeEEEEEEEEECCCCC----CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 000 000 11234699999999996431 24599999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccc
Q 000503 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 727 (1459)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~i 727 (1459)
+|++|+|.++| .|+||+|+|++|++||+|||.++.+ .++++..++++.++++++++. |+|++|.+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 99999999987 4999999999999999999999874 688899999999999999999 99999999
Q ss_pred cCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEe
Q 000503 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 807 (1459)
Q Consensus 728 g~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~ 807 (1459)
||+|.+||||||||++||||++++|++++||||||+||+++++.+.+. +.. ..+++|+|+||||++.++.||+|++|+
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~-~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAE-HAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999887 433 456899999999999999999999999
Q ss_pred CCeEEEecCHHHHHhccccCc
Q 000503 808 KGQVKWIGSSADLAVSLYSGF 828 (1459)
Q Consensus 808 ~G~i~~~g~~~~l~~~~~~~~ 828 (1459)
+|++++.|+++|++++++.+.
T Consensus 548 ~G~i~~~g~~~~l~~~~g~y~ 568 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQGRYY 568 (574)
T ss_pred CCeEEEeCCHHHHHhcCcHHH
Confidence 999999999999987765543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=620.58 Aligned_cols=520 Identities=19% Similarity=0.224 Sum_probs=416.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 355 (1459)
Q Consensus 276 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~ 355 (1459)
.+++.++..+++.++..++..+.|++++.++|.+....+....+.+++.++++.++.+++.....+...+.+.++...+.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888889999999999999999999764322223334455566666777888888888889999999999999
Q ss_pred HHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHH
Q 000503 356 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVA--LYLLYTQVKFAFVSGLAITILL 431 (1459)
Q Consensus 356 ~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~--~~lL~~~lg~a~l~~~~v~~~~ 431 (1459)
..+|+|.++++... .+...+..+.|++++.+.... +..+...++.++.. ++.+.+.+++.++++++ +.
T Consensus 83 ~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~---l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAV---VL 154 (544)
T ss_pred HHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HH
Confidence 99999999998732 245667788999999876542 33444444443332 33333344443333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 432 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511 (1459)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 511 (1459)
+.+..+..++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788889999999999999999999999999999999999988877666665555444444333322222
Q ss_pred H--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCC
Q 000503 512 P--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSP 589 (1459)
Q Consensus 512 ~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~ 589 (1459)
. ..+.++++|.|.+.++.+|+|.+++++.++..+..|+..+...+..+.+++.+.+||.++++.++..+.. .+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-----~~ 309 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-----CC
Confidence 1 2234566888888889999999999999999999999999999999999999999999999754422110 00
Q ss_pred CcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEE
Q 000503 590 SYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1459)
Q Consensus 590 ~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~ 669 (1459)
. +..+..++++|++|+|+..+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.
T Consensus 310 ~---------~~~~~~i~~~~v~~~y~~~~----~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 310 L---------PEPEGHLSVENVTIVPPGGK----KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred C---------CCCCCeEEEEEEEEEcCCCC----ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 0 11234699999999996421 2459999999999999999999999999999999999999999999
Q ss_pred EcC-------------cEEEEcCCCCCCCCCHHHHhccCC-CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccC
Q 000503 670 ASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1459)
Q Consensus 670 ~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 735 (1459)
++| .++||||+|++|++|++|||.++. +.+++++.++++.+++++.++.+|+|++|.+|++|.+||
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 986 599999999999999999998655 478889999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEec
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g 815 (1459)
||||||++||||++++|+++|||||||+||+++++.+.+. +.....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 9999999999999999999999999999999999998886 333123578999999999999899999999999999999
Q ss_pred CHHHHHh
Q 000503 816 SSADLAV 822 (1459)
Q Consensus 816 ~~~~l~~ 822 (1459)
+++++.+
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=625.33 Aligned_cols=533 Identities=19% Similarity=0.215 Sum_probs=413.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1459)
Q Consensus 273 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~ 352 (1459)
.++.++..+...++..++..++.++.|+++..++|.+..+.. .+ .+++.++++.++..+......+...+...+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--IF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888899999999999999999998764321 11 112222222333333344445566778888888
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHH
Q 000503 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVAL---YLLYTQVKFAFVSGLAIT 428 (1459)
Q Consensus 353 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~---~lL~~~lg~a~l~~~~v~ 428 (1459)
.+...+|+|.++++.....+.+.|++++.++.|++.+.... ..+..+....+..++.+ +.+.+.+++.++ +++
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l---~~~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLV---VLG 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 89999999999999988888999999999999999987543 23333333333222222 223333333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1459)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1459)
++...+..++.++..+.+++.++..++..+...|.++|+++||.++.|+.+.+++.+.-++..+...+..........+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566778888888889999999999999999999999999999998877776654443333333222222222211
Q ss_pred H--HHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000503 509 A--TTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1459)
Q Consensus 509 ~--~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1459)
. .....+.++++|+|.+.++.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-- 324 (588)
T PRK13657 247 RAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-- 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC--
Confidence 1 112234556778888888999999999999999999999999999999999999999999999875432111000
Q ss_pred CCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000503 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1459)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1459)
... .......++++|++|+|+.+ . ++|+|+||+++||++++|+|+||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~I~~~~vsf~y~~~--~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 325 -AID--------LGRVKGAVEFDDVSFSYDNS--R---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred -CCC--------cCCCCCeEEEEEEEEEeCCC--C---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 000 01123469999999999632 2 359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCC-CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
+|.++| .|+||||+|++|++||||||.+++ +.++++..++++.+++++.+..+|+|.+|.+|++|.
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 999987 699999999999999999999986 467888999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
+||||||||++||||++++|+|++||||||+||+++++.+++.+ .. ..+++|+|+||||++.++.||+|++|++|++.
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998873 33 44679999999999999999999999999999
Q ss_pred EecCHHHHHhccccCcc
Q 000503 813 WIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 813 ~~g~~~~l~~~~~~~~~ 829 (1459)
+.|+++++++..+.+.+
T Consensus 549 ~~g~~~~l~~~~~~y~~ 565 (588)
T PRK13657 549 ESGSFDELVARGGRFAA 565 (588)
T ss_pred EeCCHHHHHHCCChHHH
Confidence 99999999866544433
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=621.25 Aligned_cols=522 Identities=20% Similarity=0.237 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000503 288 KVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVR 366 (1459)
Q Consensus 288 ~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~ 366 (1459)
.++..++..+.|++++.++|.+.... .....+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556777889999999999875422 22223334444555566667777666777788899999999999999999999
Q ss_pred ccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 367 LAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKF-AFVSGLAITILLIPVNKWIANLIAN 444 (1459)
Q Consensus 367 ~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~lL~~~lg~-a~l~~~~v~~~~~~~~~~~~~~~~~ 444 (1459)
...+.+.++|++++.+++|++.+.... ..+..++..++.+++++++++..++| .+++.++++++...+..++.+++.+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999998654 34555666555544444333223333 2233333333444455667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000503 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP--TLFSLFTFGL 522 (1459)
Q Consensus 445 ~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~ 522 (1459)
..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+..... ..+.++.+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999998888777654444443333333333222221111 2233456778
Q ss_pred HHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcccCCC
Q 000503 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSK 602 (1459)
Q Consensus 523 ~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1459)
|.+.++.+|+|.+++++.+...+..|+..+++.+..+.+++++.+||.++++.++..+... .+. +..
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~----~~~---------~~~ 310 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS----EPV---------PEG 310 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CCC---------CCC
Confidence 8888899999999999999999999999999999999999999999999997643211000 000 112
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1459)
...++++|++|+|+..+ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~I~~~~v~~~y~~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 311 RGELDVNIRQFTYPQTD----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred CCcEEEEEEEEECCCCC----CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH
Confidence 34689999999997431 2459999999999999999999999999999999999999999999976
Q ss_pred ---cEEEEcCCCCCCCCCHHHHhccCC-CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHH
Q 000503 673 ---SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARal 748 (1459)
.++||+|+|++|++|++|||.++. +.+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 387 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 489999999999999999999985 4788899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhccccCc
Q 000503 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828 (1459)
Q Consensus 749 y~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 828 (1459)
+++|+++|||||||+||+++++++.+. +.. ..+++|+|++||+++.++.||+|++|++|++++.|+++++.++.+.+.
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~-l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~ 544 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHN-LRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYR 544 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHH
Confidence 999999999999999999999999887 433 456899999999999999999999999999999999999987655443
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=621.30 Aligned_cols=511 Identities=16% Similarity=0.153 Sum_probs=383.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000503 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1459)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1459)
++.++...+....++.++.+.+.... ... ..+..++++.++..++.++..+.....+.+...++|.++++++++.
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~ 99 (555)
T TIGR01194 25 ALGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGA 99 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444445555566666666543110 000 1122233445555667777788888899999999999999999999
Q ss_pred ccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1459)
Q Consensus 986 p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~ 1065 (1459)
|+.+|++.++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.+.++++..+.+...+..+..+..++
T Consensus 100 ~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~ 178 (555)
T TIGR01194 100 PIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFK 178 (555)
T ss_pred CHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987753 5566666666667777777777776655443333333333322222233
Q ss_pred HHHHHHhhhchhHhHHHhhhccHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSED--YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1143 (1459)
Q Consensus 1066 l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1143 (1459)
..+......+.+.+.+.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+ .
T Consensus 179 ~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 255 (555)
T TIGR01194 179 FFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGC---A 255 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 333334455678899999999999999999954 55667777666666555433222222111112221111111 1
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cc---cC-CCC--CCC
Q 000503 1144 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE-LC---GY-QSL--SPD 1216 (1459)
Q Consensus 1144 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~-~~---~~-~~~--~~~ 1216 (1459)
.+++. . .+..+.|.+...+.++..+..++..+...+.+++....+.+|+.++.+.+.++ .. .. ... .+.
T Consensus 256 ~~~~~--~--~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 331 (555)
T TIGR01194 256 LFAAA--M--FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAH 331 (555)
T ss_pred HHHHH--H--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 11111 0 12346788888888888999999999999999999999999999997642221 10 00 000 011
Q ss_pred CCCCccEEEEEEEEEecCC---CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh
Q 000503 1217 WPFQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293 (1459)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1293 (1459)
....+.|+|+||+|+|++. .+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR 411 (555)
T ss_pred CCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 1234689999999999753 2369999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
+++|+++++|||||++|++|+|+|+.+ ..++++++++++.++++++++.+ |+||. .+||||||||++||||
T Consensus 412 ~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRa 484 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICA 484 (555)
T ss_pred HHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHH
Confidence 999999999999999999999999743 45788999999999999999988 99984 5899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHH-h-cCCcEEEEeccChhhHhhcCEEEEEeCCeEEEe
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISS-E-CKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~-~-~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~ 1436 (1459)
++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 485 ll~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 485 WLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999887643 3 468999999999999999999999999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-65 Score=637.62 Aligned_cols=436 Identities=22% Similarity=0.360 Sum_probs=335.4
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc--cCCCeEEEEc-------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--MLTHGSIHAS------------- 671 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~--~~~~G~i~~~------------- 671 (1459)
+++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|.. +|++|+|.++
T Consensus 2 ~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 2 EVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred EEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccc
Confidence 57888888742 23599999999999999999999999999999999996 7999999875
Q ss_pred ----------C-----------------------cEEEEcCC-CCCCC-CCHHHHhccCC---CCCH----HHHHHHHHH
Q 000503 672 ----------G-----------------------SIAYVPQV-PWILS-GTIRDNILFGK---NYDP----QSYSETLKA 709 (1459)
Q Consensus 672 ----------~-----------------------~i~y~~Q~-~~l~~-~ti~~nI~~g~---~~~~----~~~~~v~~~ 709 (1459)
| .++|++|+ +.+++ .|++||+.++. .++. ++..++++.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEM 155 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 28999997 56665 59999998742 1222 344556666
Q ss_pred hcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEE
Q 000503 710 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRI 788 (1459)
Q Consensus 710 ~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i 788 (1459)
++++... .....+|||||||||+||||+..+|+++||||||++||+.+.+++.+. +..... .++|+|
T Consensus 156 ~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi 223 (520)
T TIGR03269 156 VQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-LEEAVKASGISMV 223 (520)
T ss_pred cCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEE
Confidence 6664332 234568999999999999999999999999999999999999998775 332112 378999
Q ss_pred EEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCC
Q 000503 789 LCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVS 867 (1459)
Q Consensus 789 ~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1459)
+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 224 ivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-------------------------------------------- 259 (520)
T TIGR03269 224 LTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV-------------------------------------------- 259 (520)
T ss_pred EEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH--------------------------------------------
Confidence 99999999875 999999999998765543321000
Q ss_pred cchhhhhHHHHHhcccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHH
Q 000503 868 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCI 947 (1459)
Q Consensus 868 ~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~ 947 (1459)
|. .
T Consensus 260 ------------------------~~---------------------------------~-------------------- 262 (520)
T TIGR03269 260 ------------------------FM---------------------------------E-------------------- 262 (520)
T ss_pred ------------------------HH---------------------------------h--------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhH
Q 000503 948 FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGL 1027 (1459)
Q Consensus 948 l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~ 1027 (1459)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHH
Q 000503 1028 LGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107 (1459)
Q Consensus 1028 l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~ 1107 (1459)
...
T Consensus 263 -------------------------------------~~~---------------------------------------- 265 (520)
T TIGR03269 263 -------------------------------------GVS---------------------------------------- 265 (520)
T ss_pred -------------------------------------hch----------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1108 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETE 1187 (1459)
Q Consensus 1108 ~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e 1187 (1459)
. .+
T Consensus 266 -------------------------------------------~----------------------------------~~ 268 (520)
T TIGR03269 266 -------------------------------------------E----------------------------------VE 268 (520)
T ss_pred -------------------------------------------h----------------------------------hc
Confidence 0 00
Q ss_pred HHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecC---CCCccceeeeEEEeCCcEEEEECCCCCcHH
Q 000503 1188 KEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKS 1264 (1459)
Q Consensus 1188 ~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~---~~~~vL~~isl~I~~GekvgIvGrtGSGKS 1264 (1459)
. .++. +. ....++++|++++|+. +..++|+|+||+|++||++||+|+||||||
T Consensus 269 ~-------------~~~~-------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKS 324 (520)
T TIGR03269 269 K-------------ECEV-------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKT 324 (520)
T ss_pred c-------------cccc-------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHH
Confidence 0 0000 00 0124999999999953 234699999999999999999999999999
Q ss_pred HHHHHHhccCCCCCceEEEC-CE---eCCCCC---hHHHhcccEEEeCCCcCCCc-cHHHhcCcC-C-CCChHHHHHHHH
Q 000503 1265 SILNALFRLTPICGGQILVD-GL---NIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLDPF-H-MNDDLKIWSVLE 1334 (1459)
Q Consensus 1265 TLl~~L~rl~~~~~G~I~ID-G~---di~~i~---~~~lR~~i~~VpQdp~lf~g-TIReNLdp~-~-~~~d~ei~~aL~ 1334 (1459)
||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|+. |+++|+... . ....++ .
T Consensus 325 TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~-----~ 399 (520)
T TIGR03269 325 TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL-----A 399 (520)
T ss_pred HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHH-----H
Confidence 99999999999999999996 64 344332 23567789999999988875 999999632 1 111111 1
Q ss_pred HhcHHHHHHhCCCch-----hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCc
Q 000503 1335 KCHVKEEVEAVGLET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGM 1407 (1459)
Q Consensus 1335 ~~~l~~~i~~lGLdt-----~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~ 1407 (1459)
+....+.++.+|++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.
T Consensus 400 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 479 (520)
T TIGR03269 400 RMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ 479 (520)
T ss_pred HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 112234445556643 3455566899999999999999999999999999999999999999999998764 278
Q ss_pred EEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1408 TVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1408 TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 480 tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 480 TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999876 89999999999999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=633.74 Aligned_cols=446 Identities=21% Similarity=0.329 Sum_probs=337.4
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 5 YISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred eEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 4789999998852 2359999999999999999999999999999999999999999999875
Q ss_pred --cEEEEcCCCCCCCC-CHHHHhccCCC-----C-----CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccC
Q 000503 673 --SIAYVPQVPWILSG-TIRDNILFGKN-----Y-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~-ti~~nI~~g~~-----~-----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 735 (1459)
.++|++|++.++.. |++||+.++.. + +. ++..++++.+++... ......+||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS 147 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLS 147 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCC
Confidence 38999999987765 99999987531 0 11 123334444444321 234556899
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999988876 33212347899999999999875 999999999999877
Q ss_pred cCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHh
Q 000503 815 GSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 894 (1459)
Q Consensus 815 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 894 (1459)
|+++++... +.. ....+
T Consensus 227 g~~~~~~~~------------------------------------------------~~~---~~~~~------------ 243 (510)
T PRK09700 227 GMVSDVSND------------------------------------------------DIV---RLMVG------------ 243 (510)
T ss_pred cchhhCCHH------------------------------------------------HHH---HHhcC------------
Confidence 764432100 000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 895 FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974 (1459)
Q Consensus 895 ~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 974 (1459)
.
T Consensus 244 ------------------------------------~------------------------------------------- 244 (510)
T PRK09700 244 ------------------------------------R------------------------------------------- 244 (510)
T ss_pred ------------------------------------C-------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000503 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1054 (1459)
Q Consensus 975 h~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~ 1054 (1459)
+
T Consensus 245 -----------~-------------------------------------------------------------------- 245 (510)
T PRK09700 245 -----------E-------------------------------------------------------------------- 245 (510)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1134 (1459)
Q Consensus 1055 ~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 1134 (1459)
.. .
T Consensus 246 -----------~~-----~------------------------------------------------------------- 248 (510)
T PRK09700 246 -----------LQ-----N------------------------------------------------------------- 248 (510)
T ss_pred -----------cc-----c-------------------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCC
Q 000503 1135 FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1214 (1459)
Q Consensus 1135 ~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~ 1214 (1459)
.. .. ..+.. .++
T Consensus 249 ----------------~~-~~----------------------------------------------~~~~~-----~~~ 260 (510)
T PRK09700 249 ----------------RF-NA----------------------------------------------MKENV-----SNL 260 (510)
T ss_pred ----------------cc-cc----------------------------------------------ccccc-----ccC
Confidence 00 00 00000 000
Q ss_pred CCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-
Q 000503 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1293 (1459)
Q Consensus 1215 ~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~- 1293 (1459)
+.+..++++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 261 ---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 261 ---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333 (510)
T ss_pred ---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHH
Confidence 0112599999998763 38999999999999999999999999999999999999999999999999876543
Q ss_pred HHHhcccEEEeCCC---cCCCc-cHHHhcCcCCCCChH------HH-HHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChh
Q 000503 1294 RDLRGRFAVVPQSP---FLFEG-SLRDNLDPFHMNDDL------KI-WSVLEKCHVKEEVEAVGLE-TFVKESGISFSVG 1361 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp---~lf~g-TIReNLdp~~~~~d~------ei-~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgG 1361 (1459)
..+|++++|+||++ .+|++ |+++|+......... .. ...-++....+.++.+|+. .........||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 45678999999984 57765 999998753210000 00 0000112234455556775 3456666789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1362 QrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
||||++|||||+++|+||||||||++||..+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999998753 48899999999998865 899999999999998877
Q ss_pred hH
Q 000503 1440 QT 1441 (1459)
Q Consensus 1440 ~e 1441 (1459)
.+
T Consensus 494 ~~ 495 (510)
T PRK09700 494 RD 495 (510)
T ss_pred cc
Confidence 33
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=674.73 Aligned_cols=248 Identities=22% Similarity=0.284 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHhhh--cCCccccccCCCCCCCCCCCc--cEEEEEEEEEec--CCCCccceeeeEEEeCCcEEEEEC
Q 000503 1184 TETEKEMVSLERVLEYM--DVPQEELCGYQSLSPDWPFQG--LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVG 1257 (1459)
Q Consensus 1184 ~~~e~~~~s~~Ri~~~~--~~~~e~~~~~~~~~~~wp~~g--~I~f~nVs~~Y~--~~~~~vL~~isl~I~~GekvgIvG 1257 (1459)
.+.|..+.++||..++. +.+.|.......... .+.+| .++++||+++|+ ++.+++|+|||++|+|||++||+|
T Consensus 718 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G 796 (1394)
T TIGR00956 718 ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDM-EKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMG 796 (1394)
T ss_pred cccccccccccccccCCCCccccccccccccccc-cccCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEEC
Confidence 45566677888888763 233332111111000 01134 478999999995 334579999999999999999999
Q ss_pred CCCCcHHHHHHHHhccCC---CCCceEEECCEeCCCCChHHHhcccEEEeCCCcC-CCccHHHhcCcCC------CCChH
Q 000503 1258 RTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFH------MNDDL 1327 (1459)
Q Consensus 1258 rtGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l-f~gTIReNLdp~~------~~~d~ 1327 (1459)
|||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++.+ +..|+||||++.. ..+++
T Consensus 797 ~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~ 872 (1394)
T TIGR00956 797 ASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKS 872 (1394)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHH
Confidence 999999999999999998 78899999999985 2578999999998765 4569999997421 22333
Q ss_pred H----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC-EEEEeccCcCCCHHHHHHHHHHHHH
Q 000503 1328 K----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK-VLCLDECTANVDAQTASILQNAISS 1402 (1459)
Q Consensus 1328 e----i~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~-ILlLDEaTS~lD~~te~~I~~~I~~ 1402 (1459)
+ +.++++..++.+ -.|+.+++.|.+||||||||++|||||+.+|+ ||+||||||+||..+...+++.|++
T Consensus 873 ~~~~~v~~~l~~l~L~~-----~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 873 EKMEYVEEVIKLLEMES-----YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred HHHHHHHHHHHHcCChh-----hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 3 344455544433 25788888888999999999999999999997 9999999999999999999999988
Q ss_pred h-cCCcEEEEeccChhhH--hhcCEEEEEeCC-eEEEecChhH
Q 000503 1403 E-CKGMTVITIAHRISTV--LNMDEILILDHG-HLVEQGNPQT 1441 (1459)
Q Consensus 1403 ~-~~~~TvI~IaHrl~ti--~~~DrIlVl~~G-~IvE~G~p~e 1441 (1459)
. .+++|||+++|+++.. ..||+|++|++| +++++|++.+
T Consensus 948 la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 948 LADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 7 4689999999999974 568999999997 9999999854
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=565.70 Aligned_cols=530 Identities=20% Similarity=0.271 Sum_probs=448.7
Q ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 267 PSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 346 (1459)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 346 (1459)
.....+.+..++..++..+++..+.+++.+..|+++-++.|.+-.+.+.....++.+....+|+++.+++..+.+...|+
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999999999998877777788888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000503 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-----SFHDAWSLPFQIGVALYLLYTQVKFAF 421 (1459)
Q Consensus 347 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-----~~~~~~~~p~~i~i~~~lL~~~lg~a~ 421 (1459)
+.++...|...||.-+++.+..........+.+ .|.+.+..+.. .+.+..+.|+.+++ +|+++..+|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999976655433222222332 36666666543 57788889998887 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 422 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501 (1459)
Q Consensus 422 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~ 501 (1459)
++|.++++.+..+|-++++ +..++-.+..-+|.......++|..+|+.+|+.+...+++.+.....++...+.....
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999888888877776665 5567778888899999999999999999999999999999988877776655544433
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 000503 502 AWCVFFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579 (1459)
Q Consensus 502 ~~~~~~~~~~~~~--~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 579 (1459)
.....+.-..-.+ ..++..|+|++.++++|+|.++++-.+......|+......+.++..|+.|++|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3332222222222 34567888999999999999999999999999999999999999999999999999999643221
Q ss_pred hhhhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 000503 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1459)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g 659 (1459)
++.. ..+.++..+.++++++.-|.. .+++++|+||++++|+-++||||||||||||.++|.|
T Consensus 323 ~~~m--------------~LP~P~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 323 AERM--------------PLPAPQGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCC--------------CCCCCCceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 1110 112355678899999865432 2456999999999999999999999999999999999
Q ss_pred CccCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhc-cCCCCCHHHHHHHHHHhcchhhHhhccCCCcc
Q 000503 660 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725 (1459)
Q Consensus 660 ~~~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~-~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t 725 (1459)
..+|.+|+|++|| +|||.||+..||.|||+|||. |+.+.|+++.-++.++.+.++-|..+|+||+|
T Consensus 385 ~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred ccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 9999999999987 699999999999999999995 88889999999999999999999999999999
Q ss_pred cccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEE
Q 000503 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805 (1459)
Q Consensus 726 ~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~ 805 (1459)
.||+.|.+|||||||||+||||+|.+|.+++||||.|+||.+-+..+.+. +.....+|.|+|+||||++.+..+|+|++
T Consensus 465 ~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A-i~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA-ILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH-HHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999988877765 55546788999999999999999999999
Q ss_pred EeCCeEEEecCHHHHHhc
Q 000503 806 MDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 806 l~~G~i~~~g~~~~l~~~ 823 (1459)
|++|++...|+.+|+.++
T Consensus 544 l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 544 LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCChHHhcCCHHHHHHH
Confidence 999999999999998765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=632.26 Aligned_cols=436 Identities=21% Similarity=0.315 Sum_probs=335.7
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 4788999998852 2359999999999999999999999999999999999999999999875
Q ss_pred --cEEEEcCCCCCCCC-CHHHHhccCCC-------CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 --SIAYVPQVPWILSG-TIRDNILFGKN-------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~-ti~~nI~~g~~-------~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.++|++|++.++.. |++||+.++.. ++.+ +..++++.+++... ......+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~ 146 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGE 146 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHH
Confidence 38999999987754 99999998642 1222 23344444444321 234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCH
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1459)
||||+||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+.
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999988765 32212347899999999999865 999999999999876543
Q ss_pred HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhh
Q 000503 818 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1459)
Q Consensus 818 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1459)
+++.. ++ .
T Consensus 226 ~~~~~-----------------------------------------------------~~--------~----------- 233 (501)
T PRK10762 226 ADLTE-----------------------------------------------------DS--------L----------- 233 (501)
T ss_pred CcCCH-----------------------------------------------------HH--------H-----------
Confidence 22100 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1459)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 977 (1459)
...+...
T Consensus 234 ------------------------~~~~~~~------------------------------------------------- 240 (501)
T PRK10762 234 ------------------------IEMMVGR------------------------------------------------- 240 (501)
T ss_pred ------------------------HHHhcCC-------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1459)
Q Consensus 978 ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~ 1057 (1459)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137 (1459)
Q Consensus 1058 ~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1137 (1459)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCC
Q 000503 1138 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217 (1459)
Q Consensus 1138 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~w 1217 (1459)
.. . ..++.. ..+
T Consensus 241 -------------~~-~----------------------------------------------~~~~~~-----~~~--- 252 (501)
T PRK10762 241 -------------KL-E----------------------------------------------DQYPRL-----DKA--- 252 (501)
T ss_pred -------------Cc-c----------------------------------------------cccccc-----ccC---
Confidence 00 0 000000 000
Q ss_pred CCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-HHH
Q 000503 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDL 1296 (1459)
Q Consensus 1218 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~l 1296 (1459)
|..-.|+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+
T Consensus 253 ~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 253 PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 0112488999974 37999999999999999999999999999999999999999999999999987664 356
Q ss_pred hcccEEEeCCC---cCCC-ccHHHhcCcCCC---------CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhH
Q 000503 1297 RGRFAVVPQSP---FLFE-GSLRDNLDPFHM---------NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQ 1362 (1459)
Q Consensus 1297 R~~i~~VpQdp---~lf~-gTIReNLdp~~~---------~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQ 1362 (1459)
|++++||||+| .+|. -|+++|+..... .+..+ .+....+.++.+|++ ...+.....|||||
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 78899999997 3554 599999964211 01111 111234455556774 34566677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChh
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1440 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~ 1440 (1459)
|||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999998864 47899999999999876 8999999999999999988
Q ss_pred HHh
Q 000503 1441 TLL 1443 (1459)
Q Consensus 1441 eLl 1443 (1459)
++.
T Consensus 481 ~~~ 483 (501)
T PRK10762 481 QAT 483 (501)
T ss_pred cCC
Confidence 764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-62 Score=617.64 Aligned_cols=528 Identities=23% Similarity=0.288 Sum_probs=418.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 356 (1459)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 356 (1459)
++ .++...++.++..++....|.++..+++.+.. .......+...+++++++..++.....+...+.+.++...+..
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77778888888999999999999999988762 1222233334444444556666666667777777999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHH
Q 000503 357 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWS-LPFQIGVALYLLY---TQVKFAFVSGLAITILLI 432 (1459)
Q Consensus 357 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~-~p~~i~i~~~lL~---~~lg~a~l~~~~v~~~~~ 432 (1459)
.+|+|.++++...+++...|++++.++.|++.+............ +++.++..+.+++ +.+++..+.+ .+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~~~~~ 166 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLI---LPLLA 166 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHH
Confidence 999999999999988888999999999999999987766433222 3333333222222 2333333322 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 000503 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF--WAT 510 (1459)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~--~~~ 510 (1459)
....++.++.++..++..+..++..+.+.|.++|++.||.++.|+...++..+..++..+...+........... ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666688888888899999999999999999999999999877666655444444433323222222211 112
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCC
Q 000503 511 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1459)
Q Consensus 511 ~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 590 (1459)
.-....++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++.++...+... +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~----~- 321 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD----P- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC----C-
Confidence 22234455667777788889999999999999999999999999999999999999999999987442111000 0
Q ss_pred cccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEE
Q 000503 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1459)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 670 (1459)
.......|+++|++|+|+++ +++|+|+||++++||.++||||+||||||++++|+|+++|++|+|.+
T Consensus 322 --------~~~~~~~I~f~~vsf~y~~~-----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 322 --------LKDTIGSIEFENVSFSYPGK-----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred --------CCCCCCeEEEEEEEEEcCCC-----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 01234569999999999742 34599999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 671 ~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
+| +||||||+|+||++||+|||.+|++ .++++..++++.+++++.++.+|+|++|.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 87 5999999999999999999999987 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecC
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1459)
|||||++||||++++|+|++||||||+||+++++.|.+.+ .. +.++||+|+|+||++.+..||+|++|++|+|++.|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL-KK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999998874 32 457789999999999999999999999999999999
Q ss_pred HHHHHhccccCccc
Q 000503 817 SADLAVSLYSGFWS 830 (1459)
Q Consensus 817 ~~~l~~~~~~~~~~ 830 (1459)
|+|++++++.+.++
T Consensus 547 h~eLl~~~g~y~~l 560 (567)
T COG1132 547 HEELLAKGGLYARL 560 (567)
T ss_pred HHHHHHcCCHHHHH
Confidence 99999876655443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=671.55 Aligned_cols=548 Identities=19% Similarity=0.204 Sum_probs=395.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1459)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 965 (1459)
.+..+..++..++..+... +..++...+...+++.++...+.............|+.++++..++..++.....+....
T Consensus 289 ~~l~~~l~~~~~~~~~~~~-~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 367 (1495)
T PLN03232 289 PWLLRALNNSLGGRFWLGG-IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGR 367 (1495)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555544333 344566666666777776665533211111111112222222222222222222223356
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 000503 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1459)
Q Consensus 966 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1459)
.+.+....+...+++++++.|..++++.++|+++||+++|++.+++... .+..+....+.+++.++++.....+..++.
T Consensus 368 ~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~ 446 (1495)
T PLN03232 368 VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVASLFG 446 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6777778888899999999999999999999999999999999988753 333333333333333332222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1459)
Q Consensus 1046 ~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1125 (1459)
+++.+++..+..++.+..++.++.....+....+.+.|.++|+++||+|+||+.+.+++.+..+...+..........+.
T Consensus 447 ~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~ 526 (1495)
T PLN03232 447 SLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223333333444444445555667789999999999999999999999999887766555544433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 000503 1126 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1205 (1459)
Q Consensus 1126 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e 1205 (1459)
........ .++.++.+.+.... .+..++|.+..++++...+..++..+...+..+..+..|.+|+.++++.+++
T Consensus 527 ~~~~~~~~-~~~~~~~fg~~~v~-----~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~ 600 (1495)
T PLN03232 527 SFILNSIP-VVVTLVSFGVFVLL-----GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600 (1495)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 22111111 11111111111111 2345788888888999999999999999999999999999999999986654
Q ss_pred ccccCCCCCCCCCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEEC
Q 000503 1206 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1459)
Q Consensus 1206 ~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1459)
.... .+ +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 601 ~~~~--~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 601 ILAQ--NP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred cccc--cC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 2111 11 111234579999999999753 35799999999999999999999999999999999999999999773
Q ss_pred CEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhH
Q 000503 1285 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1362 (1459)
Q Consensus 1285 G~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQ 1362 (1459)
.+|++++||||+|++|+|||||||.++.++++++++++++.|++.+.++.+ |+||.|||+|.+|||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 368899999999999999999999999888999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhH
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I-~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~e 1441 (1459)
||||+||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+|
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999866 556777778999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHhh
Q 000503 1442 LLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1442 Ll~~~~~~f~~l~~~~ 1457 (1459)
|+++ ++.|+++++..
T Consensus 826 L~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 826 LSKS-GSLFKKLMENA 840 (1495)
T ss_pred HHhc-chhHHHHHHhc
Confidence 9975 46899988654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-62 Score=666.75 Aligned_cols=545 Identities=18% Similarity=0.197 Sum_probs=390.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1459)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1459)
..+..++..++..+.. +++.++..++...+++.++...+.............++.++++..++..++..-..+.....+
T Consensus 291 l~~~l~~~~~~~~~~~-~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (1622)
T PLN03130 291 LLRALNNSLGGRFWLG-GFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1622)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555443332 234455556666667766665543211111111111111111111111211111112234566
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 000503 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1459)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1459)
.+....+...+++++++.|..++++.++|+++|++++|++.+++.... +..+....+.+++.++++.....+..++.++
T Consensus 370 ~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~ 448 (1622)
T PLN03130 370 FRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVASLIGSL 448 (1622)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999999999987643 3333333333333333333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1459)
Q Consensus 1048 l~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1127 (1459)
++++...++.++.+..+..++.....+....+.+.|.++|+++||+|+||+.|.+++.+..+...+..........+...
T Consensus 449 v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 528 (1622)
T PLN03130 449 MLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333434444444444556667778999999999999999999999999987666544433322222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 000503 1128 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL 1207 (1459)
Q Consensus 1128 ~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~ 1207 (1459)
...... .++.++.+...... .+..++|.+..++++...+..++..+...+..+..+..|.+|+.++++.+++..
T Consensus 529 ~~~~~~-~~v~~~~fg~~~~~-----~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~ 602 (1622)
T PLN03130 529 ILNSIP-VLVTVVSFGVFTLL-----GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVL 602 (1622)
T ss_pred HHHHHH-HHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 111111 11111111111111 234578888888888888888999999999999999999999999997654321
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCC-ceEEECC
Q 000503 1208 CGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-GQILVDG 1285 (1459)
Q Consensus 1208 ~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~-G~I~IDG 1285 (1459)
... ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+|.+
T Consensus 603 ~~~--~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 603 LPN--PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred ccC--Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 111 11 11224579999999999753 3579999999999999999999999999999999999999999 99974
Q ss_pred EeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHH
Q 000503 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1363 (1459)
Q Consensus 1286 ~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQr 1363 (1459)
|++|+||||+|++|+|||||||.++.++++++++++++.|+|.+.++.+ |++|.|||+|.+||||||
T Consensus 678 -----------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQK 746 (1622)
T PLN03130 678 -----------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746 (1622)
T ss_pred -----------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHH
Confidence 7799999999999999999999999889999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHH
Q 000503 1364 QLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~I-~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
|||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|+|+||
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL 826 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999866 6678777789999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHhh
Q 000503 1443 LQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1443 l~~~~~~f~~l~~~~ 1457 (1459)
+++ ++.|+++++..
T Consensus 827 ~~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 827 SNN-GPLFQKLMENA 840 (1622)
T ss_pred Hhc-chhHHHHHHhc
Confidence 975 46899988654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=609.81 Aligned_cols=507 Identities=21% Similarity=0.213 Sum_probs=401.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 278 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 356 (1459)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 356 (1459)
++.++..+++.++..++..+.|++++.++|.+. ++......+.+++.++++.++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999874 3222223334455555666777788888888889999999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHH
Q 000503 357 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLL---YTQVKFAFVSGLAITILLI 432 (1459)
Q Consensus 357 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL---~~~lg~a~l~~~~v~~~~~ 432 (1459)
.+|+|.++++.....+.++|++++.++.|++.+.+... .+..+....+.+++++.++ .+.+++..++++ ++..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~---~l~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTA---PLIP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Confidence 99999999999988889999999999999999987554 3555555444443333322 233333333222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1459)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1459)
.+..++.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++.-++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355677777888888899999999999999999999999999999888876654444443333333333222222222
Q ss_pred HHH--HHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCC
Q 000503 513 TLF--SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1459)
Q Consensus 513 ~~~--~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 590 (1459)
.+. .++.++.+.+.++.+|.+.+++++.+...+..|+..+...+..+.++..+++|+.++++.++...... ..+
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~- 314 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCC-
Confidence 121 12234445555778999999999999999999999999999999999999999999997442111000 000
Q ss_pred cccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEE
Q 000503 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1459)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 670 (1459)
......++++|++|+|+..+ +++|+|+||++++|+.++|+||+|||||||+++|+|+++|++|+|.+
T Consensus 315 ---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 315 ---------AAPAPSLEFSGLSVAYPGRR----APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ---------CCCCCeEEEEEEEEECCCCC----cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 01124699999999997431 24599999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 671 ~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
+| .++||+|+|++|++||||||.++.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 87 4999999999999999999999864 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEE
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 806 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l 806 (1459)
|||||++||||++++|++++||||||+||+++++.+.+. +.. ..+++|+|+||||++.++.||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999999887 444 45789999999999999999999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=626.43 Aligned_cols=451 Identities=21% Similarity=0.352 Sum_probs=344.1
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.. +.+|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35889999999852 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCCC-CHHHHhccCCCCC---HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFGKNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~-ti~~nI~~g~~~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
.++|++|++.++.. |++||+.++.... +++..++++..++... ......+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHH
Confidence 38999999987765 9999999875322 2344555666655422 2334568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHhcc
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSL 824 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 824 (1459)
|||+.+|+++||||||++||+...+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH
Confidence 999999999999999999999999988876 33222347899999999998865 9999999999999887765531100
Q ss_pred ccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhhHHHHHHH
Q 000503 825 YSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVI 904 (1459)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~ 904 (1459)
. ... +.
T Consensus 232 ------------------------------------------------~---~~~------------~~----------- 237 (510)
T PRK15439 232 ------------------------------------------------I---IQA------------IT----------- 237 (510)
T ss_pred ------------------------------------------------H---HHH------------Hh-----------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000503 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1459)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1459)
.. . ..
T Consensus 238 ----------------------~~--~--~~------------------------------------------------- 242 (510)
T PRK15439 238 ----------------------PA--A--RE------------------------------------------------- 242 (510)
T ss_pred ----------------------Cc--c--cc-------------------------------------------------
Confidence 00 0 00
Q ss_pred CccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1459)
Q Consensus 985 ~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr 1064 (1459)
.
T Consensus 243 -------------------------------------------------------------------------------~ 243 (510)
T PRK15439 243 -------------------------------------------------------------------------------K 243 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1144 (1459)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1144 (1459)
+.+..
T Consensus 244 ~~~~~--------------------------------------------------------------------------- 248 (510)
T PRK15439 244 SLSAS--------------------------------------------------------------------------- 248 (510)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEE
Q 000503 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1224 (1459)
Q Consensus 1145 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1224 (1459)
. +. .+ ..+.... ..+ +.+-.|+
T Consensus 249 ------~-------------------------------------------~~-~~-~~~~~~~----~~~---~~~~~l~ 270 (510)
T PRK15439 249 ------Q-------------------------------------------KL-WL-ELPGNRR----QQA---AGAPVLT 270 (510)
T ss_pred ------c-------------------------------------------cc-cc-ccccccc----ccC---CCCceEE
Confidence 0 00 00 0000000 000 0112489
Q ss_pred EEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH-HhcccEEE
Q 000503 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVV 1303 (1459)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~~V 1303 (1459)
++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|++++|+
T Consensus 271 ~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 343 (510)
T PRK15439 271 VEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 (510)
T ss_pred EeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence 999983 2699999999999999999999999999999999999999999999999998776554 46789999
Q ss_pred eCCC---cCCCc-cHHHhcCcC--C--C-C-ChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1304 PQSP---FLFEG-SLRDNLDPF--H--M-N-DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1304 pQdp---~lf~g-TIReNLdp~--~--~-~-~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
||++ .+|+. |+++|+... . . . ...+ ++..+.+.++.+|++ .........||||||||++||||+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 9996 36654 999998432 1 0 0 1111 112234555666775 456666778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|+++..|+++++..+
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 99999999999999999999999999998764 48999999999999986 899999999999999999887643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=625.73 Aligned_cols=447 Identities=22% Similarity=0.298 Sum_probs=333.7
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC--CCeEEEEcC-----------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG----------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~--~~G~i~~~~----------- 672 (1459)
++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 578899998852 2359999999999999999999999999999999999987 799999875
Q ss_pred ---cEEEEcCCCCCCCC-CHHHHhccCCCC-------CHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcH
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY-------DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~-ti~~nI~~g~~~-------~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 737 (1459)
.++|++|+|.++.. |++||+.++..+ +.+ +.+++++.+++.... + .....+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG 145 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------V----TRPVGDYGGG 145 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------c----cCchhhCCHH
Confidence 38999999987765 999999876421 211 233344444432111 0 1234589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecC
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 738 QkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1459)
|||||+||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI-IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecC
Confidence 99999999999999999999999999999999988876 33212357899999999999875 99999999999876543
Q ss_pred HHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhh
Q 000503 817 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 896 (1459)
Q Consensus 817 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 896 (1459)
.+++. . . . ....+
T Consensus 225 ~~~~~------------------------------------------------~-----~--------~--~~~~~---- 237 (500)
T TIGR02633 225 MSTMS------------------------------------------------E-----D--------D--IITMM---- 237 (500)
T ss_pred cccCC------------------------------------------------H-----H--------H--HHHHH----
Confidence 11000 0 0 0 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1459)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 976 (1459)
..
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (500)
T TIGR02633 238 -----------------------------VG------------------------------------------------- 239 (500)
T ss_pred -----------------------------hC-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1459)
Q Consensus 977 ~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 1056 (1459)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T TIGR02633 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136 (1459)
Q Consensus 1057 ~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1136 (1459)
+
T Consensus 240 -----------------~-------------------------------------------------------------- 240 (500)
T TIGR02633 240 -----------------R-------------------------------------------------------------- 240 (500)
T ss_pred -----------------c--------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCC
Q 000503 1137 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1216 (1459)
Q Consensus 1137 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~ 1216 (1459)
. .. . ..+.+. .+
T Consensus 241 --------------~--~~---~-----------------------------------------~~~~~~-----~~--- 252 (500)
T TIGR02633 241 --------------E--IT---S-----------------------------------------LYPHEP-----HE--- 252 (500)
T ss_pred --------------c--cc---c-----------------------------------------cccccc-----cC---
Confidence 0 00 0 000000 00
Q ss_pred CCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-CCceEEECCEeCCCCC-h
Q 000503 1217 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIINTP-V 1293 (1459)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-~~G~I~IDG~di~~i~-~ 1293 (1459)
+.+-.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+ .
T Consensus 253 -~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 253 -IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred -CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 011248999999999432 23599999999999999999999999999999999999995 8999999999986543 3
Q ss_pred HHHhcccEEEeCCC---cCCC-ccHHHhcCcCCC--CCh-HHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHH
Q 000503 1294 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFHM--NDD-LKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp---~lf~-gTIReNLdp~~~--~~d-~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQr 1365 (1459)
..+|++++++||++ .+|+ .|+++|+..... ... ..+...-.+....+.++.+|+.. ........||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 56788999999996 3666 499999975311 000 00000111122344555556642 3445556899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHH
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
++|||||+++|++|||||||++||..+.+.+++.|++.. ++.|||+|||+++.+.. ||||++|++|+++..++.+++
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999998753 47899999999999976 899999999999988766554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=648.76 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=187.4
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcc
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1459)
...|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.+..|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533569999999999999999999999999999999999999999999999999975 45677899
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
|||+||++.+++. |+||||..+. ..+++++.+. ..+.++.+||+...+.....||||||||+++||||+.+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999998875 9999996532 1222222211 22344445666555666668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~-~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|+||+|||||++||+.+.+.+++.|++. .+++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999886 358999999999999986 899999999999999999999654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=567.44 Aligned_cols=523 Identities=22% Similarity=0.273 Sum_probs=417.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000503 285 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 364 (1459)
Q Consensus 285 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~ 364 (1459)
.++..+..+....|-.++-..++.+-..+.....+.++++++++.++++++.....+..++.+.++|..|+..+++|..+
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~ 85 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAK 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666667667666666554433344455677788888899999999999999999999999999999999999
Q ss_pred CCccccCCCChhHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 365 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN----SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 440 (1459)
Q Consensus 365 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~----~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~ 440 (1459)
++....+..++|++.+++..-++.+...+. .....-..|+-+.++++++.+.-|+..++.+..+.+++ ..+++
T Consensus 86 ~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilvg~ 162 (559)
T COG4988 86 LGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILVGL 162 (559)
T ss_pred CChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 998888888999999999999999887433 33344557777888888888776666555544444433 44556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 441 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLM----KTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516 (1459)
Q Consensus 441 ~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~----~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1459)
..++..+++++....-.+..-+-|+|+.++|.|+..+...++|. +.|+.-|+.++-.-.-....-++.... +...
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-iAlv 241 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-IALV 241 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66677778888888888889999999999999998766666654 456555555543332223333332222 2222
Q ss_pred HHHHHHHHHhC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCC
Q 000503 517 LFTFGLFALMG-HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 595 (1459)
Q Consensus 517 ~~~f~~~~~~~-~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~ 595 (1459)
.+.+ .+.+.+ |+++....+.++.+.--+-.|+..+...+..-.++.++.+++..|++.|............
T Consensus 242 Av~~-g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~------- 313 (559)
T COG4988 242 AVYI-GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV------- 313 (559)
T ss_pred HHHH-HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc-------
Confidence 2333 334455 6899999999999999999999999999999999999999999999877543311100000
Q ss_pred CcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---
Q 000503 596 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672 (1459)
Q Consensus 596 ~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--- 672 (1459)
...+...+..+|.+|.|+.. +++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.++|
T Consensus 314 ---~~~~~~ei~~~~l~~~y~~g-----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 314 ---ANEPPIEISLENLSFRYPDG-----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred ---ccCCCceeeecceEEecCCC-----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 01223445566999999753 1459999999999999999999999999999999999999999999987
Q ss_pred ----------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ----------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ----------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
+++||+|+|.||++||||||+++++ -+++...++++..+|.+.++. |+|.+|.+||+|.+|||||+||
T Consensus 386 ~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 386 RDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred cccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHH
Confidence 5999999999999999999999987 668899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
|+||||++++++++|||||||+||.++++.|.+. +.. +.+++|+|+||||++.+..+|+|++|++|+++++|+|+++.
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 9999999999999999999999999999988887 443 67789999999999999999999999999999999999998
Q ss_pred hccccCccc
Q 000503 822 VSLYSGFWS 830 (1459)
Q Consensus 822 ~~~~~~~~~ 830 (1459)
++.+.+.++
T Consensus 543 ~~~~~y~~l 551 (559)
T COG4988 543 EKQGLYANL 551 (559)
T ss_pred hcCcHHHHH
Confidence 877666544
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=605.60 Aligned_cols=533 Identities=18% Similarity=0.214 Sum_probs=414.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1459)
Q Consensus 273 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~ 352 (1459)
.++.+++.++..+++.++..++..+.|++++.++|.+...... ..+++.+++..++..+......+...++..+++.
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999999977542211 1111122223333444444445566778888899
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Q 000503 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAIT 428 (1459)
Q Consensus 353 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~l---L~~~lg~a~l~~~~v~ 428 (1459)
.+...+|+|.++++...+++.++|++++.++.|++.+..... .+..+...++.+++++++ +.+.+++.++ +++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l---~~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM---VLG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999999998888999999999999999986543 333444444444333222 2233333332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1459)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1459)
++...+..++.+++.+..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+..........+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677777888888888889999999999999999999999998888877765443333333322222222221
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000503 509 ATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1459)
Q Consensus 509 ~~~--~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1459)
... -..+.++.+|.|.+.++.++++.+++++.++..+..|+..+...+..+.++..+++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-- 324 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-- 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc--
Confidence 111 1223456678888888999999999999999999999999999999999999999999999975432110000
Q ss_pred CCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000503 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1459)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1459)
.+. .+.....++++|++|+|+.+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~i~~~~v~~~y~~~-----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 325 -APE--------LPNVKGAVEFRHITFEFANS-----SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred -CCC--------CCCCCCeEEEEEEEEECCCC-----CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 000 01123469999999999642 2359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
+|.++| .++||+|+|++|++|++|||.++.+ .++++..++++.+++++.+..+|+|++|.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 999876 5899999999999999999999864 57778888999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. ..+++|+|+|||+++.++.||+|++|++|+++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998876 433 45689999999999999999999999999999
Q ss_pred EecCHHHHHhccccCcc
Q 000503 813 WIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 813 ~~g~~~~l~~~~~~~~~ 829 (1459)
+.|+++++.++.+.+.+
T Consensus 549 ~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 549 EKGSFQELIQKDGRFYK 565 (585)
T ss_pred EECCHHHHHHCCChHHH
Confidence 99999999876655443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=616.40 Aligned_cols=202 Identities=19% Similarity=0.305 Sum_probs=170.8
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999987 3579
Q ss_pred EEEeCCCc--CCC-ccHHHhcCcCCC--CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1301 AVVPQSPF--LFE-GSLRDNLDPFHM--NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1301 ~~VpQdp~--lf~-gTIReNLdp~~~--~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+|+||++. +++ .|+++|+..... ..++++.++++. +|+. .........||||||||++||||+++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGR---------LLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHH---------cCCChhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 99999984 443 599999864321 122334444444 3553 33455667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEE-EecChhHHhccC
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLLQDE 1446 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~Iv-E~G~p~eLl~~~ 1446 (1459)
+|+||||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||||++|++|+++ +.|+++++++.+
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999876 4599999999999886 8999999999998 789999987653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=622.00 Aligned_cols=443 Identities=21% Similarity=0.285 Sum_probs=334.3
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 4788999998852 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCCC-CHHHHhccCCC------CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 --SIAYVPQVPWILSG-TIRDNILFGKN------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~-ti~~nI~~g~~------~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.|+|++|+|.++.. |++||+.++.. .+. ++..++++.+++... ......+||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~ 146 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQR 146 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHH
Confidence 38999999988765 99999988631 122 233445555544321 2334568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1459)
|||+||||+..+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..++..
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV-IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDM 225 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcc
Confidence 999999999999999999999999999999988876 33212347899999999999865 9999999999987533100
Q ss_pred HHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhhH
Q 000503 819 DLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 898 (1459)
Q Consensus 819 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 898 (1459)
+ . . . .+. +.
T Consensus 226 ~-------------~-----------------------------~-----~------~~~-------------~~----- 234 (501)
T PRK11288 226 A-------------Q-----------------------------V-----D------RDQ-------------LV----- 234 (501)
T ss_pred c-------------c-----------------------------C-----C------HHH-------------HH-----
Confidence 0 0 0 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 899 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 978 (1459)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~l 978 (1459)
..+...
T Consensus 235 ------------------------~~~~~~-------------------------------------------------- 240 (501)
T PRK11288 235 ------------------------QAMVGR-------------------------------------------------- 240 (501)
T ss_pred ------------------------HHhcCC--------------------------------------------------
Confidence 000000
Q ss_pred HHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 979 LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFF 1058 (1459)
Q Consensus 979 l~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~ 1058 (1459)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1059 YRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS 1138 (1459)
Q Consensus 1059 y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 1138 (1459)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCC
Q 000503 1139 FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWP 1218 (1459)
Q Consensus 1139 ~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp 1218 (1459)
.. .. . ...++. + +
T Consensus 241 ------------~~-~~----------------------------------------~---~~~~~~-------~----~ 253 (501)
T PRK11288 241 ------------EI-GD----------------------------------------I---YGYRPR-------P----L 253 (501)
T ss_pred ------------Cc-cc----------------------------------------c---cccccc-------C----C
Confidence 00 00 0 000000 0 0
Q ss_pred CCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC-hHHHh
Q 000503 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLR 1297 (1459)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR 1297 (1459)
.+..++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|
T Consensus 254 ~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 254 GEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred CCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHh
Confidence 1124889999742 4899999999999999999999999999999999999999999999999987543 34567
Q ss_pred cccEEEeCCCc---CCC-ccHHHhcCcCCC-C-ChHHH--HHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHH
Q 000503 1298 GRFAVVPQSPF---LFE-GSLRDNLDPFHM-N-DDLKI--WSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1298 ~~i~~VpQdp~---lf~-gTIReNLdp~~~-~-~d~ei--~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~L 1368 (1459)
++++|+||+|. +|+ .|+.+|+..... . ..... ...-++....+.++.+|++ ........+||||||||++|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 89999999973 554 699999865311 0 00000 0000111233455555773 34555566899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|+++|..
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999998764 47899999999999976 8999999999999999998765
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=614.67 Aligned_cols=435 Identities=22% Similarity=0.321 Sum_probs=328.1
Q ss_pred EcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------cE
Q 000503 609 QDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------------SI 674 (1459)
Q Consensus 609 ~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------------~i 674 (1459)
+|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 2 ~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 2 SNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 466777642 2359999999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCC-CCHHHHhccCCC------CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 675 AYVPQVPWILS-GTIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 675 ~y~~Q~~~l~~-~ti~~nI~~g~~------~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
+|++|++.++. .|++||+.++.. .+.+ +.+++++.+++.. .......+|||||||||+
T Consensus 76 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIE 144 (491)
T ss_pred EEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHH
Confidence 99999998765 599999987631 1222 2223333333321 223456799999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||||+..+|+++||||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 223 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM 223 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH
Confidence 99999999999999999999999999998776 33312357899999999998865 99999999999987665322100
Q ss_pred ccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhhHHHHH
Q 000503 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 902 (1459)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 902 (1459)
.+. .
T Consensus 224 -----------------------------------------------------~~~-------~---------------- 227 (491)
T PRK10982 224 -----------------------------------------------------DKI-------I---------------- 227 (491)
T ss_pred -----------------------------------------------------HHH-------H----------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 903 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1459)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 982 (1459)
..+..
T Consensus 228 --------------------~~~~~------------------------------------------------------- 232 (491)
T PRK10982 228 --------------------AMMVG------------------------------------------------------- 232 (491)
T ss_pred --------------------HHHhC-------------------------------------------------------
Confidence 00000
Q ss_pred hcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1459)
Q Consensus 983 l~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~ 1062 (1459)
T Consensus 233 -------------------------------------------------------------------------------- 232 (491)
T PRK10982 233 -------------------------------------------------------------------------------- 232 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1142 (1459)
Q Consensus 1063 sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1142 (1459)
+
T Consensus 233 -----------~-------------------------------------------------------------------- 233 (491)
T PRK10982 233 -----------R-------------------------------------------------------------------- 233 (491)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCcc
Q 000503 1143 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1222 (1459)
Q Consensus 1143 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1222 (1459)
. .. + ..+.+. .+ +.+..
T Consensus 234 --------~--~~---------------------------------------~-----~~~~~~-----~~----~~~~~ 250 (491)
T PRK10982 234 --------S--LT---------------------------------------Q-----RFPDKE-----NK----PGEVI 250 (491)
T ss_pred --------C--cc---------------------------------------c-----cccccc-----CC----CCCcE
Confidence 0 00 0 000000 00 01125
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH-HHhcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR-DLRGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~-~lR~~i~ 1301 (1459)
|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 8999999875 2489999999999999999999999999999999999999999999999999876654 4577899
Q ss_pred EEeCCCc---CCC-ccHHHh-----cCcCCC----CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHH
Q 000503 1302 VVPQSPF---LFE-GSLRDN-----LDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1302 ~VpQdp~---lf~-gTIReN-----Ldp~~~----~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~ 1367 (1459)
|+||++. +|+ .|+++| +..... .+..+.. ....+.++.+|+. .........||||||||++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 9999963 565 477766 321111 1111111 1223445555663 2345566789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
||||++++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..++++++.
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTT 479 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999997753 48999999999999876 8999999999999888776544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-60 Score=598.82 Aligned_cols=469 Identities=19% Similarity=0.230 Sum_probs=349.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhh
Q 000503 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032 (1459)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1032 (1459)
.++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+...+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44566677788888999999999999999999999999999999999999999999887544 35556666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcH---HHHHHHHHHHHH
Q 000503 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE---DYFMAKFKEHVV 1109 (1459)
Q Consensus 1033 ~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e---~~~~~~~~~~~~ 1109 (1459)
++.+.+|.++++++..+.+...+..+..+..+...+...+..+.+.+++.|.++|+++++ ++.+ +.+.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 777778877665554444443343333333333333344566788899999999999995 5443 456777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1110 LYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKE 1189 (1459)
Q Consensus 1110 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~ 1189 (1459)
...+..+...............+.. ..+++..+... .. .....+.++....+...+..++..+...+.++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 220 EYRHHIIRADTFHLSAVNWSNIMML---GAIGLVFYMAN--SL--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--Hh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444322211111111111111 11111111111 00 01122333333334444567888899999999999
Q ss_pred HHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHH
Q 000503 1190 MVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1269 (1459)
Q Consensus 1190 ~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~ 1269 (1459)
..+.+|+.++.+.++|+......+ -|..+.|+++||+|+|++ .+++|+|+||+|+|||++||+|+||||||||+++
T Consensus 293 ~~a~~ri~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEFPRPQA---FPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred HHHHHHHHHHhccccccccccccc---cCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 999999999876554321111111 122357999999999974 3469999999999999999999999999999999
Q ss_pred HhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCch
Q 000503 1270 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1349 (1459)
Q Consensus 1270 L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt 1349 (1459)
|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ....+|++++++++++++.+.+.
T Consensus 369 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~------ 439 (547)
T PRK10522 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE------ 439 (547)
T ss_pred HhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh------
Confidence 999999999999999999999999999999999999999999999999 23456777887887776654432
Q ss_pred hhhc---CCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCE
Q 000503 1350 FVKE---SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDE 1424 (1459)
Q Consensus 1350 ~v~e---~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~Dr 1424 (1459)
.++ +|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+
T Consensus 440 -~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~ 518 (547)
T PRK10522 440 -LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADR 518 (547)
T ss_pred -ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCE
Confidence 222 378999999999999999999999999999999999999999999987654 48999999999999999999
Q ss_pred EEEEeCCeEEEe-cChhHHhc
Q 000503 1425 ILILDHGHLVEQ-GNPQTLLQ 1444 (1459)
Q Consensus 1425 IlVl~~G~IvE~-G~p~eLl~ 1444 (1459)
|++|++|+++|. |++.+-..
T Consensus 519 i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 519 LLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred EEEEECCEEEEecCCchhhhh
Confidence 999999999988 55554443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-61 Score=604.99 Aligned_cols=202 Identities=23% Similarity=0.285 Sum_probs=167.5
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 46999999999964 3599999999999999999999999999999999999999999999954 2 169
Q ss_pred EEEeCCC-cCCCc-cHHHhcCcCCCC----C-hHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHH
Q 000503 1301 AVVPQSP-FLFEG-SLRDNLDPFHMN----D-DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1301 ~~VpQdp-~lf~g-TIReNLdp~~~~----~-d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
+|+||++ .++.. |+++|+...... . +.+.. +.++.+|+.. ........||||||||++||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999997 56654 999999653211 1 11111 2344456643 34555668999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeC-CeEEE-ecChhHHhccC
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVE-QGNPQTLLQDE 1446 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~-G~IvE-~G~p~eLl~~~ 1446 (1459)
+.+|++|||||||++||+.+.+.+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+ .|++++++++.
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 9999999999999999999999999999875 4 499999999999876 899999986 88874 78898887653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=609.48 Aligned_cols=442 Identities=19% Similarity=0.252 Sum_probs=330.5
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 4 LQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred EEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 788999999853 1259999999999999999999999999999999999999999998754
Q ss_pred cEEEEcCCCCC---------CCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 SIAYVPQVPWI---------LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 ~i~y~~Q~~~l---------~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
.++|++|++.+ +..|++||+.++.. ++++.+++++..+++... .....+|||||||||+
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTL 145 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHH
Confidence 27999998753 14599999876532 344566677777665322 2345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||||+..+|+++||||||++||+...+++.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAEL-LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999988876 33312347899999999998875 99999999999998776554321
Q ss_pred ccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhhHHHHH
Q 000503 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 902 (1459)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 902 (1459)
... . .+..+.
T Consensus 225 ~~~--------------------------------------------~-------~~~~~~------------------- 234 (490)
T PRK10938 225 QAL--------------------------------------------V-------AQLAHS------------------- 234 (490)
T ss_pred chh--------------------------------------------h-------hhhhhh-------------------
Confidence 000 0 000000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 903 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1459)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 982 (1459)
T Consensus 235 -------------------------------------------------------------------------------- 234 (490)
T PRK10938 235 -------------------------------------------------------------------------------- 234 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1459)
Q Consensus 983 l~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~ 1062 (1459)
T Consensus 235 -------------------------------------------------------------------------------- 234 (490)
T PRK10938 235 -------------------------------------------------------------------------------- 234 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1142 (1459)
Q Consensus 1063 sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1142 (1459)
+.+ .+.
T Consensus 235 -~~~-------------------~~~------------------------------------------------------ 240 (490)
T PRK10938 235 -EQL-------------------EGV------------------------------------------------------ 240 (490)
T ss_pred -hcc-------------------Ccc------------------------------------------------------
Confidence 000 000
Q ss_pred HHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCcc
Q 000503 1143 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1222 (1459)
Q Consensus 1143 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1222 (1459)
.... ..+.... ...+ .....
T Consensus 241 --------~~~~------------------------------------------------~~~~~~~-~~~~---~~~~~ 260 (490)
T PRK10938 241 --------QLPE------------------------------------------------PDEPSAR-HALP---ANEPR 260 (490)
T ss_pred --------ccCc------------------------------------------------ccccccc-cccC---CCCce
Confidence 0000 0000000 0000 01225
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-CCceEEECCEeCCC-CChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIIN-TPVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-~~G~I~IDG~di~~-i~~~~lR~~i 1300 (1459)
|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.. .+....|+++
T Consensus 261 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 261 IVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred EEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 999999999964 3599999999999999999999999999999999998876 69999999987632 2334568899
Q ss_pred EEEeCCCcCCC---ccHHHhcCcC--C---CC--ChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000503 1301 AVVPQSPFLFE---GSLRDNLDPF--H---MN--DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1301 ~~VpQdp~lf~---gTIReNLdp~--~---~~--~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LA 1369 (1459)
+|+||++.++. -|+++++.+. . .. .+.+. +....+.++.+|++. ........||||||||++||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-----QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 99999986542 3677776421 1 01 01110 111234444556765 45555668999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhHhh--cCEEEEEeCCeEEEec
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN--MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~-~-~TvI~IaHrl~ti~~--~DrIlVl~~G~IvE~G 1437 (1459)
|||+++|+||||||||++||+++.+.+.+.|++..+ + .|||+|||+++.+.. ||++++|++|++++.-
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999988643 3 479999999999975 7999999999998764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=602.25 Aligned_cols=482 Identities=22% Similarity=0.281 Sum_probs=332.3
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--cEEEEcCCCC
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 682 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~~~ 682 (1459)
.++++|++++|+.+ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .||||+|+|+
T Consensus 4 ~i~~~nls~~~~~~-----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCC-----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 47899999998521 2359999999999999999999999999999999999999999999874 6999999999
Q ss_pred CCC-CCHHHHhccCCC-------------------CC--------HHHHHHHHHHhcchh---hHhhcc--CCCcccccC
Q 000503 683 ILS-GTIRDNILFGKN-------------------YD--------PQSYSETLKACTLDV---DISLMV--GGDMAYIGE 729 (1459)
Q Consensus 683 l~~-~ti~~nI~~g~~-------------------~~--------~~~~~~v~~~~~l~~---di~~~~--~gd~t~ig~ 729 (1459)
++. .|++|||.++.. .+ .+++.++++.++... .+..+- -|.. ....
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~ 157 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDA 157 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccC
Confidence 875 599999987521 01 012334444444321 111110 0111 1245
Q ss_pred CCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeC
Q 000503 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDK 808 (1459)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~ 808 (1459)
...+|||||||||+||||++.+|+++||||||++||+.+.+++.+. +.. . +.|+|+|||+++++.. ||+|++|++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~ 233 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQE-Y--PGTVVAVTHDRYFLDNVAGWILELDR 233 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHh-C--CCeEEEEeCCHHHHHhhcCeEEEEEC
Confidence 6679999999999999999999999999999999999999988876 332 2 3699999999999876 999999999
Q ss_pred CeEE-EecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHH
Q 000503 809 GQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELT 887 (1459)
Q Consensus 809 G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 887 (1459)
|+++ ..|+++++..... . .. + ....+.+..+.
T Consensus 234 g~i~~~~g~~~~~~~~~~-----------~-~~--------------~---------------~~~~~~~~~~~------ 266 (552)
T TIGR03719 234 GRGIPWEGNYSSWLEQKE-----------K-RL--------------E---------------QEEKEESARQK------ 266 (552)
T ss_pred CEEEEecCCHHHHHHHHH-----------H-HH--------------H---------------HHHHHHHHHHH------
Confidence 9975 6788877642100 0 00 0 00000000000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1459)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1459)
.+.. ...|...
T Consensus 267 ----~~~~--------------------------~~~~~~~--------------------------------------- 277 (552)
T TIGR03719 267 ----ALKR--------------------------ELEWVRS--------------------------------------- 277 (552)
T ss_pred ----HHHH--------------------------HHHHHHh---------------------------------------
Confidence 0000 0000000
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHH
Q 000503 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1459)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1459)
.+
T Consensus 278 -----------------~~------------------------------------------------------------- 279 (552)
T TIGR03719 278 -----------------SP------------------------------------------------------------- 279 (552)
T ss_pred -----------------hh-------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1459)
Q Consensus 1048 l~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1127 (1459)
.. ++. +. +.
T Consensus 280 -------------~~-~~~------------------------------------~~--------~~------------- 288 (552)
T TIGR03719 280 -------------KA-RQA------------------------------------KS--------KA------------- 288 (552)
T ss_pred -------------hh-HHH------------------------------------HH--------HH-------------
Confidence 00 000 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCccc
Q 000503 1128 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEE 1206 (1459)
Q Consensus 1128 ~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~-~~~~~e~ 1206 (1459)
.....++..+. ...+++.
T Consensus 289 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 307 (552)
T TIGR03719 289 -------------------------------------------------------------RLARYEELLSQEFQKRNET 307 (552)
T ss_pred -------------------------------------------------------------HHHHHHhhhhhcccccCCC
Confidence 00000000000 0000000
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCE
Q 000503 1207 LCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1286 (1459)
Q Consensus 1207 ~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~ 1286 (1459)
... ..+...-+.+..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++
T Consensus 308 ~~~-~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~- 383 (552)
T TIGR03719 308 AEI-YIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE- 383 (552)
T ss_pred cee-ecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence 000 000000011235999999999964 3599999999999999999999999999999999999999999999964
Q ss_pred eCCCCChHHHhcccEEEeCCCc-CCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCCh
Q 000503 1287 NIINTPVRDLRGRFAVVPQSPF-LFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSV 1360 (1459)
Q Consensus 1287 di~~i~~~~lR~~i~~VpQdp~-lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSg 1360 (1459)
+ .+++|+||++. +++ -|+++|+..... ....+. ...+.++.+|++. ........|||
T Consensus 384 ~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-------~~~~~l~~~~l~~~~~~~~~~~LSg 446 (552)
T TIGR03719 384 T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-------PSRAYVGRFNFKGSDQQKKVGQLSG 446 (552)
T ss_pred c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH-------HHHHHHHhCCCChhHhcCchhhCCH
Confidence 2 16999999973 665 499999965321 111110 0123444556653 34555668999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeC-CeEEE-ec
Q 000503 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVE-QG 1437 (1459)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~-G~IvE-~G 1437 (1459)
|||||++||||++.+|++|||||||++||..+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++++ .|
T Consensus 447 Ge~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 447 GERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCC
Confidence 9999999999999999999999999999999999999999876 3 499999999999886 899999987 68874 58
Q ss_pred ChhHHhcc
Q 000503 1438 NPQTLLQD 1445 (1459)
Q Consensus 1438 ~p~eLl~~ 1445 (1459)
+++++.+.
T Consensus 525 ~~~~~~~~ 532 (552)
T TIGR03719 525 NYSEYEED 532 (552)
T ss_pred CHHHHHHH
Confidence 88777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=530.60 Aligned_cols=460 Identities=25% Similarity=0.358 Sum_probs=345.8
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 672 (1459)
..+.++|.+..+.... ....++++|||++.+||.+++||.||||||-..++++|+++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3467788777776432 234579999999999999999999999999999999999875 367888776
Q ss_pred -----------cEEEEcCCCCC-CCC--CHHHHh----ccCCCCC----HHHHHHHHHHhcchhhHhhccCCCcccccCC
Q 000503 673 -----------SIAYVPQVPWI-LSG--TIRDNI----LFGKNYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1459)
Q Consensus 673 -----------~i~y~~Q~~~l-~~~--ti~~nI----~~g~~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 730 (1459)
+|+.++|+|-- .|. ||...| ...+..+ +++..+.++..++.+- ...+...
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~y 154 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAY 154 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhC
Confidence 69999999952 232 555444 3433333 2344455555555321 1234556
Q ss_pred CcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCC
Q 000503 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKG 809 (1459)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G 809 (1459)
...|||||||||-||.||..+|++||-||||.|||..+..+|++-+-.-....|..++++||++..+.. ||+|+||.+|
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 679999999999999999999999999999999999999999986322113347799999999999986 9999999999
Q ss_pred eEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHH
Q 000503 810 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 889 (1459)
Q Consensus 810 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 889 (1459)
+++|.|+.+++-..... .|
T Consensus 235 ~ivE~~~t~~lF~~PqH-------------------------------------------------------------pY 253 (534)
T COG4172 235 EIVETGTTETLFAAPQH-------------------------------------------------------------PY 253 (534)
T ss_pred EEeecCcHHHHhhCCCC-------------------------------------------------------------hH
Confidence 99998876554221000 00
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 890 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969 (1459)
Q Consensus 890 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 969 (1459)
T Consensus 254 -------------------------------------------------------------------------------- 253 (534)
T COG4172 254 -------------------------------------------------------------------------------- 253 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHH
Q 000503 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049 (1459)
Q Consensus 970 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~ 1049 (1459)
T Consensus 254 -------------------------------------------------------------------------------- 253 (534)
T COG4172 254 -------------------------------------------------------------------------------- 253 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1129 (1459)
Q Consensus 1050 ~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 1129 (1459)
.+ ++
T Consensus 254 ----------Tr---~L--------------------------------------------------------------- 257 (534)
T COG4172 254 ----------TR---KL--------------------------------------------------------------- 257 (534)
T ss_pred ----------HH---HH---------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccc
Q 000503 1130 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209 (1459)
Q Consensus 1130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~ 1209 (1459)
++ .|+. +
T Consensus 258 ----------------------------------------------------------------------l~--aeP~-g 264 (534)
T COG4172 258 ----------------------------------------------------------------------LA--AEPS-G 264 (534)
T ss_pred ----------------------------------------------------------------------Hh--cCCC-C
Confidence 00 0000 0
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecCC---------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCce
Q 000503 1210 YQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1459)
Q Consensus 1210 ~~~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~ 1280 (1459)
..+|..-...-.++.+||...|+-. .-.+.++|||+.++||.+||||+||||||||-.+|+|+++++ |+
T Consensus 265 -~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~ 342 (534)
T COG4172 265 -DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE 342 (534)
T ss_pred -CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce
Confidence 0011111122357778888887522 124789999999999999999999999999999999999976 99
Q ss_pred EEECCEeCCCCChHH---HhcccEEEeCCCcC-CC--ccHHHhcC----cCC-CCC----hHHHHHHHHHhcHHHHHHhC
Q 000503 1281 ILVDGLNIINTPVRD---LRGRFAVVPQSPFL-FE--GSLRDNLD----PFH-MND----DLKIWSVLEKCHVKEEVEAV 1345 (1459)
Q Consensus 1281 I~IDG~di~~i~~~~---lR~~i~~VpQdp~l-f~--gTIReNLd----p~~-~~~----d~ei~~aL~~~~l~~~i~~l 1345 (1459)
|..+|.||...+.++ +|+++-+|+|||+= ++ -||-+-+. ... ..+ |+.+.+||+.+||+...
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~--- 419 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT--- 419 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH---
Confidence 999999999888665 57899999999971 21 25444332 222 112 34566666666544322
Q ss_pred CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-c
Q 000503 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-M 1422 (1459)
Q Consensus 1346 GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~ 1422 (1459)
...-...|||||||||+||||++-+|++++||||||+||..-...|.+.+++.- .+-+-++|+|+|..++. |
T Consensus 420 -----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~ 494 (534)
T COG4172 420 -----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC 494 (534)
T ss_pred -----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh
Confidence 234455799999999999999999999999999999999999999999998763 47799999999999987 8
Q ss_pred CEEEEEeCCeEEEecChhHHhccCCcHHHHH
Q 000503 1423 DEILILDHGHLVEQGNPQTLLQDECSVFSSF 1453 (1459)
Q Consensus 1423 DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l 1453 (1459)
|+|+||.+|+|||+|+-+++++++...|.+-
T Consensus 495 ~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 495 HRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred ceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9999999999999999999999998877653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=539.46 Aligned_cols=513 Identities=23% Similarity=0.279 Sum_probs=408.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000503 289 VVNDSIGFAGPLLLNKLIKFLQQ--GSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 364 (1459)
Q Consensus 289 l~~~~~~~~~P~ll~~li~~~~~--~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~ 364 (1459)
+..-.+...+|++++.+++.+.. ..+ .......+.+++++.++.+++.-........+..++-......+|++.+.
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ 119 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS 119 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33356677899999999998864 222 22334556667777788888887778888888888888889999999999
Q ss_pred CCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000503 365 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILL-IPVNKWIANLI 442 (1459)
Q Consensus 365 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~-~~~~~~~~~~~ 442 (1459)
++.+.+.+..+|++.+.|..-...|..... .+..+....+++.++...+++..|.+..+...+.+.. ......+..+-
T Consensus 120 ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 120 LDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred hhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 999999889999999999888888887654 4566777888899988899999998766544433333 33344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000503 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL-FSLFTFG 521 (1459)
Q Consensus 443 ~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~ 521 (1459)
.+.+++.+++.++..+..-+.|.|-.+||.|+-|+...++....-.+--+...+.....++.++. ...+ ....++.
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfg---Q~~iFsv~~~~i 276 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFG---QKAIFSVALTFI 276 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHH---HHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988887665322222222222222222222 1111 1222333
Q ss_pred HH----HHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCc
Q 000503 522 LF----ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS 597 (1459)
Q Consensus 522 ~~----~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 597 (1459)
.| -+.++.+|.+...-.-+++.+|..|+..|...+..+.++..-++-.....+.++ + .+....|.
T Consensus 277 m~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~--~--i~~~~~~i------- 345 (591)
T KOG0057|consen 277 MVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE--D--IQEAALPI------- 345 (591)
T ss_pred HHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh--h--hhhccCCc-------
Confidence 33 245668999999999999999999999999999998888887765543332111 1 11100111
Q ss_pred ccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----
Q 000503 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672 (1459)
Q Consensus 598 ~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----- 672 (1459)
...+..|+|+|++|+|.++ +++|+++||+||+||.+||+|+|||||||++++|+++++ ++|+|.++|
T Consensus 346 --~~~~~~I~F~dV~f~y~~k-----~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~ 417 (591)
T KOG0057|consen 346 --ELFGGSIEFDDVHFSYGPK-----RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE 417 (591)
T ss_pred --ccCCCcEEEEeeEEEeCCC-----CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence 1234569999999999742 446999999999999999999999999999999999999 999999998
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCCC-CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
.||||||+..|||+||.+||.+|++. .+++..++++..++++-+..+|+|++|.+||+|..|||||||||+
T Consensus 418 ~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 418 VSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred hChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 49999999999999999999999864 566777888888999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
||||+.++|+|+++|||||+||.+|++.+++. +.+ ...+||+|+|.||++.++.+|+|+++++|++.+.|+++|++..
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~-i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~ 575 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDM-IMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP 575 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHH-HHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh
Confidence 99999999999999999999999999999998 455 6789999999999999999999999999999999999999874
Q ss_pred cc
Q 000503 824 LY 825 (1459)
Q Consensus 824 ~~ 825 (1459)
.+
T Consensus 576 s~ 577 (591)
T KOG0057|consen 576 SE 577 (591)
T ss_pred hh
Confidence 43
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-59 Score=638.69 Aligned_cols=545 Identities=19% Similarity=0.182 Sum_probs=399.6
Q ss_pred chHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 268 SLVRAICCAYGYPYIC-LGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 345 (1459)
Q Consensus 268 ~l~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 345 (1459)
+.++..+++.++.... .+++.++..++....|+.++...+... +.......+. .+.++++.++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR-LSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443322 233444555667778888876665321 1111111221 122333333344444334455566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000503 346 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSG 424 (1459)
Q Consensus 346 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~ 424 (1459)
.+.+.-..+...+|+|.++.+...++..+.|+++|+++.|++.+..... .+..+...++.++.++.++.....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999999999999999999999999987544 455555666666555544443333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1459)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1459)
++++++...+..+..+..+..++...+.++...+..+|.++|+++||.||+|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333334444444455555566666777899999999999999999999988887766554444433322223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000503 505 VFFWATTPTLFSLFTFGLFAL-MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1459)
Q Consensus 505 ~~~~~~~~~~~~~~~f~~~~~-~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1459)
.........+ .++..+.+.+ ..+.+++|.+..++.+...+..|+..+...+..+..+.+|.+||.+|++.++..+...
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 2221111111 1222233333 3567999999999999999999999999999999999999999999997654321100
Q ss_pred hhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000503 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1459)
. ...++. . -+.++.|+++|++|+|+++. +++|+|+||+|++||.++|||++|||||||+++|+|.++|
T Consensus 1271 ~-~~~~~~------~-wp~~g~I~f~nVsf~Y~~~~----~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1271 Q-ETAPPS------G-WPPRGRVEFRNYCLRYREDL----DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred c-CCCCCC------C-CCCCCcEEEEEEEEEeCCCC----cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 0 000000 0 02346799999999997532 2469999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCC
Q 000503 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1459)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 730 (1459)
++|+|.++| +|+||||+|.||+|||||||....++++++..++++.|++++.+..+|+|.+|.+||+
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 999999987 5999999999999999999983347888899999999999999999999999999999
Q ss_pred CcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. ..+++|+|+|+||++.+..||+|++|++|+
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999887766 443 567899999999999999999999999999
Q ss_pred EEEecCHHHHHhccccCc
Q 000503 811 VKWIGSSADLAVSLYSGF 828 (1459)
Q Consensus 811 i~~~g~~~~l~~~~~~~~ 828 (1459)
|++.|+|+|++++.+.+.
T Consensus 1497 IvE~G~~~eLl~~~~~f~ 1514 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQRGIFY 1514 (1522)
T ss_pred EEEECCHHHHHhCCCHHH
Confidence 999999999987654443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=597.52 Aligned_cols=200 Identities=22% Similarity=0.343 Sum_probs=164.5
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 36999999999964 45999999999999999999999999999999999999999999999741 269
Q ss_pred EEEeCCC--cCCC-ccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSP--FLFE-GSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp--~lf~-gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||++ .+.. .|+.+++.... ...++++. +.+..+|+.. ........||||||||++||||++++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLR---------DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHH---------HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999985 2433 37777763211 11122333 3344445543 34555568999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEE-EecChhHHhc
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLLQ 1444 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~Iv-E~G~p~eLl~ 1444 (1459)
|++|||||||++||..+...+.+.|++. . .|||+|||+++.+.. ||||++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999876 4 599999999999976 8999999999998 6799988743
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-58 Score=592.66 Aligned_cols=548 Identities=22% Similarity=0.277 Sum_probs=405.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 887 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSS-QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1459)
Q Consensus 887 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 965 (1459)
++.+..++..+|..+...++..+. .......+..+....+..... .+......|+...++..++..++.....+....
T Consensus 190 sl~~al~~~f~~~~~~~~~~~~~~-~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~ 268 (1381)
T KOG0054|consen 190 SLLRALLRTFGRTFLLSGIFLFLR-DLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFR 268 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344445555555554444333333 333566677776665543322 222233445556666666666666666667777
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Q 000503 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1459)
Q Consensus 966 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1459)
.+.|....+-..+++|.++.+-..-..++.|+|+|-++.|.+.+++..++....+...+-.+++...+.-...+ .+++.
T Consensus 269 ~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G 347 (1381)
T KOG0054|consen 269 VGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGP-SALAG 347 (1381)
T ss_pred hhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHH
Confidence 88888888889999999999988888899999999999999999998887766665555444333332222222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1459)
Q Consensus 1046 ~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1125 (1459)
+.+++++.-++.+..+..+..++.....+.......+|.++|+++||.|+||+.|.++..+.-+.-.+........+.+.
T Consensus 348 ~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~ 427 (1381)
T KOG0054|consen 348 VAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALN 427 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344444444444444445555556678999999999999999999999988765554333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 000503 1126 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1205 (1459)
Q Consensus 1126 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e 1205 (1459)
... ......++.++.+.+... ...+..++..+..++++.-.+..++..+......+-++.+|++|+.+|+..++.
T Consensus 428 ~~~-~~~~p~lv~~~tF~~~v~----~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 428 SFL-NFFSPVLVSVVTFVVFVL----LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHH-HHHHHHHHHHHHHHHHhh----ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 111 111222222222222110 112345677777788888888888888888888888999999999999976543
Q ss_pred ccccCCCCCCCCCCCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEEC
Q 000503 1206 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1459)
Q Consensus 1206 ~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1459)
+...... .+.-+.+..|+++|.+|+++++ .++.|+||||+|++||.+||||++|||||||+++|+|-++..+|++.++
T Consensus 503 ~~~~~~~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 503 DPDSVER-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred Ccccccc-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 3211111 1222345579999999999864 4459999999999999999999999999999999999999999999998
Q ss_pred CEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhH
Q 000503 1285 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1362 (1459)
Q Consensus 1285 G~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQ 1362 (1459)
|. ++||||.|++|+|||||||.++.+++++...++++.|+|++.++.+ |-.|+|||+|.||||||
T Consensus 582 gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 582 GS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred Ce-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 84 9999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHH-HHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhH
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~-~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~e 1441 (1459)
||||+||||+.++++|++||+|-|+||+++.+ .+.++|+...++||+|.|||.++.+..||.|+||++|+|+|.|+|+|
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHH
Confidence 99999999999999999999999999999977 55678888889999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHh
Q 000503 1442 LLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1442 Ll~~~~~~f~~l~~~ 1456 (1459)
|++. ++.|.++.++
T Consensus 729 l~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 729 LLKS-GGDFAELAHE 742 (1381)
T ss_pred HHhc-chhHHHHhhc
Confidence 9974 5688887544
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-58 Score=587.18 Aligned_cols=203 Identities=24% Similarity=0.307 Sum_probs=165.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5899999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEeCCC-cCCCc-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSP-FLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp-~lf~g-TIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
|++|++ .+++. |+++|+..... ...... ...+.+.+..+|+.. ........||||||||++||||++++|+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGR-----PRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccch-----HHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 999986 46655 99999965321 110000 011233344445542 3444556799999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe-CCeEEEe-cChhHHhc
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-HGHLVEQ-GNPQTLLQ 1444 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~-~G~IvE~-G~p~eLl~ 1444 (1459)
+|||||||++||..+.+.+.+.|++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ |++++.++
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999875 5699999999999876 89999998 8999875 78888754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=615.54 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=172.6
Q ss_pred cEEEEEEEEEecC-----------CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC--CCceEEECCEeC
Q 000503 1222 LIEFQNVTMRYKP-----------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1288 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~-----------~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--~~G~I~IDG~di 1288 (1459)
.+.|+||++.++. +...+|+|||++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999988742 123699999999999999999999999999999999999863 689999999886
Q ss_pred CCCChHHHhcccEEEeCCCcCCCc-cHHHhcCcCC------CCChHH----HHHHHHHhcHHHHHHhCCCchhhhcCC-C
Q 000503 1289 INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH------MNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESG-I 1356 (1459)
Q Consensus 1289 ~~i~~~~lR~~i~~VpQdp~lf~g-TIReNLdp~~------~~~d~e----i~~aL~~~~l~~~i~~lGLdt~v~e~G-~ 1356 (1459)
. ....|+.++||+|++.+++. |+||||.+.. ..++++ +.++++..+|.+. .|+.+|..+ .
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-----~~~~vg~~~~~ 1018 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-----KDAIVGLPGVT 1018 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-----hCCccCCCCCC
Confidence 4 34567889999999988765 9999996421 112222 3444555544432 255565433 5
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhcCEEEEEeC-Ce
Q 000503 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDH-GH 1432 (1459)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~t-i-~~~DrIlVl~~-G~ 1432 (1459)
.||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 799999999999999999999999999999999999999999998864 48999999999984 3 56899999996 89
Q ss_pred EEEecChh
Q 000503 1433 LVEQGNPQ 1440 (1459)
Q Consensus 1433 IvE~G~p~ 1440 (1459)
++++|++.
T Consensus 1099 ~v~~G~~~ 1106 (1470)
T PLN03140 1099 VIYSGPLG 1106 (1470)
T ss_pred EEEECCcc
Confidence 99999974
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=517.31 Aligned_cols=539 Identities=19% Similarity=0.228 Sum_probs=387.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 270 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1459)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (1459)
++...+ .++.++.++++.++..+....-=++-..+|..-.-... .-.-++-+++.=+..+.+++..+.-........
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334444 56666666665554443333322333333322111111 112222334444556777777666666677788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHhHHHHHHHH
Q 000503 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW-SLP-FQIGVALYLLYTQVKFAFVSGL 425 (1459)
Q Consensus 348 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~-~~p-~~i~i~~~lL~~~lg~a~l~~~ 425 (1459)
.++-+.+.-.+|+|....+......+.+|++.|.+..|++.+++...-+..-| .+. +.+++++.+-+..++.+.+.++
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 89999999999999999998888888999999999999999998654433322 222 2233334444667777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1459)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1459)
...+..+.+...+.+.-++..++..+.+..--+.+.+.+.|....+++|.++.+.+.+++.-..-.+.-++...+..+..
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555566665666666666666667778899999999999999999888776543333333333333333333
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhCCCCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 000503 506 FFWATTPTLF---SLFTFGLFALMGHQLD-AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1459)
Q Consensus 506 ~~~~~~~~~~---~~~~f~~~~~~~~~Lt-~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 581 (1459)
++..+...+. .+++++.-. -.|..+ +..+...+..|..+..-....|..+..+.+...|.+|+.+.++.++....
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~-~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~ 325 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQV-GAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF 325 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC
Confidence 3322221111 122222211 123344 33333333334433322222237778889999999999999876543221
Q ss_pred hhhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000503 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 661 (1459)
. . ... ...+..++++|++|+|+..+ .++|+|+||++++||.++|+|++|||||||++.|.|.+
T Consensus 326 ~-~-~~~-----------~~~~~~l~~~~vsF~y~~~~----~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 326 P-D-EQT-----------ATTGQALELRNVSFTYPGQQ----TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred C-c-ccc-----------CCccceeeeccceeecCCCc----cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 1 0 000 11223789999999998542 34699999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccc
Q 000503 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 727 (1459)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~i 727 (1459)
+|++|+|..+| .|++++|.+.+|++|+|||+..+++ -++|...++++..+|++-++..|+|.+|.+
T Consensus 389 ~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 99999999987 5899999999999999999999986 467888999999999999999999999999
Q ss_pred cCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEe
Q 000503 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 807 (1459)
Q Consensus 728 g~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~ 807 (1459)
||+|..||||||||+||||++.+|++++||||||.+||+.|++++++. +.. ..++||+|+||||+..++.+|+|++|+
T Consensus 469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~-~~~~kTll~vTHrL~~le~~drIivl~ 546 (573)
T COG4987 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFE-HAEGKTLLMVTHRLRGLERMDRIIVLD 546 (573)
T ss_pred ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHH-HhcCCeEEEEecccccHhhcCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 444 577999999999999999999999999
Q ss_pred CCeEEEecCHHHHHhccccCcc
Q 000503 808 KGQVKWIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 808 ~G~i~~~g~~~~l~~~~~~~~~ 829 (1459)
+|+++++|+|.+++.+++.+.+
T Consensus 547 ~Gkiie~G~~~~Ll~~~g~~~~ 568 (573)
T COG4987 547 NGKIIEEGTHAELLANNGRYKR 568 (573)
T ss_pred CCeeeecCCHHhhhccccHHHH
Confidence 9999999999999886665543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=611.24 Aligned_cols=475 Identities=18% Similarity=0.199 Sum_probs=357.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000503 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 426 (1459)
Q Consensus 348 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~ 426 (1459)
.+....+...+|++.++.+...++..+.|+++|.++.|++.+...+. .+..+....+.++.++.++.....+.+++.+.
T Consensus 1027 ~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~ 1106 (1560)
T PTZ00243 1027 RRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVP 1106 (1560)
T ss_pred HHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677889999999999999999999999999999999988544 34555555555554444433332233222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1459)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1459)
++++...+..++.+..+..++......+.-.+.++|.++|+++||.|++|+.+.++..+.-+...+...+......+...
T Consensus 1107 ~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~ 1186 (1560)
T PTZ00243 1107 CGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGV 1186 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333444455555666666677777889999999999999999999998888766544444433332222222222
Q ss_pred HHHHH--HHHHHHHHHHHH--HHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch--
Q 000503 507 FWATT--PTLFSLFTFGLF--ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH-- 580 (1459)
Q Consensus 507 ~~~~~--~~~~~~~~f~~~--~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~-- 580 (1459)
..... ...+.++.++++ ....+.++++.+..++.+...+..|+..+...+..+..+..|++||.+|++..+.++
T Consensus 1187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~ 1266 (1560)
T PTZ00243 1187 RVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMP 1266 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 11111 111112222222 223345789988888888899999999999999999999999999999996322111
Q ss_pred hhhh-------hcCCCCc------ccCC--C--cccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEE
Q 000503 581 ELEQ-------AANSPSY------ISNG--L--SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVI 643 (1459)
Q Consensus 581 ~~~~-------~~~~~~~------~~~~--~--~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~iv 643 (1459)
.... ....+.+ .... . .......+.|+|+|++|+|+++. +++|+|+||+|++||.++||
T Consensus 1267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~----~~vL~~vsf~I~~GekVaIV 1342 (1560)
T PTZ00243 1267 ELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGL----PLVLRGVSFRIAPREKVGIV 1342 (1560)
T ss_pred cccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCC----CceeecceEEECCCCEEEEE
Confidence 0000 0000000 0000 0 00011235799999999997531 23699999999999999999
Q ss_pred cCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHh
Q 000503 644 GEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC 710 (1459)
Q Consensus 644 G~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~ 710 (1459)
|++|||||||+++|+|.++|++|+|.++| .|+|+||+|.||+|||||||..+.++++++..++++.|
T Consensus 1343 GrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1343 GRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELV 1422 (1560)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHC
Confidence 99999999999999999999999999987 59999999999999999999887788999999999999
Q ss_pred cchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccC-CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEE
Q 000503 711 TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG-SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789 (1459)
Q Consensus 711 ~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~-~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~ 789 (1459)
++++.++.+|+|.+|.+||+|.+||||||||++||||++++ |+|||||||||+||+++++.|.+. +.. ..+++|+|+
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~-~~~~~TvI~ 1500 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMS-AFSAYTVIT 1500 (1560)
T ss_pred CChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HCCCCEEEE
Confidence 99999999999999999999999999999999999999996 899999999999999999988776 443 457899999
Q ss_pred EcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhc-cccCc
Q 000503 790 CTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS-LYSGF 828 (1459)
Q Consensus 790 vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~ 828 (1459)
|+||++.+..||+|++|++|+|++.|+|+|++++ .+.+.
T Consensus 1501 IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~ 1540 (1560)
T PTZ00243 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFH 1540 (1560)
T ss_pred EeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHH
Confidence 9999999999999999999999999999999864 34443
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=514.45 Aligned_cols=481 Identities=22% Similarity=0.271 Sum_probs=357.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHH-HHHHHH
Q 000503 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL-NILLAN 1023 (1459)
Q Consensus 945 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l-~~~~~~ 1023 (1459)
...+.++..++..+|...+.+.+.+.-.+++..++...+++|..--...+..+.++ |++.+...+...- .-++..
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCC
Confidence 33455667788889999999999999999999999999888876555454555544 5555544332110 000000
Q ss_pred HHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHH
Q 000503 1024 FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103 (1459)
Q Consensus 1024 ~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~ 1103 (1459)
-...+ .+.+++...||+.++.+.-.++...+...-....++--+...+....-..+..-+..+.++|+|.|......++
T Consensus 145 PW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~r 223 (580)
T COG4618 145 PWMPL-YLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKR 223 (580)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHH
Confidence 00111 12233445566655444433333222222222222222223333444456777889999999999998776666
Q ss_pred HHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 000503 1104 FKEHVVLY----QRTSYSELT---ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1176 (1459)
Q Consensus 1104 ~~~~~~~~----~~~~~~~~~---~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l 1176 (1459)
+.+....+ .++...... ..+-+-..+|.. +..+-+.+. ..+..++|.+...-........++
T Consensus 224 W~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~------iLg~GA~Lv-----i~ge~t~G~mIA~SIl~gRaLaPi 292 (580)
T COG4618 224 WGRFNAAYLSAQERASDRNGAFGALSRALRMALQSA------VLGLGAWLV-----IKGEITPGMMIAGSILSGRALAPI 292 (580)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHhcceeeE-----EcCcCCcchhhHHHHHhhhhhccH
Confidence 65544433 333322211 112111111111 111111111 134567777666555566667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEE
Q 000503 1177 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1256 (1459)
Q Consensus 1177 ~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIv 1256 (1459)
...+..|.++-.+..|..|+.++++..++.... ...| ..+|.+.++++++.=++..+|+|+|+||+++|||-+||+
T Consensus 293 d~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP---~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgII 368 (580)
T COG4618 293 DLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLP---APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGII 368 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCC---CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEE
Confidence 899999999999999999999999765543221 1111 137999999999966666678999999999999999999
Q ss_pred CCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHH
Q 000503 1257 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEK 1335 (1459)
Q Consensus 1257 GrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~ 1335 (1459)
||||||||||.++|.|..+|.+|.|.+||-|+++.+.+++=++|||.|||-.||+|||.|||.-++ +.+++.|.+|.+.
T Consensus 369 GPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~l 448 (580)
T COG4618 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARL 448 (580)
T ss_pred CCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997666 5677789999999
Q ss_pred hcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEe
Q 000503 1336 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITI 1412 (1459)
Q Consensus 1336 ~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~-~~~~TvI~I 1412 (1459)
++.+|.|-.+ ||||.|||+|..|||||||||+||||+..+|++++||||-||||.+-|+.+.++|.+. .+++|+|+|
T Consensus 449 AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvi 528 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528 (580)
T ss_pred cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999 9999999999999999999999999999999999999999999999999999998776 469999999
Q ss_pred ccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1413 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1413 aHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 529 aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999874
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=571.15 Aligned_cols=199 Identities=22% Similarity=0.332 Sum_probs=161.7
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..++++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999543 3599999999999999999999999999999999999999999999875 3479
Q ss_pred EEEeCCCcCCCccHHHhcC-c----CCCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1301 AVVPQSPFLFEGSLRDNLD-P----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLd-p----~~~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+|+||++. ...++.+|.. . +...+++++.++|+.. |++. ........||||||||++||||+++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~---------gl~~~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF---------GVTGNLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC---------CCChHHhcCCccccCHHHHHHHHHHHHHhc
Confidence 99999973 2224444421 1 1122344444444444 5542 3345566899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEE-EecChhHHh
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLL 1443 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~Iv-E~G~p~eLl 1443 (1459)
+|++|||||||++||..+.+.+.+.+++. + .|||+|||+++.+.. ||||++|++|+++ ..|++++..
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999999998888764 4 499999999999986 8999999999998 568887753
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=555.43 Aligned_cols=522 Identities=15% Similarity=0.107 Sum_probs=376.2
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 273 ICC-AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1459)
Q Consensus 273 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 351 (1459)
+++ .+++.++..+++.++..++....|.+++.+++..... .....+. +++..++..++.....+...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-GQGSLFS----FGGLCLLALLFRIGADIFPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 7788888888899999999999999999887632111 1111111 112233344555566677788899999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHH
Q 000503 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-LYTQVKFAFVSGLAITIL 430 (1459)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~l-L~~~lg~a~l~~~~v~~~ 430 (1459)
..+...+|+|.++++...+.+.++|++++.++.|++.+......+..+....+.+++++.+ ++....++.+ .++++++
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li-~l~~~~~ 164 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAI-TISAIII 164 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 9999999999999999988888999999999999999998765555555444444433333 3333222222 2222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 431 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQ--IFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1459)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~--~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1459)
.+.+..+..++..+..++..+..++..+.+.|.+.|+++||.++.++ ...+++++..++..+...+..........+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFG 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566677777888888899999999999999999999854 3333443332222222111111111111111
Q ss_pred HHHHHHHH--HHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000503 509 ATTPTLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1459)
Q Consensus 509 ~~~~~~~~--~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1459)
.....+.. .+.++. ..+.++.+.+++++.+...+..|+..+...++.+.++.+|.+||.++++.++.++......
T Consensus 245 ~~~~~~~~~~~~~~~~---~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~ 321 (555)
T TIGR01194 245 QLLFFLLIGCALFAAA---MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELS 321 (555)
T ss_pred HHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 11111111 111111 1257999999999999999999999999999999999999999999986422111000000
Q ss_pred CCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000503 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1459)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1459)
.... ............++++|++|+|+..+. ..+++|+|+||++++|++++|+||||||||||+++|+|+++|++|
T Consensus 322 ~~~~---~~~~~~~~~~~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G 397 (555)
T TIGR01194 322 DADN---VLLLAHDKSVDSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397 (555)
T ss_pred cccc---ccccccCCCCceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 0000 000000012356999999999974211 113469999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcc
Q 000503 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1459)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 733 (1459)
+|.++| .++||+|+|++|++|+++|+ ..+.++++..++++.++++++++.+|+|++|. .+
T Consensus 398 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~ 470 (555)
T TIGR01194 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470 (555)
T ss_pred EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----cc
Confidence 999986 48999999999999999996 33456778889999999999999999999984 78
Q ss_pred cCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEE
Q 000503 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813 (1459)
Q Consensus 734 LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~ 813 (1459)
||||||||++||||++++|+|+|||||||+||+++++.+.+.++.....+++|+|+||||++.+..||+|++|++|++++
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887643221235799999999999999999999999999986
Q ss_pred e
Q 000503 814 I 814 (1459)
Q Consensus 814 ~ 814 (1459)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 3
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=511.82 Aligned_cols=521 Identities=22% Similarity=0.287 Sum_probs=384.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIALGLTSI---LKSFFDTQYSFHLSKLKLKLRSSIMTIIYQK 361 (1459)
Q Consensus 286 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~g~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K 361 (1459)
++.++.-++...-|.+.+.+++.+..+.. .+......+.+.+++- +..++.+...+...++..-....+...+|+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 34445556677789999999988864211 1111122222333221 2355666666666666666677788899999
Q ss_pred HhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHH
Q 000503 362 CLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI---PVNKWI 438 (1459)
Q Consensus 362 ~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v~~~~~---~~~~~~ 438 (1459)
...++....-.+.+|+++..|...+..+.-.-..+..+-...+.+++++ .|..+..-...|+++++.+. .+...+
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~--vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAM--VYFFIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhh--hhhhhhHhHHHHHHHHHHHHHHhheeeee
Confidence 9999988776778899999997766666522223333333444455444 34444444444544433322 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 439 ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLM----KTRSSEVKHLSTRKYLDAWCVFFWATTPTL 514 (1459)
Q Consensus 439 ~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~----~~R~~El~~~~~~~~~~~~~~~~~~~~~~~ 514 (1459)
...-.++++++...-.+--..-.+.+-|-.+||.|+.|+...++.. +..++|-+.+.....+......+... .+
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gl 457 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GL 457 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HH
Confidence 3444556666655555555666788889999999999887665543 33444444433333332222221111 11
Q ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccC
Q 000503 515 FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISN 594 (1459)
Q Consensus 515 ~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1459)
....-+.+|.+..+.+++|...-+..++-.+..|++.+......++...+-++|+.+.++.++...+.. ..++
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P---~a~p---- 530 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP---GAPP---- 530 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC---CCCC----
Confidence 222234567777889999998888889999999999999999999999999999999996543221111 1111
Q ss_pred CCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--
Q 000503 595 GLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 672 (1459)
Q Consensus 595 ~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-- 672 (1459)
.....+.|+++|++|+|+++ +++|+||||+++||+.+++|||+|+||||++++|.+.++..+|+|.++|
T Consensus 531 ----l~~~~G~i~fsnvtF~Y~p~-----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd 601 (790)
T KOG0056|consen 531 ----LKVTQGKIEFSNVTFAYDPG-----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD 601 (790)
T ss_pred ----ccccCCeEEEEEeEEecCCC-----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch
Confidence 12355789999999999754 4459999999999999999999999999999999999999999999998
Q ss_pred -----------cEEEEcCCCCCCCCCHHHHhccCCCC-CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHH
Q 000503 673 -----------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1459)
Q Consensus 673 -----------~i~y~~Q~~~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 740 (1459)
+||.||||..|||.||..||.++++- ..|...++.+|++.++.|..+|+|++|.|||+|-.||||+||
T Consensus 602 Irnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 602 IRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred HHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence 59999999999999999999999863 445666788999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHH
Q 000503 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 741 RvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
|||+||++.++|.|++|||+|||||.++++.|-.. +.. +..++|.|+|.||++.+-+||.|+++++|+|+|.|+|+|+
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa-L~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAA-LAR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEEL 759 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH-HHH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHH
Confidence 99999999999999999999999999999988654 433 6789999999999999999999999999999999999999
Q ss_pred Hhc-cccCc
Q 000503 821 AVS-LYSGF 828 (1459)
Q Consensus 821 ~~~-~~~~~ 828 (1459)
... ++.+.
T Consensus 760 l~rdgG~Ya 768 (790)
T KOG0056|consen 760 LKRDGGAYA 768 (790)
T ss_pred HhccCCcHH
Confidence 876 44443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-56 Score=540.08 Aligned_cols=484 Identities=23% Similarity=0.308 Sum_probs=336.6
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--cEEEEcCCCC
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 682 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~~~ 682 (1459)
.+.++|++.++.. +++++|+||++.+|+.++|||+|||||||||++|.|+..|++|+|...+ ++||++|+|.
T Consensus 3 ~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 4678899998842 3459999999999999999999999999999999999999999999986 7999999999
Q ss_pred CCCC-CHHHHhccCCCC-C--HHHHHHHH---------------------HHhcchhhHhhccCC--CcccccCCCcccC
Q 000503 683 ILSG-TIRDNILFGKNY-D--PQSYSETL---------------------KACTLDVDISLMVGG--DMAYIGEKGVNLS 735 (1459)
Q Consensus 683 l~~~-ti~~nI~~g~~~-~--~~~~~~v~---------------------~~~~l~~di~~~~~g--d~t~ig~~g~~LS 735 (1459)
.... ||+|.+.-+... . ..+|+++. ....++.+++..-.| .... ...-.+||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 9865 999999876421 0 01111111 111222233322222 1111 34557899
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEE-E
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK-W 813 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~-~ 813 (1459)
||||.||+|||||..+||+|||||||++||..+..|+-+.+ . ..+| |+|+|||+.++|.. |++|+.+++|++. +
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L-~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL-K--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 99999999999999999999999999999999999998873 2 2345 99999999999997 9999999999765 6
Q ss_pred ecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHH
Q 000503 814 IGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYA 893 (1459)
Q Consensus 814 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 893 (1459)
.|+|+...+..... . . .+ .. ..+..+++.++
T Consensus 232 ~Gny~~~~~~r~~~----------~---~-----------~~----~~--------~~~~~~~~~~~------------- 262 (530)
T COG0488 232 KGNYSSYLEQKAER----------L---R-----------QE----AA--------AYEKQQKELAK------------- 262 (530)
T ss_pred cCCHHHHHHHHHHH----------H---H-----------HH----HH--------HHHHHHHHHHH-------------
Confidence 67777664321000 0 0 00 00 00000000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 894 KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 973 (1459)
Q Consensus 894 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1459)
+..|+.
T Consensus 263 ----------------------------~~~~i~---------------------------------------------- 268 (530)
T COG0488 263 ----------------------------EQEWIR---------------------------------------------- 268 (530)
T ss_pred ----------------------------HHHHHH----------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000503 974 VHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYS 1053 (1459)
Q Consensus 974 lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~ 1053 (1459)
|+.
T Consensus 269 ---------------------------r~~-------------------------------------------------- 271 (530)
T COG0488 269 ---------------------------RGK-------------------------------------------------- 271 (530)
T ss_pred ---------------------------HHH--------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1054 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLA 1133 (1459)
Q Consensus 1054 ~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~ 1133 (1459)
...+++++.
T Consensus 272 ----~~~~~~k~a------------------------------------------------------------------- 280 (530)
T COG0488 272 ----AAASKAKKA------------------------------------------------------------------- 280 (530)
T ss_pred ----hccchHHHH-------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCccccc-c-
Q 000503 1134 AFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY--MDVPQEELC-G- 1209 (1459)
Q Consensus 1134 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~--~~~~~e~~~-~- 1209 (1459)
+......+++.+- ...|.+... .
T Consensus 281 -----------------------------------------------------~sr~k~l~k~~~~~~~~~~~~~~~~~~ 307 (530)
T COG0488 281 -----------------------------------------------------KSRIKRLEKLEARLAEERPVEEGKPLA 307 (530)
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhhhhcccccccccce
Confidence 0000011111100 000000000 0
Q ss_pred -CCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeC
Q 000503 1210 -YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288 (1459)
Q Consensus 1210 -~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1288 (1459)
...+++.-..+-.++++|+++.|.++ .++++++||.|++|++|||+||||+|||||+++|.|-..|.+|+|.+.-
T Consensus 308 ~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~--- 383 (530)
T COG0488 308 FRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE--- 383 (530)
T ss_pred eeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC---
Confidence 00011101224469999999999765 5799999999999999999999999999999999999999999998753
Q ss_pred CCCChHHHhcccEEEeCCC-cCCC-ccHHHhcCcCCCC-ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1289 INTPVRDLRGRFAVVPQSP-FLFE-GSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1289 ~~i~~~~lR~~i~~VpQdp-~lf~-gTIReNLdp~~~~-~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
.-++||.+|+- .+++ .|+-|++....+. .+.++...|.+.++... .+......||||||-|
T Consensus 384 --------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~--------~~~~~v~~LSGGEk~R 447 (530)
T COG0488 384 --------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE--------DQEKPVGVLSGGEKAR 447 (530)
T ss_pred --------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH--------HHhCchhhcCHhHHHH
Confidence 12699999998 3343 3788888654422 35666666666554321 1223334699999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEe-cChhHHh
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ-GNPQTLL 1443 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~-G~p~eLl 1443 (1459)
+.||+.++.+|++|||||||.+||.+|.+.+.++|.++ + -|||+|||+.+.+.. |++|+++++ ++.++ |++++..
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~-Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-E-GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 99999999999999999999999999999999999764 4 499999999999987 799999999 88887 8998887
Q ss_pred ccC
Q 000503 1444 QDE 1446 (1459)
Q Consensus 1444 ~~~ 1446 (1459)
+..
T Consensus 525 ~~~ 527 (530)
T COG0488 525 EQK 527 (530)
T ss_pred Hhh
Confidence 643
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=557.98 Aligned_cols=191 Identities=21% Similarity=0.307 Sum_probs=161.1
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEeCCCcC-CCccHHHhcCcCC-CCC-hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1302 VVPQSPFL-FEGSLRDNLDPFH-MND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~VpQdp~l-f~gTIReNLdp~~-~~~-d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
|+||++.+ ++.|+++|+.... ... +... .+.++.+|++.........||||||||++|||||+++|+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYK---------SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHH---------HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999875 4569999986431 111 1122 3344445666555666678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
|||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||||++|++ ++...|+
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999998864 37899999999999876 899999964 8877766
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=552.08 Aligned_cols=513 Identities=15% Similarity=0.124 Sum_probs=386.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 900 ITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYST----SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975 (1459)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~----~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh 975 (1459)
.+++.+++.++...+....+++.+...+.....+ .... ..++.+++++.++..+..++..++......+...++|
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~-~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS-PRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666667777776665421111 1111 1223333444445555555555666667777888888
Q ss_pred HHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 000503 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSK 1054 (1459)
Q Consensus 976 ~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~pl~~~~~~ 1054 (1459)
++.+++....++.|||. ++|++.+|+++|++.+.+.+...+..++..++.+++..+.+.. .+|.+.++++...++...
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 88888888888899987 7899999999999999999988888888888888776666554 566555555444445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1134 (1459)
Q Consensus 1055 ~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 1134 (1459)
+.+++.+..+++.+......+.+.+.+.|.++|+++||+|+.|+.+.+++.+..++..+..........++....+++..
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666666666666666777788899999999999999999999999999999998888888877777777766666543
Q ss_pred HH---HHHHHH-HHHHhhcCCCCCCCchHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 000503 1135 FI---ISFIAT-MAVIGSRGNLPATFSTPGL-VGLALSY---AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1206 (1459)
Q Consensus 1135 ~~---~~~~~~-~~v~~~~~~~~~~~~~~g~-vgl~l~~---~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~ 1206 (1459)
.. +..+.. ..++...+ ...+..+.|. ++..+.| +..+..++..+...+.++....++.+|+.++.+.++|.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~-~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTH-PAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHHhccc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111 11111110 0012334443 3323333 55668888999999999999999999999999764432
Q ss_pred cc--------cC-CC-------C------CCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHH
Q 000503 1207 LC--------GY-QS-------L------SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1264 (1459)
Q Consensus 1207 ~~--------~~-~~-------~------~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKS 1264 (1459)
.. .. .. . .......+.|+++||+++|+++ +++|+|+||+|++||++||+||||||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKS 492 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKS 492 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHH
Confidence 10 00 00 0 0001134679999999999643 4699999999999999999999999999
Q ss_pred HHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCC--------CCChHHHHHHHHHh
Q 000503 1265 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH--------MNDDLKIWSVLEKC 1336 (1459)
Q Consensus 1265 TLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~--------~~~d~ei~~aL~~~ 1336 (1459)
||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|||+.... ..++++++++++.+
T Consensus 493 TLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 561 (659)
T TIGR00954 493 SLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNV 561 (659)
T ss_pred HHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHc
Confidence 999999999999999999874 67899999999999999999997532 24678899999999
Q ss_pred cHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q 000503 1337 HVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1415 (1459)
Q Consensus 1337 ~l~~~i~~l-GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHr 1415 (1459)
++.+.++.- |+|+..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||
T Consensus 562 ~l~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~ 638 (659)
T TIGR00954 562 QLTHILEREGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638 (659)
T ss_pred CCHHHHhhcCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCc
Confidence 999988766 9999876 46699999999999999999999999999999999999999999999874 8999999999
Q ss_pred hhhHhhcCEEEEEeC
Q 000503 1416 ISTVLNMDEILILDH 1430 (1459)
Q Consensus 1416 l~ti~~~DrIlVl~~ 1430 (1459)
++++..||+|++|+.
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999999999999973
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=582.53 Aligned_cols=539 Identities=17% Similarity=0.242 Sum_probs=386.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 887 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTK--YSTSFYLVVLCIFCMFNSFLTLVRAFSFA 964 (1459)
Q Consensus 887 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 964 (1459)
+..+..++..+|..+... +..++..++...+++.+....+........ .....|++.++++.++..++.....+...
T Consensus 69 ~L~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 147 (1490)
T TIGR01271 69 KLLNALRRCFFWRFVFYG-ILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLH 147 (1490)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544433 234455566667777776655442111111 11223344444445555556555666666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHH
Q 000503 965 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044 (1459)
Q Consensus 965 ~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1044 (1459)
..+.+....+...+++++++.+...+++.++|+++|++++|++.++..+..... +....+.+++.++++.....+..++
T Consensus 148 ~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~-~~~~pi~i~~~~~lL~~~~G~~~l~ 226 (1490)
T TIGR01271 148 HLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHF-VWIAPLQVILLMGLIWELLEVNGFC 226 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888889999999999999999999999999999999987665433 3233333333344443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1124 (1459)
Q Consensus 1045 ~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w 1124 (1459)
.+.+++++..++.+..+.....++..........+...|.++|+++||.|+||+.|.+++.+..+...+..........|
T Consensus 227 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~ 306 (1490)
T TIGR01271 227 GLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF 306 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444555555556667778999999999999999999999988887666554444333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000503 1125 LSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL-GNFLSSFTETEKEMVSLERVLEYMDVP 1203 (1459)
Q Consensus 1125 l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l-~~l~~~~~~~e~~~~s~~Ri~~~~~~~ 1203 (1459)
..... .....++.++.+. .+... +..+++.+..++++...+..++ ..+...+..+.++.+|++||.+|++.+
T Consensus 307 ~~~~~-~~~~~~~~~~~f~-~y~~~-----~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~ 379 (1490)
T TIGR01271 307 YSSAF-FFSGFFVVFLSVV-PYALI-----KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKE 379 (1490)
T ss_pred HHHHH-HHHHHHHHHHHHH-HHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 21111 1111111111111 11111 1123555555566665555554 457777888888999999999999765
Q ss_pred ccccccCCCCCCCCCCCccEEEEEEEEEecCC--------------------------------CCccceeeeEEEeCCc
Q 000503 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS--------------------------------LPAALHDINFTIEGGT 1251 (1459)
Q Consensus 1204 ~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~--------------------------------~~~vL~~isl~I~~Ge 1251 (1459)
+.+.... . +....|+++|++|.|+.. .+++|+|+||+|++||
T Consensus 380 e~~~~~~-----~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~ 453 (1490)
T TIGR01271 380 EYKTLEY-----N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQ 453 (1490)
T ss_pred ccccccc-----c-CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCC
Confidence 4321110 0 112358888888888421 1358999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHH
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331 (1459)
Q Consensus 1252 kvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~ 1331 (1459)
+++|+||+|||||||+++|+|+++|++|+|.+|| +++||||+|++|++||||||.++..+++++..+
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 520 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS 520 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence 9999999999999999999999999999999998 599999999999999999998776666677888
Q ss_pred HHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHH-HHHHhcCCcE
Q 000503 1332 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN-AISSECKGMT 1408 (1459)
Q Consensus 1332 aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~-~I~~~~~~~T 1408 (1459)
+++.|++.+.++.+ |.+|.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+ ++++..+++|
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t 600 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999988 89999999999999999999999999999999999999999999999999987 5677778999
Q ss_pred EEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1409 VITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1409 vI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
+|+|||+++.+..||+|++|++|++++.|+|+++.+.. +.|.+.+
T Consensus 601 vilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 99999999999999999999999999999999998753 4566655
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=532.75 Aligned_cols=508 Identities=17% Similarity=0.155 Sum_probs=363.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAG-PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1459)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (1459)
+++.+++.+++.++...++.++..++.+.. |++.+.++|.+.. .......+++.+++. .++.....+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT--SLLVLPEFLGLLLLL----MAVTLGSQLALTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 566778888888888888889888888874 7788888886532 111111111111111 223344556667778
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000503 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1459)
Q Consensus 348 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v 427 (1459)
.++...+...+|+|.++++...+++.++|++++.++.|++.+......+..++...+.+++++++++..-...+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888899999999999999988888999999999999999987655666777777776666655544333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1459)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g--~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1459)
+++...+..++.++..+..++.++..++..+.+.|.++|++++++.+ .++.+.++..+..++-.+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 44445566777888888888999999999999999999999997433 2234444444433222222112221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh
Q 000503 506 FFWATTPTLFSLFTFGLFALMGH---QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1459)
Q Consensus 506 ~~~~~~~~~~~~~~f~~~~~~~~---~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 582 (1459)
.+.. +...+.++.+.+.++ ..+.+.+.+...+...+..|+..+...++.+.++..+++||.+++..++..+..
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSN----IMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111 111111222222221 122222222222333467899999999999999999999999998544321100
Q ss_pred hhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc
Q 000503 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~ 662 (1459)
. .+. .+....++++|++|+|+.+ . ++|+|+||++++|+.++|+||||||||||+++|+|+++
T Consensus 313 -~---~~~---------~~~~~~i~~~~v~f~y~~~--~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 313 -R---PQA---------FPDWQTLELRNVTFAYQDN--G---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred -c---ccc---------cCcCceEEEEEEEEEeCCC--C---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 000 0112469999999999732 2 35999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccC
Q 000503 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1459)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~ 729 (1459)
|++|+|.++| .++|++|+|++|++|++|| +...+++..+++++.+++..++.. ++|. .
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~ 445 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----I 445 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----C
Confidence 9999999876 5999999999999999999 455677788888888888776652 3331 2
Q ss_pred CCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhcCCEEEEEeC
Q 000503 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~~d~i~~l~~ 808 (1459)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ .... .+++|+|+|||+++.+..||+|++|++
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l-~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL-LPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 48899999999999999999999999999999999999999888763 2212 247899999999999999999999999
Q ss_pred CeEEEe
Q 000503 809 GQVKWI 814 (1459)
Q Consensus 809 G~i~~~ 814 (1459)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=503.56 Aligned_cols=442 Identities=25% Similarity=0.349 Sum_probs=333.8
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|.+=+|+. .++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 45778898888763 2459999999999999999999999999999999999999999999987
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCCC-------CHHHH----HHHHHHhcchhhHhhccCCCcccccCCCcccCcH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKNY-------DPQSY----SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~~-------~~~~~----~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 737 (1459)
.|+.|.|++-|+. -||.|||.+|++. |..+. +++++..++..| ......+||+|
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~Lsia 149 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIA 149 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHH
Confidence 4999999999875 5999999888653 32322 223333332211 23344589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecC
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 738 QkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1459)
|||-|+||||++.+++|+|||||||+|+.+..+++|+. +.....+|.++|+|||+++.+.. ||+|.||+||+.+..++
T Consensus 150 qrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999986 44435678999999999998765 99999999999875432
Q ss_pred H-HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhh
Q 000503 817 S-ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF 895 (1459)
Q Consensus 817 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~ 895 (1459)
. .++ +.++. +.
T Consensus 229 ~~~~~------------------------------------------------~~~~l----------v~---------- 240 (500)
T COG1129 229 TAAET------------------------------------------------SEDEL----------VR---------- 240 (500)
T ss_pred cccCC------------------------------------------------CHHHH----------HH----------
Confidence 1 100 00000 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 896 SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975 (1459)
Q Consensus 896 ~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh 975 (1459)
++
T Consensus 241 -----------------------------~M------------------------------------------------- 242 (500)
T COG1129 241 -----------------------------LM------------------------------------------------- 242 (500)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL 1055 (1459)
Q Consensus 976 ~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~ 1055 (1459)
.|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1056 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1135 (1459)
Q Consensus 1056 ~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~ 1135 (1459)
|++
T Consensus 245 --------r~~--------------------------------------------------------------------- 247 (500)
T COG1129 245 --------REL--------------------------------------------------------------------- 247 (500)
T ss_pred --------cch---------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCC
Q 000503 1136 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1215 (1459)
Q Consensus 1136 ~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~ 1215 (1459)
.+..++. +.
T Consensus 248 ----------------------------------------------------------------~~~~~~~-------~~ 256 (500)
T COG1129 248 ----------------------------------------------------------------EDLFPEP-------PE 256 (500)
T ss_pred ----------------------------------------------------------------hhhcccc-------cc
Confidence 0000000 00
Q ss_pred CCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC-hH
Q 000503 1216 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VR 1294 (1459)
Q Consensus 1216 ~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~ 1294 (1459)
.-+..-.++++|++.. ..++|+||++++||.+||.|--|||+|-++.+|+|..++.+|+|.+||.++.--+ .+
T Consensus 257 ~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 257 EGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred cCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 0001123667777642 2588999999999999999999999999999999999999999999999887654 55
Q ss_pred HHhcccEEEeCCCc---CC-CccHHHhcCcCC--CCChH-HHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPF---LF-EGSLRDNLDPFH--MNDDL-KIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~---lf-~gTIReNLdp~~--~~~d~-ei~~aL~~~~l~~~i~~lGLdt~-v~e~G~~LSgGQrQrl 1366 (1459)
..+..|+|||-|-- +| ..+|++|+.... .+... -+...-++.-..+.++.++..+. ....-.+||||.+|++
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV 410 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV 410 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH
Confidence 88889999999874 44 559999996431 11100 23334444455666776633332 1122337999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hcCEEEEEeCCeEEEecChhH
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlVl~~G~IvE~G~p~e 1441 (1459)
+|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++++. -||||+||.+|+++..=+.++
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999875 5899999999999988 599999999999987544443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=514.67 Aligned_cols=516 Identities=16% Similarity=0.171 Sum_probs=376.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 280 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1459)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy 359 (1459)
.++..+++.++.+++....|++.+.+++.+.+.+.... ...++.++++.++.+++.....|...++..++|..+...++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f-~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNF-AWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888889999999999999998764322111 10111122223333344444444555566666666666666
Q ss_pred HHHhcC----CccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Q 000503 360 QKCLYV----RLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAF-VSGLAITILLIP 433 (1459)
Q Consensus 360 ~K~L~l----~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~-l~~~~v~~~~~~ 433 (1459)
++.++. +...+++ ..|++.+.+++|++.+.+... .+..+...++.++.+++.++..+++.. ++.++.+++...
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 665543 3333333 579999999999999987554 466666777777777777776566643 333344455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000503 434 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP- 512 (1459)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~- 512 (1459)
+..++.+++.+..++..+..++-.+..+|.++|+++||+|+.|+...+++++.-++-.+...+.....+....+.....
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6777888889999999999999999999999999999999999998888877666666666665555554444332222
Q ss_pred ---HHHHHHHHHHHHHh-C----CCCCHhHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch
Q 000503 513 ---TLFSLFTFGLFALM-G----HQLDAAMVFT-C---LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH 580 (1459)
Q Consensus 513 ---~~~~~~~f~~~~~~-~----~~Lt~~~~ft-~---l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 580 (1459)
..+..+..+...+. . +.+|.+..+. . ..++..+..|+..+...+..+.++.++.+||.++++.++..+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222223332222 2 5788887554 2 334677799999999999999999999999999996432110
Q ss_pred hhh-hhcCCCC-----------cccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCC
Q 000503 581 ELE-QAANSPS-----------YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGS 648 (1459)
Q Consensus 581 ~~~-~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 648 (1459)
... .....+. ....+..........++++|++|.|+.+ +++|+|+||++++||.++|+|||||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-----~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 415 SGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-----DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred cccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-----CeeeecceEEECCCCEEEEECCCCC
Confidence 000 0000000 0000000011123469999999988632 2359999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCeEEEEcC--cEEEEcCCCCCCCCCHHHHhccCC--------CCCHHHHHHHHHHhcchhhHhh
Q 000503 649 GKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISL 718 (1459)
Q Consensus 649 GKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~~~l~~~ti~~nI~~g~--------~~~~~~~~~v~~~~~l~~di~~ 718 (1459)
|||||+++|+|+++|++|+|.+++ .++||+|+|+++++|++|||.++. ..++++..++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2455677889999999887776
Q ss_pred ccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh
Q 000503 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798 (1459)
Q Consensus 719 ~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~ 798 (1459)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ .. .++|+|++||+++.++
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~---~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE---FGITLFSVSHRKSLWK 643 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH---cCCEEEEEeCchHHHH
Confidence 999999876 56799999999999999999999999999999999999999988763 22 3789999999999999
Q ss_pred cCCEEEEEeC
Q 000503 799 AADMVVVMDK 808 (1459)
Q Consensus 799 ~~d~i~~l~~ 808 (1459)
.||+|++|+.
T Consensus 644 ~~d~il~l~~ 653 (659)
T TIGR00954 644 YHEYLLYMDG 653 (659)
T ss_pred hCCEEEEEeC
Confidence 9999999973
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=458.64 Aligned_cols=466 Identities=20% Similarity=0.253 Sum_probs=356.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000503 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1459)
Q Consensus 347 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~ 425 (1459)
+......+.-..|.|++.|+.....+..+|.+..-+.--..-|....++ +..+....++++++..++++..||......
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 3334445666788999999887766666776655554444455554433 344555678899999999999998776655
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 426 AITILLIPVNKWIA-NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1459)
Q Consensus 426 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1459)
++.+++..+-.+.. ..-...+++..++-.+......+.|-+-.++|.||-|+.+..+.....+..-+...|......+.
T Consensus 90 ~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~L 169 (497)
T COG5265 90 LVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVL 169 (497)
T ss_pred HHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHH
Confidence 55555443333322 22233344444444455666779999999999999999888887665544333332222222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh
Q 000503 505 VFFWAT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1459)
Q Consensus 505 ~~~~~~--~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 582 (1459)
++.... ...+....+.+...+..+.+|.+...-.-++...+..|++.+......+-+++...++..+.+..+-.....
T Consensus 170 n~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~ 249 (497)
T COG5265 170 NFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA 249 (497)
T ss_pred HHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC
Confidence 211110 111122233444456678999999999999999999999999999999999999999998888543221110
Q ss_pred hhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc
Q 000503 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~ 662 (1459)
. ..++. .......+.|++++|.|.++ +++|+++||++++|+.++|||++|+||||++++|.+.|+
T Consensus 250 p---da~~L-------~~~~~g~v~F~~V~F~y~~~-----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 250 P---DAPPL-------WPVRLGAVAFINVSFAYDPR-----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred C---CCccc-------cccccceEEEEEEEeecccc-----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 0 01110 00234679999999999754 455999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCccccc
Q 000503 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1459)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig 728 (1459)
+++|.|.++| .||.|||+..|||.|+..||.+|++ ..++...++.++.++.+.|+.+|+|++|.||
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 9999999987 4999999999999999999999986 4567788899999999999999999999999
Q ss_pred CCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeC
Q 000503 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~ 808 (1459)
|+|-.||||+|||||+||++.++|+|++|||+|||||.+|++.|... +.. ..+|+|.+++.||++.+-.||+|++|++
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~-l~~-~~~~rttlviahrlsti~~adeiivl~~ 472 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA-LRE-VSAGRTTLVIAHRLSTIIDADEIIVLDN 472 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHH-HhCCCeEEEEeehhhhccCCceEEEeeC
Confidence 99999999999999999999999999999999999999999998776 433 5689999999999999999999999999
Q ss_pred CeEEEecCHHHHHhccccCcc
Q 000503 809 GQVKWIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 809 G~i~~~g~~~~l~~~~~~~~~ 829 (1459)
|+|+|.|+|+|++..++.+.+
T Consensus 473 g~i~erg~h~~ll~~~g~ya~ 493 (497)
T COG5265 473 GRIVERGTHEELLAAGGLYAE 493 (497)
T ss_pred CEEEecCcHHHHHHcCChHHH
Confidence 999999999999988766543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=476.13 Aligned_cols=236 Identities=34% Similarity=0.623 Sum_probs=225.6
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||.|+.+++...+|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||||+|.+|++|+++|++++...++++++++++.+++.+.++.+ ++++.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999988777889999999999999999987 999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~~g 1458 (1459)
|||||||++||+++++.+++.|++.++++|||+||||++++..||||++|++|+++|.|+|++|++++ +.|++++++++
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHHHhhcc
Confidence 99999999999999999999999888899999999999999999999999999999999999999964 79999998765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=469.40 Aligned_cols=442 Identities=26% Similarity=0.381 Sum_probs=343.0
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..+++++.+-.|+. -.+++||||++++||+.++.|.||+|||||++.|.|.|+|++|+|.++|
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 35788888888762 3459999999999999999999999999999999999999999999998
Q ss_pred ---cEEEEcCCCCCCCC-CHHHHhccCCCC------C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY------D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~-ti~~nI~~g~~~------~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.||.|.|++-|+.. ||.|||..|.+- | .++.++..+.++|+-|.+ ++...||=|+
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~ 145 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGE 145 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcch
Confidence 49999999998866 999999998753 2 345667777777776654 3455899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCH
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1459)
||||.|-+|||++|++||||||||.|-|...+++|+. +......|+|||+|||+++.+.. ||++-||++|+++..-+
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~- 223 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD- 223 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec-
Confidence 9999999999999999999999999999999999987 33335679999999999999876 99999999999753211
Q ss_pred HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhhhHHHHHhcccchHHHHHHHHhhhh
Q 000503 818 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1459)
Q Consensus 818 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1459)
.. . +. +.+++
T Consensus 224 -~~-----------~---------------------------~~-------t~~el------------------------ 233 (501)
T COG3845 224 -PV-----------A---------------------------ET-------TEEEL------------------------ 233 (501)
T ss_pred -CC-----------C---------------------------CC-------CHHHH------------------------
Confidence 00 0 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1459)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 977 (1459)
.
T Consensus 234 ---------a---------------------------------------------------------------------- 234 (501)
T COG3845 234 ---------A---------------------------------------------------------------------- 234 (501)
T ss_pred ---------H----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1459)
Q Consensus 978 ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~ 1057 (1459)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T COG3845 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137 (1459)
Q Consensus 1058 ~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1137 (1459)
++
T Consensus 235 ----------~l-------------------------------------------------------------------- 236 (501)
T COG3845 235 ----------EL-------------------------------------------------------------------- 236 (501)
T ss_pred ----------HH--------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCC
Q 000503 1138 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217 (1459)
Q Consensus 1138 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~w 1217 (1459)
.+ + .... .+.+ .++.-
T Consensus 237 ------Mv-G--~~v~------------------------------------------------~~~~-------~~~~~ 252 (501)
T COG3845 237 ------MV-G--REVV------------------------------------------------LRVV-------KPPST 252 (501)
T ss_pred ------hc-C--Cccc------------------------------------------------cccc-------cCCCC
Confidence 00 0 0000 0000 00111
Q ss_pred CCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeC-CCCChHHH
Q 000503 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDL 1296 (1459)
Q Consensus 1218 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di-~~i~~~~l 1296 (1459)
|..-.++++|++..-+.+ -+.+++|||+|++||.+||.|-.|-|-+-|+.+|.|+..|.+|+|.++|.|+ ...+....
T Consensus 253 pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 233468999999865433 3579999999999999999999999999999999999999999999999997 66677776
Q ss_pred hc-ccEEEeCCCc----CCCccHHHhcCcCCCCCh-----H-HHHHHHHHhcHHHHHHhC-----CCchhhhcCCCCCCh
Q 000503 1297 RG-RFAVVPQSPF----LFEGSLRDNLDPFHMNDD-----L-KIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSV 1360 (1459)
Q Consensus 1297 R~-~i~~VpQdp~----lf~gTIReNLdp~~~~~d-----~-ei~~aL~~~~l~~~i~~l-----GLdt~v~e~G~~LSg 1360 (1459)
|+ .+++||.|.. ..+-|+.||+-+.....+ - -=|++.++ ...+.++.+ +.+++ ..+|||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-~a~~li~~fdVr~~~~~~~----a~~LSG 406 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAP----ARSLSG 406 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-HHHHHHHHcCccCCCCCcc----hhhcCC
Confidence 65 5999999984 456699999854322111 0 00112211 123445544 33333 347999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
|+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-.|+.+.. ||||.||.+|+++...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999887764 69999999999999876 89999999999998887
Q ss_pred hhH
Q 000503 1439 PQT 1441 (1459)
Q Consensus 1439 p~e 1441 (1459)
|++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 776
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=458.25 Aligned_cols=229 Identities=27% Similarity=0.390 Sum_probs=204.6
Q ss_pred CCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCC
Q 000503 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNII 1289 (1459)
Q Consensus 1215 ~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~ 1289 (1459)
.+||..+.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+|+.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999999999997555679999999999999999999999999999999999997 57999999999997
Q ss_pred --CCChHHHhcccEEEeCCCcCCCccHHHhcCcC---CCCChHHH-----HHHHHHhcHHHHHHhCCCchhhhcCCCCCC
Q 000503 1290 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKI-----WSVLEKCHVKEEVEAVGLETFVKESGISFS 1359 (1459)
Q Consensus 1290 --~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~---~~~~d~ei-----~~aL~~~~l~~~i~~lGLdt~v~e~G~~LS 1359 (1459)
.++...+|++++||||+|.+|++|+++|+++. ...++++. .++++.+++++ ++++.+++.|.+||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~l~~~~~~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-----EVKDDLDKAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-----hhhhhhhCCcccCC
Confidence 45667899999999999999999999999843 22444444 34455555433 45678899999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999889999999999999998 99999999999999999
Q ss_pred hhHHhccCCc
Q 000503 1439 PQTLLQDECS 1448 (1459)
Q Consensus 1439 p~eLl~~~~~ 1448 (1459)
|+++..++..
T Consensus 308 ~~~l~~~~~~ 317 (329)
T PRK14257 308 TKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCCc
Confidence 9999987653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=385.81 Aligned_cols=220 Identities=28% Similarity=0.434 Sum_probs=190.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCC-CCChHHHhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1300 (1459)
-|+++||+.+|.+. .||||||++|++||++.||||||||||||+++|.++-+|++|+|.+||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 5999999999999999999999999999999999999999999999998774 34789999999
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
|+|+|+.-||+- |+-||+.... ..+.+|..+ + ..+.++..||......-..+|||||+||++|||||.-+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~---~--A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE---K--ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHH---H--HHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 999999999986 9999986432 122222111 1 11233444666666677789999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1448 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~ 1448 (1459)
|+|+++|||||+||+|.-..+.+++++.. .|.|.|+|||.+...++ +|||+.||+|+|+|.|+|+++..++..
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 99999999999999999999999998875 58899999999999998 699999999999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=399.64 Aligned_cols=221 Identities=29% Similarity=0.440 Sum_probs=191.7
Q ss_pred EEEEEEEEEecCC---CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC---hHHH
Q 000503 1223 IEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDL 1296 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~l 1296 (1459)
|+++||++.|... ...+|+||||+|++||+.||+|+||||||||++++-++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999763 246899999999999999999999999999999999999999999999998887776 5566
Q ss_pred hcccEEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1297 RGRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1297 R~~i~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
|++|++|+|++-|++ -|+.+|+.+-- ..+.+|+.+ ...+.++-.||....+.-..+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~-----RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ-----RVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHH-----HHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 789999999999998 69999996431 233444322 122333333888778888889999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1448 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~ 1448 (1459)
..+|+||+.|||||+||++|-+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+..|+..+|..
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 99999999999999999999999999987653 38899999999999998 999999999999999999999998853
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=375.72 Aligned_cols=220 Identities=30% Similarity=0.430 Sum_probs=200.1
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCC-----ceEEECCEeCCC--CCh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIIN--TPV 1293 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~-----G~I~IDG~di~~--i~~ 1293 (1459)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 35899999999974 459999999999999999999999999999999999999876 999999999976 679
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCCC----C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~~----~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
-.+|+++|+|.|.|--|+.||+||+.++-. . -|+-+.++|+++.||+.++. .+.+.+..|||||+|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCCChhHHHHH
Confidence 999999999999999999999999976522 1 24557889999999998864 45566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||||||.-+|+||+||||||+||+.+...|.+.|.+..++-||++|||.+.-... +|+...+-.|+++|+|+-+++..+
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 9999999999999999999999999999999999999899999999999998766 699999999999999999999987
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
|.
T Consensus 239 P~ 240 (253)
T COG1117 239 PK 240 (253)
T ss_pred cc
Confidence 75
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=406.35 Aligned_cols=238 Identities=44% Similarity=0.744 Sum_probs=221.3
Q ss_pred CCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhc
Q 000503 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298 (1459)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1298 (1459)
..|.|+++|++++|+....++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754356999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.++.+ |+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876544556788889999999988888 9999999999999999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~ 1456 (1459)
++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.+++.|+.++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999988777899999999999999999999999999999999999998877889988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=412.18 Aligned_cols=196 Identities=24% Similarity=0.326 Sum_probs=157.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|.|+||+|+|+++ +..++++||-|.++++|++|||||+|||||++++.+.+.|..|.|.-.-. -+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 48999999999765 47999999999999999999999999999999999999999999864321 2333
Q ss_pred EEeCCC---cCCCccHHHhcCcC-C-CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSP---FLFEGSLRDNLDPF-H-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp---~lf~gTIReNLdp~-~-~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+-.|.- .-++-|.-+|+.|- . ....+++...|.++||.... .+.++ .+||+|||.|+++||.+++.|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~----q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA----QVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc----cccch----hhcccccchhHHHHHHHhcCC
Confidence 334433 34566777776543 2 23456777788888765321 22223 379999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEe-cCh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ-GNP 1439 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~-G~p 1439 (1459)
.||+|||||++||.+|-....++|.++ ..+||+|+|+...|.. +++|.+.++|.+... |..
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999764 3489999999999987 799999999998754 444
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=378.23 Aligned_cols=223 Identities=31% Similarity=0.476 Sum_probs=194.5
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt--~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|-|.--||+. ||.||+..-. ..+.+++.+- ..+.++..|||. ....-...|||||+||+.+||||..+|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 9999999986 9999985322 2344444322 334444448875 345567789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHH
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~ 1452 (1459)
+|++||||.++||+-|...+|+-+.+..+ ++|+|+|||++++... +|||.||++|+|+.+|+|++++++|...|-+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 99999999999999999999998876533 8999999999998655 8999999999999999999999998766643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=394.46 Aligned_cols=232 Identities=35% Similarity=0.569 Sum_probs=211.9
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+||++.+|+.|+++|+..... .+.+++.++++..++.+.++.+ |+++..+..+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999976543 3455667777888888888887 8898888888999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000503 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~ 1455 (1459)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999988778999999999999988999999999999999999999986 457887765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=414.16 Aligned_cols=262 Identities=22% Similarity=0.300 Sum_probs=217.1
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcccCCCCceEE
Q 000503 528 HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 607 (1459)
Q Consensus 528 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 607 (1459)
+.++++++|+++++++.+..|+..+|..... ..|+++|+..++.+...... . .+....++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~i~ 82 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--D-----------FNHANVFE 82 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--C-----------CCcCceEE
Confidence 4789999999999999999999887765433 56999998765532210000 0 12345799
Q ss_pred EEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----------
Q 000503 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---------- 672 (1459)
Q Consensus 608 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---------- 672 (1459)
++|+++.|... . +++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 83 ~~nls~~y~~~-~---~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 83 IRNFNFWYMNR-T---KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEeeEEEecCC-C---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 99999999642 1 235999999999999999999999999999999999996 5799987643
Q ss_pred -----cEEEEcCCCCCCCCCHHHHhccCCCCC----HH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 -----SIAYVPQVPWILSGTIRDNILFGKNYD----PQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 -----~i~y~~Q~~~l~~~ti~~nI~~g~~~~----~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.++||||+||++++||+|||.|+..++ ++ .|.++++.|+|..+++ +.++++|.+||||||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqk 231 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQ 231 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHH
Confidence 599999999999999999999874322 22 2677888888866553 678899999999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1459)
|||+||||++++|+|+||||||+|||+++.+++.+. +.. +.+++|+|+|||+++++.. ||+|++|++|+|++.|+++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~-l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILE-LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999986554 554 4567899999999999887 9999999999999999999
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 9854
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=387.37 Aligned_cols=219 Identities=53% Similarity=0.912 Sum_probs=205.6
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445799999999999999999999999999999999999999999999999999988988999999
Q ss_pred EEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+|+||+|.+|++|++||++++....++++.++++..++.+.+..+ |+++..++.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999987666777889999999999998876 999999888999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecCh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p 1439 (1459)
+||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=377.35 Aligned_cols=207 Identities=46% Similarity=0.864 Sum_probs=187.4
Q ss_pred CCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH
Q 000503 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL 1296 (1459)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l 1296 (1459)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1297 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1297 R~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|++++|+||+|.+|++|+++|+.++...+++++.++++ +++....||+||+||++||||++++|
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998665444444433332 34556789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecCh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p 1439 (1459)
+|+||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=394.78 Aligned_cols=191 Identities=23% Similarity=0.314 Sum_probs=161.2
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcc
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1459)
...+++.+|+|.|.++.++.+++++++++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999999877899999999999999999999999999999999999999999988865 789
Q ss_pred cEEEeCCCcCCCccHHHhc---Cc----CCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCC-CCCChhHHHHHHHHHH
Q 000503 1300 FAVVPQSPFLFEGSLRDNL---DP----FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1300 i~~VpQdp~lf~gTIReNL---dp----~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G-~~LSgGQrQrl~LARA 1371 (1459)
|+|-.|.-+=| ..-|. |+ +...+++|+.+.|... |++..+...+ ..||||||-|+++|-.
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~---------Gl~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSF---------GLSGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhc---------CCCchhhhccccccCCcchhHHHHHHH
Confidence 99999976532 22221 11 1123777877666554 6666665544 4699999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEE
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVE 1435 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE 1435 (1459)
...+|.+|||||||..||.++-..+-++|+. |+| -||+|+|+.+.+.. |+.++|.++|+|.-
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999976 444 79999999999987 89999999999975
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=398.81 Aligned_cols=223 Identities=24% Similarity=0.384 Sum_probs=190.6
Q ss_pred CCccEEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----
Q 000503 1219 FQGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---- 1291 (1459)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i---- 1291 (1459)
....|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 344699999999997432 3699999999999999999999999999999999999999999999999998653
Q ss_pred ------------ChHHHhcccEEEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc-hhhhc
Q 000503 1292 ------------PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKE 1353 (1459)
Q Consensus 1292 ------------~~~~lR~~i~~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e 1353 (1459)
+...+|++++||+|+| .+|++|+++|+.+... .++++. .++ ..+.++.+|++ ...++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~---~~~--~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA---KKL--AKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHH---HHH--HHHHHHHcCCChhHhcC
Confidence 3567899999999998 6899999999965421 223322 222 23456666886 56788
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hcCEEEEEeCC
Q 000503 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHG 1431 (1459)
Q Consensus 1354 ~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlVl~~G 1431 (1459)
.+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998753 5899999999999875 59999999999
Q ss_pred eEEEecChhHHhccC
Q 000503 1432 HLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1432 ~IvE~G~p~eLl~~~ 1446 (1459)
++++.|+|+++.+++
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999887643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=399.56 Aligned_cols=223 Identities=25% Similarity=0.388 Sum_probs=188.8
Q ss_pred EEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH---Hh
Q 000503 1223 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1459)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
++|++|||++.+|+ .|+++|+.+.. ..+.+++.+ ...+.++.+|++.........||||||||++|||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999996 69999996421 122222211 1223334446655556667789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
.+|+|||||||||+||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|+|+|.|++++++.++...+
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~ 236 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPL 236 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHH
Confidence 99999999999999999999999999988753 7899999999999976 89999999999999999999987665433
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=383.02 Aligned_cols=229 Identities=34% Similarity=0.582 Sum_probs=208.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+||+|.+|+.|++||+..+.. ...+++.+.++.+++.+.++.+ |+++..+....+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986533 3445666777888888888887 8888888888899999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHH
Q 000503 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~ 1452 (1459)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.++. +.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG-GVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC-cchhh
Confidence 9999999999999999999999887889999999999999999999999999999999999998754 45554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=379.27 Aligned_cols=225 Identities=40% Similarity=0.652 Sum_probs=206.9
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|.|+++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1301 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+|+||+|.+|++|+++|+..+.. ..++++.++++.+++.+.++.+ |+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999976543 3456777888889999888887 89999988888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccC
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++.++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999998876789999999999999889999999999999999999987653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=420.90 Aligned_cols=199 Identities=24% Similarity=0.331 Sum_probs=162.9
Q ss_pred CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC--CCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCC-
Q 000503 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE- 1311 (1459)
Q Consensus 1235 ~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~- 1311 (1459)
+....|+|||=-++||...|++|.||||||||++.|.+=.. ..+|+|+|||.+..+ +..++++|||.|++.-.+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34568999999999999999999999999999999997653 247999999999765 788999999999886444
Q ss_pred ccHHHhcCcC------CCCChHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC-CEEE
Q 000503 1312 GSLRDNLDPF------HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS-KVLC 1380 (1459)
Q Consensus 1312 gTIReNLdp~------~~~~d~e----i~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~-~ILl 1380 (1459)
-||||-|.+. .+.+++| +.++++-.+|.+.- |..||.-|..||..||.||.||=-|..|| .||.
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-----daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-----DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-----hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 5999998542 2233333 33344444443332 45688878889999999999999999999 8999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh--HhhcCEEEEEe-CCeEEEecChhH
Q 000503 1381 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILD-HGHLVEQGNPQT 1441 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~t--i~~~DrIlVl~-~G~IvE~G~p~e 1441 (1459)
||||||+||+++...|.+.+|+.. .|+||++.-|+.+. .+.+|+++.|+ .|+.|.+|++.+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999999874 69999999999885 35689999995 589999888654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=376.61 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=186.7
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++++|+ ..++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.|+.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 378999999997 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcC-CCccHHHhcCcCC--------CCC--hH-HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000503 1302 VVPQSPFL-FEGSLRDNLDPFH--------MND--DL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1302 ~VpQdp~l-f~gTIReNLdp~~--------~~~--d~-ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LA 1369 (1459)
||||++.. |.-||+|-+.++. ..+ |+ .+.++|+.+++.++.+ ..-..||||||||+.||
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~---------r~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD---------RPVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc---------CcccccChhHHHHHHHH
Confidence 99999754 5559998875432 112 33 4667788887766543 22335999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||.++|+||+||||||+||....-.+++.+++.. +++|+|+|.|+++... .||++++|++|+++..|+|+|.+..
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999999999999999875 4799999999998765 5899999999999999999999864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=361.29 Aligned_cols=225 Identities=29% Similarity=0.463 Sum_probs=185.4
Q ss_pred cEEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC-ChHHHhc
Q 000503 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-PVRDLRG 1298 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i-~~~~lR~ 1298 (1459)
.++++|+++.|+... .++|+||||+|.+||.+||+|+||||||||.++|.|+.+|++|+|.+||.++... +....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997542 2599999999999999999999999999999999999999999999999776553 3446788
Q ss_pred ccEEEeCCCc--CCC-ccHHHhc----CcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000503 1299 RFAVVPQSPF--LFE-GSLRDNL----DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1459)
Q Consensus 1299 ~i~~VpQdp~--lf~-gTIReNL----dp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LAR 1370 (1459)
.+.+|+|||. +=+ -||++-| .+.+. ...++++++|+.+||.+. ........||||||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~--------~l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS--------FLDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH--------HHhcCchhcChhHHHHHHHHH
Confidence 8999999996 222 2555554 33221 123456677776665433 234556679999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
||.-+|++||+|||||+||.-..+.|.+.+.+..+ +-|.|+|||+++.+.. ||||+||++|+++|.++-+++...+.
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~ 234 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCc
Confidence 99999999999999999999999999999988765 4599999999999987 89999999999999999999998755
Q ss_pred cHHHHHH
Q 000503 1448 SVFSSFV 1454 (1459)
Q Consensus 1448 ~~f~~l~ 1454 (1459)
..|.+.+
T Consensus 235 h~ytr~L 241 (252)
T COG1124 235 HPYTREL 241 (252)
T ss_pred cHHHHHH
Confidence 5665544
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=371.72 Aligned_cols=210 Identities=29% Similarity=0.457 Sum_probs=184.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+.. +||+||||+|++||.+||+||||||||||+++++|+++|++|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999755 49999999999999999999999999999999999999999999999998776543 57899
Q ss_pred EEeCCC---cCCCccHHHhcCcCCC-----------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000503 1302 VVPQSP---FLFEGSLRDNLDPFHM-----------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1302 ~VpQdp---~lf~gTIReNLdp~~~-----------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~ 1367 (1459)
||||.. .-|+-||+|-+..+.. .+.+++.+||++++++++. |-.++ .|||||+||+.
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----~r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----DRQIG----ELSGGQKQRVL 149 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----CCccc----ccCcHHHHHHH
Confidence 999955 4588999999865421 1237889999999998764 33444 59999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~-~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||||+++|++|+|||||+++|+.++..|.+.|.+..+ ||||++|+|+++.+.+ +|+|+.|. +++...|+|++.+..
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 99999999999999999999999999999999988764 8999999999999987 79999995 578899999999875
Q ss_pred C
Q 000503 1446 E 1446 (1459)
Q Consensus 1446 ~ 1446 (1459)
+
T Consensus 229 ~ 229 (254)
T COG1121 229 E 229 (254)
T ss_pred H
Confidence 3
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=378.75 Aligned_cols=232 Identities=37% Similarity=0.639 Sum_probs=211.4
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 459999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EeCCCcCCCccHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1303 VPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+ |+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23566677888888998888887 8999998888899999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000503 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~~ 1456 (1459)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++.+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 999999999999999999999887668899999999999999999999999999999999999875 4577776653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=355.12 Aligned_cols=199 Identities=28% Similarity=0.369 Sum_probs=171.0
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
|+++|++-+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++|
T Consensus 3 i~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 3 IEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred EEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHH
Confidence 677888777653 2359999999999999999999999999999999999999999999998
Q ss_pred -cEEEEcCCCCCCCC-CHHHHhccCC----CCC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVPWILSG-TIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~-ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
++|+|+|+..||.- ||.|||..+. ..+ +++-.+.++..+|.+..+..|. .|||||||||
T Consensus 77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRV 145 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRV 145 (240)
T ss_pred HhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHH
Confidence 47899999999965 9999999863 222 2344566777777776665554 8999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
||||||.-+|+++|+|||||||||+....+++- +......|.|.|+|||.+.+... ||||+.|++|+|+++|+++++-
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~v-m~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDV-MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH-HHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 999999999999999999999999999988875 33324568899999999999987 9999999999999999999875
Q ss_pred h
Q 000503 822 V 822 (1459)
Q Consensus 822 ~ 822 (1459)
.
T Consensus 225 ~ 225 (240)
T COG1126 225 D 225 (240)
T ss_pred c
Confidence 4
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=377.58 Aligned_cols=231 Identities=37% Similarity=0.611 Sum_probs=207.3
Q ss_pred EEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1223 IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
++++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999643 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1302 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
|+||+|.+|+.|++||+..... ...+++.+.++..++.+.+..+ |+++..+....+||||||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999976432 3445667778888888888877 888888888889999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|+++++.+.. +..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-GVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC-hhHHHHh
Confidence 99999999999999999999998876789999999999999889999999999999999999998754 4555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=383.02 Aligned_cols=221 Identities=29% Similarity=0.458 Sum_probs=193.1
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++||+++|++.. +|+|+||+|+.||.++++|||||||||++++|.|+.+|++|+|.|||.|+.++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999999976 7899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCC---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+|+|+..||+. ||++||.+.-+. ..+|+.+.. .+..+.++++..+......||||||||++|||||.++|+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV-----~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV-----KEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHH-----HHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 99999999987 999999865322 334443222 223334477777788888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
+++||||.|+||+.....+...|++..+ +.|+|.|||+....+. +|||+||++|+|.+.|+|.|+.+++...|-
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fV 230 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhh
Confidence 9999999999999999988888877543 6899999999888776 799999999999999999999998877664
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=353.71 Aligned_cols=228 Identities=28% Similarity=0.450 Sum_probs=196.4
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1297 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1297 (1459)
-.|++++|+++|.+ ..|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 46999999999964 4699999999999999999999999999999999999999999999999999988764 568
Q ss_pred cccEEEeCCCcCCCc-cHHHhcCc-CCCC---ChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHH
Q 000503 1298 GRFAVVPQSPFLFEG-SLRDNLDP-FHMN---DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~g-TIReNLdp-~~~~---~d~ei~~aL~~~~l~~~i~~lGLdt~-v~e~G~~LSgGQrQrl~LARA 1371 (1459)
+++|++.|+.-||+. ||+||+.+ ..++ +++++.+ +.. ..++..||... ...-.+.||||.+.|.+||||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~----~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVL----MKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHH----HHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 999999999999987 99999964 3333 3344332 111 12333388777 445577899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1448 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~ 1448 (1459)
+.-+|+|+++|||||+||+-+...+-+.|++..+ +.|+|+|||+++++.. ||||+++.+|+|+-.|+|+|+.+.++-
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P 239 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP 239 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCH
Confidence 9999999999999999999999999998887643 8999999999999987 699999999999999999999998887
Q ss_pred HHHHHHH
Q 000503 1449 VFSSFVR 1455 (1459)
Q Consensus 1449 ~f~~l~~ 1455 (1459)
..+++++
T Consensus 240 ~v~qf~~ 246 (263)
T COG1127 240 WVRQFFN 246 (263)
T ss_pred HHHHHhc
Confidence 7777664
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=375.81 Aligned_cols=226 Identities=31% Similarity=0.450 Sum_probs=192.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1302 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1302 ~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
|+||+|.+|+.|+++|+.......+.+ ...+.+.++.+|++ .........||||||||++||||++++|++||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcH------HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999997542221111 01123344445665 34556677899999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000503 1381 LDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~~ 1455 (1459)
|||||++||.++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++..++...|.+.+.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 999999999999999999998764 37999999999999876 8999999999999999999998766545655443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.89 Aligned_cols=215 Identities=31% Similarity=0.510 Sum_probs=192.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCC-CCChHHHhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1300 (1459)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999877 78999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEeCCC--cCCCccHHHhcCcCCC---CChHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1301 AVVPQSP--FLFEGSLRDNLDPFHM---NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1301 ~~VpQdp--~lf~gTIReNLdp~~~---~~d~e----i~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
++|.|+| .+|..||.+.+.++.. .+.+| +.++|+.+ |+.........+||||||||++||.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v---------gl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV---------GLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc---------CchhhccCCccccCCcceeeHHhhHH
Confidence 9999999 7999999999987643 24444 33444444 44444556677899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|..+|+|||||||||+||+...+.+.+.+++..+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.++.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999999999999998754 4799999999999998 8999999999999999999998864
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.52 Aligned_cols=217 Identities=37% Similarity=0.540 Sum_probs=196.9
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1301 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1301 ~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+|+||+|.+|..|++||+..... .+++++.+.++..++.+.++.. |+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999976432 3445677888999998888776 89998888888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEec
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G 1437 (1459)
+|||||||++||.++.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.99 Aligned_cols=217 Identities=29% Similarity=0.442 Sum_probs=184.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh---HHHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1299 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999963 369999999999999999999999999999999999999999999999999987764 567889
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
++|+||++.+|++ |+++|+.... ..+.++..+ ...+.++.+|++.........||||||||++|||||++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999986 9999996531 122222211 12233444466555556666899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++.+..
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCC
Confidence 9999999999999999999999999988643 7899999999999876 8999999999999999999998643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=390.94 Aligned_cols=224 Identities=27% Similarity=0.428 Sum_probs=191.0
Q ss_pred EEEEEEEEEecC--CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH---Hh
Q 000503 1223 IEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1459)
|+++|++++|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
++++||||++.+|+ .|+++|+.+.. ..++++..+ .+.+.++.+|++........+||||||||++|||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999987 69999996531 122222211 2334555567776667777789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||||++|++|++++.|+++++..++...+
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999999999999999999999999988643 7899999999999876 89999999999999999999987654434
Q ss_pred H
Q 000503 1451 S 1451 (1459)
Q Consensus 1451 ~ 1451 (1459)
.
T Consensus 237 ~ 237 (343)
T PRK11153 237 T 237 (343)
T ss_pred H
Confidence 3
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=372.35 Aligned_cols=213 Identities=32% Similarity=0.458 Sum_probs=180.5
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC-----CCCCceEEECCEeCCCCC--hHH
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTP--VRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~-----~~~~G~I~IDG~di~~i~--~~~ 1295 (1459)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 567
Q ss_pred HhcccEEEeCCCcCCCccHHHhcCcCCC---C-ChHHHHHHHHHhcHHHHHHhCCCchhhhcC--CCCCChhHHHHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DDLKIWSVLEKCHVKEEVEAVGLETFVKES--GISFSVGQRQLICLA 1369 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~gTIReNLdp~~~---~-~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~--G~~LSgGQrQrl~LA 1369 (1459)
+|++++|+||++.+|..|++||+.+... . .+++.. ..+.+.++.+|++...... +.+||||||||++||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHH-----HHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 8889999999999998899999975321 1 111111 1122334444665544444 468999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHH
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
||++++|++|||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999987656899999999999875 899999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=380.77 Aligned_cols=218 Identities=30% Similarity=0.514 Sum_probs=185.1
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC--hHHHh
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR 1297 (1459)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996432 36999999999999999999999999999999999999999999999999998743 45788
Q ss_pred cccEEEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc--hhhhcCCCCCChhHHHHHHHHH
Q 000503 1298 GRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGISFSVGQRQLICLAR 1370 (1459)
Q Consensus 1298 ~~i~~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLd--t~v~e~G~~LSgGQrQrl~LAR 1370 (1459)
++++||||+| .+|+.|+++|+.+... .++++..+. ..+.++.+|++ ...+.....||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 9999999998 5788999999975321 233322211 12333444665 4456667789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++++++
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999988643 7899999999999865 899999999999999999998763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=372.25 Aligned_cols=219 Identities=26% Similarity=0.430 Sum_probs=187.3
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC---CCCceEEECCEeCCCCChHHHhc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRG 1298 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~ 1298 (1459)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ccEEEeCCCcCCCccHHHhcCcCCCC---------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000503 1299 RFAVVPQSPFLFEGSLRDNLDPFHMN---------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~gTIReNLdp~~~~---------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LA 1369 (1459)
+++|+||+|.+|+.|+++|+.+.... .++++.++++.+++.+.+ .....+.+.+||||||||++||
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-----KDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-----hHHhcCCcccCCHHHHHHHHHH
Confidence 99999999999999999999754211 111233344444332221 1234566778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
||++++|+++||||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999999999999999999999999999999887678999999999998875 89999999999999999999987553
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=378.79 Aligned_cols=219 Identities=28% Similarity=0.446 Sum_probs=187.4
Q ss_pred cEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1222 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
.++++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||+| .++..|+++|+.+... .+.++..+ ...+.++.+|++........+||||||||++|||||+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE-----RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999998 3566799999975421 22222111 122334444666556666678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.++
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999987643 7999999999999988999999999999999999998765
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=373.02 Aligned_cols=222 Identities=26% Similarity=0.442 Sum_probs=187.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 369999999999999999999999999999999999999999999999999988876554 57799
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCC-ChHHH-------HHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMN-DDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~-~d~ei-------~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
|+||+|.+|++ |+++|+...... ....+ ...-......+.++.+|++...+.....||||||||++||||+
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999998643211 00000 0000112234556666887777777788999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
+++|++|||||||++||..+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccCC
Confidence 99999999999999999999999999998764 68999999999999976 8999999999999999999997643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=355.30 Aligned_cols=208 Identities=30% Similarity=0.421 Sum_probs=173.6
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh---HHHh
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR 1297 (1459)
++++||+..|..+. ..+|+++||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++- ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997543 368999999999999999999999999999999999999999999999999999884 4444
Q ss_pred -cccEEEeCCCcCCCc-cHHHhcCc---CCCCChHHHHHHHHHhcHHHHHHhCCCchhhh-cCCCCCChhHHHHHHHHHH
Q 000503 1298 -GRFAVVPQSPFLFEG-SLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1298 -~~i~~VpQdp~lf~g-TIReNLdp---~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~-e~G~~LSgGQrQrl~LARA 1371 (1459)
++||+|+|+..|++. |++||+.. +......+..++ ..+..+.+|+..... .....||||||||+|||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 569999999999876 99999863 222221111111 122333346665544 5577899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEEE
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVE 1435 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE 1435 (1459)
|+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+.+....|||++.|.+|++.+
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999998874 3789999999999999999999999999543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=386.41 Aligned_cols=222 Identities=29% Similarity=0.434 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999963 4599999999999999999999999999999999999999999999999999887753 5789
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
++|+|++.+|+. |++||+.+.-. .+++++.+. +.+.++.+|++.........||||||||++|||||+++|
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999986 99999975421 222222211 122333335555555666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
+|||||||||+||..+.+.+++.|++..+ ++|+|+|||+.+.+.. ||||+||++|+|++.|+|+++.+++...|.
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~ 233 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHH
Confidence 99999999999999999999999987754 7999999999999865 899999999999999999999988876553
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=388.36 Aligned_cols=222 Identities=23% Similarity=0.352 Sum_probs=189.1
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+.+ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999422 4699999999999999999999999999999999999999999999999999988764 47899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
||||++.+|+. |++||+.+... .+..+..+ ...+.++.+|++...+....+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975422 22222211 12233444466666666677899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
|||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|.
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 9999999999999999999999987653 7899999999998865 899999999999999999999988765554
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=348.19 Aligned_cols=220 Identities=28% Similarity=0.415 Sum_probs=189.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC---hHHHhc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1298 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~ 1298 (1459)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999997 4567999999999999999999999999999999999999999999999999998887 677789
Q ss_pred ccEEEeCCCcCCCc-cHHHhcCcC------------CCCChH---HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhH
Q 000503 1299 RFAVVPQSPFLFEG-SLRDNLDPF------------HMNDDL---KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1362 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~g-TIReNLdp~------------~~~~d~---ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQ 1362 (1459)
++|+|+|++-|-+- |+-+|+..+ +-++.+ +..++|+++|+.+. .-.+..+|||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~---------A~qra~~LSGGQ 152 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK---------AYQRASTLSGGQ 152 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH---------HHHHhccCCcch
Confidence 99999999998875 899997432 233333 34556666665543 333455799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
+||++|||||.++|+|++=|||+|+||+++.+.+++.|++.. .|.|||+.-|.++..++ ||||+-|++|+|+..|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998764 58999999999999987 799999999999999999
Q ss_pred hHHhccCCcHHHHHH
Q 000503 1440 QTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1440 ~eLl~~~~~~f~~l~ 1454 (1459)
+||-+ ..+.+.|
T Consensus 233 ~el~~---~~~~~iY 244 (258)
T COG3638 233 SELTD---EALDEIY 244 (258)
T ss_pred hhhhH---HHHHHHh
Confidence 99643 2455544
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=368.62 Aligned_cols=214 Identities=27% Similarity=0.390 Sum_probs=181.3
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++||+++|+....++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999653246999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EeCCCcCC-CccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf-~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||+|.+| ..|+++|+.... ....++.. ....+.++.+|++........+||+|||||++||||++++|++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998 569999986431 11211111 1123344444665555555668999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHH
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999987778999999999999976 899999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=371.95 Aligned_cols=225 Identities=29% Similarity=0.456 Sum_probs=190.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt--~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+||+|.+|+ .|++||+..... .+.++. .....+.++.+|++. .....+.+||||||||++||||++++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999996 599999964321 111111 122344555567764 566777899999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH-HH
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF-SS 1452 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f-~~ 1452 (1459)
++|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+++...+ ..
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHH
Confidence 9999999999999999999999998864 37999999999998765 89999999999999999999976544333 44
Q ss_pred H
Q 000503 1453 F 1453 (1459)
Q Consensus 1453 l 1453 (1459)
+
T Consensus 235 ~ 235 (242)
T cd03295 235 F 235 (242)
T ss_pred H
Confidence 4
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=386.81 Aligned_cols=221 Identities=28% Similarity=0.421 Sum_probs=192.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4589999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
||||++.+|+ .|++||+.+... .+..+.. ....+.++.+|++........+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 599999975421 1222221 123445555688777777888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...|.
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFV 231 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999999999999999999999987653 7899999999999765 899999999999999999999998876663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=379.42 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=187.0
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----ChHH
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~ 1295 (1459)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 3699999999999999999999999999999999999999999999999999754 3457
Q ss_pred HhcccEEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000503 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1296 lR~~i~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LA 1369 (1459)
+|++++||||+| .+|+.|+++|+.+.. ..+.++..+ + ..+.++.+||++ ..+..+.+||||||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~---~--~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN---Y--AHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH---H--HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 899999999998 588899999996532 122222222 1 234555668874 45667889999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999998864 48999999999999865 899999999999999999998864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=376.80 Aligned_cols=219 Identities=25% Similarity=0.340 Sum_probs=195.8
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+... .++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++|
T Consensus 2 ~i~~~nls~~~~~~~----~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEGG----NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCCC----CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 478999999996321 236999999999999999999999999999999999998 799999987
Q ss_pred -cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccC
Q 000503 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1459)
.|+||||+|++|++|++||+....++++++..++++.++|+..+..+|++++|.++++|.+||||||||++||||++++
T Consensus 77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999964445677888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhccccCccc
Q 000503 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 830 (1459)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 830 (1459)
|+|+||||||++||+.+.+.+.+. +.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....+..+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~-l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKT-LKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 999999999999999998877765 443 34578999999999999899999999999999999999998765444433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=342.46 Aligned_cols=473 Identities=19% Similarity=0.247 Sum_probs=326.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccChhhHHHHHhhhhhhhhchhhHHHHHH
Q 000503 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1020 (1459)
Q Consensus 941 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnrfs~D~~~id~~l~~~l~~~ 1020 (1459)
++..+.++..+..+...+........+...-.+++.++.++++.+|+.-+++...++++.++++|+..|.-.+ ..+..+
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~ 128 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPEL 128 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHH
Confidence 3333444444444455555666778888999999999999999999999999999999999999999998332 233445
Q ss_pred HHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHH-
Q 000503 1021 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY- 1099 (1459)
Q Consensus 1021 ~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~- 1099 (1459)
.......++..+.+++.+|.+..+.+..+++..+.+.+.++..-+--+...+....++++++..++|-+..+..+-..+
T Consensus 129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~ 208 (546)
T COG4615 129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY 208 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence 6666677778888888888766655544444333222211111111111223345688999999999999887754333
Q ss_pred -HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 000503 1100 -FMAKFKEHVVLYQR----TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1174 (1459)
Q Consensus 1100 -~~~~~~~~~~~~~~----~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1174 (1459)
+.+.+...-....+ ..........|.++.+-. ++..+..++.. .... +...........+.+-+
T Consensus 209 ~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~----lIGlvf~lal~---~~w~----st~~a~tivlvlLflr~ 277 (546)
T COG4615 209 VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLG----LIGLVFWLALS---LGWA----STNVAATIVLVLLFLRT 277 (546)
T ss_pred HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHh---hccc----hhhHHHHHHHHHHHHhh
Confidence 23333221111111 111111233444332211 11111111110 0111 11111111122233456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEE
Q 000503 1175 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVG 1254 (1459)
Q Consensus 1175 ~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gekvg 1254 (1459)
++.+++..+..+-++.++.+++.++...|+.+.-....+.|+| ..|+++||.|.|.+.. --+..||++|+.||.|-
T Consensus 278 pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvF 353 (546)
T COG4615 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVF 353 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEE
Confidence 7888888888899999999999998764443322222333445 4699999999997653 45788999999999999
Q ss_pred EECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHH
Q 000503 1255 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334 (1459)
Q Consensus 1255 IvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~ 1334 (1459)
|+|.|||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|.-|-+||+.++ -+.+..+.+.+..-|+
T Consensus 354 liG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~Lq 429 (546)
T COG4615 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQ 429 (546)
T ss_pred EECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998764 3334456677777777
Q ss_pred HhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHh--cCCcEEEEe
Q 000503 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE--CKGMTVITI 1412 (1459)
Q Consensus 1335 ~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~--~~~~TvI~I 1412 (1459)
+..+.....-. |-... ...||-|||.|+++--|++.+.+|+++||=-+--|+.=.+...+.+-.. .+||||+.|
T Consensus 430 rLel~~ktsl~--d~~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI 505 (546)
T COG4615 430 RLELAHKTSLN--DGRFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI 505 (546)
T ss_pred HHHHhhhhccc--CCccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE
Confidence 66554432211 11111 1259999999999999999999999999999999999999887776433 359999999
Q ss_pred ccChhhHhhcCEEEEEeCCeEEEec
Q 000503 1413 AHRISTVLNMDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1413 aHrl~ti~~~DrIlVl~~G~IvE~G 1437 (1459)
||+-.....+||++.|++|+++|.-
T Consensus 506 sHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 506 SHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999863
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=369.96 Aligned_cols=216 Identities=28% Similarity=0.393 Sum_probs=183.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||+|.+|+ .|+++|+.+.... +..+.. ..+.+.++.+|++........+||+|||||++|||||++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999986 5999999753211 111111 122344555577666666677899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
+|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 9999999999999999999999999987643 7899999999998765 89999999999999999999986543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=373.85 Aligned_cols=221 Identities=28% Similarity=0.405 Sum_probs=187.8
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CC
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1292 (1459)
++.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999964 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHHhcccEEEeCCCcCCCccHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
...+|++++|+||+|.+|+.|+++|+.+.. ..+. ++++++++.+++.+. +....++...+|||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-----VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-----hHHHHhcCCCCCCHHHHH
Confidence 667899999999999999999999997531 1222 233444444443221 124456667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|++||||++++|+||||||||++||.++.+.+.+.|++..++.|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987678899999999999865 8999999999999999999998
Q ss_pred ccCC
Q 000503 1444 QDEC 1447 (1459)
Q Consensus 1444 ~~~~ 1447 (1459)
+.+.
T Consensus 244 ~~~~ 247 (260)
T PRK10744 244 TKPA 247 (260)
T ss_pred hCCC
Confidence 7543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=371.17 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=186.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC-----CceEEECCEeCCCC--ChHH
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~i--~~~~ 1295 (1459)
++++||+++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999763 4567
Q ss_pred HhcccEEEeCCCcCCCccHHHhcCcCC---C-CChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH---M-NDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~gTIReNLdp~~---~-~~d~ei~~aL~~~~l~~~i~~lGLd----t~v~e~G~~LSgGQrQrl~ 1367 (1459)
.|++++|+||++.+|+.|+++|+.+.. . .+.++..+ ...+.++.+|++ ...+....+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999996421 1 11111111 122334444555 4556667789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 234 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNP 234 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999987667899999999999876 8999999999999999999998765
Q ss_pred CcHH
Q 000503 1447 CSVF 1450 (1459)
Q Consensus 1447 ~~~f 1450 (1459)
...+
T Consensus 235 ~~~~ 238 (247)
T TIGR00972 235 KEKR 238 (247)
T ss_pred CChH
Confidence 5444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=367.06 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=182.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1459)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988876654 67899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCCC-hHHHHHHHHHhcHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMND-DLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~~-d~ei~~aL~~~~l~~~i~~l-GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
|+||++.+|++ |+++|+.+..... +.+..+ .+.+.++.+ +++...+.....||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 9999996542211 111111 122233333 455555666678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999998764 57899999999998876 89999999999999999998764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=361.50 Aligned_cols=205 Identities=27% Similarity=0.356 Sum_probs=172.3
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
|++++++..|... ......+|+||||+|++|++.+|+|.||+|||||++++.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6788888888753 22334579999999999999999999999999999999999999999999988
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCCC----CHHHHHHHH---HHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKNY----DPQSYSETL---KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~~----~~~~~~~v~---~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
+||+++|++.|++ .||.|||.|..+. .++...+|. +..+|.+. .+....+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhH
Confidence 5999999999997 6999999997432 233444444 44444432 245567999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
|+|||||..+|+|||.|||||||||+|.+.|++.+..-....|-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999986432223447799999999999997 999999999999999999887
Q ss_pred Hh
Q 000503 821 AV 822 (1459)
Q Consensus 821 ~~ 822 (1459)
-.
T Consensus 230 F~ 231 (339)
T COG1135 230 FA 231 (339)
T ss_pred hc
Confidence 54
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=369.47 Aligned_cols=219 Identities=28% Similarity=0.434 Sum_probs=185.6
Q ss_pred EEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHh
Q 000503 1223 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1297 (1459)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999877654 347
Q ss_pred cccEEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
++++|+||+|.+|+ .|++||+.... ..+..+. .....+.++.+|++........+||||||||++||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 89999999999997 59999986421 1111111 112234455557766666677789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|+++++.+++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 232 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999998864 27899999999999876 8999999999999999999987643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.43 Aligned_cols=223 Identities=26% Similarity=0.392 Sum_probs=187.8
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1294 (1459)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 4699999999999999999999999999999999999997 48999999999863 3456
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC----CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||+|.+|+.|++||+.+... .+ ++++.++++.+++.+.+ +........+||||||||+
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-----KDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----HHHHhCCcccCCHHHHHHH
Confidence 77899999999999999999999965321 11 23344555555543222 2233445678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||+++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999866 899999999999999999999876
Q ss_pred CCcHHH
Q 000503 1446 ECSVFS 1451 (1459)
Q Consensus 1446 ~~~~f~ 1451 (1459)
+.-.|.
T Consensus 240 ~~~~~~ 245 (254)
T PRK14273 240 PKNTKT 245 (254)
T ss_pred CCChHH
Confidence 554333
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=377.15 Aligned_cols=218 Identities=29% Similarity=0.460 Sum_probs=184.8
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC----CChHH
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1295 (1459)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000503 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1296 lR~~i~~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~LA 1369 (1459)
+|++++||+|+| .+|+.|+++|+.+... .+.+++.+ ...+.++.+|++ ........+||||||||++||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 7899999999965321 22222211 123344445664 345666778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+|+++.++
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998764 48899999999998865 999999999999999999998764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=333.59 Aligned_cols=207 Identities=29% Similarity=0.382 Sum_probs=180.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1299 (1459)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|||||||||++++|++...|++|+|.++|.|+++++.+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999876 7899999999999999999999999999999999999999999999999999988754 58999
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCC---CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~---~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
||+|.||--|... |+.||+.+-- ..+. +++.++|+.+||.+ ....-...|||||+||+|||||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~---------k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH---------KARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch---------hhhcCccccCchHHHHHHHHHH
Confidence 9999999988865 9999986431 1222 34555666665544 4445566899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhc-CEEEEEeCCeEEEecCh
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~-DrIlVl~~G~IvE~G~p 1439 (1459)
+..+|++||=||||-|||+++...|++.+.+.. .|.||++.||+.+.+.++ -|++.+++|+++....+
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999998764 599999999999999987 78999999999977654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=385.40 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=180.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH----hcccEEEeCCCcCCCc
Q 000503 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG 1312 (1459)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lf~g 1312 (1459)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 7899999999999985
Q ss_pred -cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCC
Q 000503 1313 -SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388 (1459)
Q Consensus 1313 -TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~l 1388 (1459)
|+++|+.+... .+.++..+ ...+.++.+||+...+....+||||||||++|||||+++|+|||||||||+|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999964321 12222211 1223344447777777788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1389 DAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1389 D~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
|+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999998764 37999999999998755 89999999999999999999998765444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.80 Aligned_cols=215 Identities=35% Similarity=0.525 Sum_probs=194.0
Q ss_pred CCccEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHh
Q 000503 1219 FQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR 1297 (1459)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 24699999999999999999999999999999999999999999999999999888888888
Q ss_pred cccEEEeCCCcCCCccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1298 GRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
++++|+||+|.+|++|+++|+++... ....++++..++.++.+.++.+ |+++.+++...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999986432 2334555566667788888888 89988898899999999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeE
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~I 1433 (1459)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987778999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=373.92 Aligned_cols=220 Identities=25% Similarity=0.468 Sum_probs=189.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999644457999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||+| .++..|+++|+.+.. ..++++..+ .+.+.++.+|++........+||||||||++|||||+++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 455679999997531 122222221 1233445557776677777899999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccC
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
++|||||||++||..+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+++
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999988643 48999999999998889999999999999999999987643
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=371.36 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=185.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1459)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 589999999999875 3455
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCC----CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||++.+|++|+++|+.+.. ... ++++.++++.+++.+.+ +...+....+||||||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-----KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHHHHHH
Confidence 7789999999999999999999996431 111 22344444444443221 2234566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999987667899999999999865 899999999999999999999876
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
+.
T Consensus 239 ~~ 240 (253)
T PRK14242 239 PR 240 (253)
T ss_pred CC
Confidence 54
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=367.01 Aligned_cols=215 Identities=27% Similarity=0.422 Sum_probs=185.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred EeCCCcCC-CccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf-~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.++ ..|+++|+..... .+.++.. ....+.++.+|++...+....+||||||||++||||++++|+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 5799999965321 1111111 1234455556887777777789999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999998865 47899999999999988999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=372.70 Aligned_cols=223 Identities=25% Similarity=0.390 Sum_probs=188.6
Q ss_pred CCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--
Q 000503 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN-- 1290 (1459)
Q Consensus 1218 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~-- 1290 (1459)
|....|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 33457999999999964 359999999999999999999999999999999999987 689999999999863
Q ss_pred CChHHHhcccEEEeCCCcCCCccHHHhcCcCCC---CC---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1291 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1291 i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~~---d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
.+...+|++++|+||+|.+|+.|++||+.+... .. ++++.++++.++++. +++.........||+||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-----ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-----hhhhhhCCCcccCCHHHHH
Confidence 566778899999999999999999999975422 11 233444555554432 2233455566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeC-----------Ce
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-----------GH 1432 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~-----------G~ 1432 (1459)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.+ ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987668899999999998865 899999996 67
Q ss_pred EEEecChhHHhccCC
Q 000503 1433 LVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1433 IvE~G~p~eLl~~~~ 1447 (1459)
++|.|+++++++++.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999987553
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=369.28 Aligned_cols=215 Identities=30% Similarity=0.428 Sum_probs=183.9
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC---hHHHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~~ 1299 (1459)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred cEEEeCCCcCCC-ccHHHhcCcCCC------------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1300 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1300 i~~VpQdp~lf~-gTIReNLdp~~~------------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
++|+||++.+|. .|+++|+.+... .+++ ......+.++.+|++...+..+..||||||||+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE------EKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHH------HHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 999999999887 699999964211 1111 011123344555776666777789999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+||||++++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999998864 37999999999999985 8999999999999999999974
Q ss_pred c
Q 000503 1444 Q 1444 (1459)
Q Consensus 1444 ~ 1444 (1459)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 3
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=373.59 Aligned_cols=216 Identities=25% Similarity=0.406 Sum_probs=182.8
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||+| .++..|+++|+.+... .+.++..+ .+.+.++.+|+..........||||||||++|||||+++|
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999998 6788999999975321 12111111 1122333335544445555689999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999998764 47999999999999865 8999999999999999997653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=382.14 Aligned_cols=220 Identities=24% Similarity=0.375 Sum_probs=187.7
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
||||++.+|+. |++||+.+... .+.++..+ ...+.++.+|++.........||||||||++|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999975421 12222111 1233444446665566667789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
++|++||||||||+||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...|
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988654 7899999999999776 89999999999999999999998776544
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=373.78 Aligned_cols=219 Identities=25% Similarity=0.459 Sum_probs=188.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||+| .+++.|+++|+.+... .+.++..+ ...+.++.+||+..+......||||||||++|||||+.+|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 4667899999975321 12222111 1223333446665566666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999988753 7899999999999988999999999999999999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=374.25 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=186.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCC--CCChHHHhcc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGR 1299 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~ 1299 (1459)
.|+++||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 3445678899
Q ss_pred cEEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1300 FAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1300 i~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
++|+||+| .+|+.|+++|+.+.. ..+.++.++. ..+.++.+|++........+||||||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999998 578899999996531 1232222221 2233444566666667778999999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988753 799999999999997 4999999999999999999999864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=368.90 Aligned_cols=220 Identities=30% Similarity=0.397 Sum_probs=182.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh---HHHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1299 (1459)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987654 346889
Q ss_pred cEEEeCCCcCCC-ccHHHhcCcCCCCCh---HHHH---HHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1300 FAVVPQSPFLFE-GSLRDNLDPFHMNDD---LKIW---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1300 i~~VpQdp~lf~-gTIReNLdp~~~~~d---~ei~---~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
++|+||++.+|+ .|+++|+........ ..+. ..-++....+.++.+|++........+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999887 599999964211000 0000 000111223444555776666777788999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999998864 37899999999999865 8999999999999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=379.10 Aligned_cols=217 Identities=28% Similarity=0.410 Sum_probs=184.7
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+|+||+|.+|. .|++||+.++.. .++.+..+ ...+.++.+|+.........+||+|||||++|||||+.+|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 99999999986 599999975332 12222211 1223344445554444455579999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
++|+|||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999998874 47899999999999976 999999999999999999999764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=363.70 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=180.8
Q ss_pred cEEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH---H
Q 000503 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1296 (1459)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEeCCCcCCCc-cHHHhcCcC---CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1297 R-GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1297 R-~~i~~VpQdp~lf~g-TIReNLdp~---~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
| ++++|+||+|.+|++ |+++|+.+. .....++.. ..+.+.++.+|++........+||||||||++||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 3 679999999999876 999998642 111222111 122344555577766677777899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEEEecC
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~ 1438 (1459)
++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.|+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998863 4799999999999999999999999999998775
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=370.71 Aligned_cols=224 Identities=24% Similarity=0.337 Sum_probs=186.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCC--CCChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII--NTPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~--~i~~~ 1294 (1459)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 4699999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhcccEEEeCCCcCCCc-cHHHhcCcCC---CC--Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---MN--DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~g-TIReNLdp~~---~~--~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
.+|++++|+||+|.+|++ |+++|+.... .. .. +++.++++..++.+.+ .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-----KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-----hhhhccChhhCCHHHHH
Confidence 788999999999999976 9999996421 10 11 2233334433332111 12345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 8999999999999999999998
Q ss_pred ccCCcHHHH
Q 000503 1444 QDECSVFSS 1452 (1459)
Q Consensus 1444 ~~~~~~f~~ 1452 (1459)
+++...+.+
T Consensus 237 ~~~~~~~~~ 245 (253)
T PRK14267 237 ENPEHELTE 245 (253)
T ss_pred hCCCcHHHH
Confidence 765433433
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=365.63 Aligned_cols=492 Identities=19% Similarity=0.195 Sum_probs=338.3
Q ss_pred HHhhhhhhhhhhccccCCC---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 000503 914 SRNGNDLWLSYWVDTTGSS---QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFF 990 (1459)
Q Consensus 914 ~~~~~~~wl~~w~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff 990 (1459)
.....++|+..|.....+. .........+.+|.+++.+...+...+.++......+.-..+-+.++++.+...-.|+
T Consensus 58 ~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~ 137 (604)
T COG4178 58 LSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYR 137 (604)
T ss_pred HHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 3344566777775432110 0011122335677777777777777888888888899989999999999988774443
Q ss_pred cccCh-----hhHHHHHhhhhhhhhchhhHHHHHHHHHHHhHHHhhhHHHH--------------HHH----HHHHHHHH
Q 000503 991 DQTPG-----GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY--------------VQV----FFLLLLVP 1047 (1459)
Q Consensus 991 ~~~~~-----G~ilnrfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~--------------~~~----~~~~~~~p 1047 (1459)
..... -+.=+|+.+|+...-+..-.....++.+++.++...+++.- ..| |++++.++
T Consensus 138 l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~ 217 (604)
T COG4178 138 LAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAI 217 (604)
T ss_pred HHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHH
Confidence 33221 23457999998876654444444444444444433332221 111 11112222
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhhchhHhHHHhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 1048 FW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126 (1459)
Q Consensus 1048 l~-~~~~~~~~~y~~~sr~l~~l~~~~~spl~~~~~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1126 (1459)
+. .+..++.+...+..-+..+.|..-|. .+.-.-+....|-.|+-|+...++..+..+.-.+.+......+.+++
T Consensus 218 ~~s~~~~~iGr~Li~LN~~~~~~EA~fR~----~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~ 293 (604)
T COG4178 218 SASLLTHLIGRPLIRLNFERQKLEADFRY----SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLT 293 (604)
T ss_pred HHHHHHHHHccccccccHHHHHHHHHHHH----HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 21 12234445444544455555554443 33445567788889999988877777766666665555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----
Q 000503 1127 LRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV---- 1202 (1459)
Q Consensus 1127 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~---- 1202 (1459)
..-...+-+.+.+-.+.+ ......+..+.|.++.+.....++...++|++..+.++.+-...+.|+.++.+.
T Consensus 294 ~~~~gy~~~s~v~P~li~----ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~ 369 (604)
T COG4178 294 WFQLGYGWLSVVLPILIA----APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAA 369 (604)
T ss_pred HhhhhhhHHHHHHHHHhc----cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 433332222221111111 011123456778888888888889999999999999999999999999998732
Q ss_pred --CccccccCC-CCCCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCc
Q 000503 1203 --PQEELCGYQ-SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1459)
Q Consensus 1203 --~~e~~~~~~-~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1279 (1459)
+++...... .....-..+..|+|+|++..-+++. ..++++||+|+|||.+-|.|+||||||||+++|.|+.+--+|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G 448 (604)
T COG4178 370 QMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448 (604)
T ss_pred cCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCC
Confidence 222111100 0000000147899999999987654 689999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHhcccEEEeCCCcCCCccHHHhcCc-CCC--CChHHHHHHHHHhcHHHHHHhC-CCchhhhcCC
Q 000503 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHM--NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESG 1355 (1459)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp-~~~--~~d~ei~~aL~~~~l~~~i~~l-GLdt~v~e~G 1355 (1459)
+|..-. -+++-++||.|.+-.||+||-|.+ ... ++|+|+.++|.+|+|.+.++++ +.+.. .
T Consensus 449 ~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W----~ 513 (604)
T COG4178 449 RISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW----D 513 (604)
T ss_pred ceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcH----h
Confidence 986631 235899999999999999999853 332 6899999999999999999987 44442 2
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEe
Q 000503 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1429 (1459)
Q Consensus 1356 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~ 1429 (1459)
.-||+|||||+++||.+|++|++++||||||+||.+++..+.+.++++..++|||.|+||.....-.++.+-++
T Consensus 514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 35999999999999999999999999999999999999999999999999999999999987777677766654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=375.84 Aligned_cols=218 Identities=29% Similarity=0.448 Sum_probs=185.0
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC----CChHH
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1295 (1459)
++++|++++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 469999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcccEEEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000503 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1296 lR~~i~~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LA 1369 (1459)
.|++++||||+| .+|+.|+++|+.+... .+.++..+ ...+.++.+||+. ........||||||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 6888899999964321 23332221 1233445557753 34666778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999988643 7899999999999865 899999999999999999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=384.00 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=191.5
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCC--ceEEECCEeCCCCChHHHh
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--GQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~--G~I~IDG~di~~i~~~~lR 1297 (1459)
.|.|+++||+++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++.+.+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 467999999999964 369999999999999999999999999999999999999999 999999999987765 35
Q ss_pred cccEEEeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1298 GRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
+++++|+|++.+|+. |+++|+.+.- ..+++++.+ ...+.++.+||+...+....+||||||||++|||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 789999999999987 9999997532 123233222 1233445557777777777899999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC---CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcH
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK---GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1449 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~---~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~ 1449 (1459)
++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~ 233 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcH
Confidence 99999999999999999999999999987643 6899999999999765 8999999999999999999999887655
Q ss_pred H
Q 000503 1450 F 1450 (1459)
Q Consensus 1450 f 1450 (1459)
|
T Consensus 234 ~ 234 (362)
T TIGR03258 234 F 234 (362)
T ss_pred H
Confidence 5
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=376.07 Aligned_cols=218 Identities=27% Similarity=0.416 Sum_probs=191.1
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++||+.+|+ ...+++|+||+|++||.+.+.|||||||||++++|.||..|++|+|.+||.|+..+|++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 35799999999999999999999999999999999999999999999999999999986 5789
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC----CChH----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM----NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~----~~d~----ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
++|+|+..||+- ||++|+.++-. ..++ ++.++|+.++| +..-......|||||+||++||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L---------~~~~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGL---------EGFADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCc---------hhhhhhChhhhChHHHHHHHHHHH
Confidence 999999999986 99999977533 2333 34455555544 444455667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1448 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~ 1448 (1459)
|..+|++|+||||-|+||.+-...++.-+++.. .+.|.|.|||+-+.... +|||+||++|+|...|+|+|+..+|.+
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 999999999999999999999999988887653 38999999999987665 799999999999999999999999987
Q ss_pred HHH
Q 000503 1449 VFS 1451 (1459)
Q Consensus 1449 ~f~ 1451 (1459)
.|-
T Consensus 231 ~fV 233 (352)
T COG3842 231 RFV 233 (352)
T ss_pred HHH
Confidence 764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=348.35 Aligned_cols=196 Identities=29% Similarity=0.399 Sum_probs=167.7
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999975 5699999999999999999999999999999999999999999999999988443 45799
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCC---Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMN---DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~---~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
||+|++.||+- ||++|+...-+. +. +...+.|+.+ ||...-+.-...||||||||++|||||+
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V---------gL~~~~~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV---------GLAGFEDKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc---------CCcchhhcCccccChHHHHHHHHHHHHh
Confidence 99999999997 999998654322 11 2233334444 5555556677789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeC--CeE
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH--GHL 1433 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~--G~I 1433 (1459)
.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||++++... +|||+||.+ |+|
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999887764 36999999999998665 899999999 555
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=362.82 Aligned_cols=202 Identities=28% Similarity=0.390 Sum_probs=171.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1299 (1459)
++++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEeCCCcCCC-ccHHHhcCcCC---CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1300 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1300 i~~VpQdp~lf~-gTIReNLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
++|+||+|.+|. .|++||+.... ... ++++.++ ++.+|++........+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~---------l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAA---------LEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999887 49999996431 111 1223333 344455555555556899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeE
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~I 1433 (1459)
|+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998764 47899999999999976 899999999985
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=367.18 Aligned_cols=226 Identities=26% Similarity=0.378 Sum_probs=188.5
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCCChHHH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVRDL 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~~~~l 1296 (1459)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEeCCCcCC-CccHHHhcCcCCCC-----C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1297 RGRFAVVPQSPFLF-EGSLRDNLDPFHMN-----D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1297 R~~i~~VpQdp~lf-~gTIReNLdp~~~~-----~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
|++++|+||+|.+| ..|++||+.+.... . ++++.++++.+++.+.+ +........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-----KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCCcccCCHHHHHHH
Confidence 99999999999755 57999999643110 1 12334444444432211 1234455668999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 9999999999999999999999999999999999987678999999999999865 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000503 1446 ECSVFSSFV 1454 (1459)
Q Consensus 1446 ~~~~f~~l~ 1454 (1459)
+...+.+.+
T Consensus 236 ~~~~~~~~~ 244 (250)
T PRK14247 236 PRHELTEKY 244 (250)
T ss_pred CccHHHHHH
Confidence 554454433
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=379.47 Aligned_cols=226 Identities=23% Similarity=0.390 Sum_probs=189.2
Q ss_pred cEEEEEEEEEecCC-----------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC
Q 000503 1222 LIEFQNVTMRYKPS-----------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~-----------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~ 1290 (1459)
-++++|++++|+.. ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2468999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhcccEEEeCCC--cCCC-ccHHHhcCc----CC-CCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCC
Q 000503 1291 TPVRD---LRGRFAVVPQSP--FLFE-GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISF 1358 (1459)
Q Consensus 1291 i~~~~---lR~~i~~VpQdp--~lf~-gTIReNLdp----~~-~~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~L 1358 (1459)
++.+. +|++++||+|+| .+++ .||++|+.. +. ..+.++..+. ..+.++.+|++ .........|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCChHHhcCCcccC
Confidence 87544 678999999999 4774 699999853 11 1233332221 12344445664 3456667789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEE
Q 000503 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVE 1435 (1459)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE 1435 (1459)
|||||||++|||||+.+|++||+||||++||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 89999999999999
Q ss_pred ecChhHHhccCCcHHHH
Q 000503 1436 QGNPQTLLQDECSVFSS 1452 (1459)
Q Consensus 1436 ~G~p~eLl~~~~~~f~~ 1452 (1459)
.|+++++++++...|.+
T Consensus 243 ~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 243 LGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EcCHHHHHcCCCCHHHH
Confidence 99999999876555554
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=361.84 Aligned_cols=206 Identities=29% Similarity=0.446 Sum_probs=174.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 469999999999999999999999999999999999999999999999999986543 4678999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||+|.+|. .|+++|+..... .+.++.. ....+.++.+|++........+||||||||++|||||+++|++
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 599999964311 1111111 1123445555776666666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998864 37899999999998866 8999999999998875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.62 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=175.7
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH----H
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----L 1296 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----l 1296 (1459)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1297 RGRFAVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1297 R~~i~~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
|++++|+||+|.+|.+ |++||+..... ....+. ...+.+.++.+|++........+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 6789999999999987 99999975321 111111 12234455566787777777788999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeE
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~I 1433 (1459)
+++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=374.16 Aligned_cols=218 Identities=25% Similarity=0.374 Sum_probs=183.8
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC---------
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--------- 1290 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--------- 1290 (1459)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CChHHHhcccEEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCc-h
Q 000503 1291 ---------------TPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE-T 1349 (1459)
Q Consensus 1291 ---------------i~~~~lR~~i~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLd-t 1349 (1459)
.+...+|++++||||+| .+|..|++||+.+.. ..+.+++.+. ..+.++.+||+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~ 157 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELVGLDES 157 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCChh
Confidence 13457789999999987 688889999997542 1233333221 22344445775 4
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEE
Q 000503 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILI 1427 (1459)
Q Consensus 1350 ~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlV 1427 (1459)
..+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~v 237 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEE
Confidence 5667777899999999999999999999999999999999999999999998764 48999999999998765 899999
Q ss_pred EeCCeEEEecChhHHhcc
Q 000503 1428 LDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1428 l~~G~IvE~G~p~eLl~~ 1445 (1459)
|++|++++.|+++++.++
T Consensus 238 l~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 238 FKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EECCEEEEECCHHHHhcC
Confidence 999999999999998865
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=325.27 Aligned_cols=211 Identities=26% Similarity=0.424 Sum_probs=182.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|.+++|.++|.. .+ -..+++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 568899999963 23 357899999999999999999999999999999999999999999999888774 467999
Q ss_pred EeCCCcCCCc-cHHHhcCcCC----CC---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFH----MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~----~~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+.||.-||.- ||++|+..+- +. ..+.+..++.++|+..+.+. -...||||||||++|||+|+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~R---------LP~~LSGGqRQRvALARclvR 146 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR---------LPGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhh---------CccccCchHHHHHHHHHHHhc
Confidence 9999999986 9999987542 22 23456667777776655443 345799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1448 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~ 1448 (1459)
+.+||+||||.|+||+.-...+...+.+.. ++.|+++|||..+.++. +||++++++|||++.|+-+++++.++.
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999999887764 57899999999998876 899999999999999999999987653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=365.73 Aligned_cols=219 Identities=22% Similarity=0.368 Sum_probs=187.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 369999999999999999999999999999999999999999999999999988776644 56799
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCCChHHH-------HHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMNDDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~~d~ei-------~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
|+||++.+|++ |++||+....... ..+ .....+..+.+.++.+|++.........||||||||++||||++
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRD-KSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcc-cccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 99999999987 9999997532110 000 00011122345555567877777777889999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999987678999999999999976 89999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=368.87 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=186.7
Q ss_pred CCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--C
Q 000503 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1291 (1459)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i 1291 (1459)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3467999999999963 4699999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHHHhcccEEEeCCCcCCCccHHHhcCcCCC---C--C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhH
Q 000503 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1362 (1459)
Q Consensus 1292 ~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~--~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQ 1362 (1459)
+...+|++++|+||+|.+|++|+++|+.+... . + ++++.++++.+++.+.+ ....+..+.+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-----KDRLHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHH
Confidence 45678899999999999999999999964211 1 1 12233344444332211 123456677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999966 79999999999999999999
Q ss_pred HhccCC
Q 000503 1442 LLQDEC 1447 (1459)
Q Consensus 1442 Ll~~~~ 1447 (1459)
+..++.
T Consensus 249 ~~~~~~ 254 (267)
T PRK14235 249 MFTNPD 254 (267)
T ss_pred HHhCCC
Confidence 986544
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=371.47 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=187.7
Q ss_pred cEEEEEEEEEecCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1222 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||+| .++..|+.+|+.+.. ..+++++.+. ..+.++.+|++.........||||||||++|||||+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999998 467789999997431 1233332211 12233333555555556678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccC
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|++++++++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999987753 78999999999999889999999999999999999998643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=350.84 Aligned_cols=191 Identities=31% Similarity=0.389 Sum_probs=161.8
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------cEEE
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 676 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y 676 (1459)
.+.+++++..|.. ..+|+|+||+|++||+++|+|||||||||||++|.|..+|++|+|.++| .+||
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 4678888888764 3459999999999999999999999999999999999999999999987 5899
Q ss_pred EcCCCCCCC-CCHHHHhccCCCCC-------HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHH
Q 000503 677 VPQVPWILS-GTIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1459)
Q Consensus 677 ~~Q~~~l~~-~ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARal 748 (1459)
|+|++-|+. -||+|||.+|-+.. +++.++.++..+|...-+..| ..||||||||||||||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 999998775 69999999986541 346777888888876555554 48999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeC--CeEE
Q 000503 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK--GQVK 812 (1459)
Q Consensus 749 y~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~--G~i~ 812 (1459)
..+|++|||||||+|||+.|..++-+.++.--...++|+++|||++++.- -+|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999998877644322334689999999998865 4999999998 4553
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=365.22 Aligned_cols=216 Identities=25% Similarity=0.421 Sum_probs=185.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1459)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 56899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
|+||++.+|++ |+++|+..... ...++. ...+.+.++.+|++........+||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKER-----EEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 99999964321 111111 1123445556688777777778999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999998764 47899999999987766 899999999999999999998753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=370.60 Aligned_cols=227 Identities=26% Similarity=0.345 Sum_probs=189.3
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHhc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRG 1298 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~ 1298 (1459)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876643 3578
Q ss_pred ccEEEeCCCcCCCc-cHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1299 RFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~g-TIReNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
+++|+||++.+|++ |+++|+.+. ...+.++. .....+.++.+|++.........||||||||++||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL-----HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999999999987 999998642 11111111 111233344456665556666789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+++....
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 239 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRV 239 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHH
Confidence 99999999999999999999999999987643 7899999999999876 89999999999999999999987654444
Q ss_pred HHHHH
Q 000503 1451 SSFVR 1455 (1459)
Q Consensus 1451 ~~l~~ 1455 (1459)
..++.
T Consensus 240 ~~~~~ 244 (269)
T PRK11831 240 RQFLD 244 (269)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=363.27 Aligned_cols=217 Identities=29% Similarity=0.468 Sum_probs=186.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC--ChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT--PVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i--~~~~lR~~i 1300 (1459)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 4699999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||++.+|. .|+++|+.+.. ..+.++.. ....+.++.+|++.........||+|||||++||||++++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 99999999886 59999996531 11121111 1223455566887777777788999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|++++|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999998764 47999999999999975 8999999999999999999998654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=383.90 Aligned_cols=220 Identities=28% Similarity=0.393 Sum_probs=187.3
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 3899999999964 3599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
||||++.+|+. |++||+.+... .+.++..+ ...+.++.+|++........+||||||||++|||||+++|+
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999976 99999975321 12222111 12334444566666666667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
+||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++...|
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999987643 7899999999998865 89999999999999999999998776544
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=367.98 Aligned_cols=223 Identities=27% Similarity=0.389 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1459)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC---CCh-----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---NDD-----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~~d-----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|+.++|+||+|.+|++|+++|+.+... ..+ +++.++++.++++.. .....+....+||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-----TKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-----hHHHhccChhhCCHHHHHHH
Confidence 67889999999999999999999975321 111 122333333333210 01233456678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+++||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987778999999999999876 899999999999999999999876
Q ss_pred CCcHHH
Q 000503 1446 ECSVFS 1451 (1459)
Q Consensus 1446 ~~~~f~ 1451 (1459)
+.-.|.
T Consensus 237 ~~~~~~ 242 (251)
T PRK14251 237 PKKQIT 242 (251)
T ss_pred CCCHHH
Confidence 543343
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.08 Aligned_cols=227 Identities=26% Similarity=0.383 Sum_probs=189.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC--------h
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--------V 1293 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--------~ 1293 (1459)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEeCCCcCCC-ccHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~-gTIReNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~L 1368 (1459)
..+|++++|+||+|.+|+ .|++||+... .....++..+ ...+.++.+|++........+||||||||++|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 567889999999999886 5999999642 1112111111 12345555677766677778999999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 235 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999998764 47899999999999976 8999999999999999999998654
Q ss_pred Cc-HHHHHHH
Q 000503 1447 CS-VFSSFVR 1455 (1459)
Q Consensus 1447 ~~-~f~~l~~ 1455 (1459)
.- ..+.++.
T Consensus 236 ~~~~~~~~~~ 245 (250)
T PRK11264 236 QQPRTRQFLE 245 (250)
T ss_pred CCHHHHHHHH
Confidence 32 3344443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=381.35 Aligned_cols=221 Identities=25% Similarity=0.444 Sum_probs=189.6
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..++++|++++|.. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+||+|++.+|+. |++||+.+.-. .++.++.+ .+.+.++.+|++.........||||||||++|||||+++|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999975321 22222211 1223344446666666677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
++||||||||+||..+.+.+.+.|++..+ +.|+|+|||+.+.+.. ||||++|++|+|++.|+|+++.+++...|
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 99999999999999999999999988653 7899999999998765 89999999999999999999998876555
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=364.77 Aligned_cols=216 Identities=27% Similarity=0.378 Sum_probs=189.5
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcc
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1459)
.+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 3569999999852 4599999999999999999999999999999999999999999999998 3
Q ss_pred cEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1300 i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+ +.++.+++.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865444445566778888888877766 67888888888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHH-HHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHH
Q 000503 1378 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1453 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~-I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l 1453 (1459)
||||||||++||+++.+.+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+.. +.|.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~~~~ 255 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLR-PDFSSK 255 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcc-hHHHHH
Confidence 9999999999999999988765 45555689999999999999889999999999999999999998643 345443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=364.61 Aligned_cols=218 Identities=30% Similarity=0.483 Sum_probs=186.4
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC----------
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---------- 1292 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---------- 1292 (1459)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHHhcccEEEeCCCcCCC-ccHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1293 ---VRDLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1293 ---~~~lR~~i~~VpQdp~lf~-gTIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
...+|++++++||++.+|+ .|+++|+.... ....++.. ..+.+.++.+|++...+.....|||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 2467889999999999886 69999996421 11111111 12344555567777677777889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|++|||||+++|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|++++.|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987653 7899999999999865 89999999999999999999
Q ss_pred HhccCC
Q 000503 1442 LLQDEC 1447 (1459)
Q Consensus 1442 Ll~~~~ 1447 (1459)
+.+++.
T Consensus 234 ~~~~~~ 239 (252)
T TIGR03005 234 IFRQPK 239 (252)
T ss_pred HhcCCC
Confidence 987654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=360.98 Aligned_cols=209 Identities=28% Similarity=0.442 Sum_probs=176.8
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 346778999
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+|+||+|.+|++ |++||+.... ..+.++..+ ...+.++.+|++........+||||||||++||||++++|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999985421 112211111 1233444456666666677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999998764 47999999999998876 8999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=366.91 Aligned_cols=221 Identities=23% Similarity=0.367 Sum_probs=187.1
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC--------
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-------- 1291 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i-------- 1291 (1459)
.+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 3599999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHHHhcccEEEeCCCcCCCc-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhh-hcCCCCCCh
Q 000503 1292 -----PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSV 1360 (1459)
Q Consensus 1292 -----~~~~lR~~i~~VpQdp~lf~g-TIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLdt~v-~e~G~~LSg 1360 (1459)
....+|++++|+||+|.+|++ |++||+.... ...+.+. +..+.+.++.+|++... +.....|||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEA-----RERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 135678899999999999985 9999996421 1111111 11223445555776654 566778999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
|||||++|||||+++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998764 48999999999999987 89999999999999999
Q ss_pred hhHHhccCC
Q 000503 1439 PQTLLQDEC 1447 (1459)
Q Consensus 1439 p~eLl~~~~ 1447 (1459)
++++.+.+.
T Consensus 236 ~~~~~~~~~ 244 (257)
T PRK10619 236 PEQLFGNPQ 244 (257)
T ss_pred HHHhhhCcc
Confidence 999986543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=348.08 Aligned_cols=178 Identities=33% Similarity=0.566 Sum_probs=166.3
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
+||+|.+|+.|++||+ ..+||+|||||++||||++++|++||||
T Consensus 80 ~~q~~~~~~~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD 123 (178)
T cd03247 80 LNQRPYLFDTTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123 (178)
T ss_pred EccCCeeecccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 3479999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCeEEEec
Q 000503 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G 1437 (1459)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999877789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=360.71 Aligned_cols=207 Identities=25% Similarity=0.385 Sum_probs=175.8
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH---Hh
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1459)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 46999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cccEEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1298 -GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1298 -~~i~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
++++|+||+|.+|+ .|++||+.... ..+..+. .+ ...+.++.+|++.........||||||||++||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~---~~--~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA---KE--RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHH---HH--HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 68999999999986 59999996521 1111111 11 123455556777767777778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEE
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLV 1434 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~Iv 1434 (1459)
+++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=367.77 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=186.8
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CCh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1293 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1293 (1459)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 469999999999999999999999999999999999997 589999999999864 346
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
..+|+.++|+||+|.+|.+|+++|+.... ..++ +++.++++.+++.+.+ +...+.....||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-----KDDLHKSALTLSGGQQQR 171 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----hhhhcCCcccCCHHHHHH
Confidence 67889999999999999999999996531 1111 2233444444433221 234566777899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
++||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999865 89999999999999999999987
Q ss_pred cCC
Q 000503 1445 DEC 1447 (1459)
Q Consensus 1445 ~~~ 1447 (1459)
.+.
T Consensus 252 ~~~ 254 (267)
T PRK14237 252 NPK 254 (267)
T ss_pred CCC
Confidence 543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=368.15 Aligned_cols=219 Identities=23% Similarity=0.407 Sum_probs=187.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|++..+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCc--CCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp~--lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||+|. ++..|+++|+.+... ...++..+ .+.+.++.+|++........+||+|||||++||||++++|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999994 445689999864321 12222111 1223344446665556667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999988643 7899999999999988999999999999999999999765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=381.95 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=189.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcC-CCccHHHhcCcCCC-----C---C---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000503 1302 VVPQSPFL-FEGSLRDNLDPFHM-----N---D---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1302 ~VpQdp~l-f~gTIReNLdp~~~-----~---~---d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LA 1369 (1459)
++||++.+ |+.|++||+.+... . . ++++.++++.++ +..........||||||||++||
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vg---------l~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG---------VAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcC---------CchhhcCChhhCCHHHHHHHHHH
Confidence 99999987 57799999965321 1 1 223444555444 44444445568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
|||+++|+||||||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+|++++..+
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~- 230 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD- 230 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcH-
Confidence 99999999999999999999999999999998875 47899999999999965 8999999999999999999998643
Q ss_pred cHHHHHH
Q 000503 1448 SVFSSFV 1454 (1459)
Q Consensus 1448 ~~f~~l~ 1454 (1459)
.+.+++
T Consensus 231 -~l~~~~ 236 (402)
T PRK09536 231 -TLRAAF 236 (402)
T ss_pred -HHHHHh
Confidence 455544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=370.09 Aligned_cols=220 Identities=28% Similarity=0.460 Sum_probs=188.6
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCC---ceEEECCEeCCCCChHHHh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~---G~I~IDG~di~~i~~~~lR 1297 (1459)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996544469999999999999999999999999999999999999987 8999999999888777889
Q ss_pred cccEEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1298 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1298 ~~i~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
++++|+||+| .+++.|++||+.+.. ..++++..+ ...+.++.+|++...+....+||+|||||++|||||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999998 466889999997531 122322211 122334444666666667779999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.++
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988753 7899999999999988999999999999999999998764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=371.43 Aligned_cols=218 Identities=30% Similarity=0.457 Sum_probs=185.1
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----ChHH
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~ 1295 (1459)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000503 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1296 lR~~i~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LA 1369 (1459)
+|++++|+||+| .+|+.|+++|+.+.. ..++++..+ ...+.++.+|++. ........||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 678899999996431 122222221 1233445557763 45666778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||++++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 37899999999999865 899999999999999999998764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=372.75 Aligned_cols=221 Identities=25% Similarity=0.388 Sum_probs=185.2
Q ss_pred CccEEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC----C-
Q 000503 1220 QGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----T- 1291 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i- 1291 (1459)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHHHhcccEEEeCCC--cCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHH
Q 000503 1292 PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1292 ~~~~lR~~i~~VpQdp--~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQr 1365 (1459)
+...+|++++|+||+| .+|..|+++|+.+... ...++..+ + +.+.++.+|++ ...+.....||||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~---~--~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK---K--VPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH---H--HHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 4567888999999998 4678899999964321 12222211 1 22344444773 44566677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHH
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987643 7899999999998865 899999999999999999998
Q ss_pred hcc
Q 000503 1443 LQD 1445 (1459)
Q Consensus 1443 l~~ 1445 (1459)
.++
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=366.75 Aligned_cols=221 Identities=26% Similarity=0.405 Sum_probs=184.3
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCCCC--hHH
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTP--VRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i~--~~~ 1295 (1459)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcccEEEeCCCcCCCccHHHhcCcCC---CC--ChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN--DDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~gTIReNLdp~~---~~--~d~ei~~aL~~~~l~~~i~~lGLd----t~v~e~G~~LSgGQrQrl 1366 (1459)
+|++++|+||+|.+|++|+++|+.+.. .. ..++.. ....+.++.+|++ +.++..+.+||||||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD-----EIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 788999999999999999999996431 11 111111 0122333334543 245566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987678999999999999876 899999999999999999999987
Q ss_pred CCcHH
Q 000503 1446 ECSVF 1450 (1459)
Q Consensus 1446 ~~~~f 1450 (1459)
+...+
T Consensus 239 ~~~~~ 243 (251)
T PRK14244 239 PQSSK 243 (251)
T ss_pred CCChH
Confidence 65544
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=366.22 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcc---CCC--CCceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPI--CGGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl---~~~--~~G~I~IDG~di~~i--~~~ 1294 (1459)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 4599999999999999999999999999999999997 454 589999999999764 346
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCC---CC-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||+|.+|++|+++|+.+.. .. .. +++.++++.+++.+. ++...+..+.+||||||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-----VKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-----hhhhhhCCcccCCHHHHHHH
Confidence 7788999999999999999999996421 11 11 123333333332211 12345666778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999999988778999999999999865 899999999999999999999876
Q ss_pred CCc
Q 000503 1446 ECS 1448 (1459)
Q Consensus 1446 ~~~ 1448 (1459)
+..
T Consensus 236 ~~~ 238 (250)
T PRK14245 236 PEK 238 (250)
T ss_pred CCC
Confidence 543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=375.22 Aligned_cols=227 Identities=25% Similarity=0.403 Sum_probs=187.4
Q ss_pred cEEEEEEEEEecCC--------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh
Q 000503 1222 LIEFQNVTMRYKPS--------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1293 (1459)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2468999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcccEEEeCCCc--CCCc-cHHHhcCc----CCCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhH
Q 000503 1294 R---DLRGRFAVVPQSPF--LFEG-SLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1362 (1459)
Q Consensus 1294 ~---~lR~~i~~VpQdp~--lf~g-TIReNLdp----~~~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQ 1362 (1459)
. .+|+++++|||+|. +++. |+.+|+.. .......+. +....+.++.+|++. ........|||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 3 56889999999994 5553 88888742 111122111 112234445556643 3455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
|||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 7899999999999976 899999999999999999
Q ss_pred hHHhccCCcHHHHH
Q 000503 1440 QTLLQDECSVFSSF 1453 (1459)
Q Consensus 1440 ~eLl~~~~~~f~~l 1453 (1459)
+++++++...|.+.
T Consensus 240 ~~~~~~p~hpyt~~ 253 (327)
T PRK11308 240 EQIFNNPRHPYTQA 253 (327)
T ss_pred HHHhcCCCCHHHHH
Confidence 99998776555543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=353.98 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=178.5
Q ss_pred EEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcc
Q 000503 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1459)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1300 i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
++|+||+|.+|++|++||+.+....++++.+++++.+++.+.+..+ |+++.+++.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876555566778888888998888877 89999988889999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHH-HHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCe
Q 000503 1378 VLCLDECTANVDAQTASILQN-AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1432 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~-~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~~G~ 1432 (1459)
+++|||||++||.++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 566553 4689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=365.88 Aligned_cols=219 Identities=22% Similarity=0.378 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC--CC---CCceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PI---CGGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~---~~G~I~IDG~di~~i--~~~ 1294 (1459)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. .| ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 36999999999999999999999999999999999995 36 499999999998653 345
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcC----CCCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~----~~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|+.++|+||+|.+|+.|++||+.+. +...+ +++.++++.+++.+. +....+....+||+|||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-----VKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-----HHHHHhcCcccCCHHHHHHH
Confidence 678899999999999999999998642 11111 223334444443221 12345566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|++|||||||++||.++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987667999999999998865 899999999999999999999876
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
+.
T Consensus 238 ~~ 239 (252)
T PRK14239 238 PK 239 (252)
T ss_pred CC
Confidence 54
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=368.04 Aligned_cols=221 Identities=25% Similarity=0.361 Sum_probs=183.4
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH----hcc
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGR 1299 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~ 1299 (1459)
.++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888854 358999999999999999999999999999999999999999999999999988776543 468
Q ss_pred cEEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1300 FAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1300 i~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
++|+||+|.+|+ .|+++|+.... .....+.. ....+.++.+|++........+||||||||++||||++++
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999885 59999996421 11111111 1123344445666556666678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++++...|.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 257 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYV 257 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHH
Confidence 99999999999999999999999998764 37999999999999865 899999999999999999999876654443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=366.37 Aligned_cols=222 Identities=23% Similarity=0.379 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999963 4599999999999999999999999999999999999985 799999999998653 345
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCC---CCChH----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~---~~~d~----ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~ 1367 (1459)
.+|+.++|+||++.+|+.|+++|+.+.. ..+.+ ++.++++.+++.+. ++.........||||||||++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-----TSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-----hhhhhcCChhhCCHHHHHHHH
Confidence 6788999999999999999999996421 11221 23334444333211 123345556689999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|+++++.+++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999987668999999999999876 8999999999999999999998765
Q ss_pred CcHH
Q 000503 1447 CSVF 1450 (1459)
Q Consensus 1447 ~~~f 1450 (1459)
...+
T Consensus 245 ~~~~ 248 (258)
T PRK14268 245 REKS 248 (258)
T ss_pred CCHH
Confidence 4433
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=365.76 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=184.7
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC--C---CCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1294 (1459)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4899999999964 369999999999999999999999999999999999997 3 59999999999864 4456
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC----CChHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~----~~d~e----i~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||+|.+|++|+++|+.+... .++++ +.++++..++.+.+ ....+....+||||||||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-----KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhhhhCCcccCCHHHHHHH
Confidence 78899999999999999999999964321 12222 22233333322111 2334566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+|++|||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 9999999999999999999999999999999999987678999999999999876 899999999999999999999876
Q ss_pred CCcH
Q 000503 1446 ECSV 1449 (1459)
Q Consensus 1446 ~~~~ 1449 (1459)
+...
T Consensus 245 ~~~~ 248 (259)
T PRK14274 245 PDDQ 248 (259)
T ss_pred CCCH
Confidence 5543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=365.06 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=185.5
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CCh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1293 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1293 (1459)
|.|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 56999999999964 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCCC----CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
..+|++++|+||+|.+|+.|+++|+..... .+ ++++.++++.+++.+. +....+.....||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-----VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-----hHHHHhcCCCCCCHHHHHH
Confidence 678999999999999999999999964321 11 1223333344333221 1233456667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887668999999999998876 89999999999999999999987
Q ss_pred cCCc
Q 000503 1445 DECS 1448 (1459)
Q Consensus 1445 ~~~~ 1448 (1459)
++..
T Consensus 235 ~~~~ 238 (250)
T PRK14240 235 NPKD 238 (250)
T ss_pred CCCC
Confidence 6543
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=365.19 Aligned_cols=225 Identities=24% Similarity=0.410 Sum_probs=187.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++++||+|.+|+.|+++|+.... ...+ +++.++++..++.+.+ +...+....+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-----KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-----HHHHhCChhhcCHHHHHHH
Confidence 6788999999999999999999997431 1111 1233334444332211 2335566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999999999987778999999999998765 899999999999999999999876
Q ss_pred CCcHHHHH
Q 000503 1446 ECSVFSSF 1453 (1459)
Q Consensus 1446 ~~~~f~~l 1453 (1459)
+...|.+.
T Consensus 236 ~~~~~~~~ 243 (250)
T PRK14262 236 PKNKLTEE 243 (250)
T ss_pred CCChHHHH
Confidence 54445543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=367.43 Aligned_cols=227 Identities=24% Similarity=0.378 Sum_probs=186.6
Q ss_pred EEEEEEEEEecCC-------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH
Q 000503 1223 IEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~ 1295 (1459)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 356999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcccEEEeCCCc--CCC-ccHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000503 1296 ---LRGRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1296 ---lR~~i~~VpQdp~--lf~-gTIReNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQ 1364 (1459)
+|++++|+||+|. +++ .|+++|+... .....++ ....+.+.++.+|++ ...+.....|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q 157 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMVGLRSEDADKLPRQLSGGQLQ 157 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 6788999999983 443 6999998531 1111111 111233455555775 3456677789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||++++|++|++++.|++++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999975 89999999999999999999
Q ss_pred HhccCCcHHHHHH
Q 000503 1442 LLQDECSVFSSFV 1454 (1459)
Q Consensus 1442 Ll~~~~~~f~~l~ 1454 (1459)
+...++...+++.
T Consensus 238 ~~~~~~~~~~~~~ 250 (265)
T TIGR02769 238 LLSFKHPAGRNLQ 250 (265)
T ss_pred HcCCCCHHHHHHH
Confidence 9875432333343
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=362.57 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=186.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH-Hhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1300 (1459)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999963 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCCC----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHMN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~~----~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+++||++.+|++ |++||+...... +.++. +....+.++.+|++.........||||||||++||||++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 999999998885 999999754211 11111 12234556666887777777788999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999998754 48899999999987765 899999999999999999999764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=355.88 Aligned_cols=202 Identities=30% Similarity=0.463 Sum_probs=174.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++||+++|+. .++++|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 778899999
Q ss_pred EeCCCcCCCc-cHHHhcCcCC---CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~---~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||+|.+|.+ |++||+.... ..+. +++.++++.. |++.........||||||||++||||+++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELV---------NLGDRAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---------CCHHHHhCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999986421 1111 2233444444 44433444556799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999987777999999999999975 8999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=378.80 Aligned_cols=222 Identities=27% Similarity=0.426 Sum_probs=189.8
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..++++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 369999999999999999999999999999999999999999999999999988765 47789
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+||+|++.+|+. |++||+.+... .+..++.+ .+.+.++.+|++........+||||||||++|||||+++|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999975421 22222221 1234455557766666677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+|+..++...|-
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 9999999999999999999988877653 37899999999998765 899999999999999999999988776553
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=356.73 Aligned_cols=204 Identities=31% Similarity=0.469 Sum_probs=174.1
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999965334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred eCCCc--CCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1304 PQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1304 pQdp~--lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
||+|. ++..|+++|+.+... .++.+..+ ...+.++.+|++.........||||||||++|||||+++|++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99983 677899999965311 12211111 123444555776666677778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCe
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1432 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~ 1432 (1459)
|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998765 47899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.08 Aligned_cols=222 Identities=23% Similarity=0.367 Sum_probs=184.7
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC--C---CCceEEECCEeCCCC--C
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--P 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~i--~ 1292 (1459)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 469999999999999999999999999999999999986 4 689999999999753 3
Q ss_pred hHHHhcccEEEeCCCcCCC-ccHHHhcCcC----CCCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHH
Q 000503 1293 VRDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1363 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~-gTIReNLdp~----~~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQr 1363 (1459)
...+|++++|+||++.+|. .|+++|+... ...+. +++.++++.+++.+.+ +...+....+||+|||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-----KDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcCcCCHHHH
Confidence 4567889999999999998 5999999642 11111 1223333333332211 1234456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHH
Q 000503 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
||++||||++++|++|||||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999999865 899999999999999999999
Q ss_pred hccCCc
Q 000503 1443 LQDECS 1448 (1459)
Q Consensus 1443 l~~~~~ 1448 (1459)
..++..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14256 235 FTTPEK 240 (252)
T ss_pred HhCCCc
Confidence 876543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=360.45 Aligned_cols=218 Identities=25% Similarity=0.399 Sum_probs=185.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCC------CCChHHH
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII------NTPVRDL 1296 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~------~i~~~~l 1296 (1459)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 36999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hcccEEEeCCCcCCCc-cHHHhcCcC--C--CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1297 RGRFAVVPQSPFLFEG-SLRDNLDPF--H--MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1297 R~~i~~VpQdp~lf~g-TIReNLdp~--~--~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
|++++|+||+|.+|++ |++||+... . ....++.. ..+.+.++.+|++...+....+||||||||++||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 8899999999999976 999999631 1 11222211 123455566688777777778999999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
++++|+|+||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 233 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQT 233 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCccc
Confidence 999999999999999999999999999998764 47999999999999976 89999999999999999999865433
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=366.91 Aligned_cols=217 Identities=28% Similarity=0.470 Sum_probs=185.5
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC-hHHHhcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR~~i~ 1301 (1459)
++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 45999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEeCCCc--CCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp~--lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||+|. +++.|+++|+.+... .+.++..+ .+.+.++.+|++.........||+|||||++|||||+.+|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999985 567899999975421 12222111 1223344457766666677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||||||++||+.+...+.+.|++.. +++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998764 48999999999999988999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=358.36 Aligned_cols=212 Identities=27% Similarity=0.431 Sum_probs=177.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEEE
Confidence 578999999964 36999999999999999999999999999999999999999999999999987633 567889999
Q ss_pred EeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.++++ |+++|+.... ..+.++..+ ...+.++.+|++.........||||||||++||||++.+|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998875 9999996421 111111111 122333344555444555568999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHH
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999987642 7899999999999876 899999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.69 Aligned_cols=217 Identities=26% Similarity=0.410 Sum_probs=185.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 359999999999999999999999999999999999999999999999999988787888999999
Q ss_pred EeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1303 VPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1303 VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+||+| .+|+.|+++|+.... ..+.++..+ ...+.++.+|+..........||||||||++|||||+.+|+
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99998 477889999996422 122222111 12233344455555566667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||||++||+.+.+.+.+.+++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999987653 789999999999986 4899999999999999999999864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=361.28 Aligned_cols=217 Identities=24% Similarity=0.410 Sum_probs=182.1
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH-Hhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1300 (1459)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l-GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+|+||++.+|++ |+++|+..... .+..+..+. +.+.++.+ +++.........||||||||++||||++++|+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999999985 99999975321 122222111 12222223 24333444556899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999998764 48999999999998765 899999999999999999999753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=361.41 Aligned_cols=211 Identities=27% Similarity=0.422 Sum_probs=179.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH-HhcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~ 1301 (1459)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEeCCCcCCCc-cHHHhcCcCC-CC--ChHHHHHHHHHhcHHHHHHhCC-CchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFH-MN--DDLKIWSVLEKCHVKEEVEAVG-LETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~-~~--~d~ei~~aL~~~~l~~~i~~lG-Ldt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||++.+|++ |+++|+.... .. .+++. ..+.++.++ ++........+||||||||++||||++++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 9999996432 11 11111 112222222 444455666689999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999988653 7899999999999986 8999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=369.12 Aligned_cols=219 Identities=28% Similarity=0.486 Sum_probs=184.5
Q ss_pred cEEEEEEEEEecCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----ChH
Q 000503 1222 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1294 (1459)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997422 3699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcccEEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000503 1295 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~L 1368 (1459)
..|++++|+||+| .+|+.|++||+.+.. ..+.++..+ ...+.++.+|++. .......+||||||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 6788999999998 578889999996421 122222211 1234455557763 4566677899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||||+++|++|||||||++||+++.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998764 47899999999999865 899999999999999999998764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=343.78 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=171.9
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
|+++|++..|.. ..+++|+||+|++||+++++|||||||||+|++|.+.++|++|+|.++|
T Consensus 2 I~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 2 IEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred ceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 678999998862 3459999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCC-CCHHHHhccCC---CCCHH----HHHHHHHHhcchh-hHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 SIAYVPQVPWILS-GTIRDNILFGK---NYDPQ----SYSETLKACTLDV-DISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~-~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~-di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
+||||-|+.-||. .||.|||..-. .++++ +.++.++..+|+. +. .......|||||+|||.
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVG 145 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHH
Confidence 6999999999885 59999998642 35654 4556666677754 22 23455699999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcch-hhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+||||..+|+|+|+||||+||||-+.+.+-+....-...-++|+|+|||+++. ++-||||.+|++|+|+..++++++..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999888766432223347899999999987 45699999999999999999999986
Q ss_pred cc
Q 000503 823 SL 824 (1459)
Q Consensus 823 ~~ 824 (1459)
+.
T Consensus 226 ~P 227 (309)
T COG1125 226 NP 227 (309)
T ss_pred Cc
Confidence 53
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=364.23 Aligned_cols=219 Identities=27% Similarity=0.440 Sum_probs=183.5
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 469999999999999999999999999999999999865 789999999999865 3445
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC-C---C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM-N---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~-~---~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||+|.+|++|+++|+..... . . ++.+.++++..++.+. +....+....+||||||||+
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-----VKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-----hHHHHhcCcccCCHHHHHHH
Confidence 67889999999999999999999864311 1 1 1223333333332211 12334566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||+++|+||||||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988667899999999998865 899999999999999999999876
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
+.
T Consensus 254 ~~ 255 (268)
T PRK14248 254 PK 255 (268)
T ss_pred CC
Confidence 43
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=365.71 Aligned_cols=221 Identities=28% Similarity=0.403 Sum_probs=186.8
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CC
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TP 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~ 1292 (1459)
.+.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999964 3699999999999999999999999999999999999884 89999999999875 34
Q ss_pred hHHHhcccEEEeCCCcCCCccHHHhcCcCCC----CCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~----~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
...+|++++|+||++.+|++|+++|+.+... ... +++.++++.+++.+.+ .+..+..+..|||||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-----KDRLHENAFGLSGGQQQ 175 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-----HHHhhCCcccCCHHHHH
Confidence 5678899999999999999999999964311 111 2233444444433221 13455667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|++||||++++|+|+||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999875 8999999999999999999998
Q ss_pred ccCC
Q 000503 1444 QDEC 1447 (1459)
Q Consensus 1444 ~~~~ 1447 (1459)
+++.
T Consensus 256 ~~~~ 259 (272)
T PRK14236 256 TSPA 259 (272)
T ss_pred cCCC
Confidence 7543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=363.12 Aligned_cols=219 Identities=27% Similarity=0.387 Sum_probs=185.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC-----CceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~i--~~~ 1294 (1459)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 46999999999999999999999999999999999999997 69999999998653 456
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC----CCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~----~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||+|.+|+.|++||+.+... ... +.+.++++..++++.+ ....+..+.+||+|||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-----KDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-----hhHhhCCcccCCHHHHHHH
Confidence 78899999999999999999999975321 111 2233334444433222 2345566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999887668999999999999987 699999999999999999999765
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
+.
T Consensus 237 ~~ 238 (251)
T PRK14249 237 PR 238 (251)
T ss_pred CC
Confidence 43
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=363.29 Aligned_cols=221 Identities=23% Similarity=0.393 Sum_probs=187.9
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CChHH
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~~ 1295 (1459)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.+++. .+...
T Consensus 4 l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 789999999964 359999999999999999999999999999999999874 489999999999875 34667
Q ss_pred HhcccEEEeCCCcCCCccHHHhcCcCC---CC-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~gTIReNLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~ 1367 (1459)
+|++++|+||+|.+|++|+++|+.+.. .. +. +++.++++.+++.+.+. ...+..+.+||+|||||++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-----DKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-----HHHhCCcccCCHHHHHHHH
Confidence 899999999999999999999997431 11 11 23444555555544332 2235566789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999988778999999999999887 7999999999999999999998776
Q ss_pred CcHH
Q 000503 1447 CSVF 1450 (1459)
Q Consensus 1447 ~~~f 1450 (1459)
.+.+
T Consensus 237 ~~~~ 240 (250)
T PRK14266 237 KDKR 240 (250)
T ss_pred CChH
Confidence 5544
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=359.73 Aligned_cols=211 Identities=26% Similarity=0.420 Sum_probs=176.2
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh---HHHh
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR 1297 (1459)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cccEEEeCCC--cCC-CccHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000503 1298 GRFAVVPQSP--FLF-EGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1298 ~~i~~VpQdp--~lf-~gTIReNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~LA 1369 (1459)
++++|+||+| .++ ..|+++|+... ....+++.. +.+ ..+.++.+|++ ...+....+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~---~~~-~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR---KEA-VLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHH---HHH-HHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 8999999999 344 46999998532 111111111 110 12345555774 456777788999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
||++.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999988754 7899999999999885 8999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=371.63 Aligned_cols=226 Identities=25% Similarity=0.402 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC---CceEEECCEeCCCCChHHH
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINTPVRDL 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~---~G~I~IDG~di~~i~~~~l 1296 (1459)
.++++|++++|+.. ...+++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cccEEEeCCC--cCCC-ccHHHhcC----cCCCCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCCCCCChhH
Q 000503 1297 R----GRFAVVPQSP--FLFE-GSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQ 1362 (1459)
Q Consensus 1297 R----~~i~~VpQdp--~lf~-gTIReNLd----p~~~~~d~ei~~aL~~~~l~~~i~~lGLd---t~v~e~G~~LSgGQ 1362 (1459)
| ++|+|||||| .+++ -|+.+|+. .....+.++..+ ...+.++.+|++ ..++..+..|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~-----~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE-----ESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 4 4799999999 4555 37777662 222222222111 112223333554 23566777899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
|||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||.+|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 7899999999999975 899999999999999999
Q ss_pred hHHhccCCcHHHH
Q 000503 1440 QTLLQDECSVFSS 1452 (1459)
Q Consensus 1440 ~eLl~~~~~~f~~ 1452 (1459)
+++.+++...|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 9999887655555
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.42 Aligned_cols=218 Identities=28% Similarity=0.410 Sum_probs=184.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1459)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC---C-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~-~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||++.+|+.|+++|+.+... . +. +++.++++.+++.+.+ ....+.....||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-----KDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999974321 1 11 2233444444432211 2234556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987777999999999999876 899999999999999999999865
Q ss_pred C
Q 000503 1446 E 1446 (1459)
Q Consensus 1446 ~ 1446 (1459)
+
T Consensus 237 ~ 237 (251)
T PRK14270 237 P 237 (251)
T ss_pred C
Confidence 4
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=358.39 Aligned_cols=207 Identities=30% Similarity=0.381 Sum_probs=173.8
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+|+||+|.+|+ .|+++|+.+... ...++. .....+.++.+|++........+||||||||++|||||+++|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 699999864311 111111 112234444556666666666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEe--CCeEEEecCh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVEQGNP 1439 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~--~G~IvE~G~p 1439 (1459)
+++||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999998763 37899999999998865 89999999 7999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=364.99 Aligned_cols=221 Identities=24% Similarity=0.355 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CCh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1293 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1293 (1459)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999964 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
..+|++++|+||+|.+|+.|++||+.+.. ...+ +.+.++++.+++.+.+ ....+..+..||+|||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-----KDKLNKSALGLSGGQQQR 158 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67888999999999999999999996421 1121 2234455555543322 223445566899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe-----CCeEEEecCh
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-----HGHLVEQGNP 1439 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~-----~G~IvE~G~p 1439 (1459)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||++++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987777999999999999876 89999997 5999999999
Q ss_pred hHHhccCCc
Q 000503 1440 QTLLQDECS 1448 (1459)
Q Consensus 1440 ~eLl~~~~~ 1448 (1459)
+++.+++..
T Consensus 239 ~~~~~~~~~ 247 (259)
T PRK14260 239 TQIFSNPLD 247 (259)
T ss_pred HHHhcCCCC
Confidence 999876543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=353.67 Aligned_cols=198 Identities=27% Similarity=0.414 Sum_probs=168.7
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred eCCC--cCCCccHHHhcCcCCC-C--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1304 PQSP--FLFEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1304 pQdp--~lf~gTIReNLdp~~~-~--~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
||+| .+|+.|++||+..... . .++++.++++.+ |++.........||||||||++||||++++|++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL---------DLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc---------CCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 9998 4678899999975422 1 122344444444 454444555567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhh-cCEEEEEeCCeEE
Q 000503 1379 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLV 1434 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~-~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~Iv 1434 (1459)
|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999876 357899999999999976 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=371.46 Aligned_cols=226 Identities=19% Similarity=0.319 Sum_probs=182.7
Q ss_pred cEEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC----CCCceEEECCEeCCCCChHH
Q 000503 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1295 (1459)
.++++|++++|+... ..+|+||||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999997532 359999999999999999999999999999999999997 48999999999999988776
Q ss_pred Hhc----ccEEEeCCCc--CCCc-cHHHhc----CcCCCCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCCCCCChh
Q 000503 1296 LRG----RFAVVPQSPF--LFEG-SLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVG 1361 (1459)
Q Consensus 1296 lR~----~i~~VpQdp~--lf~g-TIReNL----dp~~~~~d~ei~~aL~~~~l~~~i~~lGLd---t~v~e~G~~LSgG 1361 (1459)
+|+ ++++|||+|. +.+. |+.+|+ ........++.. ....+.++.+|++ ...+.....||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~-----~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR-----QRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 543 6999999995 4432 565544 322111211111 1122333444554 2356667789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1362 QrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||+||.+|+|+|.|+
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 37899999999999864 89999999999999999
Q ss_pred hhHHhccCCcHHHH
Q 000503 1439 PQTLLQDECSVFSS 1452 (1459)
Q Consensus 1439 p~eLl~~~~~~f~~ 1452 (1459)
++++++++...|.+
T Consensus 238 ~~~~~~~p~hpyt~ 251 (326)
T PRK11022 238 AHDIFRAPRHPYTQ 251 (326)
T ss_pred HHHHhhCCCChHHH
Confidence 99999877655554
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=362.99 Aligned_cols=219 Identities=24% Similarity=0.361 Sum_probs=186.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1459)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 369999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC---C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~L 1368 (1459)
.+|++++++||+|.+|+.|+++|+.+... . .++++.++++.+++.+.+. ...+..+.+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHH
Confidence 78899999999999998999999975321 1 1233444556555544332 23455667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe---------CCeEEEecC
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVEQGN 1438 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~---------~G~IvE~G~ 1438 (1459)
|||++++|+||||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +|++++.|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999987777899999999999876 79999998 899999999
Q ss_pred hhHHhccCC
Q 000503 1439 PQTLLQDEC 1447 (1459)
Q Consensus 1439 p~eLl~~~~ 1447 (1459)
++|+.+++.
T Consensus 243 ~~~~~~~~~ 251 (264)
T PRK14243 243 TEKIFNSPQ 251 (264)
T ss_pred HHHHHhCCC
Confidence 999987654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.93 Aligned_cols=226 Identities=24% Similarity=0.383 Sum_probs=188.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCC--ChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.+. +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCCC----C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN----D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~~----~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
..|++++|+||+|.+|++|++||+.+.... . ++++.++++.+++.+ ++.+..+..+.+||+|||||+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-----EVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-----hhHHHhhcChhhCCHHHHHHH
Confidence 778899999999999999999999753211 1 112333334333322 123345667778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++.+|+++||||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 9999999999999999999999999999999999987777999999999999975 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000503 1446 ECSVFSSFV 1454 (1459)
Q Consensus 1446 ~~~~f~~l~ 1454 (1459)
+...+.+.+
T Consensus 239 ~~~~~~~~~ 247 (253)
T PRK14261 239 PHEELTENY 247 (253)
T ss_pred CCcHHHHHH
Confidence 544444443
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=372.36 Aligned_cols=216 Identities=28% Similarity=0.397 Sum_probs=183.3
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
|+||++.+++ .|+++|+..+. ..++.+..+. +.+.++.+|++.........||||||||++|||||+++|+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 59999996321 1222222221 1223344466555555566899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998764 47899999999999976 899999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=363.32 Aligned_cols=221 Identities=24% Similarity=0.363 Sum_probs=186.4
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCC--CC
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1292 (1459)
.-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 346999999999964 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred hHHHhcccEEEeCCCcCCCccHHHhcCcCC---CCChH-----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~gTIReNLdp~~---~~~d~-----ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
...+|++++|+||+|.+|..|+++|+.+.. ...++ .+.++++..++.+ ++....+..+..|||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-----ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-----hHHHHHhcCcccCCHHHHH
Confidence 567889999999999999999999997421 11221 1223333332211 2334456677789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999888778999999999999876 8999999999999999999998
Q ss_pred ccCC
Q 000503 1444 QDEC 1447 (1459)
Q Consensus 1444 ~~~~ 1447 (1459)
+++.
T Consensus 255 ~~~~ 258 (271)
T PRK14238 255 SNPS 258 (271)
T ss_pred cCCC
Confidence 7654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=371.00 Aligned_cols=215 Identities=27% Similarity=0.386 Sum_probs=187.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||+|.+|++ |++||+.+... ...++..+ ...+.++.+|++...+....+||+|||||++|||||+++|++
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 99999964321 12222111 123445555777777777788999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|+|||||++||+.+.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999988778999999999999887 899999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=354.98 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=174.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|. .|+++|+..... ...++..+ .+.+.++.+|++.........||||||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 599999965311 12222111 123334445676666667778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
++|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998764 37899999999999876 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=374.35 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=184.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
|+||++.++. .|++||+.++.. .+..+..+. ..+.++.+|++........+||+|||||++|||||+.+|+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999875 599999975321 122222111 1233444466655555566899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998864 48999999999999976 999999999999999999999764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=367.22 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCC----CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC-hHHH
Q 000503 1222 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDL 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~l 1296 (1459)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEeCCCc--CCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1297 RGRFAVVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1297 R~~i~~VpQdp~--lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
|++++|+||+|. +|..|+++|+.+... .+..+..+ .+.+.++.+|++.........||||||||++||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 899999999984 676789999965321 12222111 12233344466555666667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHhcc
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..|||+++|++|++++.|+++++.++
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999998764 38999999999999988999999999999999999999764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=363.97 Aligned_cols=223 Identities=23% Similarity=0.343 Sum_probs=190.0
Q ss_pred CCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCC--
Q 000503 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-- 1289 (1459)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~-- 1289 (1459)
-|.++.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 456788999999999964 3699999999999999999999999999999999999975 7999999998874
Q ss_pred --CCChHHHhcccEEEeCCCcCCCccHHHhcCcCCC---C-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCC
Q 000503 1290 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1359 (1459)
Q Consensus 1290 --~i~~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~-----~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LS 1359 (1459)
......+|++++|+||+|.+|.+|+++|+..... . .++++.++++.+++.+ ++....+.....||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS 163 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-----EVKDRLGDLAFNLS 163 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-----hhhHHHhCCcccCC
Confidence 3345678899999999999999999999964311 1 1244555555555432 22344556677899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
+|||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987767899999999999975 89999999999999999
Q ss_pred hhHHhccC
Q 000503 1439 PQTLLQDE 1446 (1459)
Q Consensus 1439 p~eLl~~~ 1446 (1459)
++++..++
T Consensus 244 ~~~~~~~~ 251 (265)
T PRK14252 244 TDTIFIKP 251 (265)
T ss_pred HHHHHhCC
Confidence 99997654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=360.56 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=186.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCCC-hHH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTP-VRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~-~~~ 1295 (1459)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 4699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcccEEEeCCCcCCCccHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLd----t~v~e~G~~LSgGQrQrl~ 1367 (1459)
+|++++|+||+|.+|+.|+++|+.... ..+++++.+. ..+.++.+|++ +.+.....+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV-----AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999997431 1233333221 12233334443 3456667789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
||||++++|+||||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+++
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999887667899999999999876 8999999999999999999998765
Q ss_pred C
Q 000503 1447 C 1447 (1459)
Q Consensus 1447 ~ 1447 (1459)
.
T Consensus 254 ~ 254 (276)
T PRK14271 254 K 254 (276)
T ss_pred C
Confidence 3
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=365.14 Aligned_cols=220 Identities=26% Similarity=0.423 Sum_probs=184.4
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCCC--Ch
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--PV 1293 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~~ 1293 (1459)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35899999999964 369999999999999999999999999999999999997 6899999999998653 45
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCCC---CC---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~~---d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~ 1367 (1459)
..+|++++|+||++.+|++|+++|+..... .. ++++.++++..++.+.+ ....+....+||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-----KDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-----HHHHhCCcccCCHHHHHHHH
Confidence 678899999999999999999999964211 11 22334444444332111 12345667789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEE-EEeCCeEEEecChhHHhcc
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEIL-ILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIl-Vl~~G~IvE~G~p~eLl~~ 1445 (1459)
|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+++|+++.+.. |||++ +|++|+|++.|+++++.++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999988777899999999999876 89975 5799999999999999875
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
+.
T Consensus 271 ~~ 272 (285)
T PRK14254 271 PE 272 (285)
T ss_pred cC
Confidence 43
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=377.91 Aligned_cols=208 Identities=27% Similarity=0.400 Sum_probs=176.8
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH----hcccEEEeCCCcCCCc-
Q 000503 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG- 1312 (1459)
Q Consensus 1238 ~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lf~g- 1312 (1459)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876654 4689999999999975
Q ss_pred cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCC
Q 000503 1313 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389 (1459)
Q Consensus 1313 TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD 1389 (1459)
|++||+.+.. ..+.++..+ ...+.++.+|++........+||||||||++|||||+.+|+||||||||++||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 9999997532 112222111 12334445577666666777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1390 AQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1390 ~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++++.++...|
T Consensus 197 ~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999998764 48999999999999865 89999999999999999999988664433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=354.63 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=173.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++... ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|+ .|++||+.+.. ..+++++.++++..++ +.........||||||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL---------KDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC---------HHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998885 69999996532 1233445555555544 4444445567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998764 47899999999999876 8999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=357.27 Aligned_cols=215 Identities=28% Similarity=0.410 Sum_probs=182.9
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999964 369999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||+|.+|++ |+++|+..... .+..+. ...+.+.++.+|+.........+||+||+||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999964321 111111 11224445555665555556678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
+||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999987643 7999999999999876 8999999999999999999998654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=359.67 Aligned_cols=225 Identities=23% Similarity=0.385 Sum_probs=187.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEe-----CCCCChHH-
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1295 (1459)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---HhcccEEEeCCCc--CCC-ccHHHhcCc----CCCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000503 1296 ---LRGRFAVVPQSPF--LFE-GSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1296 ---lR~~i~~VpQdp~--lf~-gTIReNLdp----~~~~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQ 1364 (1459)
.|+.++|+||+|. ++. .|+++|+.. .......++. ....+.++.+|++ +..+..+.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 3567999999984 343 478888742 1111111221 1234566666886 4678888899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|++||||++++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999985 89999999999999999999
Q ss_pred HhccCCcHHHHH
Q 000503 1442 LLQDECSVFSSF 1453 (1459)
Q Consensus 1442 Ll~~~~~~f~~l 1453 (1459)
+..++...|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (258)
T PRK11701 239 VLDDPQHPYTQL 250 (258)
T ss_pred HhcCCCCHHHHH
Confidence 987665445543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.06 Aligned_cols=205 Identities=31% Similarity=0.391 Sum_probs=171.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh---HHHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1299 (1459)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987654 357889
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
++++||+|.+|++ |+++|+.... ..+.++..+ .+.+.++.+|++........+||||||||++||||++++
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 9999999999985 9999996431 112111111 122334444665555555668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeE
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~I 1433 (1459)
|+|+||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998863 57999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.73 Aligned_cols=216 Identities=25% Similarity=0.403 Sum_probs=185.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCC-----CC--hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM-----ND--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~-----~~--d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||++.++++ |+++|+++... .. +++. .....+.++.+|++.........||||||||++||||+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999998877 99999975311 00 1110 1112233333466555566677899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999998764 47899999999999875 899999999999999999998753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=364.14 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=182.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC--CChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1300 (1459)
|+++||+++|+. ..++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 2469999999999999999999999999999999999999999999999999853 3345678999
Q ss_pred EEEeCCC--cCCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp--~lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||+| .+|+.|++||+.... ..+.++..+ ...+.++.+|++.........||||||||++||||++++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998 578899999996421 112222111 122334444555445555668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998764 47899999999999875 899999999999999999998764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=364.17 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCC--------C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~--------~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LA 1369 (1459)
|+||++.++.+ |+++|+..... . .++++.++++.+ |++........+||||||||++||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc---------CCHHHhcCCcccCCHHHHHHHHHH
Confidence 99999877665 99999974311 0 112333444444 454444555568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||++.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCH
Confidence 99999999999999999999999999999998764 37999999999999865 899999999999999999998753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=340.47 Aligned_cols=172 Identities=35% Similarity=0.591 Sum_probs=162.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
++|+|.+|++|+++|+ ||||||||++||||++++|++||||
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~~lllD 121 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999998 9999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCeE
Q 000503 1383 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHL 1433 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~~G~I 1433 (1459)
|||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 122 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999998764 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=364.45 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=181.3
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCC--CCChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~i 1300 (1459)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 34456778899
Q ss_pred EEEeCCCc--CCCccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSPF--LFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp~--lf~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||+|. ++..|+.+|+.... ..++++..+ .+.+.++.+|++........+||||||||++|||||+.+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999985 57789999986421 112222211 122233334555444555668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++++....
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999998764 47899999999999965 8999999999999999999987643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=374.19 Aligned_cols=209 Identities=25% Similarity=0.387 Sum_probs=175.1
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCE----eCCCCChHHH---h-cccEEEeCCCcC
Q 000503 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL----NIINTPVRDL---R-GRFAVVPQSPFL 1309 (1459)
Q Consensus 1238 ~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~----di~~i~~~~l---R-~~i~~VpQdp~l 1309 (1459)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||. |+...+.+.+ | ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 6777765554 3 589999999999
Q ss_pred CC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000503 1310 FE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385 (1459)
Q Consensus 1310 f~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1385 (1459)
|+ .|++||+.+... .+.++. +....+.++.+||+........+||||||||++|||||+++|+||||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 98 699999975321 122211 112233444456665566666789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1386 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1386 S~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
|+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999987643 7999999999999755 899999999999999999999977644333
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=360.98 Aligned_cols=220 Identities=23% Similarity=0.366 Sum_probs=187.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1459)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 469999999999999999999999999999999999999999999999999988876554 4569
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC-----------CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM-----------ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~-----------~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
+|+||+|.+|++ |+++|+.+... .. +.+..+. .....+.++.+|++...+....+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 999999999986 99999975311 00 0000011 112334555568877778888899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|++||||++++|+||||||||++||..+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999876 89999999999999999999
Q ss_pred Hhcc
Q 000503 1442 LLQD 1445 (1459)
Q Consensus 1442 Ll~~ 1445 (1459)
+..+
T Consensus 241 ~~~~ 244 (255)
T PRK11300 241 IRNN 244 (255)
T ss_pred HhhC
Confidence 8754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=351.12 Aligned_cols=201 Identities=25% Similarity=0.398 Sum_probs=170.9
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|.+|+|.. +++|+|+||++++|++++|+||||||||||||+|+|.++|.+|+|.++|
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 3678999999973 3459999999999999999999999999999999999999999999998
Q ss_pred -cEEEEcCCCCCCCC-CHHHHhccCCC-C----------CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 -SIAYVPQVPWILSG-TIRDNILFGKN-Y----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~-ti~~nI~~g~~-~----------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.+||+||++....+ ||+|-+.+|+. + |++...++++.+++++-. ...-.+||||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGer 144 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGER 144 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHH
Confidence 59999999876554 99999999853 1 233455667777776432 234468999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchh-hcCCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l-~~~d~i~~l~~G~i~~~g~~~ 818 (1459)
|||.|||||+++|+|++||||||+||....-++++.+..-...+|+|+|+|+|+++.. .+||++++|++|+++.+|+++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence 9999999999999999999999999999999999874332235578999999999875 579999999999999999998
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
|+..
T Consensus 225 evlT 228 (258)
T COG1120 225 EVLT 228 (258)
T ss_pred hhcC
Confidence 8754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=359.65 Aligned_cols=216 Identities=26% Similarity=0.370 Sum_probs=183.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EeCCCcC-CCccHHHhcCcCCC-C--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc-----
Q 000503 1303 VPQSPFL-FEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL----- 1373 (1459)
Q Consensus 1303 VpQdp~l-f~gTIReNLdp~~~-~--~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL----- 1373 (1459)
+||++.+ +..|++||+..... . +.++.. ....+.++.+|++.........||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD-----ALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHH-----HHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9999987 56799999965321 1 111100 01223334446655556666789999999999999999
Q ss_pred -cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1374 -KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1374 -r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
++|++|||||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhCh
Confidence 5999999999999999999999999998764 47899999999999875 899999999999999999998763
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=359.72 Aligned_cols=222 Identities=24% Similarity=0.343 Sum_probs=187.7
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1294 (1459)
.+.+++.+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3699999999999999999999999999999999999986 79999999999864 3445
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCC---C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~L 1368 (1459)
.+|++++|+||+|.+|..|++||+.+... . .++++.++++.+++.+.+. ...++...+||+|||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-----DKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHH
Confidence 67889999999999999999999975421 1 1234555565555433221 23345667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe--------CCeEEEecCh
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD--------HGHLVEQGNP 1439 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~--------~G~IvE~G~p 1439 (1459)
|||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999988778899999999999876 89999996 8999999999
Q ss_pred hHHhccCCcHH
Q 000503 1440 QTLLQDECSVF 1450 (1459)
Q Consensus 1440 ~eLl~~~~~~f 1450 (1459)
+++++++...+
T Consensus 241 ~~~~~~~~~~~ 251 (261)
T PRK14263 241 AQIFQNPREQL 251 (261)
T ss_pred HHHHhCCCcHH
Confidence 99987654333
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=360.19 Aligned_cols=224 Identities=26% Similarity=0.410 Sum_probs=184.8
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC-----CceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~--i~~~ 1294 (1459)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 36999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred HHhcccEEEeCCCcCCCc-cHHHhcCcCC---C-CChHHHHH----HHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M-NDDLKIWS----VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~g-TIReNLdp~~---~-~~d~ei~~----aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
.+|++++|+||+|.+|++ |+++|+.... . ..+++..+ .++..++++. +.........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-----VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-----hhhhhcCCcccCCHHHHHH
Confidence 778899999999999985 9999996321 1 12222222 2223332221 1222344556899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+++++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987678999999999999986 89999999999999999999988
Q ss_pred cCCcHHHH
Q 000503 1445 DECSVFSS 1452 (1459)
Q Consensus 1445 ~~~~~f~~ 1452 (1459)
++...+.+
T Consensus 237 ~~~~~~~~ 244 (252)
T PRK14272 237 NPRDERTE 244 (252)
T ss_pred CcCcHHHH
Confidence 76544533
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=361.23 Aligned_cols=219 Identities=24% Similarity=0.414 Sum_probs=182.5
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1294 (1459)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred HHhcccEEEeCCCcCCC-ccHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~-gTIReNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
.+|+.++++||++.+|+ .|+++|+.... ..+. +++.++++.+++.+.+ +........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-----KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 78899999999999997 49999986421 1111 1233334444332111 234556667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe------CCeEEEecC
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD------HGHLVEQGN 1438 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~------~G~IvE~G~ 1438 (1459)
++||||++++|+++||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|+ +|+|++.|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999887667899999999999865 89999996 899999999
Q ss_pred hhHHhccCC
Q 000503 1439 PQTLLQDEC 1447 (1459)
Q Consensus 1439 p~eLl~~~~ 1447 (1459)
+++++.++.
T Consensus 237 ~~~~~~~~~ 245 (258)
T PRK14241 237 TEKIFSNPT 245 (258)
T ss_pred HHHHHhCcC
Confidence 999987543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=358.81 Aligned_cols=219 Identities=25% Similarity=0.379 Sum_probs=184.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCC-CCChHH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-NTPVRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~-~i~~~~ 1295 (1459)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999986 456677
Q ss_pred HhcccEEEeCCCcCCCccHHHhcCcCCC---CC-h----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND-D----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~gTIReNLdp~~~---~~-d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~ 1367 (1459)
+|+.++|+||+|.+|++|+++|+..... .. + +++.++++.+++.+. +....+.....||||||||++
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-----VKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-----hhHHhhcCcccCCHHHHHHHH
Confidence 8899999999999999999999974311 11 1 122333333333221 123445566789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
||||++.+|+||||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 235 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999988777999999999999887 8999999999999999999997654
Q ss_pred C
Q 000503 1447 C 1447 (1459)
Q Consensus 1447 ~ 1447 (1459)
.
T Consensus 236 ~ 236 (249)
T PRK14253 236 K 236 (249)
T ss_pred C
Confidence 3
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=361.80 Aligned_cols=221 Identities=22% Similarity=0.341 Sum_probs=185.8
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
-.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999964 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCC-CCChH--HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFH-MNDDL--KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~-~~~d~--ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+|+||++.+|. .|+++|+.+.. ...+. ...+ .......+.++.+|++.........||||||||++||||++++|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK-EDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCH-HHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 99999998875 59999997531 10000 0000 00111233344446655566677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
++|||||||++||+++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999988643 7899999999998876 89999999999999999999875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=364.97 Aligned_cols=225 Identities=24% Similarity=0.345 Sum_probs=185.6
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCCC--C
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1292 (1459)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346899999999964 359999999999999999999999999999999999864 4999999999998643 3
Q ss_pred hHHHhcccEEEeCCCcCCCccHHHhcCcCCC---C-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000503 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~-~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQ 1364 (1459)
...+|++++|+||+|.+|++|++||+.+... . +. +++.++++..++.+. +..........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-----VSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-----hhhHhhCChhhCCHHHHH
Confidence 3467889999999999999999999974311 1 11 123334444333211 122345556689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 8999999999999999999998
Q ss_pred ccCCcHHH
Q 000503 1444 QDECSVFS 1451 (1459)
Q Consensus 1444 ~~~~~~f~ 1451 (1459)
+++...+.
T Consensus 270 ~~~~~~~~ 277 (286)
T PRK14275 270 TNPKDRMT 277 (286)
T ss_pred hCCCcHHH
Confidence 76554343
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=354.75 Aligned_cols=217 Identities=27% Similarity=0.395 Sum_probs=183.9
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .++++|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999987664 3678999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCC-C-ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM-N-DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~-~-~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+||+|.+|.+ |+++|+.+... . .+.+. ......+.++.+|++........+||+|||||++||||++++|+++
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll 152 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAE----IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999976 99999864211 1 11110 0112233444457776666677789999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1380 CLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 153 llDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCc
Confidence 99999999999999999999987653 7999999999999876 89999999999999999999987553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=352.54 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=174.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999963 469999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|++ |++||+..... ....+. ...+.+.++.+|++........+||||||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999864321 111111 11234455556777767777778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||++++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998764 47899999999999876 8999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=356.93 Aligned_cols=204 Identities=27% Similarity=0.371 Sum_probs=175.7
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999964 46999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+|+||+|.+|+ .|++||+.+... ..++++.++ ++.+|++........+||||||||++|||||+++|++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---------l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA---------LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHH---------HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 599999975321 112333333 3444665556666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1440 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~ 1440 (1459)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999998763 37899999999999865 8999999999999988764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=367.18 Aligned_cols=220 Identities=24% Similarity=0.419 Sum_probs=185.4
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCceEEECCEeCCCC--C
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1292 (1459)
+..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999964 369999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHHhcccEEEeCCCcCCCccHHHhcCcCCCC--------------------ChHHHHHHHHHhcHHHHHHhCCCchhhh
Q 000503 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--------------------DDLKIWSVLEKCHVKEEVEAVGLETFVK 1352 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~~--------------------~d~ei~~aL~~~~l~~~i~~lGLdt~v~ 1352 (1459)
...+|++++|+||++.+|++|+++|+...... .++++.++++.+++.+ +++...+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~ 195 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-----EVNDRLD 195 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-----hhhHHhc
Confidence 56788999999999999999999999742110 0122333444443322 1234556
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEE-EEEeC
Q 000503 1353 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEI-LILDH 1430 (1459)
Q Consensus 1353 e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrI-lVl~~ 1430 (1459)
....+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+| ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 677789999999999999999999999999999999999999999999988777899999999999876 8997 56799
Q ss_pred CeEEEecChhHHhccC
Q 000503 1431 GHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1431 G~IvE~G~p~eLl~~~ 1446 (1459)
|++++.|+++++.+++
T Consensus 276 G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 276 GELVEYDDTDKIFENP 291 (305)
T ss_pred CEEEEeCCHHHHHhCc
Confidence 9999999999998654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=352.57 Aligned_cols=200 Identities=31% Similarity=0.421 Sum_probs=170.1
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1299 (1459)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999532 4699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred cEEEeCCCcCCC-ccHHHhcCcCC---CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1300 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1300 i~~VpQdp~lf~-gTIReNLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
++|+||+|.+|. .|+++|+.... ... +++++++++. +|++........+||||||||++||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQ---------VGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999986 59999986531 111 1233333443 455444444556899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCe
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1432 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~ 1432 (1459)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999998864 48999999999999987 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=359.34 Aligned_cols=221 Identities=25% Similarity=0.369 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC-----CceEEECCEeCCC--CCh
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPV 1293 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~--i~~ 1293 (1459)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQr 1365 (1459)
..+|+.++++||++.+|+.|++||+.+.. ..++ +++.++++.+++.+.+ +...+.....||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-----KHKIHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67889999999999999999999996421 1121 2234444444443222 223456667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeC-----CeEEEec
Q 000503 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH-----GHLVEQG 1437 (1459)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~-----G~IvE~G 1437 (1459)
++||||++++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++.|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 999999999999999999999999999999999998742 48999999999999876 799999999 9999999
Q ss_pred ChhHHhccCCc
Q 000503 1438 NPQTLLQDECS 1448 (1459)
Q Consensus 1438 ~p~eLl~~~~~ 1448 (1459)
+|+++.+++..
T Consensus 239 ~~~~~~~~~~~ 249 (261)
T PRK14258 239 LTKKIFNSPHD 249 (261)
T ss_pred CHHHHHhCCCC
Confidence 99999876554
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=361.71 Aligned_cols=221 Identities=25% Similarity=0.364 Sum_probs=186.3
Q ss_pred CccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCC--CC
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TP 1292 (1459)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~ 1292 (1459)
.-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 336999999999964 3699999999999999999999999999999999999863 59999999999864 34
Q ss_pred hHHHhcccEEEeCCCcCCCccHHHhcCcCCC---C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lf~gTIReNLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
...+|++++|+||++.+|+.|+++|+..... . .++++.++++.+++.+.+ ..........||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-----KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-----HHHhcCCcccCCHHHHHHH
Confidence 4567899999999999998999999965321 1 123344455555543322 2234455678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe---------CCeEEEe
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVEQ 1436 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~---------~G~IvE~ 1436 (1459)
+|||||+++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. |||+++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988778999999999999875 89999997 8999999
Q ss_pred cChhHHhccCC
Q 000503 1437 GNPQTLLQDEC 1447 (1459)
Q Consensus 1437 G~p~eLl~~~~ 1447 (1459)
|+++++..++.
T Consensus 251 g~~~~~~~~~~ 261 (274)
T PRK14265 251 SPTEQMFGSPQ 261 (274)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=358.49 Aligned_cols=229 Identities=23% Similarity=0.347 Sum_probs=184.9
Q ss_pred cEEEEEEEEEecCC-------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH
Q 000503 1222 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1294 (1459)
-|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 24699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcccEEEeCCCc--CCCc-cHHHhcCcC---C-CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPF--LFEG-SLRDNLDPF---H-MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~--lf~g-TIReNLdp~---~-~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl 1366 (1459)
..|++++|+||+|. +++. |+.+|+... + .....+..+ .+.+.++.+|++. .......+||+|||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 66778999999985 4444 888887531 1 111111111 1223334445532 23344568999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999998864 37899999999999987 8999999999999999999998
Q ss_pred ccCC-cHHHHHHH
Q 000503 1444 QDEC-SVFSSFVR 1455 (1459)
Q Consensus 1444 ~~~~-~~f~~l~~ 1455 (1459)
+++. ..+++++.
T Consensus 239 ~~~~~~~~~~~~~ 251 (267)
T PRK15112 239 ASPLHELTKRLIA 251 (267)
T ss_pred cCCCCHHHHHHHH
Confidence 7653 34556665
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=353.64 Aligned_cols=210 Identities=24% Similarity=0.319 Sum_probs=175.7
Q ss_pred cEEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH---H
Q 000503 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1296 (1459)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25999999999999999999999999999999999999999999999999998877653 2
Q ss_pred -hcccEEEeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1297 -RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1297 -R~~i~~VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
+++++|+||+|.+|++ |++||+.+.. .....+. +..+.+.++.+|++.........||||||||++||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 3679999999999885 9999986421 1111111 1122334444466555555566899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEEEe
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~ 1436 (1459)
|+++|++|||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999998764 27899999999999988999999999999874
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=365.07 Aligned_cols=213 Identities=30% Similarity=0.504 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++.+|+. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
|+||+|.+++. |++|||+++... .++++.+.++..+ |+..-+.....||+|||||+.||+||+
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~---------L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFG---------LEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcC---------CchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 99999998876 999999865321 1334555555554 443223334579999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~-~-~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++..|+++++.+.
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999998865 4 799999999999988 999999999999999999998654
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=350.27 Aligned_cols=206 Identities=27% Similarity=0.380 Sum_probs=173.4
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH---Hhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR~~ 1299 (1459)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred cEEEeCCCcCC-CccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1300 FAVVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1300 i~~VpQdp~lf-~gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
++|+||+|.+| ..|+++|+.... ..++++..+. ..+.++.+|++........+||+|||||++||||++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 569999997531 1222222211 12334444665555666678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEE
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLV 1434 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~Iv 1434 (1459)
|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999998763 47899999999999987 7999999999985
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=347.71 Aligned_cols=204 Identities=52% Similarity=0.902 Sum_probs=181.8
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCcEEEEcCCCCCCC
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~~~l~~ 685 (1459)
++++|+++.|..... +..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 357899999864210 0023699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCccccc
Q 000503 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765 (1459)
Q Consensus 686 ~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD 765 (1459)
.|++||+.++..+++++..++.+.+++...+..+|.|++|.+++++.+||||||||++||||++++|++++|||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 766 AQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 766 ~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
++..+.+++.++......++|+|++||+.+.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999888887544322234689999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=348.64 Aligned_cols=200 Identities=26% Similarity=0.406 Sum_probs=170.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||+|.+|++ |++||+.+.... .++++.++++. +|++.........||+|||||++||||+++
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR---------VGLAGLEKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHH---------cCCHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 999999753211 12233334444 355544555566899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999998864 37899999999999976 8999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=350.00 Aligned_cols=209 Identities=25% Similarity=0.383 Sum_probs=182.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh----HHHhc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRG 1298 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~ 1298 (1459)
+.+.|+.++|+++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999755 569999999999999999999999999999999999999999999999998876542 34567
Q ss_pred ccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
.++|+||+|.+|+.|+++|+......++++..++++.+++.+.++.+ |+++.++....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999875545566677888888888777665 7888888888899999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHH--HHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCe
Q 000503 1377 KVLCLDECTANVDAQTASILQN--AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1432 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~--~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~~G~ 1432 (1459)
+||||||||++||..+.+.+.+ .++... .+.|+|++||+.+.+..||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999888776 444432 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=369.97 Aligned_cols=226 Identities=21% Similarity=0.325 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecC--CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC----CCCceEEECCEeCCCCChHH
Q 000503 1222 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1295 (1459)
-++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999953 22459999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEeCCCc--CCC-ccHHHhcCcC-------CC-CCh-HHHHHHHHHhcHHHHHHhCCCch---hhhcCCC
Q 000503 1296 LR----GRFAVVPQSPF--LFE-GSLRDNLDPF-------HM-NDD-LKIWSVLEKCHVKEEVEAVGLET---FVKESGI 1356 (1459)
Q Consensus 1296 lR----~~i~~VpQdp~--lf~-gTIReNLdp~-------~~-~~d-~ei~~aL~~~~l~~~i~~lGLdt---~v~e~G~ 1356 (1459)
++ +++++|||+|. +++ -||.+|+... .. ..+ .+. +....+.++.+||+. .......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~gL~~~~~~~~~~p~ 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRVGIKDHKDAMRSFPY 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHCCCCChHHHHhCCch
Confidence 53 47999999996 333 4888887421 00 011 010 111233444445542 3455667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeE
Q 000503 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1459)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~I 1433 (1459)
.||||||||++|||||+.+|+|||+||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988653 7899999999999976 899999999999
Q ss_pred EEecChhHHhccCCcHHHH
Q 000503 1434 VEQGNPQTLLQDECSVFSS 1452 (1459)
Q Consensus 1434 vE~G~p~eLl~~~~~~f~~ 1452 (1459)
+|.|+++++.+++...|.+
T Consensus 238 ve~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 238 VETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEECCHHHHHhCCCCHHHH
Confidence 9999999999876656654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=358.48 Aligned_cols=215 Identities=23% Similarity=0.348 Sum_probs=183.1
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EeCCCc-CCCccHHHhcCcCCC-C------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPF-LFEGSLRDNLDPFHM-N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~-lf~gTIReNLdp~~~-~------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||+|. .+..|+++|+..+.. . ..++ ....+.+.++.+|++.........||+|||||++||||++.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH-----DAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHH-----HHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999995 456799999965321 0 0000 01122334444455555556667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
+|+++||||||++||.++.+.+.+.|++.. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999998764 37899999999999964 99999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=332.98 Aligned_cols=204 Identities=31% Similarity=0.421 Sum_probs=174.2
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1459)
...|+++++++++.. +.+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 467999999999853 3459999999999999999999999999999999999999999999987
Q ss_pred ------cEEEEcCCCCCCCC-CHHHHhccC----CCCCHHHHHH----HHHHhcchhh-HhhccCCCcccccCCCcccCc
Q 000503 673 ------SIAYVPQVPWILSG-TIRDNILFG----KNYDPQSYSE----TLKACTLDVD-ISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 ------~i~y~~Q~~~l~~~-ti~~nI~~g----~~~~~~~~~~----v~~~~~l~~d-i~~~~~gd~t~ig~~g~~LSG 736 (1459)
++|+++|+--||+. ||+||+.|. ...+++.+++ -+++++|..+ .+.+| ..|||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSG 148 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSG 148 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcc
Confidence 59999999999987 999999995 2345554443 4578888877 56555 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~-~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
|++.|+|||||+..+|+|+++|||||+|||.++..+ ++++... ..-+-|+|+|||+++.+.. ||+|+++.||+|...
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 999999999999999999999999999999977754 4434331 2236799999999998775 899999999999999
Q ss_pred cCHHHHHhcc
Q 000503 815 GSSADLAVSL 824 (1459)
Q Consensus 815 g~~~~l~~~~ 824 (1459)
|+++|+.+..
T Consensus 228 Gt~~el~~sd 237 (263)
T COG1127 228 GTPEELLASD 237 (263)
T ss_pred CCHHHHHhCC
Confidence 9999997643
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=357.67 Aligned_cols=222 Identities=25% Similarity=0.355 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC--C---CCceEEECCEeCCC--CChH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1294 (1459)
-|+++||+++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 469999999999999999999999999999999999975 4 59999999999864 3455
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCC---C-CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~---~-~~----d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
.+|++++|+||+|.+|+.|+++|+.... . .. ++++.++++.+++.+ ++.........+||+|||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-----EVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-----chhhHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999986421 1 11 122333344443321 122344556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+...+
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987667899999999999876 899999999999999999999876
Q ss_pred CCcHH
Q 000503 1446 ECSVF 1450 (1459)
Q Consensus 1446 ~~~~f 1450 (1459)
+...+
T Consensus 238 ~~~~~ 242 (252)
T PRK14255 238 PKEKE 242 (252)
T ss_pred CCChH
Confidence 65433
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=353.54 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=180.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCCcCCCccHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1302 VVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~VpQdp~lf~gTIReNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
|+||+|.+|+.|++||+...... .+.+ ...+.+.++.+|++ +.......+||+|||||++|||||+++|++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPD------PAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChH------HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999642110 1100 01123445555774 456677789999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEe-CCeEEEecChh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILD-HGHLVEQGNPQ 1440 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~-~G~IvE~G~p~ 1440 (1459)
+||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999998864 3789999999999998899999995 66667888875
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=355.00 Aligned_cols=226 Identities=27% Similarity=0.377 Sum_probs=188.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECC------EeCCCCChHH
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG------LNIINTPVRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG------~di~~i~~~~ 1295 (1459)
.++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999964 4699999999999999999999999999999999999999997666665 6777777778
Q ss_pred HhcccEEEeCCCcCCCc-cHHHhcCcCC---CC-ChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHHH
Q 000503 1296 LRGRFAVVPQSPFLFEG-SLRDNLDPFH---MN-DDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~g-TIReNLdp~~---~~-~d~ei~~aL~~~~l~~~i~~lGLd----t~v~e~G~~LSgGQrQrl 1366 (1459)
+|++++|+||+|.+|++ |+++|+.... .. .+++.++. +.+.++.+|++ ...+..+..||+|||||+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 89999999999999986 9999997431 11 22232221 22333334553 234556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||||++++|+++||||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987778999999999999955 899999999999999999999887
Q ss_pred CCcHHHHHH
Q 000503 1446 ECSVFSSFV 1454 (1459)
Q Consensus 1446 ~~~~f~~l~ 1454 (1459)
+...+.+.+
T Consensus 243 ~~~~~~~~~ 251 (257)
T PRK14246 243 PKNELTEKY 251 (257)
T ss_pred CCcHHHHHH
Confidence 654455443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=344.95 Aligned_cols=219 Identities=31% Similarity=0.438 Sum_probs=183.1
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCE---eCCCCChHHHhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL---NIINTPVRDLRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~---di~~i~~~~lR~~ 1299 (1459)
|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+.+|.|+..|++|+|.+||. |.++++.+ .++
T Consensus 3 i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R~ 78 (345)
T COG1118 3 IRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DRK 78 (345)
T ss_pred eeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hcc
Confidence 778899888864 36899999999999999999999999999999999999999999999999 77774433 468
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCCCC-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFHMN-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~~~-----~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
||+|.|+.-||.- ||++|+.++-+. ++.++ +....+.++-..|+-.-..-..+||||||||++|||||.
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~-----r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI-----RARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhH-----HHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 9999999999975 999999876422 22222 112222222223444344556789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
..|++|+||||.++||..-.+.+++-+++.. -+.|+++|||+.+.+.. ||||+||++|+|...|+|+|....+++.|
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~f 233 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccc
Confidence 9999999999999999999999998888764 38999999999998776 89999999999999999999999988766
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=350.52 Aligned_cols=204 Identities=26% Similarity=0.416 Sum_probs=174.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC--CChHHHhccc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1300 (1459)
|+++||+++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
+|+||+|.+|+ .|++||+.... ..+.++..+ ...+.++.+|++........+||||||||++||||++++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 99999999987 59999996532 112222111 123445555777667777778999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeE
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~I 1433 (1459)
|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998764 47899999999999976 899999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=326.19 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=187.4
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|.|+|||.|+.+-| ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678999999976 334899999999999999999999999999999999999999999999999998754 678999999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCCC---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
++-+.-++.- |.||||.+++.. ++.++. +.+.+..+.++++..++.+-.+||.|+|||++|||||.++|+|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 9977777754 999999877532 333332 2333444555666666666667999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHh-hcCEEEEEeCCeEEEecChhHHhccC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~-~~TvI~IaHrl~ti~-~~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
++||||||+||.-+.+.+++.|++... +++||+-||-++.+. -||||+++.+|+++..|+++++.++.
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999988754 999999999999998 59999999999999999999998654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=349.67 Aligned_cols=214 Identities=27% Similarity=0.444 Sum_probs=180.9
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 478999999963 38999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|+ .|++||+..... .+..+..+ .+.+.++.+|+...+.....+||+|||||++||||++++|++
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999986 699999964211 11111111 122333444555555666678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
++|||||++||..+.+.+.+.+++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999988643 8999999999999876 8999999999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=357.97 Aligned_cols=220 Identities=24% Similarity=0.308 Sum_probs=185.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC--------CceEEECCEeCCCCChH
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--------GGQILVDGLNIINTPVR 1294 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~--------~G~I~IDG~di~~i~~~ 1294 (1459)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999888888
Q ss_pred HHhcccEEEeCCCc-CCCccHHHhcCcCCC-C-ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1295 DLRGRFAVVPQSPF-LFEGSLRDNLDPFHM-N-DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~-lf~gTIReNLdp~~~-~-~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
.+|+.++|+||++. +|+.|++||+..... . ........-......+.++.+|+++..+.....||||||||++||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 88889999999986 578899999965321 0 00000000001112344555577777777778999999999999999
Q ss_pred Hc---------cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1372 LL---------KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1372 LL---------r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
|+ .+|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.+ ||++++|++|++++.|++
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 99 59999999999999999999999999987643 7899999999999975 899999999999999999
Q ss_pred hHHhc
Q 000503 1440 QTLLQ 1444 (1459)
Q Consensus 1440 ~eLl~ 1444 (1459)
+++++
T Consensus 240 ~~~~~ 244 (272)
T PRK13547 240 ADVLT 244 (272)
T ss_pred HHHcC
Confidence 99875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=350.12 Aligned_cols=209 Identities=24% Similarity=0.407 Sum_probs=178.4
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++||+++|+.. ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 6899999999632 249999999999999999999999999999999999999999999999887654 3578999
Q ss_pred EeCCCcCCCc-cHHHhcCcCC-CC---C---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFH-MN---D---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~-~~---~---d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||+|.+|++ |++||+.... .. . ++++.++++ .+|++..+......||||||||++||||+++
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR---------QMGIEDLLARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHH---------HcCcHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999997431 11 1 122333344 4455555555566899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~ 1446 (1459)
+|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999988643 7899999999999876 8999999999999999999998654
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=350.57 Aligned_cols=201 Identities=33% Similarity=0.457 Sum_probs=166.4
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 35999999999999999999999999999999999999999999999998874 468899999
Q ss_pred eCCCcC---CCccHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1304 PQSPFL---FEGSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1304 pQdp~l---f~gTIReNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
||+|.+ |+.|++||+...... ..++. ...+.+.++.+|++........+||||||||++|||||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999976 568999998643211 11110 111233344445655555566789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999998764 57899999999999976 8999999986 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=366.73 Aligned_cols=207 Identities=26% Similarity=0.395 Sum_probs=175.0
Q ss_pred EecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCC
Q 000503 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310 (1459)
Q Consensus 1231 ~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf 1310 (1459)
+|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 369999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred Cc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCc
Q 000503 1311 EG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386 (1459)
Q Consensus 1311 ~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS 1386 (1459)
++ |++||+.+... .+..+.. ....+.++.+|++........+||||||||++|||||+++|++|||||||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAE-----ERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 86 99999975321 1111111 112334444566555556667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1387 NVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1387 ~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998864 47899999999999976 999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=342.72 Aligned_cols=200 Identities=30% Similarity=0.458 Sum_probs=169.2
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------c
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------S 673 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------~ 673 (1459)
..|+++|++|.|... + +|+||||++++|++++|+||||||||||+|+|+|.++|.+|+|.+.| +
T Consensus 3 ~~i~v~nl~v~y~~~---~---vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---P---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---e---eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 358999999999742 2 59999999999999999999999999999999999999999999865 4
Q ss_pred EEEEcCCC---CCCCCCHHHHhccCCCC-----------CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 674 IAYVPQVP---WILSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 674 i~y~~Q~~---~l~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
||||||.. |-|..||+|-+..|... |.+..+++++..++. |+. ...-.+|||||+
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~----------~r~i~~LSGGQ~ 145 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLR----------DRQIGELSGGQK 145 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhh----------CCcccccCcHHH
Confidence 99999954 77889999999987432 346777888888876 333 233448999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
|||-|||||.++|++|+|||||+++|+.++..+++- +.....+|+||++|||+++.+. ++|+|+.|+ +++...|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 999999999999999999999999999999988875 4332334899999999999876 599999995 5678899988
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
+...
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=317.91 Aligned_cols=196 Identities=29% Similarity=0.408 Sum_probs=169.8
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------cEE
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 675 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i~ 675 (1459)
.++++.|+|... + -..+++|++||+++|+|||||||||||++|.|+..|.+|+|.++| .++
T Consensus 3 ~L~~V~~~y~~~---~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVS 74 (231)
T COG3840 3 ALDDVRFSYGHL---P-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVS 74 (231)
T ss_pred cccceEEeeCcc---e-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChh
Confidence 456778887532 2 246789999999999999999999999999999999999999987 489
Q ss_pred EEcCCCCCCCC-CHHHHhccCCC-------CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHH
Q 000503 676 YVPQVPWILSG-TIRDNILFGKN-------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 676 y~~Q~~~l~~~-ti~~nI~~g~~-------~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1459)
.++|+..||.- ||++||-+|.. .+.++.+.++...+|....+++|. +|||||||||||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999976 99999999853 245678888889999988888886 899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~-~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+.++.+|++||||||||||.-......- +... ..++.|++||||+++.+.. +|+++++++|+|.++|+.+++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~L-v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLAL-VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHH-HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 9999999999999999999988877654 2221 3457799999999998775 99999999999999999988764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=359.64 Aligned_cols=203 Identities=32% Similarity=0.412 Sum_probs=174.7
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------c
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1459)
.++++|++..|... . +++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~i~l~~v~K~yg~~-----~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGSF-----E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCCc-----e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 47889999998632 1 49999999999999999999999999999999999999999999987 5
Q ss_pred EEEEcCCCCCCCC-CHHHHhccCCCCC-------HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
||+|+|+.-|+.. ||+|||.||.... +++.+++.+..++++-++..| ..||||||||||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAla 145 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALA 145 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHH
Confidence 9999999999865 9999999986542 457778888888887776555 48999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhcc
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSL 824 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 824 (1459)
||+.++|+++|||||+|+||++....+-..+..-....+.|+|.|||+..... .||+|++|++|+|.+.|++.|+....
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999998887766532211233679999999987765 59999999999999999999997543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=355.42 Aligned_cols=212 Identities=37% Similarity=0.660 Sum_probs=191.2
Q ss_pred CCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCcEEEEcCCC
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~~ 681 (1459)
....++++|+++.+ +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|.|+|++|++
T Consensus 36 ~~~~l~i~nls~~~--------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~ 107 (282)
T cd03291 36 DDNNLFFSNLCLVG--------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFS 107 (282)
T ss_pred CCCeEEEEEEEEec--------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcc
Confidence 45678999999852 2359999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCc
Q 000503 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761 (1459)
Q Consensus 682 ~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~ 761 (1459)
++++.|++||+.++..+++.++.+.++++++...+..+|.+.++.+++++.+||||||||++||||++++|+++||||||
T Consensus 108 ~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 108 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred cccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999999999987665666677888888998889999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 762 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 762 s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
++||+.+.+.+.+.++.. +.+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 188 ~gLD~~~~~~l~~~ll~~-~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999988887753322 345789999999999998899999999999999999988754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=354.65 Aligned_cols=221 Identities=26% Similarity=0.422 Sum_probs=181.8
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC----CCceEEECCEeCCCCChHHHh
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR 1297 (1459)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEeCCCc-CCC--ccHHHhcCc----CC-CCChHHHHHHHHHhcHHHHHHhCCCch---hhhcCCCCCChhHHHHH
Q 000503 1298 GRFAVVPQSPF-LFE--GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1298 ~~i~~VpQdp~-lf~--gTIReNLdp----~~-~~~d~ei~~aL~~~~l~~~i~~lGLdt---~v~e~G~~LSgGQrQrl 1366 (1459)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+ |++. .++.....||||||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAV---------GLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHc---------CCCChhhhhhcCCcccCHHHHHHH
Confidence 67999999985 343 477777532 11 11233444444444 4443 45667778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999999875 8999999999999999999998
Q ss_pred ccCCc-HHHHHHHh
Q 000503 1444 QDECS-VFSSFVRA 1456 (1459)
Q Consensus 1444 ~~~~~-~f~~l~~~ 1456 (1459)
+++.. .++.++..
T Consensus 230 ~~~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NAPKHAVTRSLVSA 243 (254)
T ss_pred hCCCCHHHHHHHHh
Confidence 76544 45555543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=328.17 Aligned_cols=204 Identities=25% Similarity=0.342 Sum_probs=173.1
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC-----eEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-----GSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~-----G~i~~~~------ 672 (1459)
..++++|.++.|.. ..+|+|||++|++++++|++|||||||||||+++.+..+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 46888999998863 335999999999999999999999999999999999887765 8998876
Q ss_pred ---------cEEEEcCCCCCCCCCHHHHhccCCCC---C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 ---------~i~y~~Q~~~l~~~ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
+||.|+|.|.-|..||.|||.+|... . ++..++.++.++|.+.... ...+.+..|||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSG 152 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSG 152 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCCh
Confidence 59999999999999999999998432 1 2346667777777665542 34567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
||+||++||||+.-+|+|+|||||||||||.+..+|-+. +.. +.++-|+|+|||+++.... +|+...+-+|+++|.|
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeL-i~e-Lk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL-ITE-LKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHH-HHH-HHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 999999999999999999999999999999988888764 433 5556699999999998765 9999999999999999
Q ss_pred CHHHHHh
Q 000503 816 SSADLAV 822 (1459)
Q Consensus 816 ~~~~l~~ 822 (1459)
+.+++-.
T Consensus 231 ~T~~iF~ 237 (253)
T COG1117 231 PTDKIFT 237 (253)
T ss_pred CHHhhhc
Confidence 9888743
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=329.14 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1459)
-++++|++..|.. -.+|+||||++++||.++++||||+||||++++|+|+.++.+|+|.++|.||...+++.. |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999975 369999999999999999999999999999999999999999999999999999987764 6679
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCCC-ChHHHHHHHHHhcHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~~-~d~ei~~aL~~~~l~~~i~~l-GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+||||...+|+. ||.|||..+... .+++-++. .+++..+-+ -|....+..+.+|||||+|.++|||||+.+||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999986 999999765322 11111110 022222222 45566677788999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
+|+|||||.+|-+.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|+.+||.+++.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999998764 5699999999998775 89999999999999999999998754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.04 Aligned_cols=194 Identities=28% Similarity=0.365 Sum_probs=158.9
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|++-.|...... ..+|+++||+|++||+++|+|||||||||||++|.|...|++|.|.++|
T Consensus 3 ~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 3 ELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred EEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 456666666543221 3569999999999999999999999999999999999999999999987
Q ss_pred ---cEEEEcCCCCCCCC-CHHHHhccC----CCCC---HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFG----KNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~-ti~~nI~~g----~~~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.|||++|+..|... |++|||.+. .... .++.++.++..+|.+... ..+...||||||||
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQR 150 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQR 150 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHH
Confidence 49999999987755 999999853 2221 345555666666654433 23456999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
|||||||+.+|+|++.||||.+||.++++.|++.+......+|+|+|+|||+......|||++.|+||++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999863322134578999999999999999999999999854
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=353.72 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=177.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC--CCCCceEEECCEeCCCCChHHH-hcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDL-RGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~l-R~~ 1299 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 36999999999999999999999999999999999994 7999999999999988877654 456
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCCC----------CChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCC-CCChhHHHHH
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFHM----------NDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGI-SFSVGQRQLI 1366 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~~----------~~d~ei~~aL~~~~l~~~i~~lGLdt~-v~e~G~-~LSgGQrQrl 1366 (1459)
++++||+|.+|++ |+++|+..... .+.++.. ..+.+.++.+|++.. ...... .||||||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 9999999999987 89999853210 0111111 123344455577643 333333 4999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh--cCEEEEEeCCeEEEecChhHHh
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~--~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+|||||+++|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999998864 47899999999999986 7999999999999999998654
Q ss_pred c
Q 000503 1444 Q 1444 (1459)
Q Consensus 1444 ~ 1444 (1459)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 3
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=355.93 Aligned_cols=231 Identities=22% Similarity=0.331 Sum_probs=189.9
Q ss_pred cEEEEEEEEEecCC-------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-
Q 000503 1222 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1293 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~- 1293 (1459)
.|+++||+++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 3569999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcccEEEeCCCc--CC-CccHHHhcCcC-CCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHH
Q 000503 1294 --RDLRGRFAVVPQSPF--LF-EGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1294 --~~lR~~i~~VpQdp~--lf-~gTIReNLdp~-~~~~d~ei~~aL~~~~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl 1366 (1459)
..+|++++|+||++. ++ ..|+++|+... ....+ +...-....+.+.++.+|+++ ..+.....||+|||||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 346889999999983 44 36899997431 10000 001111223456666678874 56777789999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+|||||+++|+||||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999999999999999999987643 7899999999999986 8999999999999999999998
Q ss_pred ccCCcHHHHHHH
Q 000503 1444 QDECSVFSSFVR 1455 (1459)
Q Consensus 1444 ~~~~~~f~~l~~ 1455 (1459)
.. ++.|..-+.
T Consensus 241 ~~-~~~~~~~~~ 251 (268)
T PRK10419 241 TF-SSPAGRVLQ 251 (268)
T ss_pred CC-CCHHHHHHH
Confidence 64 445554443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=349.43 Aligned_cols=212 Identities=27% Similarity=0.372 Sum_probs=173.7
Q ss_pred EEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC---CCCceEEECCEeCCCCChHHHh
Q 000503 1223 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR 1297 (1459)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999755 3679999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cccEEEeCCCcCCCc-cHHHhcCcCCCC-ChHHHHHHHHHhcHHH-HHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1298 GRFAVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKE-EVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~g-TIReNLdp~~~~-~d~ei~~aL~~~~l~~-~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
++++++||++.+|++ |++||+.+.... .........+.....+ .++.++++.........||+|||||++||||+++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999999999987 999999743110 0000011111111222 3444466655566667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccCh-hhHh-hcCEEEEEeCCeEEEec
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRI-STVL-NMDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl-~ti~-~~DrIlVl~~G~IvE~G 1437 (1459)
+|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|++ +.+. .||+|++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 478999999998 4554 58999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=353.09 Aligned_cols=205 Identities=28% Similarity=0.360 Sum_probs=173.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|+ .|+++|+.+.. .....+. .....+.++.+|++........+||||||||++|||||+++|++
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 59999996431 1121111 11233445555776656666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEe--CCeEEEecCh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVEQGNP 1439 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~--~G~IvE~G~p 1439 (1459)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998863 38999999999999876 89999998 5999998764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=366.80 Aligned_cols=212 Identities=24% Similarity=0.369 Sum_probs=181.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----ChHHHhc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1298 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~ 1298 (1459)
|++ |++++|+.. .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ccEEEeCCCcCCCc-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~g-TIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+++|+||++.+|+. |+++|+.+... ..++++. +.++.+|++........+||||||||++|||||+++|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFD---------KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHH---------HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999975 99999975422 1223333 3344446666666667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1448 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~ 1448 (1459)
++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999999999999987653 6899999999998876 899999999999999999999988753
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=352.09 Aligned_cols=226 Identities=22% Similarity=0.365 Sum_probs=187.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEe-----CCCCChHH-
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1295 (1459)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77766543
Q ss_pred ---HhcccEEEeCCCc--C-CCccHHHhcCc----CCCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000503 1296 ---LRGRFAVVPQSPF--L-FEGSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1364 (1459)
Q Consensus 1296 ---lR~~i~~VpQdp~--l-f~gTIReNLdp----~~~~~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~~LSgGQrQ 1364 (1459)
+++.++++||+|. + +..|+.+|+.. .......+. ...+.+.++.+|++ +..+.....|||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 3467999999985 2 33588888732 111111111 12344566667886 5677788899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999986 89999999999999999999
Q ss_pred HhccCCcHHHHHH
Q 000503 1442 LLQDECSVFSSFV 1454 (1459)
Q Consensus 1442 Ll~~~~~~f~~l~ 1454 (1459)
+..++...|.+++
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T TIGR02323 236 VLDDPQHPYTQLL 248 (253)
T ss_pred HhcCCCCHHHHHH
Confidence 9876655555544
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=367.30 Aligned_cols=216 Identities=23% Similarity=0.361 Sum_probs=182.8
Q ss_pred EEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC----hHHHhcccEE
Q 000503 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP----VRDLRGRFAV 1302 (1459)
Q Consensus 1227 nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~----~~~lR~~i~~ 1302 (1459)
|++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 35 999999999999999999999999999999999999999999999986542 3456889999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
+||++.+|++ |++||+.+... ....+. +....+.++.+|++...+.....||||||||++|||||+++|++||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999986 99999975322 111111 1123445555677777777778999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1381 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|.
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999988643 7899999999999876 899999999999999999999987765443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=324.22 Aligned_cols=225 Identities=24% Similarity=0.388 Sum_probs=195.1
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hcc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGR 1299 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~ 1299 (1459)
+.+..+|+..+|.. .+|+++|||++++||.||+.|||||||||.+.++.|+..|++|+|.+||.||+.+|.+.- |-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 45788999999964 469999999999999999999999999999999999999999999999999999998763 446
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
|+|+||||.+|.+ ||+|||...-+..+.+.+.+-++..+.+.++.+.+...-...|..||||||+|+-|||||..+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 9999999999987 999998643333222223344555566677777787777888889999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hHhhcCEEEEEeCCeEEEecChhHHhccCC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~-ti~~~DrIlVl~~G~IvE~G~p~eLl~~~~ 1447 (1459)
++||||.|++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.+|+.
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChh
Confidence 99999999999999999999998764 4778999999976 566699999999999999999999999864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=348.36 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=185.0
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|.... .++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDG----PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCC----ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 35788999885321 2359999999999999999999999999999999999999999999876
Q ss_pred cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccC
Q 000503 673 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1459)
.++|++|++++++.|++||+.++.. ...++..+.++..++.+-++.+|.|.++..+..+.+|||||||||+||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 3899999999999999999988653 344455556666777777888888988888899999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRN-MHD-ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999988876 333 3457899999999999988999999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=353.00 Aligned_cols=229 Identities=25% Similarity=0.404 Sum_probs=185.4
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC---CceEEECCEeCCCC-----Ch
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINT-----PV 1293 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~---~G~I~IDG~di~~i-----~~ 1293 (1459)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999998654 24
Q ss_pred HHHhcccEEEeCCCcCCCc-cHHHhcCcCCCC-ChH-----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN-DDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~g-TIReNLdp~~~~-~d~-----ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl 1366 (1459)
..+|++++|+||++.+|++ |+++|+...... .+. .....-.+....+.++.+|++.........||+|||||+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 5678899999999998875 999999643110 000 000000111233445555776666677778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+||||++.+|++|||||||++||.++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~- 240 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF- 240 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh-
Confidence 99999999999999999999999999999999998874 37899999999998755 899999999999999999997
Q ss_pred ccCCcHHHHHHH
Q 000503 1444 QDECSVFSSFVR 1455 (1459)
Q Consensus 1444 ~~~~~~f~~l~~ 1455 (1459)
.+ ....+++.
T Consensus 241 ~~--~~~~~~~~ 250 (262)
T PRK09984 241 DN--ERFDHLYR 250 (262)
T ss_pred cc--HHHHHHHh
Confidence 32 24555553
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=342.07 Aligned_cols=201 Identities=22% Similarity=0.371 Sum_probs=171.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++||+++|+. .++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EeCCCcCCCc-cHHHhcCcC-CC-C-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1303 VPQSPFLFEG-SLRDNLDPF-HM-N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~-~~-~-----~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+||+|.+|.+ |++||+... .. . .++++.++++ .+|++........+||+|||||++||||+++
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ---------QVGIADYLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHH---------HcCcHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999975 999998632 11 1 1123333344 4455544555566899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecC
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1438 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~ 1438 (1459)
+|+|+||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999988643 7899999999999876 89999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=346.32 Aligned_cols=206 Identities=25% Similarity=0.348 Sum_probs=176.4
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HHh
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1297 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1297 (1459)
++++|++++|+++. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996432 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEeCCCcCCC-ccHHHhcCcCCC----CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1298 GRFAVVPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~-gTIReNLdp~~~----~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
+.++|+||+|.+|. .|+.+|+.+... .+.++..+ ...+.++.+|++........+||+|||||++||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 89999999999987 699999975321 12222211 233455556777777777788999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCeE
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlVl~~G~I 1433 (1459)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++....||+|++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999988653 7999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=340.02 Aligned_cols=202 Identities=29% Similarity=0.391 Sum_probs=168.8
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
|.+++.+..|.. ..+++|||++|+.||++++.|||||||||||++|+|+..|++|.|.++|
T Consensus 3 i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 3 IRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred eeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 456666666653 2348999999999999999999999999999999999999999999987
Q ss_pred -cEEEEcCCCCCCC-CCHHHHhccCCCCC---------HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 -SIAYVPQVPWILS-GTIRDNILFGKNYD---------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~-~ti~~nI~~g~~~~---------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
+||||.|+.-||. .||.|||.||.+.. ..+..+.++.|.|+.--+ .....||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 5999999999885 59999999996322 345667788888865333 3456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
|||||||..+|++|||||||+|||++..+.+-..+..-...-+.|+++|||+.++.. .||+|++|++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999888776633221223679999999998855 5999999999999999999999
Q ss_pred Hhcc
Q 000503 821 AVSL 824 (1459)
Q Consensus 821 ~~~~ 824 (1459)
....
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 6543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=357.91 Aligned_cols=203 Identities=28% Similarity=0.396 Sum_probs=174.3
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|++-+|.. ..+++|+||+|++||++++.|||||||||+|++|+|+.+|++|+|.++|
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 46889999988862 2359999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCC-CCHHHHhccCCCC----C-H---HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 SIAYVPQVPWILS-GTIRDNILFGKNY----D-P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~-~ti~~nI~~g~~~----~-~---~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
.|++|+|+--||. .||+|||.||... . + +++.++++..+|+.--. .+...||||||||||
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVA 146 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVA 146 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHH
Confidence 5999999999996 4999999999652 2 2 36777777777765333 456699999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcch-hhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
|||||..+|+++|||||+||||.+..+++-..+.......|.|.|+|||+.+. +..+|+|.+|++|+|...|+++|+..
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999998887766433323447899999999876 66799999999999999999999965
Q ss_pred c
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 227 ~ 227 (352)
T COG3842 227 R 227 (352)
T ss_pred C
Confidence 4
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=343.94 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=187.6
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|... .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDEK-----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCCC-----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 46889999998531 2359999999999999999999999999999999999999999999875
Q ss_pred -cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHcc
Q 000503 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1459)
.++|++|+++++++|++||+.++.+ ...++..+.++.++++..++.+|.|.++..+....+|||||||||+||||+++
T Consensus 77 ~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999999999999999998754 34556677788889988899999999999999999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.++.||++++|++|++.+.|+.+++..
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEA-LEK-LMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999988776 433 345789999999999998899999999999999998887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=328.54 Aligned_cols=171 Identities=44% Similarity=0.760 Sum_probs=161.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+...+++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
+||+|.+|+.|++||+ ||+|||||++||||++++|++||||
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~llllD 121 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------LSGGQRQRIAIARALLRDPPILILD 121 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 9999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCe
Q 000503 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~ 1432 (1459)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 122 EP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 122 EATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999988767899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=347.50 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=191.0
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1459)
...++++|+++.|+.. . ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENN-L---KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCC-C---CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 4568999999999642 1 2359999999999999999999999999999999999999999999875
Q ss_pred ---cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHc
Q 000503 673 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1459)
.++||+|+|+++++|++||+........+.+.++++..++...++.+|.|.++.+++.+.+||||||||++||||++
T Consensus 93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 48999999999999999999766544556677788888998889999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
++|++++|||||++||+++.+.+++. +.. +.++.|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKV-VMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHH-HHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999998877765 433 345789999999999998999999999999999999988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=341.84 Aligned_cols=204 Identities=31% Similarity=0.407 Sum_probs=174.0
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|. .|+++|+.+.. ..+++++.++++.. |++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV---------DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc---------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 59999986421 22333444444444 554444555568999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhH
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~e 1441 (1459)
|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999998764 47899999999999865 89999999999999999876
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=340.00 Aligned_cols=206 Identities=32% Similarity=0.443 Sum_probs=184.9
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+... +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNL----PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCC----cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 368899999996321 2469999999999999999999999999999999999999999998875
Q ss_pred -cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccC
Q 000503 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1459)
.++|++|+|.++++|++|||.+......++..+.++..++.+.+..+|.|.++..+..+.+||||||||++||||++.+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999987666667777888888999988999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecC
Q 000503 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1459)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKT-IRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999998888776 433 344689999999999998999999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.05 Aligned_cols=224 Identities=27% Similarity=0.456 Sum_probs=180.8
Q ss_pred EEEEEEEEEecCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC-C----CCceEEECCEeCCCCChHH
Q 000503 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-I----CGGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-~----~~G~I~IDG~di~~i~~~~ 1295 (1459)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997543 368999999999999999999999999999999999998 3 5799999999999999875
Q ss_pred H---h-cccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHh-----------cHHHHHHhCCCch---hhhcCCCC
Q 000503 1296 L---R-GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-----------HVKEEVEAVGLET---FVKESGIS 1357 (1459)
Q Consensus 1296 l---R-~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~-----------~l~~~i~~lGLdt---~v~e~G~~ 1357 (1459)
+ | +.|++|||||. .-|+|..... +++.++++.- ...+.++..|++. .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~-------~sLnPv~~Ig-~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPM-------TSLNPVMTIG-DQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCch-------hhcCChhhHH-HHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 4 3 47999999995 1122221111 1222222210 0112223335543 45666778
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEE
Q 000503 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLV 1434 (1459)
Q Consensus 1358 LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~Iv 1434 (1459)
||||||||+.||-||+.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998765 48999999999999876 8999999999999
Q ss_pred EecChhHHhccCCcHHHHHH
Q 000503 1435 EQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1435 E~G~p~eLl~~~~~~f~~l~ 1454 (1459)
|.|+.+++++++...|.+.+
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999987776544
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=342.83 Aligned_cols=211 Identities=31% Similarity=0.484 Sum_probs=186.5
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------c
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1459)
+++|+++.|.... .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 2 EFKNVTFRYPGDG----PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred EEEEEEEEeCCCC----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 5788888885321 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCC
Q 000503 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1459)
Q Consensus 674 i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 752 (1459)
++|++|+|++++.|++||+.++.. +.++.+.+.++.+.+.+.++.+|.|.++..+....+||||||||++||||++.+|
T Consensus 78 i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 78 IGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998743 4556667777888888889999988888899999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAA-LER-LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 99999999999999999988776 433 3457899999999999988999999999999999998887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=327.00 Aligned_cols=170 Identities=32% Similarity=0.562 Sum_probs=157.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999998766 677889999
Q ss_pred EeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1459)
Q Consensus 1303 VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1459)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 78 LPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred EecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999887 9999973 999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeE
Q 000503 1382 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1459)
Q Consensus 1382 DEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~I 1433 (1459)
||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+.. ||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999998864 46899999999999885 899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=333.76 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=163.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcc--CCCCCceEEECCEeCCCCChHHH-hcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDL-RGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl--~~~~~G~I~IDG~di~~i~~~~l-R~~ 1299 (1459)
++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876554 556
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
++|+||+|.+|++ |+++|++ ....+||+|||||++||||++++|+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~---------------------------------~~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR---------------------------------YVNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEEeecChhhccCccHHHHHh---------------------------------hccccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999886 5666550 01136999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh--hcCEEEEEeCCeEEEecChhHHh
Q 000503 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL--NMDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~--~~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
++|||||++||.++.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999998764 3789999999999998 58999999999999999 55564
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.90 Aligned_cols=203 Identities=26% Similarity=0.391 Sum_probs=171.3
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----ChHHHhcc
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRGR 1299 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~~ 1299 (1459)
.+ |++++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 899999753 34 99999999 99999999999999999999999999999999999998643 33457889
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
++|+||++.+|++ |+++|+..... ..+++ .+....+.++.+|++.........||||||||++||||++++|+
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999864 99999975321 11111 11223445556677777777788999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
|+||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999987643 7899999999999865 8999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=327.97 Aligned_cols=172 Identities=33% Similarity=0.510 Sum_probs=159.3
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCC--hHHHhccc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLRGRF 1300 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR~~i 1300 (1459)
|+++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 46999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+|+||+|.+|.+ |+++|+... ||+|||||++||||++++|+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 999999998865 999998653 9999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCe
Q 000503 1380 CLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~ 1432 (1459)
||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999987654 6899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=337.81 Aligned_cols=203 Identities=30% Similarity=0.409 Sum_probs=175.1
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.+.++|.+|.|+.+ .++|+|+||++++|+.++|+|+||||||||++.+.|.++|++|.|.++|
T Consensus 3 ~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 46789999999754 3459999999999999999999999999999999999999999998866
Q ss_pred --cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 --SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 --~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
++|||.|+| .++..||.|.|.||.. .++ ++.+++++.|++.+..+.. ..+||||||||
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqR 146 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQR 146 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceee
Confidence 499999999 6889999999999853 333 4567788888887664433 45999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
||||.+|..+|++++||||||+||+...+.+++.+..-....++|+|++||+++.+.. ||++++|++|+++.+|++.++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999886332212336899999999999876 999999999999999999887
Q ss_pred Hhc
Q 000503 821 AVS 823 (1459)
Q Consensus 821 ~~~ 823 (1459)
.+.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=323.79 Aligned_cols=201 Identities=24% Similarity=0.379 Sum_probs=170.0
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|++-.|+.. ..+|+||||+|++||+++|+|+|||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~~-----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 3 MIEVKNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred eEEEeeeeeecCCC-----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 57899999999743 3459999999999999999999999999999999999999999999876
Q ss_pred ----cEEEEcCCCCCCCC-CHHHHhccCCC------------CCHHHHHHHHH---HhcchhhHhhccCCCcccccCCCc
Q 000503 673 ----SIAYVPQVPWILSG-TIRDNILFGKN------------YDPQSYSETLK---ACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 673 ----~i~y~~Q~~~l~~~-ti~~nI~~g~~------------~~~~~~~~v~~---~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
.|||++|++.|.+. ||.+|++.|+- ++++....+++ ..++.+. .-.+..
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra~ 146 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRAS 146 (258)
T ss_pred HHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHhc
Confidence 59999999998765 99999998742 33444444333 3333322 234567
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQV 811 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i 811 (1459)
+|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+..-....|.|+|+.-|++++.. +||||+-|++|+|
T Consensus 147 ~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226 (258)
T ss_pred cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE
Confidence 999999999999999999999999999999999999999999744333556889999999999976 5999999999999
Q ss_pred EEecCHHHHH
Q 000503 812 KWIGSSADLA 821 (1459)
Q Consensus 812 ~~~g~~~~l~ 821 (1459)
+..|+.+|+.
T Consensus 227 vfDg~~~el~ 236 (258)
T COG3638 227 VFDGPASELT 236 (258)
T ss_pred EEeCChhhhh
Confidence 9999998864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=324.55 Aligned_cols=207 Identities=28% Similarity=0.361 Sum_probs=172.2
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|.++.|.... ...++|+||||++.+||..+|+|+||||||||.++|+|..+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 478899999987542 122579999999999999999999999999999999999999999999987
Q ss_pred --cEEEEcCCCCC-C--CCCHHHHhccCC-----CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 --SIAYVPQVPWI-L--SGTIRDNILFGK-----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 --~i~y~~Q~~~l-~--~~ti~~nI~~g~-----~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.|-+|+|+|.- + .-||++-|.-+- +-.+++..++++..+|..... ......|||||||||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRi 150 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRI 150 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHH
Confidence 38899999972 2 348888875332 122345777888888866432 344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
||||||..+|+++|||||||+||+.+...|++-+..-...++-|.|+|||++..+.+ ||||++|++|++++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999986443323456699999999999987 9999999999999999988886
Q ss_pred hc
Q 000503 822 VS 823 (1459)
Q Consensus 822 ~~ 823 (1459)
..
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 43
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=333.97 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=162.2
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCC---CCCceEEECCEeCCCCChHHH
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDL 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~l 1296 (1459)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000503 1297 RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1297 R~~i~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1459)
|++++|+||++.+|.+ |+++|+.+.... . ..+....||+|||||++||||++++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~----------------~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K----------------GNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c----------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence 8899999999988875 999999643110 0 1223346999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEec-cChhhHh-hcCEEEEEeCCeEEEec
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA-HRISTVL-NMDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~Ia-Hrl~ti~-~~DrIlVl~~G~IvE~G 1437 (1459)
|+||||||||++||+++.+.+.+.|++..+ +.|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999988653 46766655 5566665 58999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=342.06 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=176.8
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999987 35799
Q ss_pred EEeCCCcCCC---ccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1302 VVPQSPFLFE---GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~VpQdp~lf~---gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
|+||+|.++. .|+++|+......+++++.++++.+++.+. .......||||||||++||||++++|++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---------~~~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL---------IDAPMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH---------HhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998765 389999754333345566666666655443 3444567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.++ ..|.+++
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~~ 217 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISMF 217 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHHh
Confidence 999999999999999999999987643 7899999999999865 899999965 79999999998753 3566665
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=341.35 Aligned_cols=211 Identities=30% Similarity=0.482 Sum_probs=184.5
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------c
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1459)
+++|+++.|+.... .++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 ~i~~l~~~~~~~~~---~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 2 EFKNVSFRYPSRPD---VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred eEEEEEEecCCCCC---ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 57888888864211 2459999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCC
Q 000503 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1459)
Q Consensus 674 i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 752 (1459)
++|++|+|++++.|++||+.++.. ...++..+.++.+++...+..+|.|.++..+....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 79 IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999998753 3445556677778888888899999888888999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+++||||||++||+...+.+.+. +.. ..+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~-l~~-~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEA-LDR-AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999988876 433 236789999999999998999999999999999998877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=340.45 Aligned_cols=209 Identities=31% Similarity=0.482 Sum_probs=184.7
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------c
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1459)
+++|+++.|+.. ..+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 2 EFENVTFAYDPG-----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEEEEeCCC-----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 578889988531 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCC
Q 000503 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1459)
Q Consensus 674 i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 752 (1459)
++|++|+|++++.|++||+.++.. ..++...+.++.+++...+..+|.|.++.++.+..+||||||||++||||++.+|
T Consensus 77 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998753 3444556677888888888999999999999999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAA-LRD-VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999888876 333 333789999999999998899999999999999998887754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=346.49 Aligned_cols=209 Identities=26% Similarity=0.380 Sum_probs=172.3
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 48999999999633 469999999999999999999999999999999999999999999999998752 12234699
Q ss_pred EEeCCCcC---CCccHHHhcCcCCC--------C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000503 1302 VVPQSPFL---FEGSLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1459)
Q Consensus 1302 ~VpQdp~l---f~gTIReNLdp~~~--------~---~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~ 1367 (1459)
|+||+|.+ +..++++|+..... . .++++.++++. +|++.........||||||||++
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~gl~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR---------VDMVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHH---------cCChhHhcCCcccCCHHHHHHHH
Confidence 99999865 45689999853210 0 01123333333 35544445555679999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
|||||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999999998764 47899999999998865 8999777 899999999999864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=360.20 Aligned_cols=188 Identities=27% Similarity=0.367 Sum_probs=159.1
Q ss_pred cceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------------cEEEEcCCCCCCCC-
Q 000503 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILSG- 686 (1459)
Q Consensus 625 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~~~l~~~- 686 (1459)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++|+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 359999999999999999999999999999999999999999999876 49999999999975
Q ss_pred CHHHHhccCCCC---CH-HHHH---HHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcC
Q 000503 687 TIRDNILFGKNY---DP-QSYS---ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759 (1459)
Q Consensus 687 ti~~nI~~g~~~---~~-~~~~---~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe 759 (1459)
||+|||.|+.++ +. ++.+ ++++..+|+.. .+....+|||||||||+|||||+.+|+|+||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999987432 22 2333 34444444332 445667999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 760 ~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|||+||+.+.+++.+.+.......++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999988754322234789999999999865 5999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=328.13 Aligned_cols=172 Identities=30% Similarity=0.502 Sum_probs=156.6
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-HHHhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1300 (1459)
.++++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988763 4568899
Q ss_pred EEEeCCC---cCC-CccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSP---FLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp---~lf-~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+|+||+| .++ ..|++||+.+... ||+|||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~al~~~p 123 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARWLARDP 123 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHHHccCC
Confidence 9999995 344 5799999864310 9999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeE
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~I 1433 (1459)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998764 47999999999999987 899999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=336.78 Aligned_cols=450 Identities=16% Similarity=0.179 Sum_probs=314.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh--h---HHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000503 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD--G---EIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALY 411 (1459)
Q Consensus 338 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~--g---~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~ 411 (1459)
...|...++..+.|..|...+.+|-|.-....+-.... + ..=..+..|+..+.+.. .....+..+.+.++.-..
T Consensus 105 ~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 105 AQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999877543321111 1 12247778887776643 334444555555555555
Q ss_pred HHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch
Q 000503 412 LLYTQVKF---------------AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE 476 (1459)
Q Consensus 412 lL~~~lg~---------------a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e 476 (1459)
+||...|. .+.+.++-+++...+..+++|...+...+..+.-..--.....+..+...|-+|+.|
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 66644431 122222222222233334444433333333333222234455788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 000503 477 QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW----ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSF 552 (1459)
Q Consensus 477 ~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l 552 (1459)
+...+++++.-..=++..++..........+. .++. +++.+. ++=.+..++++-|.+.++-..|+.+...+.-+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li-~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILI-AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHh-ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777654444443333222221111111 1111 111111 11124577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC---CchhhhhhcCCCCcccCCCccc-CCCCceEEEEcceEeccCCCcccccccee
Q 000503 553 PWVINGLIDAFISIRRLTRFLGCSE---YKHELEQAANSPSYISNGLSNF-NSKDMAVIMQDATCSWYCNNEEEQNVVLN 628 (1459)
Q Consensus 553 ~~~i~~~~~a~~s~~RI~~fL~~~e---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~sf~w~~~~~~~~~~~l~ 628 (1459)
...++.+.+=+++..|+.+|-..-+ .++.. +... ...... +..+..|.++|++..-+.. .+.++
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~------~~~~-~~~~~~~~~~~~~i~~~nl~l~~p~~-----~~ll~ 410 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEK------PART-GRRIDFDDNADHGITLENLSLRTPDG-----QTLLS 410 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccc------cCcc-cccccccccccceeEEeeeeEECCCC-----Ceeec
Confidence 9999999999999999999985322 11100 0000 000000 0115789999999987643 25699
Q ss_pred eceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEc-C-cEEEEcCCCCCCCCCHHHHhccCC---CCCHHHH
Q 000503 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS-G-SIAYVPQVPWILSGTIRDNILFGK---NYDPQSY 703 (1459)
Q Consensus 629 ~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~-~-~i~y~~Q~~~l~~~ti~~nI~~g~---~~~~~~~ 703 (1459)
+.||++++|+.+.|.|+||||||||+++|.|..|--+|+|... + .+-|+||.|.++.||.||-|++.. +++++.+
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 9999999999999999999999999999999999999999887 3 489999999999999999999975 2788999
Q ss_pred HHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC
Q 000503 704 SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783 (1459)
Q Consensus 704 ~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~ 783 (1459)
.+++..|+|.+-++++.+-++ =...||||||||||+||.++++|++++|||.|||||++++..+++. +.. .+.
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~-~lp 563 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKE-ELP 563 (604)
T ss_pred HHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHh-hCC
Confidence 999999999988877654332 4468999999999999999999999999999999999999999887 444 467
Q ss_pred CceEEEEcCCcchhhcCCEEEEEeC
Q 000503 784 QKTRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 784 ~~t~i~vth~~~~l~~~d~i~~l~~ 808 (1459)
+.|+|-|.|+.......++.+.+.+
T Consensus 564 ~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 564 DATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCEEEEeccchhhHHHHhhheeecc
Confidence 8899999999998887777666643
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=330.84 Aligned_cols=182 Identities=29% Similarity=0.437 Sum_probs=161.4
Q ss_pred cEEEEEEEEEecCC----CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC--CCCCceEEECCEeCCCCChHH
Q 000503 1222 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~ 1295 (1459)
.|+++||+++|+.. ..++|+|+||+|++||+++|+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 256999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcccEEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1296 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1296 lR~~i~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
+|++++++||++.+|.+ |+++|+.... .. . .||+|||||++||||+++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~---------~----------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KL---------R----------GLSGGERKRVSIALELVS 128 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hh---------c----------cCCHHHHHHHHHHHHHHc
Confidence 78899999999998875 9999984210 00 0 699999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hHhh-cCEEEEEeCCeEEEec
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~-ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+|+++||||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+.. ||+|++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999998864 4899999999997 4544 8999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=381.36 Aligned_cols=226 Identities=24% Similarity=0.341 Sum_probs=156.3
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHh------ccC---CCCCce------------
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLT---PICGGQ------------ 1280 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~------rl~---~~~~G~------------ 1280 (1459)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 477888752 2599999999999999999999999999998764 211 122233
Q ss_pred EEECCEeCCCCC----------hHHHhcccE---------EEeCCCcCCC-----------ccHHHhcCcCCC-------
Q 000503 1281 ILVDGLNIINTP----------VRDLRGRFA---------VVPQSPFLFE-----------GSLRDNLDPFHM------- 1323 (1459)
Q Consensus 1281 I~IDG~di~~i~----------~~~lR~~i~---------~VpQdp~lf~-----------gTIReNLdp~~~------- 1323 (1459)
|.||..++..-+ .+.+|.-++ +-++.-.+.+ |+++.|+.+...
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 334443332111 123333332 2222211111 455555443211
Q ss_pred -----C------------ChH-----HHHHHHHHh----cH---HHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1324 -----N------------DDL-----KIWSVLEKC----HV---KEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1324 -----~------------~d~-----ei~~aL~~~----~l---~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
+ +-. .+.++++-. ++ .+.++.+||+. .++.....||||||||+.|||+|+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~ 846 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 846 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh
Confidence 0 101 122222221 11 22334458875 467777899999999999999999
Q ss_pred cCC---CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEE------eCCeEEEecChhHHh
Q 000503 1374 KSS---KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1374 r~~---~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl------~~G~IvE~G~p~eLl 1443 (1459)
++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++.
T Consensus 847 ~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 847 KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999 9999999999999999999999998764 588999999999999999999999 799999999999999
Q ss_pred ccCCcHHHHHH
Q 000503 1444 QDECSVFSSFV 1454 (1459)
Q Consensus 1444 ~~~~~~f~~l~ 1454 (1459)
+++.+.=.+.+
T Consensus 927 ~~~~s~t~~~l 937 (943)
T PRK00349 927 KVEASYTGRYL 937 (943)
T ss_pred hCcccHHHHHH
Confidence 88766444443
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=326.44 Aligned_cols=177 Identities=33% Similarity=0.525 Sum_probs=158.7
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++||+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 4699999999999999999999999999999999999999999999999999988888888899999
Q ss_pred eCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000503 1304 PQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383 (1459)
Q Consensus 1304 pQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1383 (1459)
|| +++.+++. ..+...+.+||+|||||++||||++++|+++||||
T Consensus 79 ~q--------------------------~l~~~gl~---------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 79 PQ--------------------------ALELLGLA---------HLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred HH--------------------------HHHHcCCH---------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99 44444443 33445566899999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1384 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1384 aTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
||++||.++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999987654 7899999999999855 8999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=341.14 Aligned_cols=210 Identities=24% Similarity=0.383 Sum_probs=177.4
Q ss_pred EEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000503 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1459)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1459)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|++++ +|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778774 279999999999999999999999999999999999864 99999999999988888888899999
Q ss_pred eCCCcC-CCccHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc------
Q 000503 1304 PQSPFL-FEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------ 1374 (1459)
Q Consensus 1304 pQdp~l-f~gTIReNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr------ 1374 (1459)
||+|.+ +..|+++|+...... +.++. .....+.++.+|++.........||+|||||++||||+++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 999854 567999999764321 11111 1123345555577666666777899999999999999997
Q ss_pred -CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1375 -SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1375 -~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+|++|||||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998764 47899999999998765 899999999999999999998753
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=357.09 Aligned_cols=202 Identities=28% Similarity=0.422 Sum_probs=169.7
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------c
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1459)
.++++|+++.|+.+ ..+|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGK-----TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCC-----CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 37889999998421 2359999999999999999999999999999999999999999999987 4
Q ss_pred EEEEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
||||+|++.+|. .||+|||.|+.. .+. ++.+++++..+|+.... ....+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMG 146 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999995 599999998743 222 34556666667654433 34458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|||+.+|+++|||||||+||+.+.+.+.+.+ .... ..+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999888763 3212 23789999999998765 5999999999999999999998643
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=330.01 Aligned_cols=181 Identities=24% Similarity=0.382 Sum_probs=160.1
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC--CCCCceEEECCEeCCCCChHHHh
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR 1297 (1459)
.|+++|++++|++. .+++|+|+||+|++||+++|+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cccEEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1298 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1298 ~~i~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
++++++||+|.+|.+ |+++|+.... .++ +||||||||++||||++++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~----------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR----------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh----------------------cCCHHHhHHHHHHHHHhcCC
Confidence 899999999988875 9999986310 000 69999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhcCEEEEEeC-CeEEEec
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDH-GHLVEQG 1437 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~t-i-~~~DrIlVl~~-G~IvE~G 1437 (1459)
++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999998764 47999999999984 4 56899999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=341.71 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=178.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcc--CCCCCceEEECCEeCCCCChHHHhc-
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDLRG- 1298 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl--~~~~~G~I~IDG~di~~i~~~~lR~- 1298 (1459)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999963 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEeCCCcCCCc-cHHHhcCcCCC----C---ChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCC-CCChhHHHHHHH
Q 000503 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI-SFSVGQRQLICL 1368 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~g-TIReNLdp~~~----~---~d~ei~~aL~~~~l~~~i~~lGLd-t~v~e~G~-~LSgGQrQrl~L 1368 (1459)
.++++||+|.+|++ |+++|+..... . .+.+..+.. ....+.++.+|+. ...+.... .||||||||++|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 58999999999987 78999753211 0 010001111 1123334444665 34455444 599999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh--cCEEEEEeCCeEEEecChhHH
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~--~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
|||++++|+|+||||||++||.++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+|+++
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999998764 47999999999999875 799999999999999999844
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=334.10 Aligned_cols=205 Identities=34% Similarity=0.467 Sum_probs=180.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|.++.|... . .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQ-E---IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCC-C---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 36789999998532 1 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHcc
Q 000503 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1459)
.++|++|+|+++..|++||+.++.. .++++..+.++.+++.+.++..|.|.+|.+.....+||||||||++||||+..
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 4899999999998999999988643 34556778888889988889999999999998999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEec
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g 815 (1459)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKER-LRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999988876 333 33347999999999988789999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=334.94 Aligned_cols=197 Identities=27% Similarity=0.371 Sum_probs=163.6
Q ss_pred EEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh----HHHhccc
Q 000503 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGRF 1300 (1459)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~~i 1300 (1459)
++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 369999999999999999999999999999999999999999999999999875542 2467889
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+|++|+|.+|+ .|++||+.+... ...++.. ....+.++.+|++...+....+||+|||||++|||||+++|
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKR-----EKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999997 599999975211 1111111 11233444446655556666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEE
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1428 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl 1428 (1459)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999998764 478999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=319.44 Aligned_cols=164 Identities=33% Similarity=0.449 Sum_probs=150.5
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
+||+|.++++|++||+... ....||+|||||++||||++++|++++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ECCCCccccccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999642 23479999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCe
Q 000503 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G~ 1432 (1459)
|||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999876 689999999999888899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=337.29 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=168.7
Q ss_pred cceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC----CCceEEECCEeCCCCChHHHhcccEEEeCCCc-CC-C-
Q 000503 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LF-E- 1311 (1459)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lf-~- 1311 (1459)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 233468999999995 34 3
Q ss_pred ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000503 1312 GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385 (1459)
Q Consensus 1312 gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLd---t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1385 (1459)
-|+++|+.... ....++. +....+.++.+|++ ...+.....||||||||++||||++++|+||||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt 153 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT 153 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 48888874210 0111110 11123344444665 4566677789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHH
Q 000503 1386 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452 (1459)
Q Consensus 1386 S~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~ 1452 (1459)
++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 154 TDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999987653 7899999999999975 8999999999999999999998766555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=353.98 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=168.1
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|+.... ..++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~--~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTK--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCc--ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 678999999863211 12469999999999999999999999999999999999999999999875
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.|+|++|++.++. .|++|||.++.. .+. ++..++++..+|.+.. ......||||||||
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQR 148 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQR 148 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 4899999999985 699999987532 222 2334455555554322 34556999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1459)
|+|||||..+|+++|||||||+||+.+.+.+++. +.... ..+.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998876 33211 237899999999999865 99999999999999999999
Q ss_pred HHh
Q 000503 820 LAV 822 (1459)
Q Consensus 820 l~~ 822 (1459)
+..
T Consensus 228 v~~ 230 (343)
T TIGR02314 228 IFS 230 (343)
T ss_pred HHc
Confidence 864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=350.30 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=171.0
Q ss_pred CCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 672 (1459)
.+..++++|++|.|+.... ...++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 3457899999999964211 113469999999999999999999999999999999999999999998763
Q ss_pred --------------------cEEEEcCCC--CCCCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCC
Q 000503 673 --------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGD 723 (1459)
Q Consensus 673 --------------------~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd 723 (1459)
.|+||+|+| ++++.||+|||.|+.. .+++ +..+.++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------- 167 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--------- 167 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 279999998 7899999999998742 2222 2233344444321
Q ss_pred cccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCE
Q 000503 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADM 802 (1459)
Q Consensus 724 ~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~ 802 (1459)
...+..+.+||||||||++|||||..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+
T Consensus 168 -~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~-L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 168 -SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL-ILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 224567789999999999999999999999999999999999999988876 3332235789999999999875 5999
Q ss_pred EEEEeCCeEEEecCHHHHHh
Q 000503 803 VVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 803 i~~l~~G~i~~~g~~~~l~~ 822 (1459)
|++|++|++++.|+++++..
T Consensus 246 i~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=322.57 Aligned_cols=221 Identities=25% Similarity=0.428 Sum_probs=189.8
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1459)
++.+|++.+|.. -.+++||||++++||.+|++|||||||||+++++.|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 578999999964 359999999999999999999999999999999999999999999999999999998875 44588
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCCC------------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHMN------------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~~------------~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~L 1368 (1459)
--+|.+-+|++ |+-||+...... ...+-.++.+++ .+.++.+||+..-++...+||+||++||-|
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 88999999987 999998543110 000112222222 344555689888888888999999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-|+++.+++ ||||+||+.|+++.+|+|+|..++
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 9999999999999999999999988899999988764 4899999999999988 899999999999999999999987
Q ss_pred CC
Q 000503 1446 EC 1447 (1459)
Q Consensus 1446 ~~ 1447 (1459)
+.
T Consensus 241 p~ 242 (250)
T COG0411 241 PR 242 (250)
T ss_pred HH
Confidence 64
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=300.96 Aligned_cols=197 Identities=25% Similarity=0.420 Sum_probs=170.3
Q ss_pred EecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCC
Q 000503 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310 (1459)
Q Consensus 1231 ~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf 1310 (1459)
.|.....++|+|+||++++||.++|.||||||||||++.+.-+.+|++|.++..|.|+++.+++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46556668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHhcC-cCC---CCChH-HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000503 1311 EGSLRDNLD-PFH---MNDDL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385 (1459)
Q Consensus 1311 ~gTIReNLd-p~~---~~~d~-ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1385 (1459)
.+||.+||- |+. ...|. ...+-|+++++. ++.+..+..+||||||||++|+|-|---|+||+|||+|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~--------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP--------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc--------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 999999985 332 22232 222333333332 23455666789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhh-HhhcCEEEEEeCCeEEE
Q 000503 1386 ANVDAQTASILQNAISSEC--KGMTVITIAHRIST-VLNMDEILILDHGHLVE 1435 (1459)
Q Consensus 1386 S~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~t-i~~~DrIlVl~~G~IvE 1435 (1459)
|+||..+.+.|.+.|..++ ++..++.|||+-+. ++.+||++-+..|++-|
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999887 47899999999998 88899999999998744
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=339.43 Aligned_cols=215 Identities=18% Similarity=0.289 Sum_probs=171.1
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC--CCCCceEEECCEeCCCCChHHHh-cc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR-GR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR-~~ 1299 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 35999999999999999999999999999999999995 69999999999999887776654 57
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcC-C---CCChHHHHHHHHHhc----HHHHHHhCCCch-hhhcCCC-CCChhHHHHHHH
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPF-H---MNDDLKIWSVLEKCH----VKEEVEAVGLET-FVKESGI-SFSVGQRQLICL 1368 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~-~---~~~d~ei~~aL~~~~----l~~~i~~lGLdt-~v~e~G~-~LSgGQrQrl~L 1368 (1459)
++++||+|.+++. |..+|+... . .....+ .++..+ +.+.++.+|++. ....... .||||||||++|
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE---PLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccc---cchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 9999999987765 544443211 0 000100 111111 223344446632 2222232 699999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHhh--cCEEEEEeCCeEEEecChhHH
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~-~~TvI~IaHrl~ti~~--~DrIlVl~~G~IvE~G~p~eL 1442 (1459)
|||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. +|+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999987643 7899999999999987 799999999999999999855
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=353.67 Aligned_cols=228 Identities=27% Similarity=0.454 Sum_probs=184.4
Q ss_pred cEEEEEEEEEecCCCC--ccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC----CceEEECCEeCCCCChHH
Q 000503 1222 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC----GGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~----~G~I~IDG~di~~i~~~~ 1295 (1459)
-++++|++..|..... .+++||||+|.+||.+||||+|||||||+.++|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975533 4899999999999999999999999999999999999987 899999999999988766
Q ss_pred Hh----cccEEEeCCCc-CCCc--cHHHhcC----cCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhc--CCCCCChhH
Q 000503 1296 LR----GRFAVVPQSPF-LFEG--SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE--SGISFSVGQ 1362 (1459)
Q Consensus 1296 lR----~~i~~VpQdp~-lf~g--TIReNLd----p~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e--~G~~LSgGQ 1362 (1459)
.| ++|++|||||+ .++- ||.+-+. .....+.+| .+....+.++..|+...... -...|||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~e-----a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAE-----ARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHH-----HHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 54 57999999996 3432 4444332 111111111 01111223333366554443 567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
|||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .+.++|+|||++..+.. ||||+||.+|+++|.|++
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999998865 58999999999999987 899999999999999999
Q ss_pred hHHhccCCcHHHHHH
Q 000503 1440 QTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1440 ~eLl~~~~~~f~~l~ 1454 (1459)
+++++++...|.+..
T Consensus 240 ~~i~~~p~hpYT~~L 254 (539)
T COG1123 240 EEILSNPQHPYTRGL 254 (539)
T ss_pred HHHHhccCCcccHHH
Confidence 999998876665543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=337.31 Aligned_cols=194 Identities=27% Similarity=0.364 Sum_probs=163.5
Q ss_pred ceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcCCC-ccHHHhc
Q 000503 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNL 1318 (1459)
Q Consensus 1240 L~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~-gTIReNL 1318 (1459)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CcC-----CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHH
Q 000503 1319 DPF-----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393 (1459)
Q Consensus 1319 dp~-----~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te 1393 (1459)
... ...++++..+ .+.+.++.+|++.........||||||||++|||||+++|++|||||||++||+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 642 1122222111 123344555666656666678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1394 SILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1394 ~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999998764 37899999999999876 8999999999999999887763
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.10 Aligned_cols=199 Identities=39% Similarity=0.692 Sum_probs=175.4
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
.+.|+.|.|+.. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 456888988643 2359999999999999999999999999999999999999999998854
Q ss_pred ---cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHc
Q 000503 673 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1459)
.++|++|+|.+++.|++||+.++.+++.++.+++++++++...++..|.|+++.++....+||||||||++||||++
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 38999999999999999999987766666778899999998888889999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHH-hhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCe
Q 000503 750 HGSDIYMLDDVLSAVDAQVARWILSN-AIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1459)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~-~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~ 810 (1459)
.+|+++||||||++||+.+.+.+.+. ++.....++.|+|++||+.+.++.||++++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887762 22221234689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=351.71 Aligned_cols=201 Identities=28% Similarity=0.417 Sum_probs=168.2
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------c
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1459)
.++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .
T Consensus 6 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 79 (351)
T PRK11432 6 FVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79 (351)
T ss_pred EEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 5889999999952 2359999999999999999999999999999999999999999999976 5
Q ss_pred EEEEcCCCCCCCC-CHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
||||+|++.+|.. ||+|||.|+.. .++ ++.+++++..++... ......+|||||||||+||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALA 148 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence 8999999999865 99999998743 222 233445555555322 2345568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|||+.+|+++|||||||+||+.+.+.+.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|++.+.|+++++...
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999988776 33311 23789999999999875 5999999999999999999998643
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=336.73 Aligned_cols=195 Identities=29% Similarity=0.381 Sum_probs=160.8
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEe-CCCcCCC-ccH
Q 000503 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP-QSPFLFE-GSL 1314 (1459)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp-Qdp~lf~-gTI 1314 (1459)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 6677764 599
Q ss_pred HHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHH
Q 000503 1315 RDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391 (1459)
Q Consensus 1315 ReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~ 1391 (1459)
+||+.... ...+++..+. ..+.++.+|++.........||||||||++|||||+.+|++|||||||++||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 99985432 1222222211 122333446655455555679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1392 TASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1392 te~~I~~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999988643 7899999999999876 8999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=324.85 Aligned_cols=220 Identities=27% Similarity=0.388 Sum_probs=185.7
Q ss_pred cEEEEEEEEEecCCC----------------------CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCc
Q 000503 1222 LIEFQNVTMRYKPSL----------------------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~----------------------~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1279 (1459)
.|+++||+.-+..+. ..-++|+||+|+.||+.-|.|=||||||||+.++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588889988775431 1237899999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHh----cccEEEeCCCcCCCc-cHHHhcCcCCCC---Ch----HHHHHHHHHhcHHHHHHhCCC
Q 000503 1280 QILVDGLNIINTPVRDLR----GRFAVVPQSPFLFEG-SLRDNLDPFHMN---DD----LKIWSVLEKCHVKEEVEAVGL 1347 (1459)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR----~~i~~VpQdp~lf~g-TIReNLdp~~~~---~d----~ei~~aL~~~~l~~~i~~lGL 1347 (1459)
+|++||.|+..++.++|| +++++|+|.--||+- ||-+|..++-+. +. +...++|+.+ ||
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~V---------gL 154 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV---------GL 154 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHc---------Cc
Confidence 999999999999988775 579999999999986 999999876432 22 2233444444 44
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCE
Q 000503 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDE 1424 (1459)
Q Consensus 1348 dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~Dr 1424 (1459)
+..-..-...||||+|||+.|||||..+|+||++|||.|+||+--...+|+-+.+.- -++||++|||+|++... -||
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 444455566899999999999999999999999999999999999999998876542 37999999999998765 799
Q ss_pred EEEEeCCeEEEecChhHHhccCCcHH
Q 000503 1425 ILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1425 IlVl~~G~IvE~G~p~eLl~~~~~~f 1450 (1459)
|..|++|+|+..|+|+|++.+|.--|
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred EEEecCCeEEEeCCHHHHHcCccHHH
Confidence 99999999999999999999886433
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=336.20 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=163.4
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 2 ELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred eEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 57888888852 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCCC-CHHHHhccCCC----CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 --SIAYVPQVPWILSG-TIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~-ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|++.+++. |++||+.++.. .++ ++..++++.+++.... .....+||||||||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 144 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKR 144 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHH
Confidence 38999999998876 99999987532 222 2334455555553322 33456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1459)
|+||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988876 333122 37899999999998775 99999999999999999888
Q ss_pred HHh
Q 000503 820 LAV 822 (1459)
Q Consensus 820 l~~ 822 (1459)
+..
T Consensus 224 ~~~ 226 (235)
T cd03261 224 LRA 226 (235)
T ss_pred HcC
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=307.89 Aligned_cols=507 Identities=16% Similarity=0.147 Sum_probs=334.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000503 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG-YVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1459)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (1459)
+...++|.++|+++....+.++....+. .++-.+-+++.+......+ ..+.+++.+..++.+.. ......-+|
T Consensus 3 ~ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg~t~~g 76 (546)
T COG4615 3 LLLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLGLTTLG 76 (546)
T ss_pred hHHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3457888999998887776665544333 2332222333221111111 11222322222222221 222233344
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000503 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1459)
Q Consensus 348 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~v 427 (1459)
..+-..+...+-+|.+.-|....++.+++.++.-.+.|+..|...+..+.++.-+.+-+..+...|++.-+..++..++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44455555666688888888777777889999999999999997777777766555555555666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000503 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE--QIFSSWLMKTRSSEVKHLSTRKYLDAWC- 504 (1459)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e--~~~~~~i~~~R~~El~~~~~~~~~~~~~- 504 (1459)
+++.+..+++...+..++.....+.-|+-.+..+.++.|-|.+|...-- ..+.+.+... .+|.+. +..+...+.
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~-a~~~r~--~~~~~n~f~~ 233 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD-AQEYRH--HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc-hHHHHh--hhhhhhHHHH
Confidence 7777778888888888888888999999999999999999999987632 1111111110 111111 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch-hh
Q 000503 505 VFFWATTPTLFSLFTFGLFALMGHQL-DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH-EL 582 (1459)
Q Consensus 505 ~~~~~~~~~~~~~~~f~~~~~~~~~L-t~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~-~~ 582 (1459)
....+....+..++....|+...-.. +...+.|....+-.++.|+.++...+|.+..|.++++||.++=..|+..+ ..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 11112222333344443344322212 22244454555667889999999999999999999999998765443322 11
Q ss_pred hhhcCCCCcccCCCcccCCCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc
Q 000503 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~ 662 (1459)
.+ .. ++-..++++|+.|+|... .+-+..||++|++||++.|+|.||||||||++++.|.++
T Consensus 314 ~q--~~------------p~~~~lelrnvrfay~~~-----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~ 374 (546)
T COG4615 314 PQ--AF------------PDWKTLELRNVRFAYQDN-----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374 (546)
T ss_pred CC--cC------------CcccceeeeeeeeccCcc-----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 11 00 123568999999999753 244889999999999999999999999999999999999
Q ss_pred CCCeEEEEcCc-------------EEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCccccc
Q 000503 663 LTHGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1459)
Q Consensus 663 ~~~G~i~~~~~-------------i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig 728 (1459)
|++|+|.++|. ++-|.-|-|||+.+ ..++. -+++..++-++.-.+.... .+.+|.-+
T Consensus 375 PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs--- 445 (546)
T COG4615 375 PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS--- 445 (546)
T ss_pred CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhh-cccCCccc---
Confidence 99999999983 23334444554432 22332 3455555555555444332 22233222
Q ss_pred CCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeC
Q 000503 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~ 808 (1459)
...||-|||.|+|+--|+.-+.||++|||=-+-=||+-.++.++..+-.....|||++.|||+-.+...|||++.|++
T Consensus 446 --~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~ 523 (546)
T COG4615 446 --NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRN 523 (546)
T ss_pred --ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhc
Confidence 247999999999999999999999999999999999998887776443224569999999999999999999999999
Q ss_pred CeEEEe
Q 000503 809 GQVKWI 814 (1459)
Q Consensus 809 G~i~~~ 814 (1459)
|++++.
T Consensus 524 G~~~e~ 529 (546)
T COG4615 524 GQLSEL 529 (546)
T ss_pred Cceeec
Confidence 999863
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=367.45 Aligned_cols=215 Identities=24% Similarity=0.389 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHh-ccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR-GRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR-~~i 1300 (1459)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+....+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+|+||++.+|++ |++||+.+.....+ +.. ..+.+.++.+|++.........||||||||++|||||+++|+||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASM-----QKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHH-----HHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998876 99999976432111 111 11233444556665555566689999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1380 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999998763 47899999999999876 89999999999999999998865
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=369.93 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=183.1
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC--CCceEEECCEeCCCCChHH-Hhc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRG 1298 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~ 1298 (1459)
-|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ccEEEeCCCcCCCc-cHHHhcCcCCC------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1299 ~i~~VpQdp~lf~g-TIReNLdp~~~------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
+++||||+|.+|+. |++||+.+... .+.++..+ .+.+.++.+|++.........||||||||++||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 89999999988875 99999975421 11111111 23345555677655555666899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
|+.+|+||||||||++||+++...+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 999999999999999999999999999998763 47899999999999876 89999999999999999988743
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=350.97 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=169.9
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.. ..+|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 13 ~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 86 (375)
T PRK09452 13 PLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86 (375)
T ss_pred ceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 45889999999853 2359999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCCC-CHHHHhccCCCC---CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHH
Q 000503 673 SIAYVPQVPWILSG-TIRDNILFGKNY---DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~~-ti~~nI~~g~~~---~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRval 744 (1459)
.++||+|++.+|.. ||+|||.|+... ++ ++.+++++..++...++. ...+|||||||||+|
T Consensus 87 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVaL 155 (375)
T PRK09452 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVAI 155 (375)
T ss_pred CEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHH
Confidence 49999999999865 999999987432 22 234556666666544443 345899999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHh
Q 000503 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||||+.+|+++|||||||+||+...+.+.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|+|.+.|+++++..
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999998888776 33212 23789999999999865 599999999999999999999865
Q ss_pred c
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 235 ~ 235 (375)
T PRK09452 235 E 235 (375)
T ss_pred C
Confidence 3
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=311.11 Aligned_cols=159 Identities=33% Similarity=0.518 Sum_probs=148.1
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-HHHhcccE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFA 1301 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~ 1301 (1459)
|+++|++++|+. .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988875 45678899
Q ss_pred EEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000503 1302 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1459)
Q Consensus 1302 ~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1459)
++|| ||+|||||++||||++++|++++|
T Consensus 79 ~~~q----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 79 MVYQ----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEEe----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999 999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEE
Q 000503 1382 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVE 1435 (1459)
Q Consensus 1382 DEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE 1435 (1459)
||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998764 47899999999998876 89999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=368.95 Aligned_cols=216 Identities=19% Similarity=0.305 Sum_probs=182.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH-hccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776553 4679
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC-----C-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM-----N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~-----~-----~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LA 1369 (1459)
+||||++.+|.+ |+++|+..... . +.++.. ..+.+.++.+|++...+....+||||||||++||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 999999998876 99999965321 0 111111 1223445555776555555668999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
|||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999998763 47899999999999976 89999999999999999988754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=350.04 Aligned_cols=202 Identities=29% Similarity=0.393 Sum_probs=169.3
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------c
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1459)
.++++|+++.|.. ..+|+|+||++++|++++|+|||||||||||++|+|..+|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 4789999999853 2359999999999999999999999999999999999999999999986 4
Q ss_pred EEEEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
++||+|++-+|. .||+|||.|+.. .+. ++.+++++..+|+... ..+..+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 999999999996 599999998742 222 3445556655554322 345679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|||+.+|+++|||||||+||+.+.+++.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998877632111223789999999999875 5999999999999999999998654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=325.70 Aligned_cols=194 Identities=26% Similarity=0.350 Sum_probs=164.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 36999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCC----CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~----~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
+||++.+++ .|++||+..... ..++++.++++.. |++.........||||||||++||||++++|+
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~---------gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQV---------GLAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHc---------CCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998886 599999965321 1223444445544 44443444556899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhc-CEEEEE
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILIL 1428 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~-DrIlVl 1428 (1459)
|++|||||++||+++.+.+.+.|++.. +++|+|++||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998763 478999999999999776 788776
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=367.39 Aligned_cols=216 Identities=19% Similarity=0.311 Sum_probs=181.5
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHH-Hhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1300 (1459)
-|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999997665544 46789
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
+|+||+|.+|+. |++||+.+... .+..+.. ..+.+.++.+|++........+||||||||++|||||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999999988875 99999975321 1111111 1123445555776555555568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999998753 47899999999999876 89999999999999999887643
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=341.68 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=169.8
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|+.... ..+++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 678999999964311 112469999999999999999999999999999999999999999998876
Q ss_pred ----cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 ----~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.++||+|+| .+++.||.|||.|+.. .++ +++.++++..+|..++ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 379999998 7888999999998742 222 3455666666664332 2345679999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
||++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999988875 3321234789999999999886 59999999999999999999
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 230 ~~~~ 233 (288)
T PRK13643 230 DVFQ 233 (288)
T ss_pred HHHc
Confidence 8754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.81 Aligned_cols=207 Identities=28% Similarity=0.443 Sum_probs=169.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.... ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4788999999964211 113469999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCC--CCCCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHH
Q 000503 673 ---SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1459)
Q Consensus 673 ---~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 740 (1459)
.||||+|+| .+++.|++|||.|+.. .+++ +..++++.++|.. .+........|||||||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 389999998 5778899999998632 2332 3455666666641 11234566799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 741 RvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
|++|||||+.+|+++||||||++||+.+.+++.+. +..... .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999988876 333122 3789999999999875 59999999999999999998
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=341.71 Aligned_cols=205 Identities=27% Similarity=0.416 Sum_probs=169.7
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|++++|+.... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 689999999964211 113469999999999999999999999999999999999999999998876
Q ss_pred ----cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 ----~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.|+||+|+| .+++.||+|||.|+.. .++ ++.+++++.++|..++. .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 389999998 5888899999988632 222 34566677777654332 345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~ 817 (1459)
|||+|||||+.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999988876 332112 3789999999999976 4999999999999999999
Q ss_pred HHHHh
Q 000503 818 ADLAV 822 (1459)
Q Consensus 818 ~~l~~ 822 (1459)
+++..
T Consensus 231 ~~~~~ 235 (290)
T PRK13634 231 REIFA 235 (290)
T ss_pred HHHhc
Confidence 88753
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=347.30 Aligned_cols=201 Identities=32% Similarity=0.435 Sum_probs=167.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------c
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1459)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 3678999998853 2359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCC-CCHHHHhccCCC-------CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 674 IAYVPQVPWILS-GTIRDNILFGKN-------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 674 i~y~~Q~~~l~~-~ti~~nI~~g~~-------~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
|+||+|++.++. .||+|||.|+.. .+. ++..++++..+|.... .....+||||||||
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QR 144 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQR 144 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 999999999986 499999998743 121 2344455555554322 34556999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1459)
|+|||||+.+|+++|||||||+||+.+.+.+.+. +.... ..+.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999888776 33312 236899999999998765 99999999999999999999
Q ss_pred HHhc
Q 000503 820 LAVS 823 (1459)
Q Consensus 820 l~~~ 823 (1459)
+...
T Consensus 224 i~~~ 227 (353)
T PRK10851 224 VWRE 227 (353)
T ss_pred HHhC
Confidence 8653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=300.69 Aligned_cols=193 Identities=25% Similarity=0.379 Sum_probs=167.4
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
|+|+|++-.|+.. .++|+||||+|++||++.++||||||||||+|+|.++..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g-----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 2 IRFENVSKAYPGG-----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred eeehhhhhhcCCC-----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 6788999888753 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
+||+|+|+--|.. -||.||+.|... .. +++..++++..+|.+....+|. .||||+|||
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQR 145 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQR 145 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHH
Confidence 5999999998664 599999998643 22 2456678888899888888886 899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|+||||+..+|++||-||||-+|||..+..|++- +..-...|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l-feeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL-FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH-HHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999875 33324568899999999999987 5689999999998643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=339.89 Aligned_cols=203 Identities=29% Similarity=0.404 Sum_probs=169.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|++++|+.... .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQE---KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCCCc---CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 4789999999964211 2369999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCC--CCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.++|++|+|. ++..||+|||.|+.. .++ ++..++++..+|+...+ ....+||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv 149 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRV 149 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHH
Confidence 4899999984 566799999998732 232 34566677777654333 33468999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
+||||++.+|+++||||||++||+.+.+.+++. +..... .|+|+|++||+++.+..||+|++|++|+++..|+++++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999998888775 333122 378999999999998789999999999999999998875
Q ss_pred h
Q 000503 822 V 822 (1459)
Q Consensus 822 ~ 822 (1459)
.
T Consensus 229 ~ 229 (279)
T PRK13650 229 S 229 (279)
T ss_pred c
Confidence 4
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=331.22 Aligned_cols=198 Identities=33% Similarity=0.457 Sum_probs=163.9
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------cE
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1459)
++++|+++.|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 3 IEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 678999999853 2359999999999999999999999999999999999999999999875 48
Q ss_pred EEEcCCCCCCC-CCHHHHhccCCCC-------CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 675 AYVPQVPWILS-GTIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 675 ~y~~Q~~~l~~-~ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
+|++|+|.++. .|++||+.++... +. ++..+.++.++++.. ......+||||||||+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl 145 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRV 145 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHH
Confidence 99999999886 5999999876321 21 223344555554322 2345568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
+||||++.+|+++||||||++||+++.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999988775 333122 37899999999998764 999999999999999998887
Q ss_pred H
Q 000503 821 A 821 (1459)
Q Consensus 821 ~ 821 (1459)
.
T Consensus 225 ~ 225 (239)
T cd03296 225 Y 225 (239)
T ss_pred h
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=331.05 Aligned_cols=196 Identities=29% Similarity=0.392 Sum_probs=161.5
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc-----cCCCeEEEEcC---------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-----MLTHGSIHASG--------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~-----~~~~G~i~~~~--------- 672 (1459)
+++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|.+ +|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 2 ELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred EEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 57888988853 23599999999999999999999999999999999999 99999998865
Q ss_pred ------cEEEEcCCCCCCCCCHHHHhccCCCC----C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 ------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 ------~i~y~~Q~~~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.++|++|++.+++.|++||+.++... + +++..++++.+++...+...++ +.+|||||
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~ 146 (227)
T cd03260 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQ 146 (227)
T ss_pred HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHH
Confidence 38999999998878999999875321 1 2334556666666543332211 46899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCH
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~ 817 (1459)
|||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999988876 333 223389999999999876 4999999999999998876
Q ss_pred HH
Q 000503 818 AD 819 (1459)
Q Consensus 818 ~~ 819 (1459)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 54
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=340.04 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=167.8
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.... ...++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999964211 113469999999999999999999999999999999999999999998875
Q ss_pred -----cEEEEcCCC--CCCCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 -----~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.||||+|+| .+++.|++|||.|+.. ++.+ +..+.++.++|+.+ .....+.+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq 150 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQ 150 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 379999998 5788899999998632 2332 23344444444322 1235667999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecC
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~ 816 (1459)
|||++||||++.+|+++||||||++||+.+.+.+.+. +.... ..+.|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999988775 33211 24789999999999875 599999999999999999
Q ss_pred HHHHHh
Q 000503 817 SADLAV 822 (1459)
Q Consensus 817 ~~~l~~ 822 (1459)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988754
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=348.00 Aligned_cols=202 Identities=27% Similarity=0.383 Sum_probs=170.0
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC--eEEEEcC---------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG--------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~--G~i~~~~--------- 672 (1459)
..++++|+++.|.. ..+|+|+||++++|++++|+|||||||||||++|+|+.+|++ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 45889999999853 235999999999999999999999999999999999999999 9999876
Q ss_pred --cEEEEcCCCCCCCC-CHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 --SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.|+||+|++.+|.. ||+|||.|+.. .++ ++.+++++..+|+.... ....+|||||||||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHH
Confidence 49999999999865 99999998642 222 34556666666654333 34569999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC--CceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~--~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 819 (1459)
+|||||..+|+++|||||||+||+...+++.+.+ .....+ +.|+|+|||+.+.+. .||+|++|++|++++.|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999888763 321222 689999999999875 499999999999999999999
Q ss_pred HHhc
Q 000503 820 LAVS 823 (1459)
Q Consensus 820 l~~~ 823 (1459)
+...
T Consensus 226 ~~~~ 229 (362)
T TIGR03258 226 LYDA 229 (362)
T ss_pred HHhC
Confidence 8654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=322.06 Aligned_cols=189 Identities=29% Similarity=0.435 Sum_probs=161.3
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|+... .++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDL----PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCC----cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4588999999986321 2359999999999999999999999999999999999999999999875
Q ss_pred --cEEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHcc
Q 000503 673 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1459)
.|+||+|+|.++++|++||+.+...+++++.. +++. ++.+...||||||||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~---~~l~---------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY---GALR---------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHH---HHhh---------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 49999999999999999999875544433322 2221 345678999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecC
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1459)
+|+++||||||++||+.+.+.+.+. +.. ..+++|+|++||+.+.+..||++++|++|++.+.|+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKT-IRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999888776 333 345789999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=320.78 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=164.3
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36899999999999999999999999999999999999999999999999987643 567889999
Q ss_pred EeCCCcCC-CccHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000503 1303 VPQSPFLF-EGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1303 VpQdp~lf-~gTIReNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1459)
+||++.++ ..|++||+..... ..++++.++++..++.+. ......+||||||||++||||++++|+++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF---------EDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh---------hcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999876 4799999976432 244555566666555432 233445799999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEE
Q 000503 1381 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILIL 1428 (1459)
Q Consensus 1381 LDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl 1428 (1459)
|||||++||+.+.+.+.+.|++.. +++|+|++||+...+.+ ||+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998754 47999999998776655 7999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=349.94 Aligned_cols=200 Identities=28% Similarity=0.408 Sum_probs=168.0
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------c
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1459)
.++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 3788999999852 2359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCC-CHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
|+|++|++.++.. ||+|||.|+.. .+. ++.+++++.++++...+ ....+|||||||||+||
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999998865 99999998642 222 34556666666654332 34468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHh
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
|||+.+|+++|||||||+||+.+.+.+.+. +..... .+.|+|+|||+++.+. .||+|++|++|++.+.|+++++..
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999888775 332122 3789999999999876 499999999999999999998854
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=324.61 Aligned_cols=176 Identities=22% Similarity=0.305 Sum_probs=132.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCc-CCCccHHHhcCcCCC-
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNLDPFHM- 1323 (1459)
Q Consensus 1246 ~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lf~gTIReNLdp~~~- 1323 (1459)
+|..||.+|++||||-||||++++|.|.++|++|+ ..++ +++|=||--. -|+|||++-|.-...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 44567999999999999999999999999999998 2222 6888888432 388999887632111
Q ss_pred -CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHH
Q 000503 1324 -NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402 (1459)
Q Consensus 1324 -~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~ 1402 (1459)
+.+.-.+ .+.++.+.|+..+...-.+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++||+
T Consensus 429 ~~~~s~~~--------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 429 AFGSSYFK--------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred hcccchhH--------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 1111111 1233444666666666668999999999999999999999999999999999999888888887
Q ss_pred hc--CCcEEEEeccChhhHhh-cCEEEEEeC--CeEEEecChhHHh
Q 000503 1403 EC--KGMTVITIAHRISTVLN-MDEILILDH--GHLVEQGNPQTLL 1443 (1459)
Q Consensus 1403 ~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~--G~IvE~G~p~eLl 1443 (1459)
.. .++|.++|-|++-.+.. +||++|.+. |+=-....|..+.
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 53 58899999999988865 799999963 3222233455553
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=326.70 Aligned_cols=191 Identities=30% Similarity=0.405 Sum_probs=157.8
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------cEE
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 675 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i~ 675 (1459)
+++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 2 ELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred eeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 57888888853 2359999999999999999999999999999999999999999998875 489
Q ss_pred EEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHH
Q 000503 676 YVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 676 y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1459)
|++|+|.++. .|++||+.++.. .+. ++..++++.+++...+ .....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHH
Confidence 9999998875 599999987532 222 2345566666665433 23446899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988876 333122 37899999999998765 9999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=337.55 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=167.4
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.. .++|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCCC-----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 47899999998521 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCC--CCCCCCHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.++|++|+| .+++.|++||+.|+.. .+ ++++.++++.++|...... ....||||||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv 147 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRV 147 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHH
Confidence 489999998 5778899999998632 22 2345666777777543332 3358999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
+||||+..+|+++||||||++||+.+.+++++. +.....+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999988776 3332234789999999999985 5999999999999999998664
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=326.92 Aligned_cols=205 Identities=27% Similarity=0.447 Sum_probs=173.3
Q ss_pred CCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 672 (1459)
....++++|+++.|+.... .++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPD---TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 3456899999999964211 2359999999999999999999999999999999999999999999876
Q ss_pred ----cEEEEcCCCCCCCCCHHHHhccCCC-CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHH
Q 000503 673 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 673 ----~i~y~~Q~~~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1459)
.++|++|+|.+++.|++||+.++.. .....+.+..+...++.-++.++.|.++..+.+..+|||||||||+||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 3899999999999999999987643 22222333334445666778888788888899999999999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeE
Q 000503 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1459)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i 811 (1459)
++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQA-LYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988776 333 3446899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=331.76 Aligned_cols=203 Identities=22% Similarity=0.293 Sum_probs=170.0
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc---CCCeEEEEcC---------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM---LTHGSIHASG--------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~---~~~G~i~~~~--------- 672 (1459)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 4678999999852 235999999999999999999999999999999999974 6999999876
Q ss_pred ----cEEEEcCCCCCCCCCHHHHhccCCCC---------CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 ----SIAYVPQVPWILSGTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 ----~i~y~~Q~~~l~~~ti~~nI~~g~~~---------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.++|++|+|.+++.|++||+.++... ++++..++++.+++...+.. ...+++.+||||||
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 148 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQ 148 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHH
Confidence 48999999999999999999875321 12245567777777554432 23456779999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
|||+||||++++|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL-LKE-LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999998888776 433 335789999999999886 49999999999999999988
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 227 ~~~~ 230 (246)
T PRK14269 227 EFFE 230 (246)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=339.86 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=168.4
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.... ...++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3688999999964321 112469999999999999999999999999999999999999999998742
Q ss_pred -------------------------cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhh
Q 000503 673 -------------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISL 718 (1459)
Q Consensus 673 -------------------------~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~ 718 (1459)
.||||+|+| .++..||+|||.|+.. .++ ++..++++.++|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-- 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY-- 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh--
Confidence 379999987 5778899999998742 232 2345566666664222
Q ss_pred ccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh
Q 000503 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798 (1459)
Q Consensus 719 ~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~ 798 (1459)
.+....+||||||||++|||||+.+|+++||||||++||+...+.+.+. +......|+|+|++||+++.+.
T Consensus 159 --------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 159 --------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred --------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHH
Confidence 2345679999999999999999999999999999999999998888775 3321234789999999999875
Q ss_pred -cCCEEEEEeCCeEEEecCHHHHHh
Q 000503 799 -AADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 799 -~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
.||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 599999999999999999988754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=363.81 Aligned_cols=211 Identities=24% Similarity=0.384 Sum_probs=177.8
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-HHHhccc
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1300 (1459)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976543 4567899
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
+|+||+|.+|++ |+++|+..... ....+.. ..+.+.++.+|++.........||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 999999998876 99999975321 1111111 12334555557765555556689999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecCh
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1439 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p 1439 (1459)
++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998764 47899999999999876 899999999999977654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=369.95 Aligned_cols=221 Identities=24% Similarity=0.352 Sum_probs=180.3
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCC----------
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII---------- 1289 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~---------- 1289 (1459)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---HHh-cccEEEeCCC--cCCCc-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCC
Q 000503 1290 NTPVR---DLR-GRFAVVPQSP--FLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESG 1355 (1459)
Q Consensus 1290 ~i~~~---~lR-~~i~~VpQdp--~lf~g-TIReNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lGLd---t~v~e~G 1355 (1459)
+.+.. .+| ++|++|+|+| .+++. ||++|+.... ..+..+.. ..+.+.++.+|++ .......
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChhhHHhCCC
Confidence 22322 344 5799999999 57764 9999986421 11221111 1123344445663 3456667
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-C-CcEEEEeccChhhHhh-cCEEEEEeCCe
Q 000503 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1459)
Q Consensus 1356 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~-~~TvI~IaHrl~ti~~-~DrIlVl~~G~ 1432 (1459)
.+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 7899999999999999999999999999999999999999999998864 3 7899999999999876 89999999999
Q ss_pred EEEecChhHHhccCC
Q 000503 1433 LVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1433 IvE~G~p~eLl~~~~ 1447 (1459)
|++.|++++++..+.
T Consensus 247 i~~~g~~~~~~~~~~ 261 (623)
T PRK10261 247 AVETGSVEQIFHAPQ 261 (623)
T ss_pred ecccCCHHHhhcCCC
Confidence 999999999986554
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=331.28 Aligned_cols=197 Identities=25% Similarity=0.365 Sum_probs=162.4
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 2 EVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 56788888852 2359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCCC-CHHHHhccCCCC-------------CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCccc
Q 000503 673 SIAYVPQVPWILSG-TIRDNILFGKNY-------------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~~-ti~~nI~~g~~~-------------~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 734 (1459)
.++|++|+|.++.+ |++|||.++... +. ++..+.++..+++ ...+....+|
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGEL 144 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhC
Confidence 38999999998876 999999875321 11 1233334443332 2335567799
Q ss_pred CcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEE
Q 000503 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 813 (1459)
Q Consensus 735 SGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~ 813 (1459)
|||||||++||||++.+|++++|||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999988876 33212257899999999999865 99999999999999
Q ss_pred ecCHHHHH
Q 000503 814 IGSSADLA 821 (1459)
Q Consensus 814 ~g~~~~l~ 821 (1459)
.|+++++.
T Consensus 224 ~~~~~~~~ 231 (236)
T cd03219 224 EGTPDEVR 231 (236)
T ss_pred ecCHHHhc
Confidence 99988874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=363.86 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=179.5
Q ss_pred EEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh-HHHhcccEEE
Q 000503 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVV 1303 (1459)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~~V 1303 (1459)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 369999999999999999999999999999999999999999999999999976654 4467889999
Q ss_pred eCCCcCCCc-cHHHhcCcCCC------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1304 PQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1304 pQdp~lf~g-TIReNLdp~~~------~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
||++.+|.. |+++|+.+... .+.++.++ ...+.++.+|++........+||||||||++|||||+++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999987764 99999975321 12222211 2334555567776666667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999998763 47899999999999876 8999999999999999988874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.17 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=168.4
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG---K---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 3688999998752 2 359999999999999999999999999999999999999999998876
Q ss_pred -cEEEEcCCCCCCCCCHHHHhccCCCC---CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHH
Q 000503 673 -SIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~ti~~nI~~g~~~---~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARal 748 (1459)
.++|++|+|.+++.|++||+.++..+ +.++..+.++.++++.+. ......+||||||||++||||+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHH
Confidence 38999999999989999999876432 234455666666664322 1245668999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 749 y~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999998887775 333122 37899999999999875 99999999999999999888753
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=320.23 Aligned_cols=193 Identities=20% Similarity=0.249 Sum_probs=162.5
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999875 34577899999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+||++.+++ .|+++|+...... .+.+ +.+.++.+|++...+....+||+|||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVG---------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHH---------HHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999998875 6999998643211 1122 334444445544444444579999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEE
Q 000503 1380 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILI 1427 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlV 1427 (1459)
||||||++||..+.+.+.+.|++.. +++|+|++||+.+.+.+||.-++
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999998753 57899999999999999986543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=326.43 Aligned_cols=197 Identities=21% Similarity=0.276 Sum_probs=162.5
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------c
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1459)
++++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 357888888852 2359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCC-CHHHHhccCC---CCC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
++|++|++.++.. |++||+.++. ..+ +++.++.++.++++.... ....+||||||||++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la 143 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIA 143 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHH
Confidence 8999999988765 9999998642 122 234556666666654322 33458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~-~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
||++.+|+++||||||++||+.+.+.+.+. +.....+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999888775 3321223 7899999999999875 999999999999998887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=345.71 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=169.0
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1459)
...++++|+++.|.. ..+|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 346899999999852 2359999999999999999999999999999999999999999999986
Q ss_pred -cEEEEcCCCCCCCC-CHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 -SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
.||||+|++-+|.. ||+|||.|+.. .++ ++..++++..++.... .....+|||||||||+
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVA 159 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 48999999999965 99999998742 222 2344555655554332 3345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
|||||+.+|+++|||||||+||+...+.+.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999888776532111224789999999999865 599999999999999999999865
Q ss_pred c
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 3
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=331.84 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=168.4
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------ 672 (1459)
..++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|..+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD---F---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC---e---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 35889999999852 2 35999999999999999999999999999999999864 5899998765
Q ss_pred ---------cEEEEcCCCCCCCCCHHHHhccCCC---C-C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccC
Q 000503 673 ---------SIAYVPQVPWILSGTIRDNILFGKN---Y-D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1459)
Q Consensus 673 ---------~i~y~~Q~~~l~~~ti~~nI~~g~~---~-~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 735 (1459)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++...+. +..+....+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 151 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLS 151 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999998999999987521 1 1 234445566666543322 23456678999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL-IHE-LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999888776 433 3446899999999999864 999999999999999
Q ss_pred cCHHHHHh
Q 000503 815 GSSADLAV 822 (1459)
Q Consensus 815 g~~~~l~~ 822 (1459)
|+++++..
T Consensus 230 g~~~~~~~ 237 (253)
T PRK14242 230 GPTEQIFT 237 (253)
T ss_pred CCHHHHHc
Confidence 99888753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=364.86 Aligned_cols=214 Identities=25% Similarity=0.338 Sum_probs=147.9
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHh------ccCC----C-----------CCce
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLTP----I-----------CGGQ 1280 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~------rl~~----~-----------~~G~ 1280 (1459)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488888862 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCEeCCCCCh----------HHHhcccEEEeCC------CcCCCc--------------cHHHhcCcC---------
Q 000503 1281 ILVDGLNIINTPV----------RDLRGRFAVVPQS------PFLFEG--------------SLRDNLDPF--------- 1321 (1459)
Q Consensus 1281 I~IDG~di~~i~~----------~~lR~~i~~VpQd------p~lf~g--------------TIReNLdp~--------- 1321 (1459)
|.||-.+|..-++ +.+|.-++=.|+- +-.|+- .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 5666666643332 2445555544431 222221 111111000
Q ss_pred ---CCCChH-----------------HHHHHHHHh-------cHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1322 ---HMNDDL-----------------KIWSVLEKC-------HVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1322 ---~~~~d~-----------------ei~~aL~~~-------~l~~~i~~lGLdt-~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
..+.++ .+.++++-. ...+.++.+||+. .++.....|||||+||++|||+|.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 011111 011111110 1112333448875 477888899999999999999999
Q ss_pred c---CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEE------eCCeEEEecChhHH
Q 000503 1374 K---SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTL 1442 (1459)
Q Consensus 1374 r---~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl------~~G~IvE~G~p~eL 1442 (1459)
+ +|+++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998764 588999999999999999999999 79999999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=392.91 Aligned_cols=219 Identities=24% Similarity=0.332 Sum_probs=190.5
Q ss_pred ccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
..|+++|++++|+++..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. +....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999975 566789999
Q ss_pred EEEeCCCcCCCc-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~g-TIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
+++||++.+|+. |++|||.++.. .+.++..+ ...+.++.+||+...+....+||||||||++|||||+.+|
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999975 99999975421 12222211 2234455557777677777889999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999988779999999999999976 899999999999999999999764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=379.47 Aligned_cols=211 Identities=24% Similarity=0.288 Sum_probs=154.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHH---------HHhccCCCCC----c----eEEEC
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN---------ALFRLTPICG----G----QILVD 1284 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~---------~L~rl~~~~~----G----~I~ID 1284 (1459)
.++++|++. ..|+|+|++|++||.+||.|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 478888762 2699999999999999999999999999999 4445332211 1 24666
Q ss_pred CEeCCCCCh----H------HHhc---------c-----cEEEeCC------------------C---------------
Q 000503 1285 GLNIINTPV----R------DLRG---------R-----FAVVPQS------------------P--------------- 1307 (1459)
Q Consensus 1285 G~di~~i~~----~------~lR~---------~-----i~~VpQd------------------p--------------- 1307 (1459)
..++..-+. . ++|+ + ..+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 655543222 1 4441 1 1112221 1
Q ss_pred -----cCCCc-cHHHhcCcCCC-----C-ChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHHHc-
Q 000503 1308 -----FLFEG-SLRDNLDPFHM-----N-DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARALL- 1373 (1459)
Q Consensus 1308 -----~lf~g-TIReNLdp~~~-----~-~d~ei~~aL~~~~l~~~i~~lGLdt~-v~e~G~~LSgGQrQrl~LARALL- 1373 (1459)
+.+.+ ||.|||++... . +.+++.+.+ +.++.+||+.. .+....+||||||||++|||||+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 13333 77777765421 0 112222222 23444588775 68888899999999999999998
Q ss_pred --cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEe------CCeEEEecChhHHhc
Q 000503 1374 --KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILD------HGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1374 --r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~------~G~IvE~G~p~eLl~ 1444 (1459)
++|+++||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|+++..
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 5999999999999999999999999998764 5889999999999998899999996 799999999999986
Q ss_pred c
Q 000503 1445 D 1445 (1459)
Q Consensus 1445 ~ 1445 (1459)
.
T Consensus 907 ~ 907 (1809)
T PRK00635 907 L 907 (1809)
T ss_pred c
Confidence 3
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=318.34 Aligned_cols=196 Identities=27% Similarity=0.434 Sum_probs=168.2
Q ss_pred cEEEEEEEEEecCCC-------CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH
Q 000503 1222 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~-------~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1294 (1459)
-++++|++..|+... -.+++||||+|++||.+||||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 26899999999999999999999999999999999999999999999999987766
Q ss_pred HHhcccEEEeCCCcCCCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000503 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1295 ~lR~~i~~VpQdp~lf~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1459)
....++++.+.|+++|+.+. ........||||||||++|||||.-
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~--------~~~ryPhelSGGQrQRi~IARALal 126 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEE--------FLYRYPHELSGGQRQRIGIARALAL 126 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHH--------HhhcCCcccCchhhhhHHHHHHHhh
Confidence 11123456666666664332 2344556799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~ 1451 (1459)
+|++++.|||||+||.-.++.|.+.+.+.- .+-|.++|||+++.++. ||||.||..|+|+|.|+-+++.+++...|-
T Consensus 127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYT 206 (268)
T COG4608 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYT 206 (268)
T ss_pred CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHH
Confidence 999999999999999999999999987653 38899999999999998 799999999999999999999999887776
Q ss_pred HHH
Q 000503 1452 SFV 1454 (1459)
Q Consensus 1452 ~l~ 1454 (1459)
+..
T Consensus 207 k~L 209 (268)
T COG4608 207 KAL 209 (268)
T ss_pred HHH
Confidence 654
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=300.02 Aligned_cols=213 Identities=24% Similarity=0.357 Sum_probs=182.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+.+|++++-. .+.+|+++||+++|||.+||+||||||||||+++|.|...|++|++.++|.++++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889987764 3469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcC-CCccHHHhcCcCC----C---CChHH--HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000503 1303 VPQSPFL-FEGSLRDNLDPFH----M---NDDLK--IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1459)
Q Consensus 1303 VpQdp~l-f~gTIReNLdp~~----~---~~d~e--i~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1459)
.||+..+ |+-|++|-+.++. . ..+++ ..+++.++++..+- +..-..|||||+||+.|||.|
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la---------~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA---------GRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh---------ccchhhcCchHHHHHHHHHHH
Confidence 9999976 8999999986542 1 11233 45677777654322 222336999999999999999
Q ss_pred cc------CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1373 LK------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1373 Lr------~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
.+ ++++|+||||||+||..-...+.++.|+.. +++.|+.|-|+|+.... ||||++|.+|||+..|+|++.+.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 85 357999999999999999999999998874 58999999999997654 79999999999999999999987
Q ss_pred cC
Q 000503 1445 DE 1446 (1459)
Q Consensus 1445 ~~ 1446 (1459)
.+
T Consensus 231 ~E 232 (259)
T COG4559 231 DE 232 (259)
T ss_pred HH
Confidence 53
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=322.36 Aligned_cols=188 Identities=27% Similarity=0.415 Sum_probs=157.1
Q ss_pred EEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------cEEEE
Q 000503 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYV 677 (1459)
Q Consensus 608 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------~i~y~ 677 (1459)
++|+++.|+.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG-----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc-----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 46777877531 2359999999999999999999999999999999999999999999876 48999
Q ss_pred cCCC--CCCCCCHHHHhccCCC---CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCC
Q 000503 678 PQVP--WILSGTIRDNILFGKN---YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1459)
Q Consensus 678 ~Q~~--~l~~~ti~~nI~~g~~---~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 752 (1459)
+|+| .+++.|++||+.++.. .++++..++++.+++...... ...+||||||||++||||+..+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 4677899999987642 223466777888877644332 33589999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEE
Q 000503 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1459)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~ 812 (1459)
++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGEL-IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999998888775 43312457899999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=325.62 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=161.0
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------cEEEEc
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVP 678 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y~~ 678 (1459)
+++|+++.|+... ..+++|+|+||+|++|++++|+||||||||||+++|+|..+|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 5788888885311 112469999999999999999999999999999999999999999999876 589999
Q ss_pred CCCCCCC-CCHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHcc
Q 000503 679 QVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 679 Q~~~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1459)
|+|.++. .|++||+.++.. .+ +++..+.++.++++..+. ....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence 9999887 699999987532 22 234455666666654333 3345899999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhh-cCCEEEEEe--CCeEEEecCH
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMD--KGQVKWIGSS 817 (1459)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~-~~d~i~~l~--~G~i~~~g~~ 817 (1459)
+|+++||||||++||+.+.+.+++. +.... ..++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999988876 33211 23789999999999876 499999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.56 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=157.0
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|+.. . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGG-H---QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCC-C---eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 5788999998532 1 2359999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|+|.++. .|++||+.++.. .+ +++..++++.+++..... ....+||||||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 146 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQR 146 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999999886 599999987521 22 234556667666654333 2345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeE
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i 811 (1459)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988876 33312347899999999999875 999999999974
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.60 Aligned_cols=198 Identities=25% Similarity=0.382 Sum_probs=162.6
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|..+ +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 2 LEVENLSKVYPNG-----KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred eEEEeeeeecCCC-----cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 5678899988511 2359999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCC------------CC---HHHHHHHHHHhcchhhHhhccCCCcccccCCCcc
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 733 (1459)
.++|++|++.++. .|++||+.++.. .. .++..++++.+++... ......+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 145 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQ 145 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCccc
Confidence 2899999998886 599999987531 01 1234445555555432 2345679
Q ss_pred cCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeE
Q 000503 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQV 811 (1459)
Q Consensus 734 LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i 811 (1459)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999998888775 333122 3789999999999986 5999999999999
Q ss_pred EEecCHHHH
Q 000503 812 KWIGSSADL 820 (1459)
Q Consensus 812 ~~~g~~~~l 820 (1459)
++.|+++++
T Consensus 225 ~~~~~~~~~ 233 (243)
T TIGR02315 225 VFDGAPSEL 233 (243)
T ss_pred EecCCHHHh
Confidence 999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=321.62 Aligned_cols=195 Identities=24% Similarity=0.312 Sum_probs=164.1
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999998752 3456799
Q ss_pred EEeCCCcCCCc-cHHHhcCcCCC---C-ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM---N-DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1302 ~VpQdp~lf~g-TIReNLdp~~~---~-~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
|+||+|.++++ |++||+..... . .++.+.++++. +|+..........||+|||||++||||++++|
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAI---------VGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHH---------cCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 99999854211 1 12223333333 35544444555679999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeC
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDH 1430 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~ 1430 (1459)
+||+|||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999998653 47899999999999976 799999875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=333.31 Aligned_cols=202 Identities=26% Similarity=0.394 Sum_probs=170.3
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|... . +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISFRYPDA-A---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEEEeCCC-C---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 58899999999532 1 2369999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.|+|++|+| .+++.||+|||.++.. +++ ++..++++.++|+..+... ...||||||||+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv 149 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRV 149 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHH
Confidence 489999998 4667899999987632 222 3456667777776554433 348999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
+||||++.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+..||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999988876 333122 378999999999998889999999999999999988875
Q ss_pred h
Q 000503 822 V 822 (1459)
Q Consensus 822 ~ 822 (1459)
.
T Consensus 229 ~ 229 (279)
T PRK13635 229 K 229 (279)
T ss_pred c
Confidence 4
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=293.90 Aligned_cols=219 Identities=24% Similarity=0.405 Sum_probs=186.2
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCC----------
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---------- 1291 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i---------- 1291 (1459)
.++.+|+..+|.+. .|||+||++.++|+.|.|+|.|||||||++.++.=+-.|+.|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58899999999765 499999999999999999999999999999999999999999999999887532
Q ss_pred ---ChHHHhcccEEEeCCCcCCCc-cHHHhcC--cCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhH
Q 000503 1292 ---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD--PFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1362 (1459)
Q Consensus 1292 ---~~~~lR~~i~~VpQdp~lf~g-TIReNLd--p~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQ 1362 (1459)
.++.+|+++++|.|+--|.+- |+-||.- |-. ...++.+..| ..+++..|++..-..-...|||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHhCchhhhhcCccccCchH
Confidence 256789999999999888875 9999973 322 2223322222 122333366555556667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChh
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1440 (1459)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~ 1440 (1459)
+||.+|||||.-+|+++++|||||+||++--..+.++|++.. .|+|.++|||-+...++ +..|+.+.+|+|-|+|+|+
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~ 237 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChH
Confidence 999999999999999999999999999999999999998765 59999999999999998 6999999999999999999
Q ss_pred HHhccCCc
Q 000503 1441 TLLQDECS 1448 (1459)
Q Consensus 1441 eLl~~~~~ 1448 (1459)
++..++.|
T Consensus 238 qvf~nP~S 245 (256)
T COG4598 238 QVFGNPQS 245 (256)
T ss_pred HHhcCCCC
Confidence 99999987
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.08 Aligned_cols=204 Identities=26% Similarity=0.333 Sum_probs=167.8
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 672 (1459)
..++++|+++.|.. . ++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD---F---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC---c---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 46899999999853 2 359999999999999999999999999999999999987 489998754
Q ss_pred ---------cEEEEcCCCCCCCCCHHHHhccCCC----CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccC
Q 000503 673 ---------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1459)
Q Consensus 673 ---------~i~y~~Q~~~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 735 (1459)
.++|++|++.+++.|++|||.++.. .+. ++..++++.+++...+. + ....+..+||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LS 152 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLS 152 (254)
T ss_pred cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCC
Confidence 3899999999998999999987642 122 23344555555532221 1 2344677999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988875 333 3456899999999999765 999999999999999
Q ss_pred cCHHHHHh
Q 000503 815 GSSADLAV 822 (1459)
Q Consensus 815 g~~~~l~~ 822 (1459)
|+++++..
T Consensus 231 g~~~~~~~ 238 (254)
T PRK14273 231 SSTDELFF 238 (254)
T ss_pred CCHHHHHh
Confidence 99988754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.98 Aligned_cols=201 Identities=27% Similarity=0.377 Sum_probs=166.4
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC-----CeEEEEcC--------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG-------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~-----~G~i~~~~-------- 672 (1459)
++++|+++.|.. . .+++|+||++++||+++|+|+||||||||+++|+|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE---K---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC---e---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 678899998853 1 3599999999999999999999999999999999999998 99998864
Q ss_pred -------cEEEEcCCCCCCCCCHHHHhccCCC----CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcH
Q 000503 673 -------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 -------~i~y~~Q~~~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 737 (1459)
.++|++|++++++.|++||+.++.. .+. ++..++++..++..+++ ........+||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 148 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGG 148 (247)
T ss_pred chHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHH
Confidence 3899999999999999999987532 122 23445555556553221 1234566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecC
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 738 QkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1459)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL-IQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988775 433 3345899999999998765 99999999999999999
Q ss_pred HHHHH
Q 000503 817 SADLA 821 (1459)
Q Consensus 817 ~~~l~ 821 (1459)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 88874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=343.32 Aligned_cols=204 Identities=28% Similarity=0.365 Sum_probs=167.0
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|++++|+... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 57899999986311 112469999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.|+|++|++.++. .|++|||.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qR 148 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQR 148 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3999999999886 699999987532 222 233444555554322 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~-~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1459)
|+||||++.+|+++||||||++||+.+.+.+.+. +... ...++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 3321 1237899999999999875 99999999999999999998
Q ss_pred HHhc
Q 000503 820 LAVS 823 (1459)
Q Consensus 820 l~~~ 823 (1459)
+...
T Consensus 228 ~~~~ 231 (343)
T PRK11153 228 VFSH 231 (343)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=360.10 Aligned_cols=221 Identities=24% Similarity=0.398 Sum_probs=179.9
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC-----CCceEEECCEeCCCCChH
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVR 1294 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~~~ 1294 (1459)
-|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 24699999999999999999999999999999999999987 799999999999877654
Q ss_pred H---Hh-cccEEEeCCCc--CCC-ccHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCch---hhhcCCCCCCh
Q 000503 1295 D---LR-GRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSV 1360 (1459)
Q Consensus 1295 ~---lR-~~i~~VpQdp~--lf~-gTIReNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lGLdt---~v~e~G~~LSg 1360 (1459)
. .| ++++||||+|. +++ -|+++|+... ...+.++.. ..+.+.++.+|++. .......+|||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 3 34 57999999985 444 4899987521 111221111 11233444456643 23555668999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998863 37899999999999876 8999999999999999
Q ss_pred ChhHHhccCC
Q 000503 1438 NPQTLLQDEC 1447 (1459)
Q Consensus 1438 ~p~eLl~~~~ 1447 (1459)
++++++..+.
T Consensus 240 ~~~~~~~~~~ 249 (529)
T PRK15134 240 RAATLFSAPT 249 (529)
T ss_pred CHHHHhhCCC
Confidence 9999976543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=337.89 Aligned_cols=202 Identities=25% Similarity=0.374 Sum_probs=167.5
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 46899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCCCC-CCHHHHhcc-CCC--CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 -SIAYVPQVPWILS-GTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~-~ti~~nI~~-g~~--~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
.||||||+|.++. .|++||+.+ +.. .+. ++..++++.+++.... .....+||||||||++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLT 148 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHH
Confidence 4999999999885 599999985 321 122 2334455555543221 2234589999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||||+.++|++++|||||++||+...+.+++. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988876 43322347899999999999875 99999999999999999999865
Q ss_pred c
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 228 ~ 228 (306)
T PRK13537 228 S 228 (306)
T ss_pred c
Confidence 4
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=361.43 Aligned_cols=211 Identities=19% Similarity=0.264 Sum_probs=179.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 4 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 899999999964 359999999999999999999999999999999999999999999999998877777778888999
Q ss_pred EeCCCcC--C-------CccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000503 1303 VPQSPFL--F-------EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1459)
Q Consensus 1303 VpQdp~l--f-------~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1459)
+||+|.+ + .-|+++|+.... ..++++.++++ .+|++.........||||||||++|||||+
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---------~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQ---------QFGITALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHH---------HcCCHhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999753 2 348888875421 11223333444 345554455556689999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445 (1459)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~ 1445 (1459)
++|++|||||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 152 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 152 SEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999998764 47899999999999877 899999999999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=334.15 Aligned_cols=186 Identities=30% Similarity=0.426 Sum_probs=156.5
Q ss_pred cceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------------cEEEEcCCCCCCC-C
Q 000503 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-G 686 (1459)
Q Consensus 625 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~~~l~~-~ 686 (1459)
.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 359999999999999999999999999999999999999999998865 4899999999885 5
Q ss_pred CHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcC
Q 000503 687 TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759 (1459)
Q Consensus 687 ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe 759 (1459)
|++||+.++.. ++ +++..++++.+++...+.. ...+||||||||++||||++.+|+++||||
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 22 2345566777776544433 335899999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 760 VLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 760 ~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||++||+.+.+.+.+. +.... ..++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 187 Pt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 187 AFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999988876 33211 237899999999998764 99999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=332.97 Aligned_cols=200 Identities=27% Similarity=0.413 Sum_probs=166.3
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|++++|+.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 2 IRLENVSYSYPDG-----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred EEEEEEEEEcCCC-----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 5788999998521 2359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCC--CCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.++|++|+|. +++.|++|||.++.. .++ ++..++++.++++.. .......||||||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv 145 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCV 145 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHH
Confidence 3899999986 567899999987632 222 234455565555433 2344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
+||||++.+|+++||||||++||+.+.+.+++. +.....+|.|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999998888876 3321234789999999999998899999999999999999888753
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.34 Aligned_cols=191 Identities=24% Similarity=0.330 Sum_probs=160.8
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------cEE
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 675 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i~ 675 (1459)
+++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (208)
T cd03268 2 KTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75 (208)
T ss_pred EEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE
Confidence 57889998842 2359999999999999999999999999999999999999999999876 389
Q ss_pred EEcCCCCCC-CCCHHHHhccCC---CCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccC
Q 000503 676 YVPQVPWIL-SGTIRDNILFGK---NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1459)
Q Consensus 676 y~~Q~~~l~-~~ti~~nI~~g~---~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1459)
||+|++.++ +.|++||+.++. ..++++.+++++..+++.... .....|||||||||+||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999877 469999997653 234556667777777654332 34568999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999988775 33212357899999999999875 9999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=368.85 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=189.0
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHH---
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l--- 1296 (1459)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcccEEEeCCCcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000503 1297 -RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1297 -R~~i~~VpQdp~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1459)
|++++|+||+|.+|++ |+.||++... ..+.++ .+....+.++.+|++..++.....||+||+||++||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999999975 9999997421 111111 12233455666688887888888999999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCeEEEecChhHHh
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
|+++|++|||||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..|||+++|++|++++.|+++|..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999998764 489999999999999889999999999999999999886
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.22 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=161.5
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|..+ .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 2 EVENLSKTYPNG-----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred EEeeEEEecCCc-----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 578888888531 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCC-CCHHHHhccCCC------------CC---HHHHHHHHHHhcchhhHhhccCCCcccccCCCccc
Q 000503 673 --SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 734 (1459)
.++|++|++.++. .|++||+.++.. .+ .++..++++..++.. .....+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 145 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQL 145 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccC
Confidence 3899999998876 699999986531 11 122333444444432 234566799
Q ss_pred CcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEE
Q 000503 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812 (1459)
Q Consensus 735 SGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~ 812 (1459)
||||||||+||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|+++
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988876 333122 3789999999999988 59999999999999
Q ss_pred EecCHHHH
Q 000503 813 WIGSSADL 820 (1459)
Q Consensus 813 ~~g~~~~l 820 (1459)
+.|+++++
T Consensus 225 ~~~~~~~~ 232 (241)
T cd03256 225 FDGPPAEL 232 (241)
T ss_pred eecCHHHh
Confidence 99998876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=360.39 Aligned_cols=214 Identities=24% Similarity=0.369 Sum_probs=178.5
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCC--CCceEEECCEeCCCCChHH-Hhcc
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRGR 1299 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~~ 1299 (1459)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999963 3699999999999999999999999999999999999987 7999999999998877554 4678
Q ss_pred cEEEeCCCcCCCc-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhh-hcCCCCCChhHHHHHHHHH
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLAR 1370 (1459)
Q Consensus 1300 i~~VpQdp~lf~g-TIReNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lGLdt~v-~e~G~~LSgGQrQrl~LAR 1370 (1459)
++||||+|.+|+. |+++|+..... ...++.. ....+.++.+|++... ......||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 9999999988875 99999965321 1111111 1233445555665432 2334579999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHh
Q 000503 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1443 (1459)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl 1443 (1459)
||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 9999999999999999999999999999998753 47899999999999976 8999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=325.87 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=174.8
Q ss_pred cEEEEEEEEEecCC------------------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEE
Q 000503 1222 LIEFQNVTMRYKPS------------------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~------------------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~I 1283 (1459)
.|+++||+..|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888777541 235899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHHhcccEEEeCCCcCCC-ccHHHhcCcC---CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCC
Q 000503 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1359 (1459)
Q Consensus 1284 DG~di~~i~~~~lR~~i~~VpQdp~lf~-gTIReNLdp~---~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LS 1359 (1459)
||. +++++|++.+++ .|+++|+... ...+.++..+.. .+.++..+++..+......||
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~LS 145 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEFSELGEFIYQPVKKYS 145 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHcCCchhhcCCcccCC
Confidence 994 456788887664 5999998642 122333332221 222333367776777778899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
+|||||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g 225 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999987753 48899999999999876 8999999999999999
Q ss_pred ChhHHhccCCcHHHHH
Q 000503 1438 NPQTLLQDECSVFSSF 1453 (1459)
Q Consensus 1438 ~p~eLl~~~~~~f~~l 1453 (1459)
++++++++....|+..
T Consensus 226 ~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 226 ELDDVLPKYEAFLNDF 241 (264)
T ss_pred CHHHHHHHhHHHHHHH
Confidence 9999998665444433
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=323.29 Aligned_cols=197 Identities=26% Similarity=0.439 Sum_probs=163.4
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------cE
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 674 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~i 674 (1459)
+++|+++.|... . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 2 ~~~~l~~~~~~~-~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (220)
T cd03263 2 QIRNLTKTYKKG-T---KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77 (220)
T ss_pred EEEeeEEEeCCC-C---ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE
Confidence 578888888532 1 2359999999999999999999999999999999999999999998876 38
Q ss_pred EEEcCCCCCC-CCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHH
Q 000503 675 AYVPQVPWIL-SGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1459)
Q Consensus 675 ~y~~Q~~~l~-~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1459)
+|++|++.++ +.|++||+.++.. .++ ++..++++.+++.... .....+||||||||++|||
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~ 146 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAI 146 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHH
Confidence 9999999888 5699999986421 222 3455666666664322 2344689999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
|++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDL-ILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999988875 333 3346899999999999875 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=329.14 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=170.2
Q ss_pred CCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---- 672 (1459)
+...++++|+++.|.. . ++|+|+||+|++|++++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---F---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCC---e---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3456889999999853 2 35999999999999999999999999999999999986 5899998764
Q ss_pred -----------cEEEEcCCCCCCCCCHHHHhccCCC----CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcc
Q 000503 673 -----------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1459)
Q Consensus 673 -----------~i~y~~Q~~~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 733 (1459)
.++|++|+|.++..|++||+.++.. +++ ++..++++..++..++. ...+....+
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 156 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYS 156 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCC
Confidence 4899999999988999999987532 232 23445566666543332 234567789
Q ss_pred cCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEE
Q 000503 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1459)
Q Consensus 734 LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~ 812 (1459)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|+++
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITE-LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988776 333 3346899999999999864 9999999999999
Q ss_pred EecCHHHHHh
Q 000503 813 WIGSSADLAV 822 (1459)
Q Consensus 813 ~~g~~~~l~~ 822 (1459)
+.|+.+++..
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999888753
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.95 Aligned_cols=191 Identities=26% Similarity=0.369 Sum_probs=156.0
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|+.... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGE--KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCc--ceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57888998853210 12469999999999999999999999999999999999999999998754
Q ss_pred ---cEEEEcCCCCCCCC-CHHHHhccCCCC---C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~-ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|+|.++.. |++||+.++..+ + +++..++++..+++.. ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHH
Confidence 38999999998876 999999875422 1 2344555665555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeE
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i 811 (1459)
|+||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMEL-LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998888776 333122 37899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=324.85 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=162.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSV--QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCc--ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4789999999964211 12469999999999999999999999999999999999999999998875
Q ss_pred -----cEEEEcCCCCCCCC-CHHHHhccCC---CCCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 -----~i~y~~Q~~~l~~~-ti~~nI~~g~---~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.++|++|+|.++.. |++||+.++. ..++ ++..++++.+++... ......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGER 151 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHH
Confidence 38999999988865 9999998642 1222 234555666655432 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecC
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1459)
||++||||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999888775 33211 24789999999999998889999999999998765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.28 Aligned_cols=199 Identities=25% Similarity=0.375 Sum_probs=164.1
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------c
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1459)
++++|+++.|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 2 LEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred EEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 568899998852 2359999999999999999999999999999999999999999998876 3
Q ss_pred EEEEcCCCCC-CCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWI-LSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l-~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
++|++|++.+ ++.|++||+.++.. .+++ +..+.++..++. ...+....+||||||||++||
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHH
Confidence 8999999987 46799999986532 2222 223334443332 224556679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHHh
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999988876 33212 24789999999999998899999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=322.84 Aligned_cols=198 Identities=27% Similarity=0.415 Sum_probs=160.8
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|.. . ++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (222)
T cd03224 2 EVENLNAGYGK---S---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75 (222)
T ss_pred EEeeEEeecCC---e---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhc
Confidence 57888888752 2 359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCCC-CHHHHhccCCCCC--H---HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHH
Q 000503 673 SIAYVPQVPWILSG-TIRDNILFGKNYD--P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~~-ti~~nI~~g~~~~--~---~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1459)
.++|++|++.++.. |++||+.++.... . ++..++++... .+ ......+..+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l----~~~~~~~~~~LS~G~~qrv~lar 145 (222)
T cd03224 76 GIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RL----KERRKQLAGTLSGGEQQMLAIAR 145 (222)
T ss_pred CeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hh----hhhhhCchhhCCHHHHHHHHHHH
Confidence 38999999998876 9999998764321 1 12223333321 11 11234567799999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHH
Q 000503 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
|+..+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999988876 33312257899999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=324.80 Aligned_cols=202 Identities=28% Similarity=0.402 Sum_probs=164.2
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|..... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCC--ceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 578899999863210 01469999999999999999999999999999999999999999998764
Q ss_pred ---cEEEEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|+|.++. .|++||+.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQR 148 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHH
Confidence 3899999999986 599999987532 222 233444555554332 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1459)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999888776 332122 37899999999999865 99999999999999999887
Q ss_pred HH
Q 000503 820 LA 821 (1459)
Q Consensus 820 l~ 821 (1459)
+.
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 64
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=326.12 Aligned_cols=197 Identities=29% Similarity=0.364 Sum_probs=164.5
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------cEE
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~ 675 (1459)
..++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 45899999999852 2359999999999999999999999999999999999999999998876 489
Q ss_pred EEcCCCCCCC-CCHHHHhccCCCC-CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCC
Q 000503 676 YVPQVPWILS-GTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 753 (1459)
Q Consensus 676 y~~Q~~~l~~-~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~ 753 (1459)
|++|+|.++. .|++||+.++... .+++..++++..++... ......+||||||||++||||++.+|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998886 6999999876321 23455566666666433 234557999999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 754 IYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 754 illlDe~~s~lD~~~~~~i~~~~~~~~-~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
++||||||++||+.+.+.+.+. +... ...++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999888775 3321 123789999999999876 49999999999999877643
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.40 Aligned_cols=188 Identities=32% Similarity=0.437 Sum_probs=154.4
Q ss_pred EEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------cEEEEcC
Q 000503 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVPQ 679 (1459)
Q Consensus 608 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y~~Q 679 (1459)
++|+++.|+. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 4677787742 2359999999999999999999999999999999999999999999987 3999999
Q ss_pred CCCC---CCCCHHHHhccCCCC-----------CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 680 VPWI---LSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 680 ~~~l---~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
+|.+ ++.|++||+.++... ++++.+++++.++++..+. ....+||||||||++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 144 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHH
Confidence 9976 557999999875321 1234566677777654333 24458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++| +++.
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999988876 33212257899999999999865 9999999886 5443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.42 Aligned_cols=191 Identities=30% Similarity=0.422 Sum_probs=157.1
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------cEE
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 675 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i~ 675 (1459)
+++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03301 2 ELENVTKRFGN---V---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75 (213)
T ss_pred EEEeeEEEECC---e---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE
Confidence 57888888853 2 359999999999999999999999999999999999999999999875 389
Q ss_pred EEcCCCCCCC-CCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHH
Q 000503 676 YVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 676 y~~Q~~~l~~-~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1459)
|++|++.++. .|++||+.++.. .+++ +..+.++..+++.. ......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 599999987522 2222 33444555555432 234456899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
++.+|++++|||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999988876 332122 37899999999998775 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=322.21 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=163.0
Q ss_pred EEEEEEEEEecC----C-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEEC--C--EeCCCCCh
Q 000503 1223 IEFQNVTMRYKP----S-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD--G--LNIINTPV 1293 (1459)
Q Consensus 1223 I~f~nVs~~Y~~----~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ID--G--~di~~i~~ 1293 (1459)
|+++|++++|+. + ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---H-hcccEEEeCCCcCCCc-cHHHhcCcC---CCCChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHH
Q 000503 1294 RD---L-RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQ 1364 (1459)
Q Consensus 1294 ~~---l-R~~i~~VpQdp~lf~g-TIReNLdp~---~~~~d~ei~~aL~~~~l~~~i~~lGLdt~-v~e~G~~LSgGQrQ 1364 (1459)
.. + +++++|+||+|.+|+. |++||+... .....++.. ....+.++.+|++.. ....+.+||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAAR-----ARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 43 3 4679999999988875 999998642 111111111 122344455566543 34566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hcCEEEEE
Q 000503 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1428 (1459)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlVl 1428 (1459)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+. .||||+.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999998764 4789999999999886 48999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=335.34 Aligned_cols=202 Identities=26% Similarity=0.392 Sum_probs=166.2
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 45889999999852 2359999999999999999999999999999999999999999999865
Q ss_pred -cEEEEcCCCCCCC-CCHHHHhcc-CC--CCCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHH
Q 000503 673 -SIAYVPQVPWILS-GTIRDNILF-GK--NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~-~ti~~nI~~-g~--~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRva 743 (1459)
.+||++|++.++. .|++||+.+ +. ..+.+ +.+++++.+++... ......+||||||||++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 145 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLT 145 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHH
Confidence 4999999998885 599999974 22 12322 23344444444322 23345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHh
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 822 (1459)
||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999988876 33312357899999999999875 99999999999999999999864
Q ss_pred c
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 225 ~ 225 (303)
T TIGR01288 225 E 225 (303)
T ss_pred h
Confidence 3
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=343.08 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=167.7
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|++++|.. +.+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 4788999999852 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCC-CCCCHHHHhccCCC-----C------CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 -SIAYVPQVPWI-LSGTIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 -~i~y~~Q~~~l-~~~ti~~nI~~g~~-----~------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.+|||+|++.+ ++.|++||+.++.. + +.++.+++++..++.+.. .....+||||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGer 145 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGER 145 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 48999999987 56799999988641 1 123455566666654322 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
||++|||||+++|+++||||||++||+.+...+++. +.....+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL-VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999998888765 3321224789999999999986 59999999999999999999
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 225 ev~~ 228 (402)
T PRK09536 225 DVLT 228 (402)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=328.58 Aligned_cols=207 Identities=26% Similarity=0.331 Sum_probs=172.1
Q ss_pred CCCceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC---
Q 000503 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG--- 672 (1459)
Q Consensus 601 ~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~--- 672 (1459)
.....++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CCCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 34457899999999852 235999999999999999999999999999999999986 5899998765
Q ss_pred ------------cEEEEcCCCCCCCCCHHHHhccCCC----CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCc
Q 000503 673 ------------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1459)
Q Consensus 673 ------------~i~y~~Q~~~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 732 (1459)
.++|++|++.++..|++|||.++.. .++ ++..++++.+++..++. +..+..+.
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~ 162 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSAL 162 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcc
Confidence 3899999999998999999987532 122 33455666666654432 23456778
Q ss_pred ccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeE
Q 000503 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQV 811 (1459)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i 811 (1459)
+||||||||++||||++.+|++++|||||++||+.+.+++.+. +.. +.++.|+|++||+++.+. .||++++|++|++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFE-LKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999998888775 333 345689999999999886 4999999999999
Q ss_pred EEecCHHHHHh
Q 000503 812 KWIGSSADLAV 822 (1459)
Q Consensus 812 ~~~g~~~~l~~ 822 (1459)
++.|+++++..
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999988753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=328.78 Aligned_cols=204 Identities=23% Similarity=0.345 Sum_probs=169.2
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-----
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG----- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~----- 672 (1459)
+..++++|+++.|.. . ++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE---K---QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC---E---EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 457899999999852 2 359999999999999999999999999999999999975 899998765
Q ss_pred ----------cEEEEcCCCCCCCCCHHHHhccCCC---C--C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcc
Q 000503 673 ----------SIAYVPQVPWILSGTIRDNILFGKN---Y--D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1459)
Q Consensus 673 ----------~i~y~~Q~~~l~~~ti~~nI~~g~~---~--~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 733 (1459)
.++|++|+|.+++.|++||+.++.. . + .++..++++.+++..++. +..+..+.+
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 163 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTG 163 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCccc
Confidence 3899999999998899999987531 1 1 123455666666643322 123456779
Q ss_pred cCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEE
Q 000503 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1459)
Q Consensus 734 LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~ 812 (1459)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|+++
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL-IDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998888775 433 3346899999999999865 9999999999999
Q ss_pred EecCHHHHH
Q 000503 813 WIGSSADLA 821 (1459)
Q Consensus 813 ~~g~~~~l~ 821 (1459)
+.|+++++.
T Consensus 242 ~~g~~~~~~ 250 (267)
T PRK14235 242 EVGDTEKMF 250 (267)
T ss_pred EeCCHHHHH
Confidence 999988875
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=316.95 Aligned_cols=193 Identities=22% Similarity=0.309 Sum_probs=162.2
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .. .|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998753 22 7889999
Q ss_pred EeCCCcCC-CccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf-~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
++|++.++ ..|+++|+..... ..++++.++++..++. .........||||||||++||||++++|++
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA---------PLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH---------HHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 99988775 5799999864321 2233455555555443 333334457999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhhcCEEEEEeC
Q 000503 1379 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILILDH 1430 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~-~~~~TvI~IaHrl~ti~~~DrIlVl~~ 1430 (1459)
|||||||++||..+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999875 358999999999999998 99988754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.44 Aligned_cols=190 Identities=24% Similarity=0.353 Sum_probs=157.6
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------c
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1459)
++++|+++.|.. . ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK---K---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC---E---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 357889998853 1 3599999999999 9999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCC-CHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
++|++|+|.++.. |++||+.+... .+ +++.+++++.+++....+ ....+||||||||++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 142 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIA 142 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHH
Confidence 8999999998875 99999986421 12 234455666666653322 34468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
||++++|+++||||||++||+.+.+++.+. +.. ..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNL-LSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999988876 333 3345899999999999864 9999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=330.24 Aligned_cols=206 Identities=24% Similarity=0.376 Sum_probs=170.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|++++|+...+...+++|+|+||+|++|++++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 47899999999643210113469999999999999999999999999999999999999999998875
Q ss_pred --cEEEEcCCCC--CCCCCHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 --~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|+|. +++.|+.||+.|+.. .+ +++.+++++.++|..... ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999985 666799999998632 22 234566677777765443 3346899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
++||||++.+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988775 333112 37899999999999888999999999999999999988
Q ss_pred Hh
Q 000503 821 AV 822 (1459)
Q Consensus 821 ~~ 822 (1459)
..
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 54
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.07 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=161.6
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|+. +.+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 2 RAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred eEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 57888998852 2359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCCC-CHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHH
Q 000503 673 SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRval 744 (1459)
.++|++|++.++.+ |++||+.++.+ .++ ++.++.++..++.. .......+||||||||++|
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 38999999988876 99999987532 121 12334444444432 2345667999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHH
Q 000503 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
|||+..+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999888775 33212347899999999987765 9999999999999999887764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=309.17 Aligned_cols=166 Identities=33% Similarity=0.550 Sum_probs=148.6
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------c
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1459)
++++|+++.|.... +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQE----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCC----ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 35789999986421 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCC
Q 000503 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 753 (1459)
Q Consensus 674 i~y~~Q~~~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~ 753 (1459)
++|++|+|++++.|++||| ..+||||||||++||||++.+|+
T Consensus 77 i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 77 ISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998 45899999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCCeEEEec
Q 000503 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 754 illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g 815 (1459)
++||||||++||+.+.+.+++. +.. +.+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSL-IFE-VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999888876 333 34578999999999999889999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=331.08 Aligned_cols=201 Identities=23% Similarity=0.361 Sum_probs=168.2
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSDG-----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 58899999999521 2359999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHH
Q 000503 673 ---SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1459)
Q Consensus 673 ---~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 740 (1459)
.++|++|+| .+++.|++|||.++.. +.. ++..++++.++|... ......+|||||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~q 148 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKK 148 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHH
Confidence 389999998 5778899999987531 221 344556666666432 23567799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHH
Q 000503 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 741 RvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1459)
|++|||||+.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888775 332122 2789999999999987 59999999999999999998
Q ss_pred HHHh
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 228 ~~~~ 231 (283)
T PRK13636 228 EVFA 231 (283)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=331.13 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=169.1
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC---eEEEEcC--------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASG-------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~---G~i~~~~-------- 672 (1459)
..++++|+++.|+.. . .++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~---~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-K---KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC-C---ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 458899999999632 1 235999999999999999999999999999999999999988 8998865
Q ss_pred -----cEEEEcCCCC--CCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 -----SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 -----~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.++||+|+|+ +++.|++|||.++.. .++ ++..++++.++++.... ....+|||||
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~ 148 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQ 148 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHH
Confidence 4899999995 567899999987632 233 23455666676654333 3446999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCH
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~ 817 (1459)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+..||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 333122 37899999999999888999999999999999999
Q ss_pred HHHHh
Q 000503 818 ADLAV 822 (1459)
Q Consensus 818 ~~l~~ 822 (1459)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=320.71 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=160.0
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------c
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1459)
++++|+++.|+... ...++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57889999986421 112469999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCCC-CHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
++|++|+|.++.. |++||+.+... .+ .++..+.++..++... ......+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHH
Confidence 8999999998875 99999976321 22 2234455565555432 3345679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+.+.+.. ||++++|++|++.+.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999998888776 33312347899999999998765 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=331.95 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=167.3
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|..... ...++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4678999999963211 012469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 -----~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.++|++|+| .+++.|++|||.++.. .+. ++.+++++.++++.+. ......+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHH
Confidence 389999998 5777899999987531 222 2345556666664222 234566899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCH
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~ 817 (1459)
|||++||||+..+|+++||||||++||+...+.+.+. +.....++.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998888775 4331234789999999999876 5999999999999999999
Q ss_pred HHHHh
Q 000503 818 ADLAV 822 (1459)
Q Consensus 818 ~~l~~ 822 (1459)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 88753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=324.97 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=162.9
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------c
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1459)
+++|+++.|+.. .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 2 EFENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEEEEeCCc-----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 578889988631 2359999999999999999999999999999999999999999998865 4
Q ss_pred EEEEcCCCCCCC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 i~y~~Q~~~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
++|++|+|.++. .|++||+.++.. .+. ++..++++..++.. .......+.+||||||||++||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHH
Confidence 899999999886 599999987532 222 23344445444432 0123456679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHH
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
||++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998888776 332122 3789999999999876 49999999999999999888764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=326.56 Aligned_cols=203 Identities=26% Similarity=0.320 Sum_probs=167.7
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcC---ccC--CCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE---MML--THGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~---~~~--~~G~i~~~~------- 672 (1459)
.++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|+|. .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 5789999999853 2359999999999999999999999999999999996 454 589998764
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCC----CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|+|.+++.|++||+.++.. .+ +++..++++.+++..++. +.....+.+|||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 149 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSG 149 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCH
Confidence 3899999999998899999987531 11 223455666666644332 223466789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999988776 433 3457899999999999864 9999999999999999
Q ss_pred CHHHHHh
Q 000503 816 SSADLAV 822 (1459)
Q Consensus 816 ~~~~l~~ 822 (1459)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14245 228 DTKKIFT 234 (250)
T ss_pred CHHHHhc
Confidence 9998753
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=326.48 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=166.7
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc--C---CCeEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM--L---THGSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~--~---~~G~i~~~~------ 672 (1459)
..++++|+++.|.. .++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 45899999998852 235999999999999999999999999999999999987 3 689998754
Q ss_pred ---------cEEEEcCCCCCCCCCHHHHhccCCCC----CHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccC
Q 000503 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1459)
Q Consensus 673 ---------~i~y~~Q~~~l~~~ti~~nI~~g~~~----~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 735 (1459)
.++|++|+|.+++.|++||+.++... +++ +..++++..++.+++. +.....+.+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS 157 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLS 157 (259)
T ss_pred ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCC
Confidence 38999999999989999999876321 222 2333444555543221 22355677999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
||||||++||||++.+|++++|||||++||+++.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998888765 433 3446899999999999764 999999999999999
Q ss_pred cCHHHHHh
Q 000503 815 GSSADLAV 822 (1459)
Q Consensus 815 g~~~~l~~ 822 (1459)
|+++++..
T Consensus 236 g~~~~~~~ 243 (259)
T PRK14274 236 NDTNKMFS 243 (259)
T ss_pred CCHHHHhh
Confidence 99998753
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=363.88 Aligned_cols=199 Identities=25% Similarity=0.330 Sum_probs=167.8
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCC--CceEEECCEeCCCCChHHHhcccEEEeCCCcCCCc-c
Q 000503 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-S 1313 (1459)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~--~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~g-T 1313 (1459)
+.+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 899999999874 2456789999999999975 9
Q ss_pred HHHhcCcCC------CCChHHHHHHHHHhcHHHHHHhCCC----chhhhc-CCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000503 1314 LRDNLDPFH------MNDDLKIWSVLEKCHVKEEVEAVGL----ETFVKE-SGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1314 IReNLdp~~------~~~d~ei~~aL~~~~l~~~i~~lGL----dt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1459)
+|||+.+.. ..++++..+ ...+.++.+|| ||.+|+ ....||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKIL-----VAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHH-----HHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999996531 123333221 12344555555 666764 35679999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhcCEEEEEeCCeEEEecChhHHhc
Q 000503 1383 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1383 EaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~t-i-~~~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
|||++||+.+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998865 58999999999984 4 4589999999999999999999874
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=328.11 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=167.3
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|+.. . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~~-~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS-E---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC-C---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 468899999998532 1 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCC--CCCCCHHHHhccCCC---CCHHH----HHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQS----YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 --~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~~~----~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++||+|+|. +++.|++|||.++.. ++++. ..++++..++...+ .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQR 150 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHH
Confidence 3899999984 556799999987532 33332 34555666665433 34456999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~-~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
++||||++.+|+++||||||++||+.+.+.+++. +.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKI-MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988876 3321223 4899999999999888999999999999999998876
Q ss_pred Hh
Q 000503 821 AV 822 (1459)
Q Consensus 821 ~~ 822 (1459)
..
T Consensus 230 ~~ 231 (271)
T PRK13632 230 LN 231 (271)
T ss_pred hc
Confidence 43
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=337.28 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=167.7
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1459)
...++++|++..|.. ..+|+|+||+|++|++++++||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 356899999999853 2359999999999999999999999999999999999999999999876
Q ss_pred --cEEEEcCCCCCC-CCCHHHHhcc-CCC--CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 --SIAYVPQVPWIL-SGTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 --~i~y~~Q~~~l~-~~ti~~nI~~-g~~--~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.||||||++.++ +.|++||+.+ +.. .+. ++.+++++.++|... ...+..+||||||||+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRL 181 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHH
Confidence 499999999986 4599999975 321 122 223344444444321 2234468999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
+||||+.++|+++||||||++||+.+.+.+.+. +......|+|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999988876 33322357899999999999875 9999999999999999999986
Q ss_pred hc
Q 000503 822 VS 823 (1459)
Q Consensus 822 ~~ 823 (1459)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=327.70 Aligned_cols=201 Identities=24% Similarity=0.343 Sum_probs=165.0
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 46899999999852 2359999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCCCCCCC-CHHHHhccCC----CCCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 -----SIAYVPQVPWILSG-TIRDNILFGK----NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 -----~i~y~~Q~~~l~~~-ti~~nI~~g~----~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.++|++|++.+++. |++||+.++. .++.+ +..+.++..++... ......+|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 148 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGM 148 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 38999999999876 9999998642 12222 23344455544322 223456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecC
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1459)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999888775 332112 37899999999998875 99999999999999999
Q ss_pred HHHHHh
Q 000503 817 SADLAV 822 (1459)
Q Consensus 817 ~~~l~~ 822 (1459)
++++..
T Consensus 228 ~~~~~~ 233 (269)
T PRK11831 228 AQALQA 233 (269)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=337.92 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=172.9
Q ss_pred cEEEEEEEEEecCCC-CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhccc
Q 000503 1222 LIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
.++++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 489999999997542 4699999999999999999999999999999999999999999999999762
Q ss_pred EEEeCCCcCCC-ccHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000503 1301 AVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~VpQdp~lf~-gTIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1459)
++++.+.+++ .|+++|+.... ..++++..+. ..+.++.+|++.........||||||||++|||||+.+|
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~-----i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI-----IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2333444444 49999986532 2233332221 122333446666666667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..+.. .|.+++
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~-~~~~~~ 241 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD-EFLKKY 241 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH-HHHHHH
Confidence 9999999999999999999999998764 47899999999999876 89999999999999999999987533 454443
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=315.20 Aligned_cols=192 Identities=20% Similarity=0.273 Sum_probs=159.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EeCCCcCCC-ccHHHhcCcCCC-CC--hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000503 1303 VPQSPFLFE-GSLRDNLDPFHM-ND--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 VpQdp~lf~-gTIReNLdp~~~-~~--d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1459)
+||++.+|+ .|+++|+..... .. ++++.++++..++ +........+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL---------TGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCC---------HHHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999998887 699999864321 11 2234455555444 4334444567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhhcCEEEE
Q 000503 1379 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1427 (1459)
Q Consensus 1379 LlLDEaTS~lD~~te~~I~~~I~~~-~~~~TvI~IaHrl~ti~~~DrIlV 1427 (1459)
++|||||++||..+.+.+.+.|++. .++.|+|++||+...+. ||+++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999875 35789999999985543 477654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=326.82 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=167.9
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC-----
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~----- 672 (1459)
+..++++|+++.|.. ..+|+|+||+|++|++++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 356899999999853 235999999999999999999999999999999999987 6899998765
Q ss_pred ----------cEEEEcCCCCCCCCCHHHHhccCCCC---C---HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 ----------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 ----------~i~y~~Q~~~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|+|.++..|++||+.++... + +++..++++.+++...+. ........+|||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 157 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSG 157 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCH
Confidence 38999999999888999999876432 2 223344555555432221 234556779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeC-------
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDK------- 808 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~------- 808 (1459)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET-MHE-LKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999988775 333 3446899999999998864 999999996
Q ss_pred ----CeEEEecCHHHHHh
Q 000503 809 ----GQVKWIGSSADLAV 822 (1459)
Q Consensus 809 ----G~i~~~g~~~~l~~ 822 (1459)
|++++.|+.+++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=317.50 Aligned_cols=190 Identities=27% Similarity=0.374 Sum_probs=157.4
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------cE
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1459)
++++|+++.|.. . ..|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~----~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYGE----Q----PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeCC----E----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 357888888752 1 2399999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCCC-CHHHHhccCCCC-------CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHH
Q 000503 675 AYVPQVPWILSG-TIRDNILFGKNY-------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1459)
Q Consensus 675 ~y~~Q~~~l~~~-ti~~nI~~g~~~-------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1459)
+|++|+|.++.+ |++||+.++... ++++..++++.++++..... ...+||||||||++|||
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALAR 141 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 999999998875 999999875321 13345666777776544433 33589999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999988776 33211 237899999999999875 9999999999998653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=327.73 Aligned_cols=205 Identities=25% Similarity=0.307 Sum_probs=166.5
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC-----
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~----- 672 (1459)
+..++++|+++.|+. ..+|+|+||++++|++++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 346899999999852 235999999999999999999999999999999999864 6899998754
Q ss_pred ----------cEEEEcCCCCCCCCCHHHHhccCCCCC--------HHHHHHHHHHhcchhhHhhccCCCcccccCCCccc
Q 000503 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1459)
Q Consensus 673 ----------~i~y~~Q~~~l~~~ti~~nI~~g~~~~--------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 734 (1459)
.++|++|++.++++|++||+.++..+. +++..++++.+++..++. ...+....+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 165 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSL 165 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccC
Confidence 489999999999999999998753211 122333444444432221 2245667899
Q ss_pred CcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEE
Q 000503 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKW 813 (1459)
Q Consensus 735 SGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~ 813 (1459)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL-ITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988775 333 344689999999999876 499999999999999
Q ss_pred ecCHHHHHh
Q 000503 814 IGSSADLAV 822 (1459)
Q Consensus 814 ~g~~~~l~~ 822 (1459)
.|+++++..
T Consensus 244 ~~~~~~~~~ 252 (268)
T PRK14248 244 YDQTEQIFT 252 (268)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=340.04 Aligned_cols=188 Identities=26% Similarity=0.393 Sum_probs=158.1
Q ss_pred cceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------------------cEEEEcCCCCC
Q 000503 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------------SIAYVPQVPWI 683 (1459)
Q Consensus 625 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------------------~i~y~~Q~~~l 683 (1459)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 359999999999999999999999999999999999999999998875 39999999999
Q ss_pred CC-CCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEE
Q 000503 684 LS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755 (1459)
Q Consensus 684 ~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~il 755 (1459)
++ .|++|||.++.. .++ ++..++++..+|+... .....+|||||||||+|||||+.+|+|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 87 699999998642 222 2345566666664332 2344589999999999999999999999
Q ss_pred EEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 756 llDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|||||||+||+.+.+.+.+.+..-....++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999998888643211123789999999999875 5999999999999999999998643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=325.92 Aligned_cols=202 Identities=26% Similarity=0.344 Sum_probs=166.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------- 672 (1459)
.++++|+++.|.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999999853 235999999999999999999999999999999999997 4799998765
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCC---C-CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++..+.. ...+....+|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 150 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSG 150 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCH
Confidence 3899999999999999999987532 1 12 23445555555532211 123456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|||||++||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LME-LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHH-HHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999888776 333 3446899999999999765 9999999999999999
Q ss_pred CHHHHH
Q 000503 816 SSADLA 821 (1459)
Q Consensus 816 ~~~~l~ 821 (1459)
+.+++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 988874
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=317.77 Aligned_cols=191 Identities=23% Similarity=0.390 Sum_probs=157.2
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------cEEEE
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------SIAYV 677 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------~i~y~ 677 (1459)
+++|+++.|.. +++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 2 EVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred EEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 57888888752 2359999999999999999999999999999999999999999999986 49999
Q ss_pred cCCCCCCCC-CHHHHhccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHc
Q 000503 678 PQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1459)
Q Consensus 678 ~Q~~~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1459)
+|++.++.+ |++||+.+... .+ +++..+.++..+++.. ......+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHHHh
Confidence 999988875 99999976421 11 2234445555555432 23456789999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
.+|+++||||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988876 33212347899999999998865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=322.89 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=163.5
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|+. +++++|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 568899998852 2359999999999999999999999999999999999999999998875
Q ss_pred --cEEEEcCCCCCCC-CCHHHHhccCC----CCCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 --SIAYVPQVPWILS-GTIRDNILFGK----NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~-~ti~~nI~~g~----~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|++.++. .|++||+.++. ..+.+ +..++++..+++. ........||||||||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qr 144 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQQQR 144 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHHHHH
Confidence 3899999998875 59999998753 12222 2334444444432 2234557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999888775 33212347899999999999875 999999999999999998876
Q ss_pred Hh
Q 000503 821 AV 822 (1459)
Q Consensus 821 ~~ 822 (1459)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=319.69 Aligned_cols=193 Identities=26% Similarity=0.379 Sum_probs=156.9
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|+... ...++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 57889999986321 112469999999999999999999999999999999999999999998864
Q ss_pred ----cEEEEcCCCCCCC-CCHHHHhccCC---CCCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHH
Q 000503 673 ----SIAYVPQVPWILS-GTIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1459)
Q Consensus 673 ----~i~y~~Q~~~l~~-~ti~~nI~~g~---~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 740 (1459)
.++|++|+|.++. .|++||+.++. .++. ++..++++.++++.. ......+|||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~q 148 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQ 148 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 3899999998885 59999998742 2222 234455555555432 23445689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhcCCEEEEEeCCeEE
Q 000503 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1459)
Q Consensus 741 RvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~~d~i~~l~~G~i~ 812 (1459)
||+||||++.+|+++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+..+|+|++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988876 33211 2378999999999998889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=324.12 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=166.3
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC-----CeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~-----~G~i~~~~------- 672 (1459)
.++++|+++.|.. +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 5789999999853 23599999999999999999999999999999999999987 69997754
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCCC----CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|+|.+++.|++||+.++..+ .+ ++..++++..++...+. +..+..+.+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 150 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSG 150 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCH
Confidence 39999999999989999999876421 11 12233334444432222 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
||||||+||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999887765 433 3457899999999999876 8999999999999999
Q ss_pred CHHHHHh
Q 000503 816 SSADLAV 822 (1459)
Q Consensus 816 ~~~~l~~ 822 (1459)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14249 229 RTGEIFS 235 (251)
T ss_pred CHHHHHh
Confidence 9888743
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=326.20 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=166.8
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 672 (1459)
..++++|+++.|.. +++|+|+||+|++|++++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 46889999998852 2359999999999999999999999999999999999875 799998754
Q ss_pred ---------cEEEEcCCCCCCCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 ---------SIAYVPQVPWILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 ---------~i~y~~Q~~~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ........+|||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 157 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSG 157 (258)
T ss_pred cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCH
Confidence 3899999999988999999987531 2222 2344555555532221 223456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL-IMN-LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988775 333 3347899999999999865 9999999999999999
Q ss_pred CHHHHH
Q 000503 816 SSADLA 821 (1459)
Q Consensus 816 ~~~~l~ 821 (1459)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=302.35 Aligned_cols=206 Identities=26% Similarity=0.392 Sum_probs=167.2
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
.+++|.+..|.. ..+|++|||++++||+++++|+||+||||||++|.|..++.+|+|.++|
T Consensus 4 L~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 4 LEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred eeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 467788777753 2359999999999999999999999999999999999999999999987
Q ss_pred -cEEEEcCCCCCCCC-CHHHHhccCCCCCHH-HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHc
Q 000503 673 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~-ti~~nI~~g~~~~~~-~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1459)
.|+||||.-.+|.. ||+||+..|....+. ...+. .++.-.+.+|. .......++.+|||||||.+|+||||.
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 59999999999965 999999987433221 11110 02222334443 223456788899999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcch-hhcCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
++|++|+||||+.+|-|...+.|++. +.... ..+.||++|.++..+ ++.|||.|+|++|+|+.+|+.+|+..+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~-i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEA-IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHH-HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999987 33312 225699999999987 456999999999999999999998653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=324.61 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=168.7
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1459)
-++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYGE---K---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEECC---e---eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 4688999998852 2 359999999999999999999999999999999999875 799998864
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCCC----CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|++.+++.|++||+.++... ++ ++..++++.+++..++.. ..+.....|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCH
Confidence 38999999999999999999875321 22 234566677766443332 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. ..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~-~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVE-LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999988775 433 3346899999999999875 9999999999999999
Q ss_pred CHHHHHh
Q 000503 816 SSADLAV 822 (1459)
Q Consensus 816 ~~~~l~~ 822 (1459)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14270 229 KTEKIFL 235 (251)
T ss_pred CHHHHhc
Confidence 9888743
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=311.61 Aligned_cols=336 Identities=21% Similarity=0.295 Sum_probs=239.7
Q ss_pred HhhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCCCc
Q 000503 1082 TETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA----VIGSRGNLPATFS 1157 (1459)
Q Consensus 1082 ~E~l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~----v~~~~~~~~~~~~ 1157 (1459)
++...+.+.|.-|+.++..........++.-.......+...|+.+..+.+.- +..++...+ ++..+ .....
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y-lg~ilsy~vi~~p~Fs~h---~y~~~ 344 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY-LGGILSYVVIAIPFFSGH---VYDDL 344 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhheeeEEeeeeeccc---ccCCc
Confidence 34455667788888776655555554444444444455667787776665542 111111111 11111 12233
Q ss_pred hHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----C----------c---ccccc---CCCC
Q 000503 1158 TPGLV-GLALS---YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV----P----------Q---EELCG---YQSL 1213 (1459)
Q Consensus 1158 ~~g~v-gl~l~---~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~----~----------~---e~~~~---~~~~ 1213 (1459)
++... +..-. +...+.+.+..++....++..-.+-..||-|+.+. . + |.... ....
T Consensus 345 s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~ 424 (659)
T KOG0060|consen 345 SPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGS 424 (659)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCC
Confidence 34333 22211 22233344445555555555555667788777532 0 0 00000 0111
Q ss_pred CCCCCCCccEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCCh
Q 000503 1214 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293 (1459)
Q Consensus 1214 ~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1293 (1459)
+..||....|+|++|++.=|.+.+...+|+||+|+.|+.+-|+||||||||||++.|-|+.+..+|++.--...-
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----- 499 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----- 499 (659)
T ss_pred cccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence 345788889999999999876666667889999999999999999999999999999999999999997532110
Q ss_pred HHHhcccEEEeCCCcCCCccHHHhcC-cC-------CCCChHHHHHHHHHhcHHHHHHhC-CCchhhh-cCCCCCChhHH
Q 000503 1294 RDLRGRFAVVPQSPFLFEGSLRDNLD-PF-------HMNDDLKIWSVLEKCHVKEEVEAV-GLETFVK-ESGISFSVGQR 1363 (1459)
Q Consensus 1294 ~~lR~~i~~VpQdp~lf~gTIReNLd-p~-------~~~~d~ei~~aL~~~~l~~~i~~l-GLdt~v~-e~G~~LSgGQr 1363 (1459)
-+.+=++||.|++-.||+|+-+- |. +..+|++|.+.|+.++|.+.++.. |+|+++. +-...||+||+
T Consensus 500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 04589999999999999999973 31 235799999999999999999888 9997654 44567999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCC
Q 000503 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431 (1459)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~DrIlVl~~G 1431 (1459)
||+|+||.++.+|++-+|||+|||||.+.|..+.+.+|+. +-|-|.|.||-+.-+.-|.++-|+.+
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999999886 89999999999988888999999863
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=284.55 Aligned_cols=209 Identities=27% Similarity=0.362 Sum_probs=175.6
Q ss_pred cEEEEEEEEEecCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChH---HH
Q 000503 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1296 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~l 1296 (1459)
.|+.++++..-+.. .-.+|++|+|.|++||.+||||+||||||||+..|.|+-+|++|+|.+.|.++.+++-+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888887776543 23589999999999999999999999999999999999999999999999999988854 55
Q ss_pred h-cccEEEeCCCcCCCc-cHHHhcC-cC---CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000503 1297 R-GRFAVVPQSPFLFEG-SLRDNLD-PF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1459)
Q Consensus 1297 R-~~i~~VpQdp~lf~g-TIReNLd-p~---~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LAR 1370 (1459)
| +++++|+|.-.|.+. |--||.. |. ++...+. +....+.++..||...+..-..+|||||+||++|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~------~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS------RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccH------HHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 5 579999999988765 8899974 32 2211111 112233455558888888888899999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCeEEEe
Q 000503 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436 (1459)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlVl~~G~IvE~ 1436 (1459)
|+.-.|+||+-||||-|||.+|-+.|-+.+-+.- .+.|.++|||+......|||++-|.+|+++|.
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999886553 48899999999999999999999999999863
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=330.05 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=166.0
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3678999999864211 112469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCCCCHHHHhccCCC---CCHHH----HHHHHHHhcchhhHhhccCCCcccccCCCcccCcHH
Q 000503 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQS----YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1459)
Q Consensus 673 -----~i~y~~Q~~--~l~~~ti~~nI~~g~~---~~~~~----~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 738 (1459)
.|+|++|+| .+++.|++|||.++.. .+.+. .+++++..++..+ .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~ 150 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQ 150 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 289999998 5778899999987532 23222 2334444444321 1244567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCH
Q 000503 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 739 kqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1459)
|||++||||++.+|+++||||||++||+.+.+.+.+. +......++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999888776 33212347899999999998864 999999999999999998
Q ss_pred HHHHh
Q 000503 818 ADLAV 822 (1459)
Q Consensus 818 ~~l~~ 822 (1459)
+++..
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=324.78 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=165.6
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc--cC---CCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--ML---THGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~--~~---~~G~i~~~~------- 672 (1459)
.++++|+++.|.. +++|+|+||++++||+++|+||||||||||+++|.|.. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 4789999999853 23599999999999999999999999999999999985 36 589998765
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCC---C-CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSG 151 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCH
Confidence 3899999999999999999986521 1 12 22333455555433222 234566779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g 815 (1459)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET-LLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH-HHH-HhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988875 433 334689999999999876 59999999999999999
Q ss_pred CHHHHHh
Q 000503 816 SSADLAV 822 (1459)
Q Consensus 816 ~~~~l~~ 822 (1459)
+.+++..
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14239 230 DTKQMFM 236 (252)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=330.93 Aligned_cols=207 Identities=28% Similarity=0.397 Sum_probs=164.4
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35889999999864210 112469999999999999999999999999999999999999999998754
Q ss_pred -------cEEEEcCCCC--CCCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 -------SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 -------~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.|+|++|+|. +++.|++|||.++.. .+.+ +..++++..+|.. + ..+....+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~---~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------D---YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------h---HhcCChhhCCH
Confidence 3899999984 667899999987632 2221 1223333333321 1 12456679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEe
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 814 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~ 814 (1459)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999888775 332112 3789999999999876 5999999999999999
Q ss_pred cCHHHHHh
Q 000503 815 GSSADLAV 822 (1459)
Q Consensus 815 g~~~~l~~ 822 (1459)
|+++++..
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99888753
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=319.00 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=162.0
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 46889999998852 2359999999999999999999999999999999999999999998876
Q ss_pred --cEEEEcCCCCCCCCCHHHHhccCCC-----CCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHH
Q 000503 673 --SIAYVPQVPWILSGTIRDNILFGKN-----YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 673 --~i~y~~Q~~~l~~~ti~~nI~~g~~-----~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1459)
.++|++|++++++.|++||+.++.. .++++..+.++.+++.. +.......+|||||||||+||
T Consensus 80 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred HhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHH
Confidence 4899999999998999999986421 12233445555555432 223456779999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEcCCcchhhcCCEEEEEe-CCeEEEecCHH
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMD-KGQVKWIGSSA 818 (1459)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~i~vth~~~~l~~~d~i~~l~-~G~i~~~g~~~ 818 (1459)
||++++|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+.+.++.||++++|+ ++..+++|+|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 150 RNLQFMPKVLLLDEITSALDESNKHNVNEI-IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999998877765 33211 23789999999999998899999995 56666777764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=322.59 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=163.9
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1459)
++++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 3 LYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred EEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 678999998852 2359999999999999999999999999999999999999999999875
Q ss_pred -cEEEEcCCCCCCCC-CHHHHhccCCCCC---------------HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccC
Q 000503 673 -SIAYVPQVPWILSG-TIRDNILFGKNYD---------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1459)
Q Consensus 673 -~i~y~~Q~~~l~~~-ti~~nI~~g~~~~---------------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 735 (1459)
.++|++|++.++++ |++||+.++...+ +++..+.++..+++ ........+||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 145 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAGLLS 145 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCC
Confidence 38999999999886 9999998753211 12233333333332 22345667999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEe
Q 000503 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1459)
Q Consensus 736 GGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1459)
||||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.++. ||+|++|++|++++.
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL-LKS-LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH-HHH-HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999999988875 332 3346899999999999875 999999999999999
Q ss_pred cCHHHHH
Q 000503 815 GSSADLA 821 (1459)
Q Consensus 815 g~~~~l~ 821 (1459)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=359.41 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=175.6
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccC--CCCCceEEEC----------------
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVD---------------- 1284 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~ID---------------- 1284 (1459)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999953 36999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---hHHHhcccEEEeCC-CcCCCc-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHH
Q 000503 1285 -------GLNII-------NTP---VRDLRGRFAVVPQS-PFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEV 1342 (1459)
Q Consensus 1285 -------G~di~-------~i~---~~~lR~~i~~VpQd-p~lf~g-TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i 1342 (1459)
|.++. ..+ ...+|++++++||+ +.+|+. |+++|+.+.. ..+.++.. ....+.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l 153 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDLI 153 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHH
Confidence 33331 111 23467889999998 567764 9999986421 12222211 1233445
Q ss_pred HhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh
Q 000503 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1420 (1459)
Q Consensus 1343 ~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I~~~I~~~~--~~~TvI~IaHrl~ti~ 1420 (1459)
+.+|++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 55577666666677899999999999999999999999999999999999999999998864 3789999999999987
Q ss_pred h-cCEEEEEeCCeEEEecChhHHhc
Q 000503 1421 N-MDEILILDHGHLVEQGNPQTLLQ 1444 (1459)
Q Consensus 1421 ~-~DrIlVl~~G~IvE~G~p~eLl~ 1444 (1459)
. ||+|++|++|++++.|+++++..
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHH
Confidence 6 89999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=319.04 Aligned_cols=193 Identities=25% Similarity=0.391 Sum_probs=159.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCcC---CCccHHHhcCcC
Q 000503 1245 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL---FEGSLRDNLDPF 1321 (1459)
Q Consensus 1245 l~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l---f~gTIReNLdp~ 1321 (1459)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..|++++|+||+|.+ |+.|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 457999998543
Q ss_pred CC--------CC---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCH
Q 000503 1322 HM--------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390 (1459)
Q Consensus 1322 ~~--------~~---d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~ 1390 (1459)
.. .. ++++.++++. +|++.........||+|||||++||||++++|+++||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRR---------VGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHH---------hCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11 01 1223333333 3555445555567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000503 1391 QTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1391 ~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G~p~eLl~~~~~~f~~l~ 1454 (1459)
.+.+.+.+.|++.. +++|+|++||+++.+.+ ||+|+++ +|++++.|+++++.++. ...+++
T Consensus 147 ~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~--~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA--PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH--HHHHHh
Confidence 99999999998764 47899999999998876 8999999 79999999999997642 344443
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=327.12 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=167.1
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.. ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSGS-----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCCC-----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 36789999998532 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCC--CCCCCHHHHhccCC---CCCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVPW--ILSGTIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~~--l~~~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.++||+|+|. +++.|++||+.++. .++++ +.++.++.+++...+. .....||||||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl 146 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRV 146 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 3899999983 67789999998753 23433 3455666666654333 34458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
+||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999998888775 332122 3789999999999985 5999999999999999999988
Q ss_pred Hh
Q 000503 821 AV 822 (1459)
Q Consensus 821 ~~ 822 (1459)
..
T Consensus 226 ~~ 227 (277)
T PRK13652 226 FL 227 (277)
T ss_pred hc
Confidence 54
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=325.39 Aligned_cols=201 Identities=26% Similarity=0.348 Sum_probs=166.1
Q ss_pred CceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1459)
+..++++|+++.|+. +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 9 DTTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred CceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 346899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCCC-CHHHHhccCCC--------C---CHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcH
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFGKN--------Y---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 ---~i~y~~Q~~~l~~~-ti~~nI~~g~~--------~---~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 737 (1459)
.++|++|++-++.+ |++||+.++.. . ++++..+.++.++++..+. ....+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 151 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGG 151 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHH
Confidence 38999999876654 99999987531 1 1234556666666654333 234589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhh-cCCEEEEEeCCeEEEec
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 738 QkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g 815 (1459)
||||++||||+..+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999999999999999999998887775 332112 3789999999999986 59999999999999999
Q ss_pred CHHHHH
Q 000503 816 SSADLA 821 (1459)
Q Consensus 816 ~~~~l~ 821 (1459)
+.+++.
T Consensus 231 ~~~~~~ 236 (265)
T PRK10575 231 TPAELM 236 (265)
T ss_pred CHHHhc
Confidence 988764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=334.05 Aligned_cols=187 Identities=24% Similarity=0.342 Sum_probs=158.7
Q ss_pred cceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------cEEEEcCCCCCCCC-CHHHH
Q 000503 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYVPQVPWILSG-TIRDN 691 (1459)
Q Consensus 625 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~i~y~~Q~~~l~~~-ti~~n 691 (1459)
++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+||++|++.++.. |++||
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 359999999999999999999999999999999999999999999876 38999999998875 99999
Q ss_pred hccCCC---CC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccc
Q 000503 692 ILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764 (1459)
Q Consensus 692 I~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~l 764 (1459)
+.+... .+ .++.+++++.+++.... .....+||||||||++||||++++|++++|||||++|
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 986421 12 23455666776665432 2345689999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHHHhc
Q 000503 765 DAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 765 D~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 156 D~~~~~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999988876 33322347899999999999875 999999999999999999998654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=317.68 Aligned_cols=197 Identities=25% Similarity=0.290 Sum_probs=157.7
Q ss_pred EEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
+.++|++.+|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888888864 4699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EeCCCcCCCccHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000503 1303 VPQSPFLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1459)
Q Consensus 1303 VpQdp~lf~gTIReNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1459)
+..+.|+++|+..... .+.++..+ ...+.++.+|++.........||||||||++||||++++|+++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2234699999864321 12222111 1223333346665555566689999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCeEEEec
Q 000503 1380 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1437 (1459)
Q Consensus 1380 lLDEaTS~lD~~te~~I~~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlVl~~G~IvE~G 1437 (1459)
||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998764 46899999999999875 8999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=320.30 Aligned_cols=197 Identities=28% Similarity=0.425 Sum_probs=161.7
Q ss_pred EEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000503 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1459)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1459)
+++|+++.|+. .++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 2 EVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred EEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 57888998852 2359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCCC-CHHHHhccCCC-CC---HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHH
Q 000503 673 SIAYVPQVPWILSG-TIRDNILFGKN-YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 673 ~i~y~~Q~~~l~~~-ti~~nI~~g~~-~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1459)
.++|++|++.++.. |++||+.++.. .. .+.+.++++..+. ..........+||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred CeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHH
Confidence 38999999998876 99999987532 11 2233344443321 1122345667899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhc-CCEEEEEeCCeEEEecCHHHH
Q 000503 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 820 (1459)
++.+|+++||||||++||+.+.+++.+. +..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRV-IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999988776 332122 37899999999999885 999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.65 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=166.1
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1459)
.++++|+++.|.. .++++|+||+|++||+++|+||||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4788999999853 1359999999999999999999999999999999998763 699998865
Q ss_pred --------cEEEEcCCCCCCCCCHHHHhccCCCC----C----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 --------~i~y~~Q~~~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.++|++|+|.+++.|++||+.++... + +++..++++.+++..++. ...+..+.+|||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 149 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSG 149 (250)
T ss_pred cchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCH
Confidence 38999999999889999999876321 1 123344555555543332 223556779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1459)
|||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQE-LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999888765 433 3457899999999998765 9999999999999999
Q ss_pred CHHHHH
Q 000503 816 SSADLA 821 (1459)
Q Consensus 816 ~~~~l~ 821 (1459)
+.+++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14240 228 DTVDLF 233 (250)
T ss_pred CHHHHH
Confidence 988874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=323.51 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=168.9
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------ 672 (1459)
..++++|+++.|.. . ++|+|+||+|++|++++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS---F---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC---E---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 36899999999853 2 35999999999999999999999999999999999876 4799998765
Q ss_pred ---------cEEEEcCCCCCCCCCHHHHhccCCCC---C---HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcH
Q 000503 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 ---------~i~y~~Q~~~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 737 (1459)
.++|++|++.+++.|++|||.++... . +++..++++.+++..++.. ..+..+.+||||
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 155 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGG 155 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHH
Confidence 38999999999988999999876421 1 2334455666666544431 235567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEe---------
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD--------- 807 (1459)
Q Consensus 738 QkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~--------- 807 (1459)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHE-LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999988775 333 3445899999999998875 99999998
Q ss_pred CCeEEEecCHHHHHh
Q 000503 808 KGQVKWIGSSADLAV 822 (1459)
Q Consensus 808 ~G~i~~~g~~~~l~~ 822 (1459)
+|++++.|+.+++..
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 799999999988853
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=327.26 Aligned_cols=203 Identities=26% Similarity=0.347 Sum_probs=168.0
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|+.... .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKESD---VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCCc---CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 4789999999964211 2369999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCC--CCCCCHHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHH
Q 000503 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1459)
Q Consensus 673 -~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRv 742 (1459)
.++|++|+|. +++.|+.|||.++.. ..+ ++++++++.+++.... ......||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRV 149 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHH
Confidence 3899999984 667899999987521 222 2345566666664322 234568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHHH
Q 000503 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1459)
Q Consensus 743 alARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 821 (1459)
+||||++.+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999988875 332122 278999999999999889999999999999999998875
Q ss_pred h
Q 000503 822 V 822 (1459)
Q Consensus 822 ~ 822 (1459)
.
T Consensus 229 ~ 229 (277)
T PRK13642 229 A 229 (277)
T ss_pred c
Confidence 4
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=311.94 Aligned_cols=177 Identities=27% Similarity=0.383 Sum_probs=146.1
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCC--CChHHHhcccEEEeCCC--cCCCc
Q 000503 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRFAVVPQSP--FLFEG 1312 (1459)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i~~VpQdp--~lf~g 1312 (1459)
..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++++|+||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 459999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCC
Q 000503 1313 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389 (1459)
Q Consensus 1313 TIReNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD 1389 (1459)
|++||+.+.. ..++++..+ .+.+.++.+|++.........||+|||||++|||||+++|+++||||||++||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVER-----RVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999996421 122222211 12233344466555556667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccChhh
Q 000503 1390 AQTASILQNAISSEC-KGMTVITIAHRIST 1418 (1459)
Q Consensus 1390 ~~te~~I~~~I~~~~-~~~TvI~IaHrl~t 1418 (1459)
+++.+.+.+.|++.. +++|||+|||+++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 160 PAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999998764 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=324.66 Aligned_cols=201 Identities=25% Similarity=0.320 Sum_probs=165.4
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|+. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE---H---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 35889999999852 2 359999999999999999999999999999999999999999998765
Q ss_pred ---------------cEEEEcCCCCCCCC-CHHHHhccCC----CCCH----HHHHHHHHHhcchhhHhhccCCCccccc
Q 000503 673 ---------------SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIG 728 (1459)
Q Consensus 673 ---------------~i~y~~Q~~~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig 728 (1459)
.++|++|++.++.. |++||+.++. ..++ ++..+.++..++...+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~ 147 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QG 147 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hh
Confidence 38999999998875 9999997642 1222 2333444444443221 13
Q ss_pred CCCcccCcHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhc-CCEEEEEe
Q 000503 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 807 (1459)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~-~d~i~~l~ 807 (1459)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+. +......++|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 45679999999999999999999999999999999999999988875 33312347899999999999986 99999999
Q ss_pred CCeEEEecCHHHHH
Q 000503 808 KGQVKWIGSSADLA 821 (1459)
Q Consensus 808 ~G~i~~~g~~~~l~ 821 (1459)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.15 Aligned_cols=196 Identities=25% Similarity=0.303 Sum_probs=160.5
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1459)
.++++|+++.|..... ..++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEH--ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCc--ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 5789999999864211 01359999999999999999999999999999999999999999998764
Q ss_pred -----cEEEEcCCCCCCCC-CHHHHhccCC---CCC----HHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHH
Q 000503 673 -----SIAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 -----~i~y~~Q~~~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 739 (1459)
.++|++|+|.++.. |++||+.++. ..+ +++..+.++.+++...+. ....+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~ 152 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQ 152 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHH
Confidence 38999999988875 9999998642 112 234556666766654333 23458999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEe
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814 (1459)
Q Consensus 740 qRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~ 814 (1459)
||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+.+.+..||++++|++|++++.
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999998888776 332112 37899999999999888999999999998753
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=302.21 Aligned_cols=161 Identities=25% Similarity=0.393 Sum_probs=144.0
Q ss_pred EEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--cEEEEcCCCCC
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWI 683 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~~~l 683 (1459)
++++|+++.|+.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++++
T Consensus 1 i~~~~~~~~~~~~-----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDG-----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCC-----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 3578899988532 2359999999999999999999999999999999999999999999987 79999999999
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCCccc
Q 000503 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSA 763 (1459)
Q Consensus 684 ~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~~s~ 763 (1459)
++.|++||+.++ ....||||||||++||||++++|++++|||||++
T Consensus 76 ~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~ 121 (166)
T cd03223 76 PLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA 121 (166)
T ss_pred ccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 989999999864 2358999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhhcCCEEEEEeCC
Q 000503 764 VDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 809 (1459)
Q Consensus 764 lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~~~d~i~~l~~G 809 (1459)
||+.+.+.+.+. +.. . ++|+|++||+.+....||++++|++|
T Consensus 122 LD~~~~~~l~~~-l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 122 LDEESEDRLYQL-LKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred cCHHHHHHHHHH-HHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999988876 332 2 58999999999988789999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=340.55 Aligned_cols=187 Identities=25% Similarity=0.390 Sum_probs=157.5
Q ss_pred ceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------------cEEEEcCCCCCCC-CC
Q 000503 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-GT 687 (1459)
Q Consensus 626 ~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~~~l~~-~t 687 (1459)
+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++|++|++.++. .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 59999999999999999999999999999999999999999998865 4899999999886 59
Q ss_pred HHHHhccCCC---CCH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHHHHHHHHHccCCCEEEEcCC
Q 000503 688 IRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 760 (1459)
Q Consensus 688 i~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe~ 760 (1459)
++|||.++.. ++. ++..++++.++|+.... ....+|||||||||+||||++.+|+++|||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999987632 222 34455666666654333 34458999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000503 761 LSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 761 ~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 823 (1459)
|++||+.+.+.+.+.+..-....++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999998887632211124789999999999876 4999999999999999999988653
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=319.51 Aligned_cols=197 Identities=23% Similarity=0.293 Sum_probs=144.0
Q ss_pred cEEEEEEEEEecCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhccCCCCCceEEECCEeCCCCChHHHhcccE
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.+-+.||+|.|+. ..|.+++++|-|.--.+|+||||+|.|||||+++|.|-++|+.|+..=+ -|-+||
T Consensus 586 vLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 4678999999965 4578999999999999999999999999999999999999999987543 245788
Q ss_pred EEeCCCc--C-CCccHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhh-cCCCCCChhHHHHHHHHHHHccCCC
Q 000503 1302 VVPQSPF--L-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~VpQdp~--l-f~gTIReNLdp~~~~~d~ei~~aL~~~~l~~~i~~lGLdt~v~-e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1459)
..-|..- | -..|--|.|.-.-...-++.+.+|-..| |.+... -.-..||||||-|+++|-.-++.|+
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG---------L~sHAHTikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG---------LASHAHTIKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh---------hhhccceEeeeecCCcchHHHHHHHHhcCCCC
Confidence 8877642 1 1223333332111112233344444443 333211 0123599999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcC-EEEEEeCCeEEEe-cChhH
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHLVEQ-GNPQT 1441 (1459)
Q Consensus 1378 ILlLDEaTS~lD~~te~~I~~~I~~~~~~~TvI~IaHrl~ti~~~D-rIlVl~~G~IvE~-G~p~e 1441 (1459)
||||||||.+||.++-..+-++|+++ +..||+|+|+-..|..-| ..+|+++-.|-|. |..++
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999876 347999999988887643 3556665555443 44433
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.50 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=166.5
Q ss_pred ceEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1459)
..++++|+++.|.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA----SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3588999999986321 2359999999999999999999999999999999999999999999876
Q ss_pred --cEEEEcCCCC--CCCCCHHHHhccCCC---CCHH----HHHHHHHHhcchhhHhhccCCCcccccCCCcccCcHHHHH
Q 000503 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 --~i~y~~Q~~~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 741 (1459)
.++|++|+|+ +++.|+++|+.++.. .+.+ +..++++..++... ......+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 150 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQR 150 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHH
Confidence 3899999996 445699999988632 2222 23344454444322 224567899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEcCCcchhhcCCEEEEEeCCeEEEecCHHHH
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1459)
Q Consensus 742 valARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~i~vth~~~~l~~~d~i~~l~~G~i~~~g~~~~l 820 (1459)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 333122 37899999999999888999999999999999999887
Q ss_pred Hh
Q 000503 821 AV 822 (1459)
Q Consensus 821 ~~ 822 (1459)
..
T Consensus 230 ~~ 231 (269)
T PRK13648 230 FD 231 (269)
T ss_pred hc
Confidence 54
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.35 Aligned_cols=202 Identities=26% Similarity=0.349 Sum_probs=164.8
Q ss_pred eEEEEcceEeccCCCccccccceeeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1459)
.++++|+++.|.. .++++|+||++++|++++|+||||||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 4788999998853 2359999999999999999999999999999999999974 799998875
Q ss_pred ------cEEEEcCCCCCC-CCCHHHHhccCCCC-----CH----HHHHHHHHHhcchhhHhhccCCCcccccCCCcccCc
Q 000503 673 ------SIAYVPQVPWIL-SGTIRDNILFGKNY-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1459)
Q Consensus 673 ------~i~y~~Q~~~l~-~~ti~~nI~~g~~~-----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 736 (1459)
.|||++|+|.++ +.|++||+.++... +. ++..++++.+++...+. ........+|||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 149 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSG 149 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCH
Confidence 489999999755 57999999875321 11 23345555555543221 123455679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEcCCcchhh-cCCEEEEEeCCeEEEec
Q 000503 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 737 GQkqRvalARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~i~vth~~~~l~-~~d~i~~l~~G~i~~~g 815 (1459)
||||||+||||+.++|++++|||||++||+.+.+++.+. +.. +.+++|+|++||+++.+. .||+|++|++|++.+.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL-FLE-LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999988876 333 345789999999999986 59999999999999999
Q ss_pred CHHHHH
Q 000503 816 SSADLA 821 (1459)
Q Consensus 816 ~~~~l~ 821 (1459)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14247 228 PTREVF 233 (250)
T ss_pred CHHHHH
Confidence 988874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1459 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-41 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-20 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-41 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-39 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-33 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-38 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-37 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-37 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-36 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-36 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-36 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-36 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-35 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-35 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-34 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-34 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-34 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-34 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-32 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-32 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-31 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-30 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-13 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-30 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-11 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-11 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-28 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-12 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-28 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-28 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-28 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-28 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-27 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-23 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-22 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-22 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-22 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-14 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 9e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 349 bits (896), Expect = e-109
Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 3/246 (1%)
Query: 1214 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1273
WP G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL
Sbjct: 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
Query: 1274 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1333
G+I +DG++ + + R F V+PQ F+F G+ R NLDP + D +IW V
Sbjct: 71 LNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
++ ++ +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1451
T I++ + TVI RI +L D+ L+++ + + + L F
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249
Query: 1452 SFVRAS 1457
+ S
Sbjct: 250 AGFIGS 255
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 7e-26
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
E N +L +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSITL 89
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYS-----ETLKACTLDVDISLMVG 721
+ +PQ +I SGT R N+ DP ++S + L I G
Sbjct: 90 EQWRKAFGVIPQKVFIFSGTFRKNL------DPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ + G LS G + + LAR+V + I +LD+ + +D + I +
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR--TLKQA 201
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFDTS 837
T ILC ++A+ D +V+++ +V+ S +L A +GF + + +
Sbjct: 202 FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN-- 259
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 894
+ + T ++ + + V + +++++ + + L + +
Sbjct: 260 -FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDV-----QVGANMSLGIRPEHLL 310
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-105
Identities = 218/1156 (18%), Positives = 448/1156 (38%), Gaps = 145/1156 (12%)
Query: 374 SDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI------ 427
GE+ T ++ D + ++ +IG+ + F G I
Sbjct: 163 DVGELNTRLTDDV-------SKINEGIG--DKIGMFFQAM-----ATFFGGFIIGFTRGW 208
Query: 428 -----TILLIPVNKWIANLIANATEKMMKQKDERIRRTG----EILTHIRTLKMYGWEQI 478
+ + PV A + A ++ + G E+L IRT+ +G ++
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 479 ----FSSWLMKTRSSEVKHLSTRKYLDA--WCVFFWATTPTLFSL-FTFGLFALMGHQLD 531
+++ L + + +K T + + + + ++L F +G ++ +
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS-----YALAFWYGTSLVISKEYS 323
Query: 532 AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSY 591
V T + I +A + + + + + + + +S S
Sbjct: 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII-------DNKPSIDSFSK 376
Query: 592 ISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651
+ N + ++ S Y + +E Q +L ++L + G VA++G G GKS
Sbjct: 377 SGHKPDNIQGN---LEFKNIHFS-YPSRKEVQ--ILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 652 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY 698
+ + + G + G I V Q P + + TI +NI +G+
Sbjct: 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-- 488
Query: 699 DPQSYSETLKACTL-DVD--ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
+ + E KA + I + +GE+G LSGGQ+ R+A+ARA+ I
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 756 MLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
+LD+ SA+D + + L A G +T I+ H + + AD++ D G +
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREG-----RTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 813 WIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD-- 868
G+ +L +Y T + + + ++ N + ++ +
Sbjct: 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRS 663
Query: 869 ---------DAQEIIEVEQRKEGRVELTVYKNYAKFSG--WFITLVICLSAILMQASRNG 917
D + ++ + V + K + W +V AI+ +
Sbjct: 664 TRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPA 723
Query: 918 NDLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 973
+ S V + +++ + ++ I + + ++ F+F +
Sbjct: 724 FSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 974 VHNTLLTKIVNAPVLFFDQ---TPGGRILNRFSSDL----YMIDDSLPFILNILLANFVG 1026
+ + ++ V +FD T G + R ++D L I + AN
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTG-ALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGT 841
Query: 1027 LLGIAVV----LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFT 1082
+ I+++ L+ + + + ++ + K+ + + L+ + S A+
Sbjct: 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM-----LSGQALKDKKELEGSGKIAT-- 894
Query: 1083 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY-SELTASLWLSLRLQLLAAFIISFIA 1141
E + T+ + E F + + + + R + + S + + +
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF------TQAMMYFS 948
Query: 1142 TMAVI---GSR--GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1196
A G+ TF LV A+ + A V + +F + K VS +
Sbjct: 949 -YAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA---KATVSASHI 1004
Query: 1197 LEYMD-VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQV 1253
+ ++ P+ + Q L P+ +G ++F V Y P+ P L ++ ++ G +
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPN-MLEGNVQFSGVVFNY-PTRPSIPVLQGLSLEVKKGQTL 1062
Query: 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS 1313
+VG +G GKS+++ L R G + +DG I V+ LR + +V Q P LF+ S
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 1314 LRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICL 1368
+ +N+ D + +I ++ ++ + ++++ T V + G S GQ+Q I +
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1428
ARAL++ +L LDE T+ +D ++ ++Q A+ +G T I IAHR+ST+ N D I+++
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
Query: 1429 DHGHLVEQGNPQTLLQ 1444
+G + E G Q LL
Sbjct: 1243 QNGKVKEHGTHQQLLA 1258
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 9e-68
Identities = 124/552 (22%), Positives = 229/552 (41%), Gaps = 72/552 (13%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 998
++Y + + +++ + + + R K+ I+N + +FD G +
Sbjct: 111 AYYYTGIGAGVLIVAYI---QVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGEL 167
Query: 999 LNRFSSDLYMIDDSLPFILNILLAN---FVGLLGIAVVLSY----VQVFFLLLLVPFWFI 1051
R + D+ I++ + + + F G I + V + +L I
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
++K T +E L + +++ A E L T+ AF + + ++ ++
Sbjct: 228 WAK--ILSSFTDKE---LHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEA 280
Query: 1112 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSR---------GNLPATFSTPGLV 1162
+R + ++ ++ + I + A G+ G + F + +
Sbjct: 281 KRLG---IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG 337
Query: 1163 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLSPDWPFQG 1221
++ A+P + +F + V + +D P + PD QG
Sbjct: 338 AFSVGQASP-------NIEAFANA---RGAAYEVFKIIDNKPSIDSFSKSGHKPD-NIQG 386
Query: 1222 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+EF+N+ Y PS L +N ++ G V +VG +G GKS+ + + RL G
Sbjct: 387 NLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+ +DG +I VR LR VV Q P LF ++ +N+ + +D+
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR--YGREDVT----------M 493
Query: 1340 EEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+E+E +T V E G S GQ+Q I +ARAL+++ K+L LDE
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
T+ +D ++ +++Q A+ +G T I IAHR+STV N D I D G +VEQGN L++
Sbjct: 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613
Query: 1445 DECSVFSSFVRA 1456
E ++ V
Sbjct: 614 -EKGIYFKLVMT 624
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 4e-30
Identities = 109/536 (20%), Positives = 198/536 (36%), Gaps = 71/536 (13%)
Query: 320 VLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM-TIIYQKCLYVRLAERSEFSDGEI 378
+L I +T L+ F + L+K +LR + +++ Q + + + + G +
Sbjct: 757 ILGIISFITFFLQGFTFGKAGEILTK---RLRYMVFKSMLRQDVSWF---DDPKNTTGAL 810
Query: 379 QTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-----LYTQVKFAFVSGLAITILLIP 433
T ++ D + + ++ FQ L L + + LAI ++
Sbjct: 811 TTRLANDAA---QVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL-LLAIVPIIAI 866
Query: 434 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKH 493
+++ K K+ + + E + + RT+ EQ F + +
Sbjct: 867 AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET-MYAQSLQIPYR 925
Query: 494 LSTRKYLDAWCVFFWATTPTLFS---LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 550
+ +K F + FS F FG + + + V + +
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 551 SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 610
A +S + R +E+ SY + GL + V
Sbjct: 986 QVSSFAPDYAKATVSASHIIRI---------IEKTPEIDSYSTQGLKPNMLEG-NVQFSG 1035
Query: 611 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML------T 664
+ Y VL +SL + KG +A++G G GKS+++ +L
Sbjct: 1036 VVFN-YPTRPSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQ------LLERFYDPM 1086
Query: 665 HGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
GS+ G + V Q P + +I +NI +G N SY E ++A
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 712 L----DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
I + +G+KG LSGGQ+ R+A+ARA+ I +LD+ SA+D +
Sbjct: 1147 EANIHQF-IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 768 VARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + L A +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1206 SEKVVQEALDKA-----REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 1e-96
Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+ V+M++ T W EE VL ++ + +G L+AV G G+GK+SLL I+G
Sbjct: 1 SLTTTEVVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 660 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
E+ + G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
D +GE G+ LSGGQRAR++LARAVY +D+Y+LD +D + I + +
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 177 -LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 6e-43
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 23/243 (9%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ +NVT ++ L DINF IE G + + G TGAGK+S+L + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1336
+I GR + Q ++ G++++N+ + D+ + SV++ C
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSY---DEYRYRSVIKAC 107
Query: 1337 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
++E++ A + E GI+ S GQR I LARA+ K + + LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1395 -ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1453
I ++ + T I + ++ + D+ILIL G G L + FSS
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ-PDFSSK 226
Query: 1454 VRA 1456
+
Sbjct: 227 LMG 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 2e-96
Identities = 96/217 (44%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664
++ +++AT +W LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM
Sbjct: 3 SITVRNATFTW----ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 665 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
G + GS+AYVPQ WI + ++R+NILFG + Y ++AC L D+ ++ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGEKGVNLSGGQ+ R++LARAVY +DIY+ DD LSAVDA V + I N I ML+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 785 -KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
KTRIL TH++ + D+++VM G++ +GS +L
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 25/244 (10%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
I +N T + S P L+ I F+I G V +VG+ G GKSS+L+AL G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1337
+ + +G A VPQ ++ SLR+N+ ++ SV++ C
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACA 105
Query: 1338 VKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS- 1394
+ ++E G T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1395 ILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452
I +N I + K T I + H +S + +D I+++ G + E G+ Q LL + F+
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAE 224
Query: 1453 FVRA 1456
F+R
Sbjct: 225 FLRT 228
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 3e-93
Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 24/307 (7%)
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 623
+ + +T F E EL + A N+ + D + S+ N
Sbjct: 5 VVMENVTAFW--EEGFGELFEKAKQ-----------NNNNRKTSNGDDSLSF-SNFSLLG 50
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683
VL ++ + +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743
+ GTI++NI+ G +YD Y +KAC L+ DIS D +GE G+ LSGGQRAR++
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMV 803
LARAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKI 228
Query: 804 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDV 863
+++ +G + G+ ++L +F +S M ++ IL +
Sbjct: 229 LILHEGSSYFYGTFSELQN-------LRPDF-SSKLMGCDSFDQFSAERRNSILTETLHR 280
Query: 864 VSVSDDA 870
S+ DA
Sbjct: 281 FSLEGDA 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-43
Identities = 68/276 (24%), Positives = 114/276 (41%), Gaps = 30/276 (10%)
Query: 1190 MVSLERVLEYMDVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1245
V +E V + + EL + + F N ++ P L DINF
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINF 59
Query: 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305
IE G + + G TGAGK+S+L + G+I GR + Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQ 106
Query: 1306 SPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVG 1361
+ ++ G++++N+ + D+ + SV++ C ++E++ A + E GI+ S G
Sbjct: 107 NSWIMPGTIKENIIGVSY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVL 1420
QR I LARA+ K + + LD +D T I ++ + T I + ++ +
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 1421 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1456
D+ILIL G G L FSS +
Sbjct: 224 KADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMG 258
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 3e-87
Identities = 127/567 (22%), Positives = 253/567 (44%), Gaps = 32/567 (5%)
Query: 892 YAK-FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCM 950
F I I L IL AS L +D + + +V+ +
Sbjct: 19 TIAPFKAGLIVAGIAL--ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 951 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMID 1010
+ + ++ ++ S + + + L ++ PV FFD+ G +L+R + D +
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136
Query: 1011 DSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYSKLQFFYRST 1062
S L ++ ++G+ +++ Y L++L P + + + ++
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
+ ++ + + + L G + F ++ +F + + ++AS
Sbjct: 197 QNTMGQVTTSA--------EQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
+QL+A+ ++F+ S ++ + + + + S ++ L + +
Sbjct: 249 SISDPIIQLIASLALAFVL---YAASFPSVMDSLTAGTITVV-FSSMIALMRPLKSLTNV 304
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1242
+ ++ M + + + +D QE+ G + + G +EF+NVT Y AL +
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR---ATGDLEFRNVTFTYPGREVPALRN 361
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302
IN I G V +VGR+G+GKS+I + + R I G IL+DG ++ + LR + A+
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 1303 VPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1357
V Q+ LF ++ +N+ + + +I + + + + GL+T + E+G+
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S GQRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 1418 TVLNMDEILILDHGHLVEQGNPQTLLQ 1444
T+ DEI++++ G +VE+G LL
Sbjct: 541 TIEQADEIVVVEDGIIVERGTHSELLA 567
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 9e-34
Identities = 114/586 (19%), Positives = 221/586 (37%), Gaps = 79/586 (13%)
Query: 276 AYGYPY----ICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTS 329
P+ I G+ ++N + LL L+ F + L + + +
Sbjct: 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPLVVIGLM 75
Query: 330 ILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRT 389
IL+ S+ +S + K+ ++ ++ + + +A + S G + + ++ D++
Sbjct: 76 ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE-- 133
Query: 390 VNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
+A+S A + IG+ + + Y + + I ++L P+ +++
Sbjct: 134 -QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI-----ILVVLAPIVSIAIRVVSK 187
Query: 445 ATEKMMKQKDERI----RRTGEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLST 496
+ K + ++L + + ++G +++ F K R +K +S
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
D + + F + L A + + +L+ PL S V
Sbjct: 248 SSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NFNSKDMAVIMQDAT 612
+ + L L + + E ++ + L F
Sbjct: 306 AQFQRGMAACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFT------------ 350
Query: 613 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
Y E L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 351 ---YPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 673 -------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDIS 717
+A V Q + + T+ +NI + + Y + E + I+
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LS 774
M G IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I L
Sbjct: 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 775 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T ++ H + I AD +VV++ G + G+ ++L
Sbjct: 525 EL-----QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 1e-85
Identities = 118/519 (22%), Positives = 234/519 (45%), Gaps = 36/519 (6%)
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
++L + ++ ++ S +++ L ++ PV FFDQ G +L+R
Sbjct: 69 FMILGLM-FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYS 1053
+ D + + L ++ ++G+ ++ + L+++ P F+
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 1054 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
+ + R+ + + S + + L G + ++ ++ +F + ++
Sbjct: 188 RFRKISRNMQTAMGHVTSSA--------EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 1114 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV---GLALSYAA 1170
+ ++A +Q++A+ + + + S ++ A +
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVL---FLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 1171 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1230
P+ +L + S F M + + + MD+ E G G ++ ++VT
Sbjct: 297 PLKAL-TSVTSEFQRG---MAACQTLFGLMDLETERDNGKYEAER---VNGEVDVKDVTF 349
Query: 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290
Y+ AL ++F+I G V +VGR+G+GKS+I N R + G I +DG ++ +
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 1291 TPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV-- 1345
+ +LR FA+V Q+ LF ++ +N+ + +I + H E +E +
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE-QIEQAARQAHAMEFIENMPQ 468
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
GL+T + E+G S S GQRQ + +ARALL+ + VL LDE T+ +D ++ +Q A+ K
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 1406 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
TV+ IAHR+ST+ DEIL++D G ++E+G LL
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 107/557 (19%), Positives = 209/557 (37%), Gaps = 67/557 (12%)
Query: 297 AGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSI 354
LL L+ F S L +L + ++ S+ LS + + +
Sbjct: 43 YMISLLKPLLDEGFGNAESNFL--RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQM 100
Query: 355 MTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQ-----IGVA 409
++ +++ + + S G + + ++ D++ +A + A + IG+
Sbjct: 101 RRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE---QVAGATSRALVSIVREGASIIGLL 157
Query: 410 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRTGEILT 465
+ + + + + I++ PV + + ++ K+ + + ++L
Sbjct: 158 TLMFWNSWQLSL-----VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLK 212
Query: 466 HIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFG 521
+ + YG +++ F R +K +S + D + +
Sbjct: 213 GHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA--VLFLA 270
Query: 522 LFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581
+ +L + L+ PL + V + + + L +
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM-------- 322
Query: 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVA 641
+ + NG + V ++D T + Y E+ L+ VS +P+G VA
Sbjct: 323 -----DLETERDNGKYEAERVNGEVDVKDVTFT-YQGKEKP---ALSHVSFSIPQGKTVA 373
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTI 688
++G GSGKS++ N + GSI G A V Q + + TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 689 RDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746
+NI + Y + + + I M G IGE G +LSGGQR R+A+AR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 747 AVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMV 803
A+ + + +LD+ SA+D + R I L KT ++ H + I AD +
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL-----QKNKTVLVIAHRLSTIEQADEI 548
Query: 804 VVMDKGQVKWIGSSADL 820
+V+D+G++ G ADL
Sbjct: 549 LVVDEGEIIERGRHADL 565
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 1e-82
Identities = 114/533 (21%), Positives = 233/533 (43%), Gaps = 32/533 (6%)
Query: 927 DTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986
T + + T + L IF + + +R + + S + + L +
Sbjct: 49 ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108
Query: 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLL 1043
F+ G++++R +D+ D + L + + + ++ ++ ++ V L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103
+ PF+ + + + R+L R S + + + E + G S +++F ED
Sbjct: 169 FIFPFYILTV---YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225
Query: 1104 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVG 1163
F + + + + + + + + +G+ + + + L
Sbjct: 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVI---GVGAYLAISGSITVGTLAA 282
Query: 1164 ---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWP 1218
P+ L ++ T++ S++RV + +D + G Q +
Sbjct: 283 FVGYLELLFGPLRRL-VASFTTLTQS---FASMDRVFQLIDEDYDIKNGVGAQPIEI--- 335
Query: 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R +
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN-----LDPFHMNDDLKIWSVL 1333
GQIL+DG NI + LR + +V Q LF ++++N D ++
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAA 451
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+VE G + L+
Sbjct: 512 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-27
Identities = 103/568 (18%), Positives = 203/568 (35%), Gaps = 75/568 (13%)
Query: 294 IGFAGPLLLNKLIKFLQQGSGHLDGYV-------LAIALGLTSILKSFFDTQYSFHLSKL 346
I PLL+ I + + IAL + I++ + +
Sbjct: 29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT 88
Query: 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQ 405
K+ I +Y + + G++ + + D ++T + + W
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT 148
Query: 406 -IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRT 460
I + + VK + + P + K+ +++ + +
Sbjct: 149 IIIALSIMFFLDVKLTL-----AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFL 203
Query: 461 GEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516
E + I +K + E F + +KH Y A P +
Sbjct: 204 HERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII-- 261
Query: 517 LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576
+ G + + + + + L PL L +F S+ R+ + +
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI--- 318
Query: 577 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPK 636
+ ++++ + + + + + + Y + + +L ++L + K
Sbjct: 319 DEDYDIKNGVGAQP-----IEIKQGR---IDIDHVSFQ-Y---NDNEAPILKDINLSIEK 366
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASG-------------SIAYVPQ 679
G VA +G G GKS+L+N I +T G I G I V Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLI----PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 680 VPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLS 735
+ S T+++NIL G+ P + E ++A + I + G +GE+GV LS
Sbjct: 423 DNILFSDTVKENILLGR---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTH 792
GGQ+ RL++AR + I +LD+ SA+D + I L +T ++ H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-----RTTLIVAH 534
Query: 793 NVQAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ AD +VV++ G + G+ +L
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHREL 562
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 9e-71
Identities = 141/547 (25%), Positives = 237/547 (43%), Gaps = 90/547 (16%)
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
Y+++L S L ++ S ++ L K+ PV FFD+TP G I++
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIY 1052
R +D+ I++ L + + V L G +++ V V L +VP +
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 1053 SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1112
S+ + ++ R L +L+ + E ++G + I+ F E+ M KF +
Sbjct: 199 SQTRKYFYENQRVLGQLNGI--------IEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 1113 RTSYSELTASLWLSLRLQLLAAFI---ISFI-----ATMAVIGS----RGNLPATFSTPG 1160
+ + Q+ + + ++ + A ++ G + + T G
Sbjct: 251 KVGT-----------KAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDII-----TVG 294
Query: 1161 LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220
+ + Y+ L + F + + S ER+ E +D+ +E+ +
Sbjct: 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELR--EVR 352
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV Y P L DI F I+ G +V +VG TG+GK++I+N L R + GQ
Sbjct: 353 GEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMNDDLKIWSV 1332
ILVDG++I LR +V Q LF ++++NL D
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD------------- 458
Query: 1333 LEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSK 1377
EE++ G ET + ++G S GQRQL+ + RA L + K
Sbjct: 459 -------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511
Query: 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1437
+L LDE T+NVD +T +Q A+ +G T I IAHR++T+ N D I++L G +VE G
Sbjct: 512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571
Query: 1438 NPQTLLQ 1444
L+Q
Sbjct: 572 KHDELIQ 578
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 4e-14
Identities = 118/599 (19%), Positives = 213/599 (35%), Gaps = 130/599 (21%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ + I + + V+ +G P L+ K I L + I + L S
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD---------------GEIQT 380
+ L+ IM + Q ++ RL R E + G+I +
Sbjct: 94 --FW----------LQGKIMLTLSQDVVF-RL--RKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 381 FMSVDTDRTVNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVN 435
+ D D N+ N ++ F G + + V + +T+ ++P+
Sbjct: 139 RVINDVD---NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL-----VTLSIVPLT 190
Query: 436 KWIANLIANATEKM-MKQKDERIRRTG---EILTHIRTLKMYGWEQIFSSWLMKTRSSEV 491
I ++++ T K + + + G E ++ + +K++ E+ + E
Sbjct: 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE---------KEMEK 241
Query: 492 KHLSTRKYLDAWC--VFFWATTP---TLFSLFTFGLFALMGHQLDAAMVFT--CLALF-- 542
F P + + F L + G L + T +A F
Sbjct: 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 543 --NSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFN 600
PLN N + A S R+ L + + E + G
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELREVRG----- 353
Query: 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660
+ ++ S Y +++ VL ++ + G VA++G GSGK++++N +
Sbjct: 354 ----EIEFKNVWFS-Y----DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL--- 401
Query: 661 MM----LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQ-S 702
M + G I G SI V Q + S T+++N+ +G P +
Sbjct: 402 -MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN---PGAT 457
Query: 703 YSETLKACTL-DVD--ISLMVGG-DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
E +A L D I + G + + + G +LS GQR LA+ RA I +LD
Sbjct: 458 DEEIKEAAKLTHSDHFIKHLPEGYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 759 DVLSAVDA------QVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
+ S VD Q A M M KT I+ H + I AD+++V+ G++
Sbjct: 517 EATSNVDTKTEKSIQAA--------MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-65
Identities = 117/433 (27%), Positives = 208/433 (48%), Gaps = 32/433 (7%)
Query: 1028 LGIAVVLSYVQVFFL-LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLN 1086
+ I V LS V +F + +++ F ++ K +R ++ V R E L
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLL 210
Query: 1087 GSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1146
G +RAF+ E+Y F++ +R+ ++A + L L I + +AV+
Sbjct: 211 GVRVVRAFRREEYENENFRKANESLRRSI---ISAFSLIVFALPLF--IFIVNMGMIAVL 265
Query: 1147 --GSRGNLPATFSTPGLVGLALSYAAPI---VSLLGNFLSSFTETEKEMVSLERVLEYMD 1201
G ++ +Y I + ++GN L+ + S +RVLE ++
Sbjct: 266 WFGGVLVRNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIV---RASASAKRVLEVLN 321
Query: 1202 VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGA 1261
+L+ +G + F+NV RY + L +NF+++ G+ V ++G TG+
Sbjct: 322 EKPAIEEADNALALP-NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 1262 GKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--- 1318
GKS+++N + RL G++ VD L++ ++DLRG + VPQ LF G++++NL
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 1319 DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1376
DD +I + + + + ++ G ++ V+ G +FS GQ+Q + +ARAL+K
Sbjct: 441 RE-DATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1436
KVL LD+CT++VD T + + + KG T I +I T L D+IL+L G +
Sbjct: 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF 558
Query: 1437 GNPQTLLQDECSV 1449
G + LL+ C
Sbjct: 559 GTHKELLEH-CKP 570
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 7e-31
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
Y N + VL+ V+ + GSLVAV+GE GSGKS+L+N I + G +
Sbjct: 351 YFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLK-----ACTLDVDIS 717
I+ VPQ + SGTI++N+ +G+ + + + A D I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR---EDATDDEIVEAAKIAQIHDF-II 463
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
+ G + + G N SGGQ+ RL++ARA+ + +LDD S+VD + IL
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG-- 521
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + T + T + AD ++V+ +G+V G+ +L
Sbjct: 522 LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 1e-64
Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 33/255 (12%)
Query: 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1335
GQ+L+DG ++ LR + VV Q L S+ DN+ +P M+
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSV---------- 112
Query: 1336 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380
E+V G T V E G S GQRQ I +ARAL+ + K+L
Sbjct: 113 ----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1440
DE T+ +D ++ ++ + CKG TVI IAHR+STV N D I++++ G +VEQG +
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228
Query: 1441 TLLQDECSVFSSFVR 1455
LL + S++S +
Sbjct: 229 ELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGD 723
+ V Q +L+ +I DNI S + + A L IS + G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICK 193
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T I+ H + + AD ++VM+KG++ G +L
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 3e-64
Identities = 84/275 (30%), Positives = 137/275 (49%), Gaps = 11/275 (4%)
Query: 1176 LGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWPFQGLIEFQNVTMRYK 1233
+ + +E + + + E +L G L +G IEF+NV Y
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQ---KGRIEFENVHFSYA 64
Query: 1234 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293
L D++FT+ G + +VG +GAGKS+IL LFR I G I +DG +I
Sbjct: 65 DGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1294 RDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVKEEVEAV--GLET 1349
LR VVPQ LF ++ DN+ +D ++ + + + + + A G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1409
V E G+ S G++Q + +AR +LK+ ++ LDE T+ +D +Q +++ C T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 1410 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
I +AHR+STV+N D+IL++ G +VE+G + LL
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 40/305 (13%)
Query: 545 LISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSNFNSKD 603
+ ++ FI + + L + + E++ + G F +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
+ Y + L VS + G +A++G G+GKS++L + +
Sbjct: 61 FS----------Y----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC 710
+ G I G I VPQ + + TI DNI +G+ E A
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAA 164
Query: 711 ---TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+ I G +GE+G+ LSGG++ R+A+AR + I +LD+ SA+D
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 768 VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLY 825
R I ++ + +T I+ H + + AD ++V+ G + G L +Y
Sbjct: 225 NERAIQAS--LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282
Query: 826 SGFWS 830
+ W
Sbjct: 283 ADMWQ 287
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 2e-62
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ ++V Y L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHV 1338
+DG I N + + R + V Q + G++R+NL D+ +W VL+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE-DLWQVLDLAFA 118
Query: 1339 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
+ VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1397 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
Q A+ S KG T + IAHR+ST+++ D+I ++ G + G L+
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMML--------TH 665
++ +L +S S++A G G GKS++ + + GE+ + +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGG 722
+ + I +V Q I++GTIR+N+ +G D + + + L + M
Sbjct: 72 ENWRSQ--IGFVSQDSAIMAGTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQ 128
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMG 779
+GE+GV +SGGQR RLA+ARA I MLD+ +++D++ + L +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--- 185
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS--LYSGFWS 830
M +T ++ H + I AD + ++KGQ+ G +L + LY+ + S
Sbjct: 186 --MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 9e-57
Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%)
Query: 1219 FQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276
F IEF +V Y + + L INF I GT +VG TG+GKS+I L+R
Sbjct: 14 FGVNIEFSDVNFSYPKQTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEK 1335
G I + G N+ +R +VPQ LF +++ N+ ++ D ++ +
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 1336 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+ + +EA+ +T V G+ S G+RQ I +AR LLK K++ DE T+++D++T
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
+ Q A+ K T+I IAHR+ST+ + + I++L+ G +VE+G + LL+
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL------GEMM--------LT 664
++ + L ++ +P G+ A++G GSGKS++ + G++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 665 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC---TLDVDISLMVG 721
SI + I VPQ + + TI+ NIL+GK + E +KA L I +
Sbjct: 88 RNSIRSI--IGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPK 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+G KG+ LSGG+R R+A+AR + I + D+ S++D++ +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA--VEDL 201
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
+T I+ H + IS+A+ +++++KG++ G+ DL Y+ W+
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-54
Identities = 80/258 (31%), Positives = 119/258 (46%), Gaps = 32/258 (12%)
Query: 1218 PFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275
+GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++ L L
Sbjct: 12 NMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1276 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
GG++L+DG ++ L + A V Q P LF S R+N I L +
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------IAYGLTR 119
Query: 1336 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380
EE+ AV G +T V E+G S GQRQ + LARAL++ ++L
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1381 LDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1438
LD T+ +DA +Q + S E TV+ I ++S IL L G + EQG
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1439 PQTLLQDECSVFSSFVRA 1456
L++ + S V A
Sbjct: 240 HLQLMERG-GCYRSMVEA 256
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 33/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMM--------LTHGSIHA 670
VL ++ L G + A++G GSGKS++ + G+++ H +H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH- 92
Query: 671 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYI 727
+A V Q P + + R+NI +G P + E IS G +
Sbjct: 93 -TQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA------QVARWILSNAIMGPH 781
GE G LSGGQR +ALARA+ + +LD+ SA+DA Q L + P
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYES---PE 204
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T +L T + A ++ + +G V G+ L
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 34/240 (14%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I+ +NV + K +L +IN + G V I+G G+GK+++L A+ L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLLP-YSG 58
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD------LKIWS 1331
I ++G+ + R +R P + + D LK
Sbjct: 59 NIFINGMEV-----RKIRNYIRYSTNLPEAY---------EIGVTVNDIVYLYEELKGLD 104
Query: 1332 VLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ E ++A+ L E ++ S GQ L+ + AL +++ LDE NVDA
Sbjct: 105 ---RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ-GNPQTLLQDECS 1448
++ I G I + H + + + G+ ++ + LL+
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIV 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
+ + + L ++L + G V ++G GSGK++LL +I G ++ G+I +G
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 724
I Y +P + + T+ D + K D + E LK +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK----------ALKLGE 119
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+ K LS GQ + + A+ +I LD+ VDA R ++S I
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-RHVISRYI---KEYG 175
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKG 809
K IL TH + + G
Sbjct: 176 KEGILVTHELDMLNLYKEYKAYFLVG 201
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-31
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
+++ + + Y A L IN I+ G I+G G GKS++ N + + +
Sbjct: 7 ILKVEELNYNYSDGTHA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---S 62
Query: 1279 GQILVDGLNIINTP--VRDLRGRFAVVPQSPF--LFEGSLRDNLD----PFHMNDDLKIW 1330
G+IL D I + + LR +V Q P LF S+ D +N L
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ--DVSFGA--VNMKLPED 118
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ ++ V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D
Sbjct: 119 EIRKR--VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 1391 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
S + + + G+T+I H I V D + ++ G ++ QGNP+ + ++
Sbjct: 177 MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-14
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 28/221 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ 679
+ L +++ + +G + A++G G GKS+L + G + + G I I Y +
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 680 VPW----------------ILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISL-MVG 721
+ S ++ ++ FG N E K VD +L G
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKR----VDNALKRTG 132
Query: 722 GDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ ++ +K LS GQ+ R+A+A + + +LD+ + +D I+ +
Sbjct: 133 --IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
L T I+ TH++ D V VM +G+V G+ ++
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-31
Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 23/241 (9%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
LI+ + K L I++ I G + + G GAGK+++LN L P G
Sbjct: 21 LIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 1280 QILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-----NDDLKIWSV 1332
+ + G + +R V S ++ + + ++
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 1333 L---EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ + + ++ VG+ ++ S G++Q + +ARAL+ +VL LDE A +D
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 1390 AQT-ASILQ--NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1445
S+L +++S + +I + H I + +IL+L G ++QG + +L
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
Query: 1446 E 1446
E
Sbjct: 254 E 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 46/248 (18%)
Query: 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662
M + + + +L ++S + KG + G G+GK++LLN +
Sbjct: 19 HMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
Query: 663 LTHGSIHASG---------------SIAYVPQ---VPWILSGTIRDNILFGKN-----YD 699
T G+++ G I +V + + D ++ G Y
Sbjct: 73 ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ 132
Query: 700 PQSYSETLKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757
+A L V +S A + LS G++ R+ +ARA+ + +L
Sbjct: 133 DIDDEIRNEAHQLLKLVGMS-------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185
Query: 758 DDVLSAVDAQVARWILSN----AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVK 812
D+ + +D +LS + P + I TH ++ + ++++ GQ
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTL---AMIYVTHFIEEITANFSKILLLKDGQSI 242
Query: 813 WIGSSADL 820
G+ D+
Sbjct: 243 QQGAVEDI 250
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-30
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 35/242 (14%)
Query: 1223 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
IE NV+ + P AL +++ I G + + G TG+GKS++ + L + P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP- 59
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRD-------NLDPFHMNDDL 1327
G +L DG ++R + Q P F + D N P
Sbjct: 60 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------- 109
Query: 1328 KIWSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 110 ---DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1386 ANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1443
+D + + L + + G TVI I+H I TV+N D +++L+ G V G L
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Query: 1444 QD 1445
+
Sbjct: 227 EK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M + + + + + + L VSL + +G + V G GSGKS+LL + G +
Sbjct: 1 MRIEVVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 664 THGSIHASG----------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKAC 710
T G + G +I Q P + + D + F KN+ P + +
Sbjct: 60 TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPL- 116
Query: 711 TLDVDISL-MVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V ++ VG D ++ LSGG++ R+A+A + H DI +LD+ L +D +
Sbjct: 117 ---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 769 ARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+L + L KT IL +H++ I+ D VVV++KG+ + G+ +
Sbjct: 174 KTDLL-RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 28/235 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +++ R L I+F IE G G++G GAGK++ L + L G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCH 1337
V G N++ P ++R + +P+ + + L + +
Sbjct: 74 VFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------EEM 126
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V+ E GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A ++
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 1398 NAISSECK-GMTVITIAHRISTVLNMDE-------ILILDHGHLVEQGNPQTLLQ 1444
+ + G+T++ +H NM E I ++ +G +VE G + L +
Sbjct: 187 KILKQASQEGLTILVSSH------NMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 41/221 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 673 SIAYVPQVP---WILSGTIRDNILF-GKNYD------PQSYSETLKACTLDVDISLMVGG 722
I+Y+P+ + G + + F Y + + L
Sbjct: 89 LISYLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIAGLG--------- 137
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
I ++ S G +L +ARA+ + +LD+ S +D AR + +
Sbjct: 138 --EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQ 194
Query: 783 LQKTRILCTHN---VQAISAADMVVVMDKGQVKWIGSSADL 820
T ++ +HN V+ + D + ++ G + G+ +L
Sbjct: 195 EGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 19/218 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +++++ Y L I TIE G V G G GK+++L + G+I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+G+ I ++G+ +P+ + S+ D L L V + + +
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLK-AVA--SLYGVKVNKN-EIMDA 118
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
+E+V + K+ G S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 119 LESVEVLDLKKKLG-ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 1402 SECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQG 1437
K G+ +I+ +S D L
Sbjct: 178 EILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 29/202 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 676 YVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
++P+ + ++ D + G + + L++ + D+ +G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DLKKKLG-------- 132
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LS G R+ LA + ++IY+LDD + A+D +L +I+ + I+
Sbjct: 133 ---ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVII 188
Query: 790 CTHNVQAISAADMVVVMDKGQV 811
+ + D+ + K
Sbjct: 189 SSREELSY--CDVNENLHKYST 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-27
Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 52/249 (20%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 56
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE------- 1334
G + L A + Q PF V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTP----------PFAT-------PVWHYLTLHQH 99
Query: 1335 ----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL-------KSSKVLCLDE 1383
+ + A+ L+ + S S G+ Q + LA +L + ++L LDE
Sbjct: 100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159
Query: 1384 CTANVD-AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQG 1437
++D AQ +++ + + +G+ ++ +H LN +L G ++ G
Sbjct: 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHD----LNHTLRHAHRAWLLKGGKMLASG 215
Query: 1438 NPQTLLQDE 1446
+ +L
Sbjct: 216 RREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 47/223 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +S + G ++ ++G G+GKS+LL + G GSI +G
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
AY+ Q + + ++ + ++ A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLG 121
Query: 730 KGVN-LSGGQRARLALARA-------VYHGSDIYMLDDVLSAVD----AQVARWILSNAI 777
+ N LSGG+ R+ LA + +LD+ ++++D + + + + + +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 778 MGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
G ++ +H++ + A ++ G++ G +
Sbjct: 182 QG-----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 47/240 (19%), Positives = 98/240 (40%), Gaps = 41/240 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +N+ Y + +NF + G + ++G+ G GKS++L+ L + G+I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------------HMNDDLKIW 1330
++ VPQ + + H+N
Sbjct: 63 ------------EVYQSIGFVPQFF--------SSPFAYSVLDIVLMGRSTHIN-TFAKP 101
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ + ++ + L + + S GQRQLI +ARA+ K++ LDE T+ +D
Sbjct: 102 KSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1390 AQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
I+ + + ++ + MTV+ H+ + V+ + ++ L+L+ + G + +L E
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ-NFKFGETRNILTSE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP- 681
+N + Q++ L KG ++AV+G+ G GKS+LL+ +LG G I SI +VPQ
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFS 76
Query: 682 WILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISL----MVGGDMAYIGEKGVN-LS 735
+ ++ D +L G++ + K+ D +++ + + ++ ++ LS
Sbjct: 77 SPFAYSVLDIVLMGRS--THINTFAKPKS--HDYQVAMQALDYLN--LTHLAKREFTSLS 130
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV- 794
GGQR + +ARA+ + +LD+ SA+D +LS I T + TH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 795 QAISAADMVVVMDKGQV 811
Q ++ A+ ++++K
Sbjct: 191 QVVAIANKTLLLNKQNF 207
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-22
Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 38/265 (14%)
Query: 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTG 1260
+ S D + +I+ N+T + AL++++ + G G++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 1261 AGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG---RFAVVPQSPFLFEG-SLRD 1316
AGKS+++ + L G +LVDG + +L + ++ Q L ++
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124
Query: 1317 NLD-PFHMNDDLKIWSVLE---KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLIC 1367
N+ P L++ + + K V E + VGL SG GQ+Q +
Sbjct: 125 NVALP------LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG-----GQKQRVA 173
Query: 1368 LARALLKSSKVLCLDECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-D 1423
+ARAL + KVL D+ T+ +D T SIL+ I+ G+T++ I H + V + D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICD 232
Query: 1424 EILILDHGHLVEQG-------NPQT 1441
+ ++ +G L+EQ +P+T
Sbjct: 233 CVAVISNGELIEQDTVSEVFSHPKT 257
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 673 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 720
I + Q +LS T+ N+ K+ + +E L +V
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS----------LV 151
Query: 721 GGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 774
G +G+K NLSGGQ+ R+A+ARA+ + + D SA+D R IL
Sbjct: 152 G-----LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 775 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
N +G T +L TH + + D V V+ G++ + +++
Sbjct: 207 KDINRRLG-----LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-20
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 19/232 (8%)
Query: 1227 NVTMRYKPSLPAALHDINF-TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
V RYK + T + T +G++G+ G GK+++L L G +
Sbjct: 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NS 58
Query: 1286 LNIINTPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------- 1337
+ ++ RG + + L+ ++ K
Sbjct: 59 KVGKDEVLKRFRGKEIYNYFKELY--SNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 1338 --VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
E E + + + S G Q + +A +LL+ + V D+ ++ +D +
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
+ AI K VI + H + + + D I I+ V ++
Sbjct: 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-19
Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 28/210 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L N + G +GI+G G GK++ L G + + +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---------- 332
Query: 1299 RFAVVPQSPFL-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKESGI 1356
+ PQ F ++G+++ L ++ ++ EEV + + L ++ +
Sbjct: 333 --SYKPQRIFPNYDGTVQQYL------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1412
S G+ Q + +A L K + + LD+ ++ +D A ++ + I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFII 442
Query: 1413 AHRISTVLNM-DEILILDHGHLVEQGNPQT 1441
H +S + D I++ G + G +
Sbjct: 443 DHDLSIHDYIADRIIVFK-GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 29/205 (14%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 681
+ L + +G ++ ++G G GK++ ++GE+ GS+ ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 682 WI-----LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLS 735
+ + + + + + E K L L+ E V +LS
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH---RLL---------ESNVNDLS 387
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILCT 791
GG+ +L +A + +D+Y+LD S +D VA+ I + +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIID 443
Query: 792 HNVQAISA-ADMVVVMDKGQVKWIG 815
H++ AD ++V KG+ + G
Sbjct: 444 HDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 39/213 (18%)
Query: 627 LNQVSLCLPK-GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGS- 673
L PK +++ V+G+ G GK+++L + GE++ G G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGG-----DM 724
I + + I+ K + S+ LK + +D +M
Sbjct: 74 IYNYFKEL----YSNELKIVH-KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM 128
Query: 725 AYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ K LSGG RL +A ++ +D+Y+ D S +D + + AI L
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAI---REL 184
Query: 784 QKTR--ILCTHN---VQAISAADMVVVMDKGQV 811
K + I+ H+ + + D++ ++
Sbjct: 185 LKNKYVIVVDHDLIVLDYL--TDLIHIIYGESS 215
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 4e-20
Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 33/242 (13%)
Query: 1222 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
++ +N+ + K AL ++ ++ G I+G G+GKS+++N +
Sbjct: 7 ILRTENIVKYFGEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61
Query: 1279 GQILVDGLNIINTPVRDL--RG--R-FAVVPQSPFLFEG-SLRDN-LDPFHMNDDLKIWS 1331
G++ + +I N +L G R F Q+P + ++ +N L + + S
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF----QTPQPLKEMTVLENLLIGEICPGESPLNS 117
Query: 1332 VLEKCHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+ K + +E E + L S GQ +L+ + RAL+ + K++ +
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177
Query: 1382 DECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1438
DE A V A + N + KG+T + I HR+ VLN D + ++ +G ++ +G
Sbjct: 178 DEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Query: 1439 PQ 1440
+
Sbjct: 237 GE 238
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 52/223 (23%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------- 678
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++ I
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 679 ------QVPWILSG-TIRDNILFGKNYDPQSYSETL--------------KACTL--DVD 715
Q P L T+ +N+L G+ +S +L KA + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+S K LSGGQ + + RA+ + ++D+ ++ V L++
Sbjct: 143 LS-------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG-----LAH 190
Query: 776 AIMGPHMLQKTR------ILCTHNVQAISA-ADMVVVMDKGQV 811
I + + + + ++ H + + D + VM GQ+
Sbjct: 191 DIF--NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 44/240 (18%), Positives = 80/240 (33%), Gaps = 26/240 (10%)
Query: 1218 PFQGL-------IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1270
PF + +VT RY + + T G +G+VG G GKS+ L L
Sbjct: 66 PFDAIQIINLPTNLEAHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123
Query: 1271 FRLTPICGGQILV-----------DGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL 1318
G+ G + N + L + + ++
Sbjct: 124 AGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183
Query: 1319 DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377
L++ E VK ++ + LE +K S G+ Q + + ++ +
Sbjct: 184 VQKVGELLKLRMEKSPED--VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241
Query: 1378 VLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1435
V DE ++ +D + I S VI + H +S + + D + I+ V
Sbjct: 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 31/214 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L+ + ++G G GK++++ L GQ + V
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQ 420
Query: 1299 RFAVVPQSPF--LFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1356
+ A LF +R D+ V+ + ++ + +
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV--------------VKPLRIDDIIDQEVQ 466
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1412
S G+ Q + + AL + + +DE +A +D + +++ I T +
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIV 524
Query: 1413 AHRISTVLNM-DEILILDHGHLVE--QGNPQTLL 1443
H + D++++ + P++LL
Sbjct: 525 EHDFIMATYLADKVIVFEGIPSKNAHARAPESLL 558
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-18
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW- 682
+ VLN ++ ++GE G+GK++L+ + G + G +++ PQ
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 683 --------ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 733
+ IR L +PQ ++ +K +D ++ ++ V +
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVVKPLRID---DII---------DQEVQH 467
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 792
LSGG+ R+A+ A+ +DIY++D+ + +D++ R I S I + +KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-RIICSKVIRRFILHNKKTAFIVEH 526
Query: 793 NVQAISA-ADMVVVMDKGQVK 812
+ + AD V+V + K
Sbjct: 527 DFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-10
Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 58/230 (25%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------- 673
N G ++ ++G G GKS+ L + G+ G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 674 ----------------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
YV +P + G ++ + + E +K
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ-KVGELLKLRMEKSPEDVKRYI 206
Query: 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQ 767
+ + ++ I + LSGG+ R A+ + +D+YM D+ S +D
Sbjct: 207 KILQLENVLK---RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 768 VARWILSNAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVMDKGQV 811
A+ I S L K I H+ + + +D V ++
Sbjct: 260 AAQIIRS--------LLAPTKYVICVEHDLSVLDYL--SDFVCIIYGVPS 299
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 27/226 (11%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----GQ 1280
+ RY + L+ + ++ G VGIVG G GKS+ + L +L P
Sbjct: 26 DCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1281 ILVDGLNIINTPVRDLR---GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVL 1333
++ + G V + ++ +L P + + LK
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-------DLIPKAVKGKVIELLKKADET 136
Query: 1334 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
K ++E V+A+ LE ++ S G+ Q + +A ALL+++ DE ++ +D +
Sbjct: 137 GK--LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 1394 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
AI +G +V+ + H ++ + + D I ++ +G G
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 34/208 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L I+ G +GIVG G GK++ + L + G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHVKEEV-EAVGLETFVKES 1354
V + ++ D +L S L K E+ + +G+
Sbjct: 348 --TVAYKPQYIK-------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1410
S G+ Q + +A LL+ + + LDE +A +D + +++ + T +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTAL 456
Query: 1411 TIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ H + + + D +++ + G + G
Sbjct: 457 VVEHDVLMIDYVSDRLMVFE-GEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-15
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 679
+ L + KG ++ ++G G GK++ + + G T G I ++AY PQ
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 733
V +LS + +E LK + L ++ V
Sbjct: 359 DYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGII---DLY---------DREVNE 401
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRIL 789
LSGG+ R+A+A + +DIY+LD+ + +D V+R + + + +KT ++
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEK---NEKTALV 457
Query: 790 CTHNVQAISA-ADMVVVMDKGQVK 812
H+V I +D ++V + K
Sbjct: 458 VEHDVLMIDYVSDRLMVFEGEPGK 481
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
N + + +G +V ++G G+GKS+ + + G+++ + S
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92
Query: 673 ------------SIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
I V + +P + G + + + K + E +K +
Sbjct: 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVK----AL 146
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
++ ++ I LSGG+ R+A+A A+ + Y D+ S +D +
Sbjct: 147 ELENVLE---REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA- 198
Query: 775 NAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVM 806
AI L K+ ++ H+ + + +D++ V+
Sbjct: 199 RAI---RRLSEEGKSVLVVEHDLAVLDYL--SDIIHVV 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.8 bits (211), Expect = 3e-18
Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 62/256 (24%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1282 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+ +G +I N P + A+VP+ +F ++ +NL + ++ +K +K
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL-------MMGAYNRKDKEGIK 116
Query: 1340 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1385
++E + F +KE SG G++Q++ + RAL+ K+L +DE +
Sbjct: 117 RDLEWI-FSLFPRLKERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDEPSLGL 170
Query: 1386 ------------ANVDAQTASIL---QNAISSECKGMTVITIAHRISTVLNMDEILILDH 1430
++ + +IL QNA+ + + +AH +L+
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALGA-------LKVAHY---------GYVLET 214
Query: 1431 GHLVEQGNPQTLLQDE 1446
G +V +G LL +E
Sbjct: 215 GQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 51/227 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+ + L +P+G +V +IG G+GK++ L++I G + G I +G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 674 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY---- 726
IA VP+ I T+ +N++ G +Y+ K + D+ + +
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMG------AYNRKDKE-GIKRDL------EWIFSLFP 127
Query: 727 -----IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAI 777
+ + G LSGG++ LA+ RA+ + M+D+ L+ + ++V I
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 778 MGPHML---QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
G +L Q A+ A V++ GQ+ G +++L
Sbjct: 188 EGTTILLVEQNAL-------GALKVAHYGYVLETGQIVLEGKASELL 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-18
Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 27/227 (11%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----G 1279
++ RY + A + ++ G VGIVG G GK++ + L +L P
Sbjct: 95 EDCVHRYGVN--AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1280 QILVDGLNI--INTPVRDLR-GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSV 1332
++ + L+ G V + ++ +L P + + LK
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDE 205
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
+ K +E V+ + LE + S G+ Q + +A ALL+ + DE ++ +D +
Sbjct: 206 VGK--FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 1393 ASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+ I +G V+ + H ++ + + D I ++ +G G
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 37/225 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E+ + Y L I G +GIVG G GK++ + L + G++
Sbjct: 357 LVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHV 1338
D V + ++ + +L S L
Sbjct: 414 EWDL---------------TVAYKPQYI-------KAEYEGTVYELLSKIDSSKLNSNFY 451
Query: 1339 KEEV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1393
K E+ + +G+ + S G+ Q + +A LL+ + + LDE +A +D +
Sbjct: 452 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1437
+++ + T + + H + + + D +++ + G G
Sbjct: 512 RAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 679
+ L + KG ++ ++G G GK++ + + G T G + ++AY PQ
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734
V +LS + +E LK + V +L
Sbjct: 429 EYEGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDLYDRNVE-----------DL 472
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILC 790
SGG+ R+A+A + +DIY+LD+ + +D V+R I +KT ++
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVV 528
Query: 791 THNVQAISA-ADMVVVMDKGQVKWIG 815
H+V I +D ++V + G+ G
Sbjct: 529 EHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----------- 671
N + + G +V ++G G+GK++ + + G+++ + S
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 672 -----------GSIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
G I V + +P + G +R+ L K + + E +K ++
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVK----EL 216
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
++ ++ + + LSGG+ R+A+A A+ + Y D
Sbjct: 217 ELENVLD---RELHQ----LSGGELQRVAIAAALLRKAHFYFFD 253
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 57/231 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
VLN +SL L G ++ +IG G GK++LL + G G I SG
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 673 ---SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG- 721
+ Y+ Q G T+ NI +G ++ + ++ L + G
Sbjct: 78 RERRLGYLVQ-----EGVLFPHLTVYRNIAYGLGNGKGRTAQERQR----IEAMLELTGI 128
Query: 722 GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSN 775
++A Y E LSGGQ+ R ALARA+ ++ +LD+ SA+D Q+ +++
Sbjct: 129 SELAGRYPHE----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA- 183
Query: 776 AIMGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
+ + + +H+ + A+ AD + VM +G++ S +L
Sbjct: 184 -------ALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 4e-13
Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 74/259 (28%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ +++ ++ + L+DI+ +++ G + I+G +G GK+++L L G+I
Sbjct: 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1282 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1334
+ G I + +L R + Q LF P H+ +V
Sbjct: 62 SLSG-KTIFSKNTNLPVRERRLGYLVQEGVLF---------P-HL-------TVYRNIAY 103
Query: 1335 ------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSK 1377
+ ++ +E G+ SG GQ+Q LARAL +
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPDPE 158
Query: 1378 VLCLDECTANVDAQ--------TASILQNAISSECKGMTVITIAH------RISTVLNMD 1423
++ LDE + +D Q + L+ G + + ++H + + D
Sbjct: 159 LILLDEPFSALDEQLRRQIREDMIAALRAN------GKSAVFVSHDREEALQYA-----D 207
Query: 1424 EILILDHGHLVEQGNPQTL 1442
I ++ G +++ +P L
Sbjct: 208 RIAVMKQGRILQTASPHEL 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 53/229 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--- 678
+ VS + +G +V ++G GSGK+++L I G T G + G + +P
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 679 -QVPWILSG------------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GD 723
V G T+ DN+ FG E V L +
Sbjct: 87 RNV-----GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR----VRELLRFMRLES 137
Query: 724 MA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSNAI 777
A + E LSGGQ+ R+ALARA+ + + D+ +A+D Q+ ++
Sbjct: 138 YANRFPHE----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ--- 190
Query: 778 MGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
+ T + TH+ Q A+ AD V+V+ +G V+ G+ ++
Sbjct: 191 -----VHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 41/240 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF V Y + + ++F I G VG++G +G+GK++IL + L G +
Sbjct: 15 IEFVGVEKIYPGGARS-VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-------- 1334
+ G + + P + R +V Q+ LF HM V +
Sbjct: 74 IGGKRVTDLPPQK-RN-VGLVFQNYALF---------Q-HMT-------VYDNVSFGLRE 114
Query: 1335 --------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
V+E + + LE++ S GQ+Q + LARAL +VL DE A
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 1387 NVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ-GNPQTL 1442
+D Q L+ + + G+T + + H L + D +L+L G+ VEQ G P+ +
Sbjct: 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN-VEQFGTPEEV 233
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1282 LVDGLNIINTPV--RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1333
L+DG ++ + D+ A V Q+ LF P HMN + +++ +
Sbjct: 58 LLDGKDVTDLSPEKHDI----AFVYQNYSLF---------P-HMNVKKNLEFGMRMKKIK 103
Query: 1334 EKCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ V + + +E + SG G++Q + LARAL+ + K+L LDE + +
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG-----GEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 1389 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1441
D +T + +TV+ I H + M D I ++ G L++ G P+
Sbjct: 159 DPRTQENARE----MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
Query: 1442 L 1442
+
Sbjct: 215 I 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 9e-12
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPW 682
N L+ +SL + G ++G G+GK+ L I G + G I G + + P
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PE 70
Query: 683 ---ILSG------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVG-G 722
I ++ N+ FG K DP+ +T + +
Sbjct: 71 KHDI--AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR----------DLKIE 118
Query: 723 DMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + +
Sbjct: 119 HLLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLS-- 171
Query: 781 HMLQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+L K T + TH+ +A AD + V+ G++ +G ++
Sbjct: 172 -VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 52/249 (20%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I+ + + L IN I G V ++G +G+GKS+ L L L G+I
Sbjct: 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1282 LVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC--- 1336
++DG+N+ T + +R +V Q F NL P HM +VL
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQR-F--------NLFP-HM-------TVLNNITLA 124
Query: 1337 --HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
V +E+ EA VGL+ S S GQ Q + +ARAL K++ D
Sbjct: 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 1383 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNM-------DEILILDHGHLV 1434
E T+ +D + +L +GMT++ + H M D +L +D G+++
Sbjct: 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE------MGFAREVGDRVLFMDGGYII 238
Query: 1435 EQGNPQTLL 1443
E+G P+ L
Sbjct: 239 EEGKPEDLF 247
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 29/227 (12%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQ-VGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
R +N E G ++G TGAGKS L + + G++ ++G
Sbjct: 6 RAEKRLGN------FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-KCHV 1338
+I P RG VPQ LF P H++ + L+ +E V
Sbjct: 60 ADITPLPPER-RG-IGFVPQDYALF---------P-HLSVYRNIAYGLRNVERVERDRRV 107
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E E +G+ + S G+RQ + LARAL+ ++L LDE + VD +T +L
Sbjct: 108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 1399 AISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1442
+ + + ++ + H + + DE+ ++ +G +VE+G + L
Sbjct: 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------IAYVPQ---- 679
++G G+GKS L I G + G + +G+ I +VPQ
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 680 VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVG-GDMA--YIGEKGVNLS 735
P + ++ NI +G +N + ++ + +G + LS
Sbjct: 82 FPHL---SVYRNIAYGLRNVERVERDRRVRE-MAE-----KLGIAHLLDRKPAR----LS 128
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCT 791
GG+R R+ALARA+ + +LD+ LSAVD + + +L + +Q+ + T
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKT-KGVLMEELR---FVQREFDVPILHVT 184
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGSSADL 820
H+ ++A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 58/249 (23%), Positives = 115/249 (46%), Gaps = 37/249 (14%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1283 VDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV 1332
D + + + R +V Q+ L+ P ++ ++ L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRK-IGMVFQTWALY---------P-NLTAFENIAFPLTNMKM 112
Query: 1333 ----LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ K V+E + + + + S Q+Q + LARAL+K +L LDE +N+
Sbjct: 113 SKEEIRK-RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1389 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1441
DA+ ++++ + K G+T++ ++H + + + D + +L G LV+ G P+
Sbjct: 172 DAR----MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
Query: 1442 LLQDECSVF 1450
L + S+
Sbjct: 228 LYDNPVSIQ 236
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 604 MA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662
M +I+++ + + V L+ V++ + G ++G G+GK++ + I G +
Sbjct: 1 MVRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
Query: 663 LTHGSIHASGS----------------IAYV-------PQVPWILSGTIRDNILFG---K 696
+ G ++ I V P + T +NI F
Sbjct: 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL------TAFENIAFPLTNM 110
Query: 697 NYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 754
+ + ++ A LD+ + LSG Q+ R+ALARA+ +
Sbjct: 111 KMSKEEIRKRVEEVAKILDIH---------HVLNHFPRELSGAQQQRVALARALVKDPSL 161
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHN-VQAISAADMVVVMDKGQVK 812
+LD+ S +DA++ R + L T ++ +H+ + AD V V+ KG++
Sbjct: 162 LLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
Query: 813 WIGSSADL 820
+G DL
Sbjct: 221 QVGKPEDL 228
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-11
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 21/291 (7%)
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
+ S + L+ + A + ++ + L A+
Sbjct: 333 AIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADL---IDERIIDQQAWF 389
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 624
+ + E K + + N N D +D + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
++ L L + + G G GKS+L+ +I + YV
Sbjct: 450 LLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANGQ-VDGFPTQEECRTVYVEHDIDGT 507
Query: 685 SG--TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
++ D + ++ + L G I LSGG + +L
Sbjct: 508 HSDTSVLDFVFESGVGTKEAIKDKLIE----------FGFTDEMIAMPISALSGGWKMKL 557
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
ALARAV +DI +LD+ + +D W L N + T I +H+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAW-LVNYLNT---CGITSITISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-10
Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 59/230 (25%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L+ ++ + GI G G GKS+++ A I GQ VDG R
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRA------IANGQ--VDGFPTQE------ECR 496
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH---------VKEEVEAVGL--E 1348
V SVL+ +K+++ G E
Sbjct: 497 TVYVEHDIDGTHSDT----------------SVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1349 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C T
Sbjct: 541 MIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGI-T 597
Query: 1409 VITIAHRISTVLN--MDEILILDHGHLVE-QGNPQTLLQDECSVFSSFVR 1455
ITI+H S L+ + I+ + L + +GN F+ FV+
Sbjct: 598 SITISH-DSVFLDNVCEYIINYEGLKLRKYKGN-----------FTEFVK 635
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1177 GNFLSSFTETEKEMVSLERV----LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY 1232
GN + F + + E + LE+ L G ++ + +++ N+ +Y
Sbjct: 628 GN-FTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ-----KAIVKVTNMEFQY 681
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ + DINF +++ ++G GAGKS+++N L G++
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
+ ++ S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR- 1415
S GQ+ + LA + ++ LDE T +D + L A+ +G VI I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EG-GVIIITHSA 958
Query: 1416 --ISTVLNMDEILILDHGHLVE-QGN 1438
+ +E+ + G + N
Sbjct: 959 EFTKNL--TEEVWAVKDGRMTPSGHN 982
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQ+ +L LA + + +LD+ + +D LS A+ + I+ TH
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA-LSKALKE---FEGGVIIITH 956
Query: 793 NVQAISA-ADMVVVMDKGQVK 812
+ + + V + G++
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMT 977
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 61/275 (22%), Positives = 98/275 (35%), Gaps = 92/275 (33%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1282 LVDGLNIINTP-------------VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1328
+V+G NI +R LR R +V Q F NL HM
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-F--------NLWS-HM----- 108
Query: 1329 IWSVLEKC-----HV----KEEVEA--------VGLETFVKE------SGISFSVGQRQL 1365
+VLE V K + VG++ + SG GQ+Q
Sbjct: 109 --TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG-----GQQQR 161
Query: 1366 ICLARALLKSSKVLCLDECTANVD--------------AQTASILQNAISSECKGMTVIT 1411
+ +ARAL VL DE T+ +D A+ G T++
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-------------GKTMVV 208
Query: 1412 IAHRIS---TVLNMDEILILDHGHLVEQGNPQTLL 1443
+ H + V ++ L G + E+G+P+ +
Sbjct: 209 VTHEMGFARHV--SSHVIFLHQGKIEEEGDPEQVF 241
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 62/247 (25%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQ 1280
++ +N+ + L I+ +++ G V I+G +G+GKS++L L L P G+
Sbjct: 4 ILRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGK 60
Query: 1281 ILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1334
+ ++G + T ++L + V Q ++ +L + LE
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQF--------------HYLIPEL---TALENV 103
Query: 1335 --------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKS 1375
K + + +GL + SG G++Q + +ARAL
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG-----GEQQRVAIARALANE 158
Query: 1376 SKVLCLDECTANVDAQTA----SILQ--NAISSECKGMTVITIAHRISTVLNMDEILILD 1429
+L DE T N+D+ I N G +++ + H L +
Sbjct: 159 PILLFADEPTGNLDSANTKRVMDIFLKINE-----GGTSIVMVTHERELAELTHRTLEMK 213
Query: 1430 HGHLVEQ 1436
G +V +
Sbjct: 214 DGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+L +SL + KG V++IG GSGKS+LL ILG
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG 51
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 1222 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG 1278
+++ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L P
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TE 59
Query: 1279 GQILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKI 1329
G++ +D + + +L R + V Q P L + +N++ P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAM 116
Query: 1330 WSVLEKCHVKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDE 1383
+ E ++ LE SG GQ+Q + +ARAL + ++ D+
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSG-----GQQQRVAIARALANNPPIILADQ 171
Query: 1384 CTANVDAQTA----SILQNAISSECKGMTVITIAH 1414
T +D++T +L+ ++ E G TV+ + H
Sbjct: 172 PTWALDSKTGEKIMQLLKK-LNEE-DGKTVVVVTH 204
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
EE L V+L + +G V+++G GSGKS++LN I+G
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG 52
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 87/581 (14%), Positives = 174/581 (29%), Gaps = 144/581 (24%)
Query: 572 FLGCSEYKHELEQ-AANSPSYIS--NGLSNFNS--KDMAVIMQDATCSWYCNNEEEQNVV 626
FL S K E Q + + YI + L N N V + + +
Sbjct: 93 FL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV------------SRLQPYLK 139
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
L Q L L V + G +GSGK+ + + L++ ++ W+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDF-----KIFWL--- 187
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746
N P++ E L+ +D + D + + ++ S R L
Sbjct: 188 ----N--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKS 240
Query: 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAI-MGPHMLQKTR------ILCTHNVQAISA 799
Y + +L +V +A NA + +L TR L IS
Sbjct: 241 KPYENCLL-VLLNVQNA-------KAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 800 ADMVVVMDKGQV-----KWIGSSAD-----------LAVSLYSGFWS--TNEFDTSLHMQ 841
+ + +V K++ +S+ + +D H+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 842 KQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 901
++ T ++ S + E E + + L+V+ A I
Sbjct: 352 CDKLTT---------------IIESSLNVLEPAEYRKMFD---RLSVFPPSAH-----IP 388
Query: 902 L-VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRA 960
++ L +W S +V L +
Sbjct: 389 TILLSL-------------IW----------FDVIKSDVMVVVNKLH----KYSLVEKQP 421
Query: 961 FSFAFGSLRAAVKVHN---TLLTKIVNAPVLFFDQTPGGRILNRFS-SDLYMIDDSLPFI 1016
+ + L K+ N L I++ ++ + DD +P
Sbjct: 422 KESTIS-------IPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 1017 LNILLANFVG--LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSR 1074
L+ + +G L I F ++ + F F+ K++ + + L+++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1075 SPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS 1115
Y + N R + F+ K +E+++ + T
Sbjct: 527 LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 4e-07
Identities = 68/399 (17%), Positives = 134/399 (33%), Gaps = 118/399 (29%)
Query: 201 NTDSGNNQ-SYWDLM-----AF-KSID----SVMNRGVIKQLDFEDLLGLPTDMDPS--- 246
+ ++G +Q Y D++ AF + D M + ++ + + + ++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 247 --TCHSK-------------------LLSCWQAQRSCNCTNPSLVRAICCAYGYPYI-CL 284
T SK L+S + + PS++ + YI
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTRM-------YIEQR 116
Query: 285 GLLKVVNDSIGFAG-----PLLLNKLIKFLQQ-------------GSGHLDGYVLAIALG 326
++ ND+ FA KL + L + GSG +A+ +
Sbjct: 117 D--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVC 171
Query: 327 LTSILKSFFDTQYSFHLSKLKLKLRSSIMTII-YQKCLYVRL----AERSEFSDGEIQTF 381
L+ ++ D F + L LK +S T++ + L ++ RS+ S
Sbjct: 172 LSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 382 MSVDTDRTVNLANSFH--------DAWSL----PFQIGVALYLLYTQVK--FAFVSGLAI 427
S+ + L + + + + F + + LL T+ K F+S
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATT 286
Query: 428 TILLIPVNKWIANLIANATE----KMMKQKDERIRRTGEIL-THIRTLKMYG-------- 474
T I ++ L + + K + + + + R E+L T+ R L +
Sbjct: 287 TH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLA 342
Query: 475 ----WEQIFSSWLMKTRSSEVKHLST---RKYLDAWCVF 506
W+ + L S + L RK D VF
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 4e-04
Identities = 88/552 (15%), Positives = 154/552 (27%), Gaps = 178/552 (32%)
Query: 749 YHGSDI--YMLDDVLSAVDAQ----VARWILSNA-----IMGPHMLQKTR----ILCTHN 793
Y DI D + D + + + ILS IM + T L +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN 853
+ + V + + K++ S T + S+ + + + +
Sbjct: 76 EEMV--QKFVEEVLRINYKFLMSP-----------IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 854 KQILLQEKDVVSVSDDAQEIIEV--EQRKEGRVELTVY--KNYAKFSGWFITLVICLSAI 909
Q+ K VS ++ + E R V + K ++ L +CLS
Sbjct: 123 NQVF--AKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGK---TWVALDVCLSYK 175
Query: 910 LMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969
+ Q + WL+ +
Sbjct: 176 V-QCKMDFKIFWLN-----------------------------------------LKNCN 193
Query: 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLG 1029
+ T+L + L + P + SS++ + S+ L LL +
Sbjct: 194 SP----ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------ 240
Query: 1030 IAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1089
Y LLV L +V + + +F N S
Sbjct: 241 ----KPYENC----LLV----------------------LLNVQNAKAWNAF----NLSC 266
Query: 1090 TI----RAFKSEDYFMAKFKEHVVL--YQRTSYSELTASL---WLSLRLQLLAA------ 1134
I R + D+ A H+ L + T + SL +L R Q L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1135 -FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETE-KEM-V 1191
+S IA G AT+ + +++ + L+ E ++M
Sbjct: 327 PRRLSIIAESIRDG-----LATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 1192 SL----------ERVLE-------YMDVPQ--EELCGYQSLSPDWPFQGLIEFQNVTMRY 1232
L +L DV +L Y SL P + I ++ +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLEL 435
Query: 1233 KPSLP--AALHD 1242
K L ALH
Sbjct: 436 KVKLENEYALHR 447
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 57/257 (22%), Positives = 113/257 (43%), Gaps = 60/257 (23%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ +N+ ++ + A L++IN I+ G + ++G +G+GKS++L + + G+I
Sbjct: 4 IKLENIVKKF-GNFTA-LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
D ++ P +D R +V Q+ P + ++ N + L++ + +
Sbjct: 62 FDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKN-----IAFPLEL-RKAPREEI 110
Query: 1339 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
++V V ++ + SG GQ+Q + +ARAL+K +VL LDE +N+D
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1390 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1433
A L+ + +E K G+T + +A R I ++ G +
Sbjct: 166 AL----LRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR---------IAVIREGEI 212
Query: 1434 VEQGNPQTLLQDECSVF 1450
++ G P + F
Sbjct: 213 LQVGTPDEVYYKPKYKF 229
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
LN ++L + G +A++G GSGKS+LL +I G T G I+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76
Query: 674 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
+ V P + T+ NI F + + + ++ A L +D
Sbjct: 77 VGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID------ 124
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ LSGGQ+ R+A+ARA+ ++ +LD+ LS +DA ++ R L
Sbjct: 125 ---KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--L 179
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ +A++ AD + V+ +G++ +G+ ++
Sbjct: 180 Q------KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 62/258 (24%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T R+ + A ++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 12 VKLENLTKRF-GNFTA-VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
++ P +D R ++V QS P + ++ +N + LKI K +
Sbjct: 70 FGDRDVTYLPPKD-RN-ISMVFQSYAVWPHM---TVYEN-----IAFPLKI-KKFPKDEI 118
Query: 1339 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ V +E + + SG GQRQ + +ARA++ VL +DE +N+D
Sbjct: 119 DKRVRWAAELLQIEELLNRYPAQLSG-----GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1390 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1433
A+ L+ A+ +E K +T I T+ R I +++ G
Sbjct: 174 AK----LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---------IAVMNRGQ- 219
Query: 1434 VEQ-GNPQTLLQDECSVF 1450
+ Q G+P + SVF
Sbjct: 220 LLQIGSPTEVYLRPNSVF 237
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 62/257 (24%)
Query: 597 SNFNSKDMA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 655
+N M V +++ T + +N+++L + G + ++G G GK++ L
Sbjct: 2 NNIEVIKMVEVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 55
Query: 656 SILGEMMLTHGSIHASGS-----------IAYV-------PQVPWILSGTIRDNILFG-- 695
I G T G I+ I+ V P + T+ +NI F
Sbjct: 56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM------TVYENIAFPLK 109
Query: 696 -KNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752
K + + ++ A L ++ + LSGGQR R+A+ARA+
Sbjct: 110 IKKFPKDEIDKRVRWAAELLQIE---------ELLNRYPAQLSGGQRQRVAVARAIVVEP 160
Query: 753 DIYMLDDVLSAVDA--------QVARWILSNAIMGPHMLQKTRILCTHN-VQAISAADMV 803
D+ ++D+ LS +DA ++ + L L+ T I TH+ V+A++ D +
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKK--LQ------QKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 804 VVMDKGQVKWIGSSADL 820
VM++GQ+ IGS ++
Sbjct: 213 AVMNRGQLLQIGSPTEV 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I N+ + A+ ++F ++ G V ++G +G GK++ L L + G+I
Sbjct: 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
D + + + P + R +V Q+ P + ++ +N + L+ + K V
Sbjct: 62 FDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFEN-----IAFPLRA-RRISKDEV 110
Query: 1339 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
++ V + ++ + SG GQ+Q + LARAL+K KVL DE +N+D
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPTQLSG-----GQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 1390 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1433
A L+ + +E K G+T + T+A R I + + G
Sbjct: 166 AN----LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR---------IAVFNQGK- 211
Query: 1434 VEQ-GNPQTLLQDECSVF 1450
+ Q G P + ++F
Sbjct: 212 LVQYGTPDEVYDSPKNMF 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 55/228 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
++ VS + G VA++G G GK++ L + G T G I+
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 674 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
+ V P + T+ +NI F + + + A L +D
Sbjct: 77 VGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLID------ 124
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ K LSGGQ+ R+ALARA+ + + D+ LS +DA ++ L
Sbjct: 125 ---NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--L 179
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ +A++ A + V ++G++ G+ ++
Sbjct: 180 Q------QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +V + + A + +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 4 VRLVDVWKVF-GEVTA-VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD------N--LDPFHMN--DD----LK 1328
+ V D V P+ RD + L P HM D+ LK
Sbjct: 62 IGD-----KLVADPEKGIFVPPKD--------RDIAMVFQSYALYP-HMTVYDNIAFPLK 107
Query: 1329 IWSVLEKCHVKEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVL 1379
+ + + + + V V GL + +E SG GQRQ + L RA+++ +V
Sbjct: 108 L-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSG-----GQRQRVALGRAIVRKPQVF 161
Query: 1380 CLDECTANVDA 1390
+DE +N+DA
Sbjct: 162 LMDEPLSNLDA 172
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
+ ++SL + G + ++G G GK++ L I G + G I+ + P+ +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 685 SG------------------TIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
T+ DNI F + Q + ++ A L +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT------ 130
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ K LSGGQR R+AL RA+ ++++D+ LS +DA ++ + L
Sbjct: 131 ---ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--L 185
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T I TH+ V+A++ D + VM++G ++ +GS ++
Sbjct: 186 Q------RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 734 LSGGQRA------RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSGG+R RLA++ + + +LD+ +D + R ++ +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 307
Query: 788 ILCTHNVQAISAADMVVVMDKG 809
IL +H+ + AAD V+ +
Sbjct: 308 ILVSHDEELKDAADHVIRISLE 329
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 1211 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1270
SL +W G +F T + L + V ++G+ G GKSS +N+L
Sbjct: 2 GSLVREW--VGFQQFPAAT---QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
Query: 1271 -----FRLTPI-------CGGQILVDG--LNIINTP 1292
R++P + G +NII+TP
Sbjct: 57 IGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP 92
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 640 VAVIGEVGSGKSSLLNSILGE 660
V V+G+ G GKSS +NS++GE
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE 59
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
+ V+G++ GKS+ LN+++GE +L + + +
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVL 109
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
VAV GE GSGKSS +N++ G G+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 19/97 (19%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWILSNAIMGPH-MLQ 784
LSGGQR R+A+ R + +++LD+ LS +DA +++R L H L
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--L-------HKRLG 184
Query: 785 KTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+T I TH+ V+A++ AD +VV+D G+V +G +L
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ QNVT + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
+ + +TP + RG +V QS P L S+ +N M+ LK+ + +K +
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHL---SVAEN-----MSFGLKL-AGAKKEVI 110
Query: 1339 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ V V L + K SG GQRQ + + R L+ V LDE +N+D
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSG-----GQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1390 A 1390
A
Sbjct: 166 A 166
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 640 VAVIGEVGSGKSSLLNSILGE 660
+ V+G+ G GKSS +NSI+GE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGE 62
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1459 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-73 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-70 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-45 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-65 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-42 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-65 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-62 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-43 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-60 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-54 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-41 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-39 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-38 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-37 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-30 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-37 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-34 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-33 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 9e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-27 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.002 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 0.002 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 243 bits (621), Expect = 2e-73
Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 4/245 (1%)
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
P QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-DPFHMNDDLKIWSVL 1333
+ GQIL+DG NI + LR + +V Q LF ++++N+ D ++
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1451
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+VE G + L+ + +
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247
Query: 1452 SFVRA 1456
Sbjct: 248 HLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 174 bits (442), Expect = 2e-49
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + +L ++L + KG VA +G G GKS+L+N I +T G I G
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q + S T+++NIL G + E K I + G
Sbjct: 87 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE+GV LSGGQ+ RL++AR + I +LD+ SA+D + I + +
Sbjct: 147 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ--EALDVLSKDR 204
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T ++ H + I+ AD +VV++ G + G+ +L
Sbjct: 205 TTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 232 bits (593), Expect = 9e-70
Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
G +EF+NVT Y AL +IN I G V +VGR+G+GKS+I + + R I G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN--LDPFHMNDDLKIWSVLEKCH 1337
IL+DG ++ + LR + A+V Q+ LF ++ +N +I +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1338 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
+ + + GL+T + E+G+ S GQRQ I +ARALL+ S +L LDE T+ +D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
+Q A+ K T + IAHR+ST+ DEI++++ G +VE+G LL + V++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLHK 249
Query: 1456 A 1456
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 161 bits (410), Expect = 3e-45
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 83
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDM 724
+A V Q + + T+ +NI + + Y + E + I+ M G
Sbjct: 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 143
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I A +
Sbjct: 144 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ--AALDELQKN 201
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
+T ++ H + I AD +VV++ G + G+ ++L +Y+
Sbjct: 202 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 219 bits (560), Expect = 2e-65
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 3/239 (1%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1341
+DG ++ LR + VV Q L S+ DN+ + K+ + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1342 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1400 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S + +
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 3e-42
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
+ V Q +L+ +I DNI + K IS + G
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M +
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKGR 189
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
T I+ H + + AD ++VM+KG++ G +L SLYS +
Sbjct: 190 TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 218 bits (557), Expect = 6e-65
Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 9/252 (3%)
Query: 1212 SLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1270
L+P +GL++FQ+V+ Y L + FT+ G +VG G+GKS++ L
Sbjct: 2 LLTP-LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 1271 FRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLK 1328
L GGQ+L+DG + R L + A V Q P +F SL++N+ +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 1329 IWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
I + K + + G +T V E+G S GQRQ + LARAL++ VL LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 1387 NVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1444
+DA + ++ + S E +V+ I +S V D IL L+ G + E G Q L++
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 1445 DECSVFSSFVRA 1456
+ + + V+A
Sbjct: 241 -KKGCYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (410), Expect = 3e-45
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+VL ++ L G + A++G GSGKS++ + T G + G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVGGDM 724
+A V Q P + ++++NI +G P + + IS + G
Sbjct: 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+ E G LSGGQR +ALARA+ + +LDD SA+DA + P
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ +L T ++ + AD ++ ++ G ++ G+ L
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 210 bits (537), Expect = 2e-62
Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 6/238 (2%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ ++V Y S L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVK 1339
+DG I N + + R + V Q + G++R+NL D +W VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455
A+ S KG T + IAHR+ST+++ D+I ++ G + G L+ +++ +V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 154 bits (391), Expect = 9e-43
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L +S S++A G G GKS++ + + T G I G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 673 SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I +V Q I++GTIR+N+ +G +Y + + L + M +GE+
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
GV +SGGQR RLA+ARA I MLD+ +++D++ + + M +T ++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA--LDSLMKGRTTLVI 194
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
H + I AD + ++KGQ+ G +L LY+ + S
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 206 bits (525), Expect = 3e-60
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 24/276 (8%)
Query: 1191 VSLERVLEYMDVPQEELCGYQSLSPD----WPFQGLIEFQNVTMRYKPSLPAALHDINFT 1246
+ +E V + + EL S + + F ++ + P L +IN
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1247 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1306
IE G + I G TG+GK+S+L + G I GR + Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------GRVSFCSQF 105
Query: 1307 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1364
++ G++++N+ D+ + SV++ C +++++ T + E G++ S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1365 LICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNMD 1423
I LARA+ K + + LD +D T + ++ + T I + ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1424 EILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
+ILIL G G L S + T
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 261
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 188 bits (480), Expect = 3e-54
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
GTI++NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQRAR++LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RAVY +D+Y+LD +D + + + M KTRIL T ++ + AD +++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVF-ESCVCKLMANKTRILVTSKMEHLRKADKILI 229
Query: 806 MDKGQVKWIGSSADL---AVSLYSGFWSTNEFD 835
+ +G + G+ ++L S + FD
Sbjct: 230 LHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 148 bits (376), Expect = 6e-41
Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 22/234 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 55
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
G + L A + Q + + H +D + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR------TELLNDV 109
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSS-------KVLCLDECTANVDAQTAS 1394
A+ L+ + S S G+ Q + LA +L+ + ++L LDE ++D S
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
L +S+ +G+ ++ +H ++ L +L G ++ G + +L
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (226), Expect = 5e-21
Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 37/219 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +S + G ++ ++G G+GKS+LL + G M GSI +G
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
AY+ Q + + ++ + ++ A LD +G
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGR 121
Query: 730 KGVNLSGGQRARLALARAVYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
LSGG+ R+ LA V + +LD+ ++++D + +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQ 180
Query: 783 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ +H++ + A ++ G++ G ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 143 bits (361), Expect = 8e-39
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 11/233 (4%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1280 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEK 1335
+LVDG + + R + ++ Q L ++ N+ D+ V +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E + VGL + S GQ+Q + +ARAL + KVL DE T+ +D T
Sbjct: 121 --VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1396 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ + + G+T++ I H + V + D + ++ +G L+EQ +
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 4e-26
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG-GDMA-- 725
I + Q +L S T+ N+ D E + T ++ +VG GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLGDKHDS 136
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y LSGGQ+ R+A+ARA+ + + D+ SA+D R IL L
Sbjct: 137 YPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 786 TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T +L TH + D V V+ G++ + +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 139 bits (353), Expect = 7e-38
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 11/229 (4%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I+ +NVT YK AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1280 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1333
++ +D + + +L R + V Q L + +N++ P +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1334 EKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
+ E ++ L E F S GQ+Q + +ARAL + ++ D+ T +D++T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1393 ASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1439
+ + + G TV+ + H I+ + I+ L G + +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 1e-28
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
EE L V+L + +G V+++G GSGKS++LN I T G ++
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 673 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I +V Q ++ T +N+ + + + ++ M
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
+ + K LSGGQ+ R+A+ARA+ + I + D A+D++ I+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
KT ++ TH++ + ++ + G+V+
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 139 bits (351), Expect = 2e-37
Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 10/227 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+ T + ++V QS ++ ++ +N+ + ++ V+
Sbjct: 65 FGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWA 120
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
E + +E + S GQRQ + +ARA++ VL +DE +N+DA+ ++ I
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 1402 SECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ +T I + H + M D I +++ G L++ G+P +
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (293), Expect = 9e-30
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673
+N+++L + G + ++G G GK++ L I G T G I+ +
Sbjct: 20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
I+ V Q + T+ +NI F E K V + + +
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR----VRWAAELLQIEELLNRYPA 135
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQR R+A+ARA+ D+ ++D+ LS +DA++ + + L+ T I TH
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 793 NVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ A++ D + VM++GQ+ IGS ++
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 138 bits (350), Expect = 5e-37
Identities = 55/253 (21%), Positives = 108/253 (42%), Gaps = 21/253 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1283 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK 1328
V+G NI +D LR R +V Q L+ ++ +N+ + L
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLG 119
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ + + + VG++ + S GQ+Q + +ARAL VL DE T+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 1388 VDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+D + +L+ +G T++ + H + ++ ++ L G + E+G+P+ + +
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
Query: 1446 ECSVFS-SFVRAS 1457
S F++ S
Sbjct: 240 PQSPRLQQFLKGS 252
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 4e-25
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 33/226 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
+ VL VSL G ++++IG GSGKS+ L I + G+I +G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 673 ---------------SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVD 715
+ V Q + S T+ +N++ S + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA---LK 131
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
VG D G+ V+LSGGQ+ R+++ARA+ D+ + D+ SA+D ++ +L
Sbjct: 132 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-R 190
Query: 776 AIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ KT ++ TH + A + V+ + +G+++ G +
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 131 bits (330), Expect = 1e-34
Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ +V + A+ +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1282 LVDGLNII----NTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1336
+ + V A+V QS L+ ++ DN+ + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR- 119
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
V+E E +GL + S GQRQ + L RA+++ +V +DE +N+DA+ +
Sbjct: 120 -VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 1397 QNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ + G+T I + H + M D I +++ G L + G+P +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (257), Expect = 6e-25
Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI-------A 675
+ + ++SL + G + ++G G GK++ L I G + G I+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISLMVGGDMAYI 727
+VP ++ + L+ + + LK + +++ ++G + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG--LTEL 132
Query: 728 GEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQR R+AL RA+ ++++D+ LS +DA++ + + L T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 787 RILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
I TH+ A++ D + VM++G ++ +GS ++
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (329), Expect = 1e-34
Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G + +++ R L I+F IE G G++G GAGK++ L + L G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ V G N++ P ++R + +P+ N+ + + ++E
Sbjct: 59 VTVFGKNVVEEP-HEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEE 112
Query: 1341 EVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
VE GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 1397 QNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ + + G+T++ +H + V + D I ++ +G +VE G + L +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74
Query: 674 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I+Y+P+ + + F + S SE + V+ + + G I ++
Sbjct: 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM----VERATEIAGLGEKIKDR 130
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
S G +L +ARA+ + +LD+ S +D AR + + T ++
Sbjct: 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQEGLTILVS 189
Query: 791 THNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+HN+ D + ++ G + G+ +L
Sbjct: 190 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 1e-34
Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 17/239 (7%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ +N+ + AL ++ ++ G I+G G+GKS+++N + G++
Sbjct: 4 ILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1282 LVDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNL-------DPFHMNDDLKIWSV 1332
+ +I N +L Q+P + ++ +NL +N +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1333 LEKCHVKEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
++ + E+ E + L S GQ +L+ + RAL+ + K++ +DE A V
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1389 DAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
A + N + KG+T + I HR+ VLN D + ++ +G ++ +G + +++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 3e-26
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 673 ---SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL---------KACTLDVDISLM 719
I Q P L T+ +N+L G+ +S +L + L
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
K LSGGQ + + RA+ + ++D+ ++ V +A I N ++
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLE 195
Query: 780 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLAVSLYS 826
T ++ H + ++ D + VM GQ+ G + ++ S
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 130 bits (327), Expect = 2e-34
Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1282 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+ +G +I N P + A+VP+ +F ++ +NL N K +++
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEW 121
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
L+ +K+ G + S G++Q++ + RAL+ K+L +DE + + S +
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 1400 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1446
I + G T++ + L + +L+ G +V +G LL +E
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 102 bits (256), Expect = 7e-25
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------- 668
+ + L +P+G +V +IG G+GK++ L++I G + G I
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 669 HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ G T+ +N++ G I + +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----EWIFSLFPRLKERLK 134
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
+ G LSGG++ LA+ RA+ + M+D+ + + + I + T +
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV-FEVIQKINQEGTTIL 193
Query: 789 LCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L N A+ A V++ GQ+ G +++L
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 127 bits (320), Expect = 2e-33
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 10/227 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ QNVT + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+ + +TP +V QS L+ S+ +N+ K + ++ V +
Sbjct: 59 IGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--VNQV 114
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
E + L + + S GQRQ + + R L+ V LDE +N+DA ++ IS
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 1402 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ G T+I + H + + D+I++LD G + + G P L
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
+ VV ++L + +G V +G G GKS+LL I G +T G +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 673 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q + ++ +N+ FG + ++ +
Sbjct: 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 130
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQR R+A+ R + +++LD+ LS +DA + + L +T I
Sbjct: 131 ---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 791 THNV-QAISAADMVVVMDKGQVKWIGSSADL 820
TH+ +A++ AD +VV+D G+V +G +L
Sbjct: 188 THDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 124 bits (311), Expect = 2e-32
Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
L+DG T + + A V Q+ LF ++ +++ + + V +
Sbjct: 58 LLDG--KDVTDLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDT 111
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
+ +E + + ++ S G++Q + LARAL+ + K+L LDE + +D +T + +S
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 1402 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ +TV+ I H + M D I ++ G L++ G P+ + +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N L+ +SL + G ++G G+GK+ L I G + G I G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 673 SIAYVPQVPWILSG-TIRDNILF----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
IA+V Q + ++ N+ F K DP+ +T + + +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLL 121
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + + T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ TH+ A AD + V+ G++ +G ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 119 bits (300), Expect = 1e-30
Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1282 LVDGLNIINTPVRDLRGRF---AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1337
D + + + +V Q+ L+ + +N+ N + + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-- 120
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V+E + + + + S Q+Q + LARAL+K +L LDE +N+DA+ +
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 1398 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1445
+ G+T++ ++H + + + D + +L G LV+ G P+ L +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 95.9 bits (238), Expect = 2e-22
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V L+ V++ + G ++G G+GK++ + I G + + G ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 673 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I V Q + T +NI F S E K V+ + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR----VEEVAKILDIHHVL 134
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSG Q+ R+ALARA+ + +LD+ S +DA++ + L T
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
++ +H+ + AD V V+ KG++ +G DL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 115 bits (290), Expect = 9e-30
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1223 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+E +++++ Y KP L I TIE G V G G GK+++L + G+I
Sbjct: 3 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ +G P+ ++G+ +P+ + S+ D L +K+ K + +
Sbjct: 59 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMD 109
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+E+V + K+ S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 110 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 168
Query: 1401 SSECK--GMTVITIAHRISTVLNMDEILIL 1428
K G+ +I+ +S D L
Sbjct: 169 LEILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 87.7 bits (217), Expect = 4e-20
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 19/194 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 676 YVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734
++P+ + ++ D + + ++ L+ V + + +K L
Sbjct: 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE-----SVE--VLDLKKKLGEL 126
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
S G R+ LA + ++IY+LDD + A+D +L + + I
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE- 185
Query: 795 QAISAADMVVVMDK 808
+S D+ + K
Sbjct: 186 --LSYCDVNENLHK 197
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 109 bits (274), Expect = 3e-27
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
+++F + ++G TGAGKS L + + G++ ++G +I TP+ R
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1302 VVPQSPFLFE--GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1359
VPQ LF R+ + ++ V+E E +G+ + S
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERD-----RRVREMAEKLGIAHLLDRKPARLS 128
Query: 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRIS 1417
G+RQ + LARAL+ ++L LDE + VD +T +L + + ++ + H +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1418 TVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1459
+ DE+ ++ +G +VE+G + L + + F+ A +
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.1 bits (223), Expect = 2e-20
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 21/210 (10%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N LN V + + ++G G+GKS L I G + G + +G
Sbjct: 13 NFRLN-VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
I +VPQ + ++ NI +G + + V G + K
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR------VREMAEKLGIAHLLDRKP 124
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGG+R R+ALARA+ + +LD+ LSAVD + ++ + T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 792 HNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
H++ A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 77.7 bits (190), Expect = 8e-17
Identities = 18/185 (9%), Positives = 37/185 (20%), Gaps = 26/185 (14%)
Query: 1253 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1312
+ I G G GK++++ + + + T R +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1313 SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372
+++ + A
Sbjct: 63 FFTSKKLVGSYGVNVQYF--------------------------EELAIPILERAYREAK 96
Query: 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
KV+ +DE + V+ + EI L
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
Query: 1433 LVEQG 1437
L+E
Sbjct: 157 LIELT 161
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 66.9 bits (162), Expect = 5e-13
Identities = 15/178 (8%), Positives = 40/178 (22%), Gaps = 17/178 (9%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYD 699
+ + GE G GK++L+ I+ + +RD +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTGF 47
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
+E K + + + A A + ++D+
Sbjct: 48 RIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 817
+ ++ H + + + + +
Sbjct: 108 I--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 16/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)
Query: 1253 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1312
V + G G GK+++++ + G + + R + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1313 SLRDNLDPFHMNDDLKIWSVLEK--------CHVKEEVEAVGLETFVKESGISFSVGQRQ 1364
+ + L + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1415
I R L + + L + ++++ + + + +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 33/307 (10%), Positives = 84/307 (27%), Gaps = 10/307 (3%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 335
Y Y ++ ++ I PLL+ I + + D V + + + L F
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+ + L +S + + + V + ++ +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
+ I + + + F + +T+ + + + + ++ K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 456 RIRRTGEILTHIR---------TLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506
R + E+ + + + T TR ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 507 FWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISI 566
T + G + + + + + L PL L +F S+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 567 RRLTRFL 573
R+ + +
Sbjct: 312 DRVFQLI 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 3/300 (1%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSF 334
+ I G+ ++N + LL L+ F + L L + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 335 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN 394
+ + Y K+ + + + V ++ + + + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 395 SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKD 454
IG+ + + Y + + + + I+ I + + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 455 ERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL 514
+ H L G E + + ++ +
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 515 FSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 573
+ F + L A + + +L+ PL S V + + L L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1253 VGIVGRTGAGKSSILNALFR------------LTPICGGQILVDGLNIINTPVRDLRGRF 1300
VG+VG GKS++L+ + L P G DG + + DL G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVM---ADLPGLI 60
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
Q L LR + + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP 97
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
VAV GE GSGKSS +N++ G G+
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 39.4 bits (91), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668
L LP+ + V+G SGKSS+L +I+G L GS
Sbjct: 22 LDLPQ---IVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
L LP+ +AV+G +GKSS+L + +G L GS +
Sbjct: 24 LDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1253 VGIVGRTGAGKSSILNAL 1270
VG+VG AGKSS+L A+
Sbjct: 4 VGLVGYPNAGKSSLLAAM 21
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1459 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.6 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.28 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.98 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.59 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.57 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.39 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.36 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.1 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.58 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.5 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.43 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.39 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.08 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.03 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.92 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.37 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.0 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.8 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.76 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.66 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.26 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.19 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.15 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.96 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.96 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.95 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.84 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.59 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.59 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.54 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.35 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.33 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.22 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.21 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.1 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 92.83 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.81 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.74 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.58 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.5 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.45 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.43 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 92.37 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.36 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.21 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.21 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.2 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.17 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.16 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.04 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.94 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.73 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.68 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.6 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.56 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 91.54 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.48 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.47 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.45 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.43 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.26 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.09 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.0 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.99 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.89 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.83 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.71 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.67 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.58 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.54 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.49 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.48 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.47 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.41 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.13 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.13 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.11 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.09 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.06 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.03 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.0 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 89.95 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 89.91 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.8 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.79 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 89.74 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 89.71 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 89.59 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.47 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.34 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.1 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.08 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.02 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.0 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 88.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 88.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.88 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.88 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.78 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.67 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.54 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.37 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 88.34 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.28 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.15 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.14 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.06 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 87.99 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.92 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.88 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 87.8 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.79 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.72 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 87.7 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.6 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.58 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.57 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.57 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.43 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 87.39 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.35 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.2 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.18 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.13 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.11 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.01 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.0 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 86.99 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 86.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 86.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.75 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 86.69 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.68 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.59 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.59 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.52 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 86.52 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.48 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.47 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.35 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.28 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 86.28 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 86.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.19 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.16 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.12 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.09 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.07 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.99 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.96 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.89 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 85.81 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.69 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.42 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.37 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 85.31 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 85.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 85.06 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.74 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 84.73 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.6 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.56 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 84.51 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.48 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.41 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 84.38 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 84.35 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.28 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 84.21 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.12 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.03 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 84.02 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 84.02 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.92 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 83.73 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.71 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 83.47 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 83.39 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.25 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.09 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.03 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 83.01 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 83.01 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.99 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 82.99 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.93 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 82.88 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 82.85 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.81 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.8 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 82.74 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 82.71 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.67 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 82.66 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 82.62 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 82.58 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 82.45 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 82.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 82.38 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.35 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.3 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 82.24 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 82.2 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 82.11 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 81.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 81.86 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 81.85 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 81.72 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.63 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.58 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 81.58 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 81.5 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.4 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.29 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 81.26 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 81.25 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.19 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.16 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 81.07 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.05 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.04 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 81.02 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 80.88 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 80.85 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 80.82 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 80.57 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 80.48 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.39 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 80.37 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 80.33 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 80.24 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 80.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 80.14 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 80.09 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 80.05 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=481.90 Aligned_cols=237 Identities=35% Similarity=0.560 Sum_probs=228.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899996699895201124997489199998899984899999984369899866999797489999577715628
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.|||.|++.++.+.+|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9807776777547883186999-9927789999990099999968--994054169999993599999999987249977
Q 000503 1302 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1302 ~IpQdp~lf~gTIR~NLdp~~~-~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlLr~~~I 1378 (1459)
+|||+|++|+||||+|+.++.+ .++++++.+++.+++.+.+..+ |+++.+++.|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHC
Q ss_conf 99856676989997999999999835994799852581367530979999298598956935785029938999998508
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1458 (1459)
Q Consensus 1379 LiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~g 1458 (1459)
+|||||||++|+.|++.|.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|++++++.|++|++.+.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998299878999999813
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=481.25 Aligned_cols=241 Identities=31% Similarity=0.533 Sum_probs=230.2
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99840899989999669989520112499748919999889998489999998436989986699979748999957771
Q 000503 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297 (1459)
Q Consensus 1218 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR 1297 (1459)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5628980777677754788318699-99927789999990099999968--99405416999999359999999998724
Q 000503 1298 GRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1298 ~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlLr 1374 (1459)
+++++|||+|.+|+||||+|+..+. ..+|++++++++.+++.+++..+ |+|+.+++.|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 99779985667698999799999999983599479985258136753097999929859895693578502993899999
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1454 (1459)
+|+|+|||||||++|.+|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|+|.|+|+||++++ +.|++||
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~-~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998999837654479779999999999875388899996899999859999999899999988999998688-4999999
Q ss_pred HHHCC
Q ss_conf 85089
Q 000503 1455 RASTM 1459 (1459)
Q Consensus 1455 ~~~g~ 1459 (1459)
+.+.+
T Consensus 251 ~~Q~l 255 (255)
T d2hyda1 251 SIQNL 255 (255)
T ss_dssp TTTTC
T ss_pred HHCCC
T ss_conf 97479
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=470.17 Aligned_cols=238 Identities=34% Similarity=0.535 Sum_probs=227.6
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 98408999899996699895201124997489199998899984899999984369899866999797489999577715
Q 000503 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298 (1459)
Q Consensus 1219 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1298 (1459)
..|.|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 62898077767775478831869--999927789999990099999968--99405416999999359999999998724
Q 000503 1299 RFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1299 ~i~~IpQdp~lf~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlLr 1374 (1459)
+++++||+|.+|++|+++|+..+ ...++++++++++.+++.++++.+ |||+.+++.|.+||||||||+|||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 99779985667698999799999999983599479985258136753097999929859895693578502993899999
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1454 (1459)
+|+|+|||||||++|++|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|++|++++ +.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~-~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998899516444589889999999998752278899998879999859999999899999988999998689-3999999
Q ss_pred HHH
Q ss_conf 850
Q 000503 1455 RAS 1457 (1459)
Q Consensus 1455 ~~~ 1457 (1459)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=461.72 Aligned_cols=239 Identities=31% Similarity=0.453 Sum_probs=223.4
Q ss_pred CCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 9998408999899996699-895201124997489199998899984899999984369899866999797489999577
Q 000503 1217 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD 1295 (1459)
Q Consensus 1217 wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~ 1295 (1459)
++.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHCCCEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 71562898077767775478831869--999927789999990099999968--99405416999999359999999998
Q 000503 1296 LRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1371 (1459)
Q Consensus 1296 lR~~i~~IpQdp~lf~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARA 1371 (1459)
+|+++++|||+|.+|++|+++|+..+ ...++++++++.+++++.++++.+ |+++.+++.|.+||||||||++||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf 7249977998566769899979999999998359--94799852581367530979999298598956935785029938
Q 000503 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSV 1449 (1459)
Q Consensus 1372 lLr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~ 1449 (1459)
++++|+|+|||||||++|+.|+..|++.|++..+ ++|+|+||||++.+..||+|+||++|+|+|.|+|+||++++ +.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~-~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT-SH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CH
T ss_conf 45687078716757656853689999999997650698999995979999859999999899999988999998597-58
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q 000503 1450 FSSFVRA 1456 (1459)
Q Consensus 1450 f~~l~~~ 1456 (1459)
|++|+++
T Consensus 245 y~~l~~A 251 (251)
T d1jj7a_ 245 YWAMVQA 251 (251)
T ss_dssp HHHHHCC
T ss_pred HHHHHCC
T ss_conf 8999629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=465.79 Aligned_cols=233 Identities=32% Similarity=0.551 Sum_probs=221.3
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998952011249974891999988999848999999843698998669997974899995777156289
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++||+|+|+++ +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred EECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8077767775478831869--999927789999990099999968--994054169999993599999999987249977
Q 000503 1303 VPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1459)
Q Consensus 1303 IpQdp~lf~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlLr~~~I 1378 (1459)
|||+|.+|++|+|+|+..+ ...++++++++++.+++.+++..+ ++++.+++.|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 9985667698999799999999983599479985258136753097999929859895693578502993899999850
Q 000503 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1457 (1459)
Q Consensus 1379 LiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~ 1457 (1459)
+|||||||++|.+++..|++.|++..+++|+|+|+||++.+..||+|+||++|+|+|.|+|+||++++ +.|++|++++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~-~~y~~l~~~Q 238 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSEQ 238 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC-HHHHHHHHCC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-HHHHHHHHHH
T ss_conf 99658865569889999988788871799899997879999849999999899999999999998689-6999999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=408.31 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=201.3
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------ 672 (1459)
.|+|+|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 1 eI~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEEESSTTS-CEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CEEEEEEEEEECCCC-CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHH
T ss_conf 929999999908999-603---7424899849999999999999899999999735788888999999994400246553
Q ss_pred -CEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf -0999858987778778898625999-99788999999842115574106997530267976567089999999998814
Q 000503 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 673 -~iayv~Q~pwl~n~TIreNIlfg~~-~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 750 (1459)
.|+||+|+||++++||+|||.++.+ .+.+++..+++.|.+.+++..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 52889824465578400035223575543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99988870775441499999999994208456896599973782012108989999398599932977887400
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 824 (1459)
Q Consensus 751 ~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~ 824 (1459)
+|+|+|||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++++.++.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRN-MHK-ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHH-HHH-HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6513556477655598999999999-999-85899899997889999849999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=411.17 Aligned_cols=222 Identities=28% Similarity=0.401 Sum_probs=205.2
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98459997225860578853335540000147409969999968998478999998638557870899709---------
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g--------- 672 (1459)
....|+++|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||++.|+|.+++++|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCEEEEEEEEEEECCCC-CCC---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 788799998899959999-760---6443899839989999889998099999999712786300015399875307888
Q ss_pred ----CEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----0999858987778778898625999-99788999999842115574106997530267976567089999999998
Q 000503 673 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 673 ----~iayv~Q~pwl~n~TIreNIlfg~~-~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARA 747 (1459)
.|+||+|+|+++++||||||.||.+ .++++..++++.|++.+++..+|+|.+|.+|++|.+|||||||||+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 81499988870775441499999999994208456896599973782012108989999398599932977887400257
Q 000503 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSG 827 (1459)
Q Consensus 748 lY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~ 827 (1459)
+|.+|+|++||||+|+||+++++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++|+.+..+.+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~-l~~-l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEA-LDV-LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHH-HHH-HTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 8559989998376544797799999999-998-75388899996899999859999999899999988999998688499
Q ss_pred CC
Q ss_conf 65
Q 000503 828 FW 829 (1459)
Q Consensus 828 ~~ 829 (1459)
.+
T Consensus 247 ~~ 248 (255)
T d2hyda1 247 EH 248 (255)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=404.62 Aligned_cols=223 Identities=28% Similarity=0.391 Sum_probs=206.2
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98459997225860578853335540000147409969999968998478999998638557870899709---------
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g--------- 672 (1459)
....|+++|++|+|+..+ .+. |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCEEEEEEEEEEEECCCC-CCE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 830799998899929999-763---5332899859999999999998599999998621688846898788012111066
Q ss_pred ----CEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----099985898777877889862599--99978899999984211557410699753026797656708999999999
Q 000503 673 ----SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1459)
Q Consensus 673 ----~iayv~Q~pwl~n~TIreNIlfg~--~~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 746 (1459)
.++||+|+|+++++|+++|+.++. .++.+++.++++.|.+.++++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 88149998887077544149999999999420845689659997378201210898999939859993297788740025
Q 000503 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYS 826 (1459)
Q Consensus 747 AlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~ 826 (1459)
|++.+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++++.++.+.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 243 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHH-HHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 99549988995164445898899999999-987-5227889999887999985999999989999998899999868939
Q ss_pred CCCC
Q ss_conf 7655
Q 000503 827 GFWS 830 (1459)
Q Consensus 827 ~~~~ 830 (1459)
+.++
T Consensus 244 y~~l 247 (253)
T d3b60a1 244 YAQL 247 (253)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=396.84 Aligned_cols=223 Identities=24% Similarity=0.307 Sum_probs=201.4
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98459997225860578853335540000147409969999968998478999998638557870899709---------
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g--------- 672 (1459)
-+..|+++|++|+|+...+.++ |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~ 84 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHR 84 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH
T ss_pred CCCEEEEEEEEEECCCCCCCEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHH
T ss_conf 5336999998998899999976---7443899849989999999998499999998614378768998899853110137
Q ss_pred ----CEEEECCCCCCCCCCHHHHHCCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----09998589877787788986259999--978899999984211557410699753026797656708999999999
Q 000503 673 ----SIAYVPQVPWILSGTIRDNILFGKNY--DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1459)
Q Consensus 673 ----~iayv~Q~pwl~n~TIreNIlfg~~~--d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 746 (1459)
.++||+|+|+++++||+|||.+|... +.++..+..+.+++.+.++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 85 ~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 85 YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp HHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEE
T ss_conf 88877654045650027634655454210130278899999999899999856121113675167668954704899860
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8814999888707754414999999999942084568--96599973782012108989999398599932977887400
Q 000503 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 824 (1459)
Q Consensus 747 AlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~ 824 (1459)
|++++|+|++||||+|+||+++++.|++. +.. +.+ ++|+|++||+++.+..||+|++|++|+|+++|+++|+.++.
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~-l~~-l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQL-LYE-SPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHT-CGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 44568707871675765685368999999-999-7650698999995979999859999999899999988999998597
Q ss_pred CCCCC
Q ss_conf 25765
Q 000503 825 YSGFW 829 (1459)
Q Consensus 825 ~~~~~ 829 (1459)
+.+.+
T Consensus 243 ~~y~~ 247 (251)
T d1jj7a_ 243 GCYWA 247 (251)
T ss_dssp SHHHH
T ss_pred CHHHH
T ss_conf 58899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=394.34 Aligned_cols=214 Identities=36% Similarity=0.635 Sum_probs=197.8
Q ss_pred CCEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
Q ss_conf 84599972258605788533355400001474099699999689984789999986385578708997090999858987
Q 000503 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1459)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pw 682 (1459)
+..+.+++.+|. ..|+ |+|+||+|++|++++|+||+|||||||+++|+|.+++++|+|.++|+++|++|.||
T Consensus 36 ~~~i~~~~~~~~-----g~pv---L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~ 107 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPV---LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 107 (281)
T ss_dssp ----CHHHHHHT-----TCEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCC
T ss_pred CCCEEEEECCCC-----CCEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
T ss_conf 896799976989-----9767---73759998599999999899982999999995797478828999999999816430
Q ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 77877889862599999788999999842115574106997530267976567089999999998814999888707754
Q 000503 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762 (1459)
Q Consensus 683 l~n~TIreNIlfg~~~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~S 762 (1459)
++++||+|||.||..+++.+++.++++|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||+|
T Consensus 108 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 108 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp CCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 26760321420333456057999999977699998461233235555423779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 414999999999942084568965999737820121089899993985999329778874002
Q 000503 763 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 825 (1459)
Q Consensus 763 aLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~ 825 (1459)
+||+.+.+.|++.++.. +.+++|+|++||+++.+..||+|++|++|++++.|+++|++....
T Consensus 188 ~LD~~~~~~i~~~~~~~-~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~ 249 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 249 (281)
T ss_dssp SSCHHHHHHHHHHCCCC-CTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHH-HHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCC
T ss_conf 48989999999999988-628999999925289998599999998999999878999960594
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=397.37 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=200.4
Q ss_pred EEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9997225860578853335540000147409969999968998478999998638557870899709-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------- 672 (1459)
++++|++|+|+.+ +++ |+|+||++++|+.++|+||+|||||||++.|+|.++|++|+|.++|
T Consensus 2 le~knvsf~Y~~~--~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp EEEEEEEECSSSS--SCS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEECCCC--CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH
T ss_conf 7999889987999--841---42258998599999999999997999999999960989877988998844246788874
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 099985898777877889862599--999788999999842115574106997530267976567089999999998814
Q 000503 673 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 673 ~iayv~Q~pwl~n~TIreNIlfg~--~~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 750 (1459)
.|+||+|+|+++++||||||.++. ..+++...++++.+.+..++..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36797566545785345430124455542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCCCC
Q ss_conf 9998887077544149999999999420845689659997378201210898999939859993297788740025765
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFW 829 (1459)
Q Consensus 751 ~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~~~ 829 (1459)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+.++.+.+.+
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~ 233 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKA-LDS-LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHH-HHH-HHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHH
T ss_conf 9989996588655698899999887-888-7179989999787999984999999989999999999999868969999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=388.51 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=196.7
Q ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 84089998999966998952011249974891999988999848999999843698998669997974899995777156
Q 000503 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1459)
Q Consensus 1220 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1459)
.+.|.|+|+++. ..|||+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 896799976989----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 2898077767775478831869999927789999990099999968--99405416999999359999999998724997
Q 000503 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1300 i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ 1377 (1459)
++++||+|.+|++|+|+|+.++...++.+++++++.+++.+.+..+ ++++.+++.|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 7998566769899979999999-9983599479985258136753097999929859895693578502993899999
Q 000503 1378 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1378 ILiLDEaTS~lD~~Te~~i~~~-i~~~f~~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1454 (1459)
|+|||||||++|+.++..+.+. +....+++|+|+|+||++.+..||||++|++|+|++.|+|+||++..+ .|.+.+
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~-~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP-DFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCH-HHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCC-HHHHHH
T ss_conf 51333855448989999999999988628999999925289998599999998999999878999960594-899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-41 Score=350.70 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=193.6
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899996699895201124997489199998899984899999984369899866999797489999577715628
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+. ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EEECCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 98077767775-47883186999---992778999999009999996899405416999999359999999998724997
Q 000503 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1302 ~IpQdp~lf~g-TIR~NLdp~~~---~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ 1377 (1459)
+|||+|.+|+. |+++|+..+.. .+.+++.+.. .+..+.+||+...+.....||||||||++|||||..+|+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 980033534222099999999987399999999999-----999987598556609954699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHHH
Q ss_conf 799856676989997999999999835--99479985258136753-0979999298598956935785029938999
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1452 (1459)
Q Consensus 1378 ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~ 1452 (1459)
||+||||||++|+.+...+++.|++.. .++|+|+|+|+++.+.. ||||++|++|+|++.|+|+++.++|...|-+
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~ 234 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
T ss_conf 243068866689899989999999998731980799948999999869999999899999985999998689998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-41 Score=352.21 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=188.0
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998952011249974891999988999848999999843698998669997974899995777156289
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++|++.+|+. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+.+.+.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred EECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8077767775-478831869----99992778999999009999996899405416999999359999999998724997
Q 000503 1303 VPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1459)
Q Consensus 1303 IpQdp~lf~g-TIR~NLdp~----~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ 1377 (1459)
|||++.+|+. |++||+..+ +...++++.++++.+ |++.........||||||||++|||||+.+|+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL---------KIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT---------TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH---------CCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCC
T ss_conf 512111174665778888877640553899999999982---------56555758955479998401403043443677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 799856676989997999999999835--99479985258136753-09799992985989569357850299389
Q 000503 1378 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1450 (1459)
Q Consensus 1378 ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f 1450 (1459)
||+||||||++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|.+|++++.|+|++++++|...+
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 1443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.1e-42 Score=354.60 Aligned_cols=225 Identities=25% Similarity=0.355 Sum_probs=191.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 08999899996699895201124997489199998899984899999984369899866999797489999---577715
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1298 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~ 1298 (1459)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 62898077767775-4788318699---9992778999999009999996899405416999999359999999998724
Q 000503 1299 RFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1299 ~i~~IpQdp~lf~g-TIR~NLdp~~---~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr 1374 (1459)
++++|||+|.+|+. |++||+...- ..+.++..+. ..+..+.+||+...+.....||||||||++|||||..
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~ 157 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999-----9999866591766648954599999858998757760
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 997799856676989997999999999835--99479985258136753-097999929859895693578502993899
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~ 1451 (1459)
+|+||++|||||++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++.++|...|-
T Consensus 158 ~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 46614544786679989988998999999863598799997999999996999999989999998699999868999799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.2e-41 Score=350.64 Aligned_cols=219 Identities=22% Similarity=0.329 Sum_probs=188.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 08999899996699895201124997489199998899984899999984369899866999797489999577----71
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----LR 1297 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----lR 1297 (1459)
.|+++||+++|.. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCEEEECCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 562898077767775-478831869---9999277----89999990099999968994054169999993599999999
Q 000503 1298 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1298 ~~i~~IpQdp~lf~g-TIR~NLdp~---~~~sd~e----i~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LA 1369 (1459)
+++++|||+|.+|+. |+++|+... ...+.++ +.+.++.+ |+....+.....||||||||++||
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~---------~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL---------GLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------TCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCHHHHCCCHHHCCHHHHHHHHHH
T ss_conf 55120022122231011667633068772999899999999999875---------996676299334999999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 98724997799856676989997999999999835--99479985258136753-0979999298598956935785029
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1370 RAlLr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~ 1446 (1459)
|||..+|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+++|.|+|+|++++|
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P 231 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 99826998898258876569899989999999998636988999959999999969999999899999985999998289
Q ss_pred CCHHH
Q ss_conf 93899
Q 000503 1447 CSVFS 1451 (1459)
Q Consensus 1447 ~s~f~ 1451 (1459)
...|-
T Consensus 232 ~~~~~ 236 (240)
T d1g2912 232 ANTFV 236 (240)
T ss_dssp SBHHH
T ss_pred CCHHH
T ss_conf 99898
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-41 Score=350.69 Aligned_cols=216 Identities=27% Similarity=0.391 Sum_probs=187.4
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998952011249974891999988999848999999843698998669997974899995777156289
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
|+++||+++|++ ..+|+||||+|++||.+||+||||||||||++++.|+.+|++|+|.+||.|+++.+. .|+.+++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred EECCCCCCCC-CHHHHCCCCCC---CC----HHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8077767775-47883186999---99----2778999999009999996899405416999999359999999998724
Q 000503 1303 VPQSPFLFEG-SLRDNLDPFHM---ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1459)
Q Consensus 1303 IpQdp~lf~g-TIR~NLdp~~~---~s----d~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr 1374 (1459)
|||+|.+|+. |+++|+..+.. .+ ++++.++++.+++. .........||||||||++|||||+.
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~---------~~~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA---------HLLDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH---------HHHHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 433420264333788978999875998899999999999757886---------56648965699999999999999703
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 997799856676989997999999999835--99479985258136753-097999929859895693578502993899
Q 000503 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1451 (1459)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~ 1451 (1459)
+|++++|||||+++|+.+...+++.|++.. .++|+|+|+|+++.+.. ||||++|++|++++.|+|++++++|...|-
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHH
T ss_conf 99889975888788988998999999999874298799994899999996999999979999998089999738999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-41 Score=348.53 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=188.6
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899989999669989--5201124997489199998899984899999984369899866999797489999577---71
Q 000503 1223 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1459)
Q Consensus 1223 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1459)
|+++|++.+|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEEECCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 562898077767775-478831869---99992----7789999990099999968994054169999993599999999
Q 000503 1298 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1459)
Q Consensus 1298 ~~i~~IpQdp~lf~g-TIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LA 1369 (1459)
+++++|||+|-+|+. |+++|+... ...+. +++.++|+.+ ||+.........||||||||++||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v---------gL~~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV---------GLGDKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH---------STTTTTSSCBSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCCHHHHCCHHHCCHHHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976---------990355489434999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 987249977998566769899979999999998359--9479985258136753-0979999298598956935785029
Q 000503 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1370 RAlLr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~ 1446 (1459)
|||..+|++|++||||+++|+.+...|++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+|+|.|+|++++++|
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P 232 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 40105898687446556589888567999999998646978999838999999869999999799999987999997289
Q ss_pred CCHH
Q ss_conf 9389
Q 000503 1447 CSVF 1450 (1459)
Q Consensus 1447 ~s~f 1450 (1459)
...|
T Consensus 233 ~~~~ 236 (240)
T d3dhwc1 233 KTPL 236 (240)
T ss_dssp CCTT
T ss_pred CCHH
T ss_conf 9857
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.5e-40 Score=341.98 Aligned_cols=227 Identities=23% Similarity=0.352 Sum_probs=188.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 089998999966998952011249974891999988999848999999843698998669997974899995--------
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-------- 1293 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-------- 1293 (1459)
.|+++|++++|.. ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCCEEEECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHH-CCCCCCCHHH
Q ss_conf -----7771562898077767775-478831869----9999277899999900999999689940541-6999999359
Q 000503 1294 -----RDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQ 1362 (1459)
Q Consensus 1294 -----~~lR~~i~~IpQdp~lf~g-TIR~NLdp~----~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~-e~G~~LS~GQ 1362 (1459)
...|+++++|+|+|-+|+. |+++|+..+ ...+..+..+.. .+..+.+|+..... .....|||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKVGIDERAQGKYPVHLSGGQ 154 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHCCCCHHHHCCCCCCCCHHH
T ss_conf 17679997454489983323141101021365657876299989999999-----9999982995244306822056778
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHH
Q ss_conf 999999998724997799856676989997999999999835-99479985258136753-0979999298598956935
Q 000503 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1440 (1459)
Q Consensus 1363 rQll~LARAlLr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~ 1440 (1459)
+||++|||||..+|+++++||||+++|+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||.+|+|+|.|+|+
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ 234 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 88989999984399878852455568878888998765541036883389948999999869999999799999984999
Q ss_pred HHHCCCCCHHH-HHHH
Q ss_conf 78502993899-9998
Q 000503 1441 TLLQDECSVFS-SFVR 1455 (1459)
Q Consensus 1441 ~Ll~~~~s~f~-~l~~ 1455 (1459)
+++++|...|- +++.
T Consensus 235 ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 235 QVFGNPQSPRLQQFLK 250 (258)
T ss_dssp HHHHSCCSHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 9983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.5e-40 Score=341.95 Aligned_cols=213 Identities=25% Similarity=0.340 Sum_probs=177.9
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899989999669989--52011249974891999988999848999999843698998669997974899995777----
Q 000503 1223 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL---- 1296 (1459)
Q Consensus 1223 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l---- 1296 (1459)
|+++||+++|+.+.. .+|+||||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEEECCCCCCCC-CHHHHCCC---C---CCCCHHHHHHHHHHHCHHHHHHHCCCCHHH-HCCCCCCCHHHHHHHHH
Q ss_conf 1562898077767775-47883186---9---999927789999990099999968994054-16999999359999999
Q 000503 1297 RGRFAVVPQSPFLFEG-SLRDNLDP---F---HMNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICL 1368 (1459)
Q Consensus 1297 R~~i~~IpQdp~lf~g-TIR~NLdp---~---~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i-~e~G~~LS~GQrQll~L 1368 (1459)
|+++++|+|+|.+|+. |+++|+.. . ...+.++..+. ..+..+..||.... ...-..||||||||++|
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaI 156 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999-----99988762423455348802389999999998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHH
Q ss_conf 998724997799856676989997999999999835--994799852581367530979999298598956935
Q 000503 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1440 (1459)
Q Consensus 1369 ARAlLr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~ 1440 (1459)
||||..+|+||++|||||+||+.+...+++.|++.. .++|+|+|+|+++.+..||||++|++|+|+|.|+++
T Consensus 157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 75652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-39 Score=333.80 Aligned_cols=219 Identities=24% Similarity=0.386 Sum_probs=191.9
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 40899989999669989520112499748919999889998489999998436989986699979748999957771562
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1459)
Q Consensus 1221 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1459)
|.|+++|++.+|.. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 898077767775-4788318699---999277899999900999999689940541699999935999999999872499
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1459)
Q Consensus 1301 ~~IpQdp~lf~g-TIR~NLdp~~---~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~ 1376 (1459)
+++||++.+|+. |++||+..+. ..++.++++.+++. .+.++++......-..||+|||||++||||++.+|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 6750015468786677888989986179989999999999-----98679788885045337998989999999986599
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 7799856676989997999999999835-99479985258136753-09799992985989569357850299
Q 000503 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1447 (1459)
Q Consensus 1377 ~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~ 1447 (1459)
+|++|||||++||+.+...+++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|+++.++.+
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.6e-39 Score=332.52 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=185.2
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 408999899996699895201124997489199998899984899999984369899866999797489999577715-6
Q 000503 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG-R 1299 (1459)
Q Consensus 1221 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~-~ 1299 (1459)
--++++|++++|+. ..+|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEEECCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2898077767775-4788318699--99927789999990099999968-994054169999993599999999987249
Q 000503 1300 FAVVPQSPFLFEG-SLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1300 i~~IpQdp~lf~g-TIR~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~l-gLdt~i~e~G~~LS~GQrQll~LARAlLr~ 1375 (1459)
++++||++.+|+. |+++|+..+. ....++..+.++.+ ...+ +++...+.....||||||||++|||||..+
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 3556765545776369999998887327888999999999-----98741768887585433899999999999999829
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 97799856676989997999999999835-99479985258136753-0979999298598956935785029
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1446 (1459)
Q Consensus 1376 ~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~ 1446 (1459)
|++|+|||||+++|+.+...+.+.|++.. +++|+|+++|+++.+.. ||||+||++|++++.|+|+++++++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 9874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-39 Score=332.82 Aligned_cols=217 Identities=22% Similarity=0.356 Sum_probs=184.0
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-C
Q ss_conf 089998999966998952011249974891999988999848999999843698998669997974899995777156-2
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR-F 1300 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~-i 1300 (1459)
-++++|++.+|+. ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEEECCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHH
Q ss_conf 898077767775-47883186999----------------9927789999990099999968994054169999993599
Q 000503 1301 AVVPQSPFLFEG-SLRDNLDPFHM----------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1363 (1459)
Q Consensus 1301 ~~IpQdp~lf~g-TIR~NLdp~~~----------------~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQr 1363 (1459)
+++||+|.+|+. |++||+..... ..+++..+ + ..+.++.++++...+.....||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE---K--AFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH---H--HHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH---H--HHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 725776424788742321430133303450456654213532899999---9--99998761963020595356991888
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHH
Q ss_conf 99999998724997799856676989997999999999835-99479985258136753-09799992985989569357
Q 000503 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1441 (1459)
Q Consensus 1364 Qll~LARAlLr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~ 1441 (1459)
||++|||||..+|++|+|||||+++|+.+...+.+.|++.. +++|||+|+|+++.+.. ||||+||++|++++.|+|+|
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 89999999975927232439765699999999999999999789989999476999998699999996998999966899
Q ss_pred HHCC
Q ss_conf 8502
Q 000503 1442 LLQD 1445 (1459)
Q Consensus 1442 Ll~~ 1445 (1459)
+.++
T Consensus 237 ~~~~ 240 (254)
T d1g6ha_ 237 EIKN 240 (254)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 8654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-37 Score=319.60 Aligned_cols=219 Identities=24% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998952011249974891999988999848999999843698998669997974899995777156289
Q 000503 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1459)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1459)
+++ ++..+|..- .+ ||||++. +|.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |+++++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred EECCCCCCCC-CHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8077767775-478831869-99992778999999009999996899405416999999359999999998724997799
Q 000503 1303 VPQSPFLFEG-SLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1459)
Q Consensus 1303 IpQdp~lf~g-TIR~NLdp~-~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ILi 1380 (1459)
|||+|.+|+. |++||+... ...+..+..+. ..+.++.+|++...+.....||||||||++||||++.+|+|++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 52314435220155766653233677889999-----9999986383756657944489999899999877751677067
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 8566769899979999999998359--9479985258136753-097999929859895693578502993899999
Q 000503 1381 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1454 (1459)
Q Consensus 1381 LDEaTS~lD~~Te~~i~~~i~~~f~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1454 (1459)
||||||++|+.+...+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++++....+++
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 52865558879999999999999874397699981899999996999999989999999069998329988999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-36 Score=305.23 Aligned_cols=199 Identities=28% Similarity=0.390 Sum_probs=170.5
Q ss_pred EEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------CE
Q ss_conf 9997225860578853335540000147409969999968998478999998638557870899709-----------09
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g-----------~i 674 (1459)
|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++| .|
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 74 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCE
T ss_pred CEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEE
T ss_conf 999999999899---999---81117788699899999899982999999996587888888999999778886444322
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCCCC-------HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 998589877787-7889862599999-------78899999984211557410699753026797656708999999999
Q 000503 675 AYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1459)
Q Consensus 675 ayv~Q~pwl~n~-TIreNIlfg~~~d-------~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 746 (1459)
+||+|+|-++.. |++|||.|+.... +++.+++++...|.+..+.. ...||||||||++|||
T Consensus 75 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGR 143 (232)
T ss_dssp EEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHH
T ss_conf 23433420264333788978999875998899999999999757886566489-----------6569999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 881499988870775441499999999994208456--8965999737820121-0898999939859993297788740
Q 000503 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 747 AlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTH~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~~ 823 (1459)
|+..+|++++||||+|+||+.+.+.|++. +.. +. .++|+|++||+++... .||+|++|++|++++.|+.+++...
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 97039988997588878898899899999-999-9874298799994899999996999999979999998089999738
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.8e-35 Score=300.74 Aligned_cols=200 Identities=26% Similarity=0.360 Sum_probs=170.6
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------C
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709-----------0
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g-----------~ 673 (1459)
.|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++| .
T Consensus 6 ~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ 79 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79 (239)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCE
T ss_conf 4999879999999---999---8130678879989999999998299999999758999878799916413547700015
Q ss_pred EEEECCCCCCCC-CCHHHHHCCCCC---CCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999858987778-778898625999---9978----89999998421155741069975302679765670899999999
Q 000503 674 IAYVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1459)
Q Consensus 674 iayv~Q~pwl~n-~TIreNIlfg~~---~d~~----~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLA 745 (1459)
|+||+|+|-++. .|++||+.|+.. ++++ +.+++++.+.|++-.. .....|||||||||+||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHH
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHH
T ss_conf 8998003353422209999999998739999999999999998759855660-----------99546999998899997
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHH-HCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 98814999888707754414999999999942084568--96599973782012-1089899993985999329778874
Q 000503 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 746 RAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l-~~aD~Ii~l~~G~i~~~G~~~~l~~ 822 (1459)
||+..+|+|++||||+|+||+.+.+.|++- +.. +.+ ++|+|++||+++.. ..||+|++|++|+|+++|+.+++..
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 664049982430688666898999899999-999-987319807999489999998699999998999999859999986
Q ss_pred C
Q ss_conf 0
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 227 ~ 227 (239)
T d1v43a3 227 R 227 (239)
T ss_dssp C
T ss_pred C
T ss_conf 8
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2e-35 Score=301.83 Aligned_cols=200 Identities=27% Similarity=0.347 Sum_probs=171.3
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------ 672 (1459)
.|+++|.+++|+. .+. |+|+||++++|++++|+||+|||||||+++|.|...+++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 1899869999899---999---8560668869989999999998099999999648788989899999980356644424
Q ss_pred -----CEEEECCCCCCCCC-CHHHHHCCC---CCCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf -----09998589877787-788986259---99997----889999998421155741069975302679765670899
Q 000503 673 -----SIAYVPQVPWILSG-TIRDNILFG---KNYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1459)
Q Consensus 673 -----~iayv~Q~pwl~n~-TIreNIlfg---~~~d~----~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQk 739 (1459)
.|+||+|+|-++.. ||+|||.++ ...++ ++.+++++.+.|.+-... ....||||||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqk 145 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQR 145 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHH
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHH
T ss_conf 53225512002212223101166763306877299989999999999987599667629-----------9334999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECC
Q ss_conf 99999998814999888707754414999999999942084568--965999737820121-089899993985999329
Q 000503 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 740 qRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~-~aD~Ii~l~~G~i~~~G~ 816 (1459)
|||+||||+..+|++++||||+++||+.+...|++. +.. +.+ +.|+|++||+++... .||+|++|++|+|++.|+
T Consensus 146 QRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKK-LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 999999998269988982588765698999899999-999-986369889999599999999699999998999999859
Q ss_pred HHHHHHC
Q ss_conf 7788740
Q 000503 817 SADLAVS 823 (1459)
Q Consensus 817 ~~~l~~~ 823 (1459)
++|+..+
T Consensus 224 ~~el~~~ 230 (240)
T d1g2912 224 PDEVYDK 230 (240)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
T ss_conf 9999828
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-35 Score=302.85 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=172.9
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------ 672 (1459)
.|+++|.+.+|+.++ ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECCCC-EEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 899975799988999-899---8040789879989999989998099999999758688874599999995137311153
Q ss_pred ----CEEEECCCCCCCCC-CHHHHHCCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ----09998589877787-78898625999---997----8899999984211557410699753026797656708999
Q 000503 673 ----SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1459)
Q Consensus 673 ----~iayv~Q~pwl~n~-TIreNIlfg~~---~d~----~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkq 740 (1459)
+|+|++|+|-++.. ||+|||.|+.. .++ ++.+++++.+.|++.....| ..|||||||
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQ 147 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQ 147 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHH
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHH
T ss_conf 120451477304334666657777665567613799999999999986659176664895-----------459999985
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHH-HCCCEEEEEECCEEEEECCH
Q ss_conf 9999998814999888707754414999999999942084568--96599973782012-10898999939859993297
Q 000503 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSS 817 (1459)
Q Consensus 741 RIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l-~~aD~Ii~l~~G~i~~~G~~ 817 (1459)
||+||||+..+|+++++|||+|+||+.+...+++- +.. +.+ +.|+|++||+++.. ..||+|++|++|+|++.|++
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~-l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKE-VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHH-HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 89987577604661454478667998998899899-999-9863598799997999999996999999989999998699
Q ss_pred HHHHHC
Q ss_conf 788740
Q 000503 818 ADLAVS 823 (1459)
Q Consensus 818 ~~l~~~ 823 (1459)
+++...
T Consensus 226 ~el~~~ 231 (242)
T d1oxxk2 226 EDLYDN 231 (242)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999868
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2e-35 Score=301.96 Aligned_cols=198 Identities=25% Similarity=0.387 Sum_probs=171.4
Q ss_pred EEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------CE
Q ss_conf 9997225860578853335540000147409969999968998478999998638557870899709-----------09
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g-----------~i 674 (1459)
++++|.+++|.. .. |+|+||++++|++++|+||+|||||||+++|.|-+++++|+|.++| .+
T Consensus 2 i~v~nlsk~y~~----~a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~i 74 (229)
T d3d31a2 2 IEIESLSRKWKN----FS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (229)
T ss_dssp EEEEEEEEECSS----CE---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred EEEEEEEEEECC----EE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCC
T ss_conf 899989999499----78---84337898799899999899982999999996476888788999567346521657405
Q ss_pred EEECCCCCCCCC-CHHHHHCCCC----CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 998589877787-7889862599----99978899999984211557410699753026797656708999999999881
Q 000503 675 AYVPQVPWILSG-TIRDNILFGK----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1459)
Q Consensus 675 ayv~Q~pwl~n~-TIreNIlfg~----~~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY 749 (1459)
||++|+|-++.. ||+||+.|+. .-++++..++++...+.+..+ .....|||||||||+||||+.
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHH
T ss_conf 615121111746657788888776405538999999999825655575-----------895547999840140304344
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 4999888707754414999999999942084568--965999737820121-0898999939859993297788740
Q 000503 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 750 ~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~~ 823 (1459)
.+|+++|||||+|+||+.+.+.|++. +.. +.+ +.|+|++||+++... .||+|++|++|++++.|+++++..+
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREM-LSV-LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHH-HHH-HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 36771443478767998999999999-999-9864796899974999999996999999979999998699999868
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-35 Score=300.12 Aligned_cols=198 Identities=24% Similarity=0.327 Sum_probs=162.0
Q ss_pred EEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9997225860578853335540000147409969999968998478999998638557870899709-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------- 672 (1459)
|+++|.+++|+... ....+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 89990799948998--2089871337788499799998899998216557506887777662699999857688555123
Q ss_pred ----CEEEECCCCCCCCC-CHHHHHCCCC------CCC-HHHHHHHHH---HHCCHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf ----09998589877787-7889862599------999-788999999---84211557410699753026797656708
Q 000503 673 ----SIAYVPQVPWILSG-TIRDNILFGK------NYD-PQSYSETLK---ACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1459)
Q Consensus 673 ----~iayv~Q~pwl~n~-TIreNIlfg~------~~d-~~~y~~vi~---aC~L~~Dl~~lp~GD~T~iGe~G~~LSGG 737 (1459)
.|+|++|+|-++.. ||+||+.++. .++ +++.+++.+ ...|.+.+ ....-..||||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGG 149 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGG 149 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH----------HCCCHHHCCHH
T ss_conf 12555778804124176866888775788872247899999999999988762423455----------34880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHCCCEEEEEECCEEEEEC
Q ss_conf 9999999998814999888707754414999999999942084568--96599973782012108989999398599932
Q 000503 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1459)
Q Consensus 738 QkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G 815 (1459)
|||||+||||+..+|++++||||+|+||+.+++.|++- +.. +.+ ++|+|++||+++....||+|++|++|+|+++|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKK-LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEEC
T ss_conf 99999987565227888994687654698999999999-999-9984399999987888999869989999899999952
Q ss_pred CH
Q ss_conf 97
Q 000503 816 SS 817 (1459)
Q Consensus 816 ~~ 817 (1459)
+.
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred CC
T ss_conf 57
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.2e-35 Score=296.87 Aligned_cols=202 Identities=28% Similarity=0.351 Sum_probs=170.6
Q ss_pred EEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9997225860578853335540000147409969999968998478999998638557870899709-------------
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------- 672 (1459)
++++|.+++|+.+.. ...+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~--~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECSSC--EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEEEEEEECCCCE--EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHH
T ss_conf 799827999699981--489861505788699799998999898889999875886366773288676852087555115
Q ss_pred ---CEEEECCCCCCCCC-CHHHHHCCC-----CCCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---09998589877787-788986259-----9999--788999999842115574106997530267976567089999
Q 000503 673 ---SIAYVPQVPWILSG-TIRDNILFG-----KNYD--PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1459)
Q Consensus 673 ---~iayv~Q~pwl~n~-TIreNIlfg-----~~~d--~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqR 741 (1459)
+|+|++|+|-+++. |++|||.++ .+-+ +++..+.++.+.|.+-.. .....||||||||
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QR 148 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 148 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHH
T ss_conf 54166430225222799649999999999849998999999999999769903554-----------8943499999989
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHH
Q ss_conf 999998814999888707754414999999999942084568--965999737820121-08989999398599932977
Q 000503 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1459)
Q Consensus 742 IaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~-~aD~Ii~l~~G~i~~~G~~~ 818 (1459)
|+||||+..+|+++++|||+++||+.+.+.|++. +.. +.+ +.|+|++||+++... .||+|++|++|+|++.|+++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKD-INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHH-HHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 9986401058986874465565898885679999-999-98646978999838999999869999999799999987999
Q ss_pred HHHH
Q ss_conf 8874
Q 000503 819 DLAV 822 (1459)
Q Consensus 819 ~l~~ 822 (1459)
++..
T Consensus 227 ei~~ 230 (240)
T d3dhwc1 227 EVFS 230 (240)
T ss_dssp TTTC
T ss_pred HHHH
T ss_conf 9972
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.7e-34 Score=289.39 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=170.6
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------ 672 (1459)
.++++|.+++|.. .++ |+|+||++++|++++|+||+|||||||+++|.|-.++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 6999978999899---998---8150668869979999989998299999999747667899779999993367752000
Q ss_pred --------------CEEEECCCCCCCCC-CHHHHHCCC----CCCCH----HHHHHHHHHHCCHHHHH-HCCCCCCCCCC
Q ss_conf --------------09998589877787-788986259----99997----88999999842115574-10699753026
Q 000503 673 --------------SIAYVPQVPWILSG-TIRDNILFG----KNYDP----QSYSETLKACTLDVDIS-LMVGGDMAYIG 728 (1459)
Q Consensus 673 --------------~iayv~Q~pwl~n~-TIreNIlfg----~~~d~----~~y~~vi~aC~L~~Dl~-~lp~GD~T~iG 728 (1459)
+|+|++|+|-+++. |++|||.++ ..+++ ++..++++.+.|.+... ..|
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-------- 147 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-------- 147 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------
T ss_conf 023517679997454489983323141101021365657876299989999999999998299524430682--------
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-CCCEEEEEE
Q ss_conf 7976567089999999998814999888707754414999999999942084568965999737820121-089899993
Q 000503 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMD 807 (1459)
Q Consensus 729 e~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~-~aD~Ii~l~ 807 (1459)
..|||||||||+||||+..+|+++++|||+++||+.+.+.|++- +..-.-+++|+|++||+++.+. .||+|++|+
T Consensus 148 ---~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~vm~ 223 (258)
T d1b0ua_ 148 ---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 223 (258)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEEEEE
T ss_conf ---20567788898999998439987885245556887888899876-55410368833899489999998699999997
Q ss_pred CCEEEEECCHHHHHHC
Q ss_conf 9859993297788740
Q 000503 808 KGQVKWIGSSADLAVS 823 (1459)
Q Consensus 808 ~G~i~~~G~~~~l~~~ 823 (1459)
+|+|++.|+++|+..+
T Consensus 224 ~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 224 QGKIEEEGDPEQVFGN 239 (258)
T ss_dssp TTEEEEEECHHHHHHS
T ss_pred CCEEEEECCHHHHHHC
T ss_conf 9999998499999838
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-34 Score=295.54 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=180.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899996699895201124997489199998899984899999984369899866999797489999577715628
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCCC-CCCCHHHHCCCCCC-CC-HHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC----
Q ss_conf 98077767-77547883186999-99-2778999999009999996899405416999999359999999998724----
Q 000503 1302 VVPQSPFL-FEGSLRDNLDPFHM-ND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---- 1374 (1459)
Q Consensus 1302 ~IpQdp~l-f~gTIR~NLdp~~~-~s-d~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr---- 1374 (1459)
+++|+... |..++.+|+..+.. .. .+.+.++++ .++++..++.....||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~ 146 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG---------ALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 146 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHH---------HTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH---------HCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 451213577442098876410014668999999998---------65987676768445699889999999999851713
Q ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf ---99779985667698999799999999983-599479985258136753-0979999298598956935785029938
Q 000503 1375 ---SSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1449 (1459)
Q Consensus 1375 ---~~~ILiLDEaTS~lD~~Te~~i~~~i~~~-f~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~ 1449 (1459)
+|+|++|||||++||+.+...+.+.|++. -+++|||+++|+++.+.. ||||++|++|++++.|+|++++.++ .
T Consensus 147 ~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~--~ 224 (231)
T d1l7vc_ 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP--N 224 (231)
T ss_dssp TCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH--H
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH--H
T ss_conf 38998899971877778989999999999999867999999967799999979999999799899988999981886--7
Q ss_pred HHHH
Q ss_conf 9999
Q 000503 1450 FSSF 1453 (1459)
Q Consensus 1450 f~~l 1453 (1459)
+.+.
T Consensus 225 l~~~ 228 (231)
T d1l7vc_ 225 LAQA 228 (231)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-33 Score=287.67 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=167.0
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98459997225860578853335540000147409969999968998478999998638557870899709---------
Q 000503 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1459)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g--------- 672 (1459)
++..++++|.+++|.. ..+ |+|+||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 3 sd~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCEEEEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 5607999618999899---888---8302578889979999999998599999999678888803898424434466088
Q ss_pred -----CEEEECCCCCCCCC-CHHHHHCCCCC--CCHHHHHH-HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -----09998589877787-78898625999--99788999-99984211557410699753026797656708999999
Q 000503 673 -----SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSE-TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 -----~iayv~Q~pwl~n~-TIreNIlfg~~--~d~~~y~~-vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIa 743 (1459)
.++|++|++-++.. |++||+.++.. .+.+..++ +-++..+...+... ......+||||||||++
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHH
T ss_conf 88874235567655457763699999988873278889999999999874176888-------75854338999999999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH-HCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999881499988870775441499999999994208456896599973782012-1089899993985999329778874
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 LARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l-~~aD~Ii~l~~G~i~~~G~~~~l~~ 822 (1459)
+|||+..+|++++||||+++||+...+.|++- +..-..+++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEV-IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 99999829987400398867999999999999-99999689989999588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-33 Score=285.96 Aligned_cols=200 Identities=24% Similarity=0.311 Sum_probs=164.0
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709------------
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g------------ 672 (1459)
.++++|.+.+|+. .++ |+||||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 4 iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77 (254)
T ss_dssp EEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHH
T ss_conf 6999778999799---688---7121799889979999999998499999999779768873799999966405699999
Q ss_pred --CEEEECCCCCCCC-CCHHHHHCCCCCC-----------------CHHHHH---HHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf --0999858987778-7788986259999-----------------978899---9999842115574106997530267
Q 000503 673 --SIAYVPQVPWILS-GTIRDNILFGKNY-----------------DPQSYS---ETLKACTLDVDISLMVGGDMAYIGE 729 (1459)
Q Consensus 673 --~iayv~Q~pwl~n-~TIreNIlfg~~~-----------------d~~~y~---~vi~aC~L~~Dl~~lp~GD~T~iGe 729 (1459)
.|+|++|+|-++. -|++|||.++... +++..+ ++++...+... ...
T Consensus 78 ~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 146 (254)
T d1g6ha_ 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDR 146 (254)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTS
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCC
T ss_conf 833872577642478874232143013330345045665421353289999999999876196302-----------059
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH-HCCCEEEEEEC
Q ss_conf 97656708999999999881499988870775441499999999994208456896599973782012-10898999939
Q 000503 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDK 808 (1459)
Q Consensus 730 ~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l-~~aD~Ii~l~~ 808 (1459)
...+|||||||||++|||+..+|++++||||+++||+...+.|++. +..-.-+++|+|++||+++.+ ..||+|++|++
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 5356991888899999999759272324397656999999999999-999997899899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 85999329778874
Q 000503 809 GQVKWIGSSADLAV 822 (1459)
Q Consensus 809 G~i~~~G~~~~l~~ 822 (1459)
|+++..|+++|+..
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.5e-33 Score=280.81 Aligned_cols=202 Identities=20% Similarity=0.270 Sum_probs=168.2
Q ss_pred CEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------
Q ss_conf 459997225860578853335540000147409969999968998478999998638557870899709-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g----------- 672 (1459)
.+|+++|.+.+|.. .++ |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++|
T Consensus 1 gaI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred CCEEEEEEEEEECC---EEE---ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 97899958999999---999---806256884897999999999999999999966988788879998672446839887
Q ss_pred -CEEEECCCCCCCCC-CHHHHHCCCC---CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -09998589877787-7889862599---99978----899999984211557410699753026797656708999999
Q 000503 673 -SIAYVPQVPWILSG-TIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1459)
Q Consensus 673 -~iayv~Q~pwl~n~-TIreNIlfg~---~~d~~----~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIa 743 (1459)
.++||||++.++.. |++||+.|.. ..+.+ ..+++++.+.|.+... .+..+||||||||++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLL 143 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH-----------HHHHHCCHHHHHHHH
T ss_conf 218675001546878667788898998617998999999999998679788885-----------045337998989999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998814999888707754414999999999942084568965999737820121-089899993985999329778874
Q 000503 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1459)
Q Consensus 744 LARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~ 822 (1459)
+|||+.++|++++||||+++||+...+.|++- +..-...++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~-i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKI-LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998659998873379889798999999999-99999659989999598999999699999998999999928999986
Q ss_pred C
Q ss_conf 0
Q 000503 823 S 823 (1459)
Q Consensus 823 ~ 823 (1459)
.
T Consensus 223 ~ 223 (238)
T d1vpla_ 223 R 223 (238)
T ss_dssp H
T ss_pred C
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.6e-33 Score=280.76 Aligned_cols=182 Identities=27% Similarity=0.381 Sum_probs=154.0
Q ss_pred EEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------CEEEECCCCCCCCC-CHHHHHCC
Q ss_conf 0000147409969999968998478999998638557870899709-----------09998589877787-78898625
Q 000503 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIAYVPQVPWILSG-TIRDNILF 694 (1459)
Q Consensus 627 L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g-----------~iayv~Q~pwl~n~-TIreNIlf 694 (1459)
+ |+||++. +++++++||+|||||||++.|.|..++++|+|.++| .|+|++|+|-++.. ||+|||.|
T Consensus 16 ~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 16 L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9-9999749-9799999799980999999997399989628999999988699899285225231443522015576665
Q ss_pred CCC-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH
Q ss_conf 999-997----889999998421155741069975302679765670899999999988149998887077544149999
Q 000503 695 GKN-YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769 (1459)
Q Consensus 695 g~~-~d~----~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~ 769 (1459)
+.. +++ ++.+++++.+.|.+.. ......|||||||||+||||+..+|++++||||+|+||+++.
T Consensus 94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 94 GLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 323367788999999999863837566-----------579444899998999998777516770675286555887999
Q ss_pred HHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99999942084568--965999737820121-0898999939859993297788740
Q 000503 770 RWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1459)
Q Consensus 770 ~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~~ 823 (1459)
+.+++. +.. +.+ +.|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 163 ~~i~~~-i~~-l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 163 GVLMEE-LRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHH-HHH-HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 999999-999-9874397699981899999996999999989999999069998329
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.8e-32 Score=275.05 Aligned_cols=190 Identities=23% Similarity=0.355 Sum_probs=158.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899996699895201124997489199998899984899999984369899866999797489999577715628
Q 000503 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1459)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1459)
.|+++|++++|+ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.. .|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939---928842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EEECCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98077767775-47883186----9-999927789999990099999968994054169999993599999999987249
Q 000503 1302 VVPQSPFLFEG-SLRDNLDP----F-HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1459)
Q Consensus 1302 ~IpQdp~lf~g-TIR~NLdp----~-~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~ 1375 (1459)
++||++.++.. |+++|+.. + ...+++++.++++..++. +++..++ .||+|||||+++|||++++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~LSgG~~qrv~ia~al~~~ 143 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL------DLKKKLG----ELSQGTIRRVQLASTLLVN 143 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC------CTTSBGG----GSCHHHHHHHHHHHHTTSC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC------CCCCCCC----CCCCCHHHHHHHHHHHHCC
T ss_conf 99501357888289999999997548863799999999874885------6301268----6897188889999988649
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 9779985667698999799999999983599479985258136753097999929
Q 000503 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1430 (1459)
Q Consensus 1376 ~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHrl~ti~~~DrI~vl~~ 1430 (1459)
|+++||||||+++|.++...+++.|.+..+++++++|+|+. .+.-||++.+|.+
T Consensus 144 ~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 98999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-29 Score=254.68 Aligned_cols=196 Identities=20% Similarity=0.319 Sum_probs=161.0
Q ss_pred CEEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------
Q ss_conf 459997225860578853335540000147409969999968998478999998638557870899709-----------
Q 000503 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1459)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g----------- 672 (1459)
..++++|++.+ +.|++|||+|++|++++|+||+|||||||+++|.|.. +.+|+|.++|
T Consensus 2 ~il~~~dv~~~----------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 2 IVMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEEECCT----------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEEECCCCC----------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHH
T ss_conf 59999874157----------1555888899489899999899980999999994887-995599999999986998999
Q ss_pred --CEEEECCCCCC-CCCCHHHHHCCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --09998589877-78778898625999--99788999999842115574106997530267976567089999999998
Q 000503 673 --SIAYVPQVPWI-LSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1459)
Q Consensus 673 --~iayv~Q~pwl-~n~TIreNIlfg~~--~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARA 747 (1459)
..+|.+|+.-. +..++.+|+.++.. ...++.+++++.+.|++.+ +.+..+||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~LSgG~~Qrv~iA~a 139 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAV 139 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTT-----------TSBGGGCCHHHHHHHHHHHH
T ss_pred HHHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHHHH
T ss_conf 8640245121357744209887641001466899999999865987676-----------76844569988999999999
Q ss_pred HCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH-HHCCCEEEEEECCEEEEECCHHH
Q ss_conf 814-------9998887077544149999999999420845689659997378201-21089899993985999329778
Q 000503 748 VYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSAD 819 (1459)
Q Consensus 748 lY~-------~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~-l~~aD~Ii~l~~G~i~~~G~~~~ 819 (1459)
+.+ +|++++||||+++||+...+.+++- +..-..+++|+|++||+++. ...||+|++|++|++++.|+.+|
T Consensus 140 l~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~-i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI-LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp HHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH-HHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred HHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 98517133899889997187777898999999999-99998679999999677999999799999997998999889999
Q ss_pred HHH
Q ss_conf 874
Q 000503 820 LAV 822 (1459)
Q Consensus 820 l~~ 822 (1459)
+..
T Consensus 219 v~~ 221 (231)
T d1l7vc_ 219 VLT 221 (231)
T ss_dssp HSC
T ss_pred HHC
T ss_conf 818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=1.6e-28 Score=245.46 Aligned_cols=181 Identities=23% Similarity=0.384 Sum_probs=146.2
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC--------CEEE
Q ss_conf 59997225860578853335540000147409969999968998478999998638557870899709--------0999
Q 000503 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 676 (1459)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g--------~iay 676 (1459)
.++++|.+++|+ .++ |+|+||++++|++++|+||+|||||||++.|.|.++|++|+|.++| .++|
T Consensus 2 ~lev~~ls~~y~----~~v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS----SEE---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred EEEEEEEEEEEC----CEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEE
T ss_conf 599998999939----928---8420889859989999999997199999999662056778899998962673670899
Q ss_pred ECCCCCCCCC-CHHHHHCC-----CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 8589877787-78898625-----99999788999999842115574106997530267976567089999999998814
Q 000503 677 VPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1459)
Q Consensus 677 v~Q~pwl~n~-TIreNIlf-----g~~~d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 750 (1459)
+||++.++.. |++||+.+ +...+++...+.++...+. |+ .++-.+||||||||+++|||+..
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------~~~~~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-----------KKKLGELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-CC-----------CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9501357888289999999997548863799999999874885-63-----------01268689718888999998864
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCHHHCCCEEEEEEC
Q ss_conf 99988870775441499999999994208456896-59997378201210898999939
Q 000503 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHNVQAISAADMVVVMDK 808 (1459)
Q Consensus 751 ~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~k-TvIlvTH~~~~l~~aD~Ii~l~~ 808 (1459)
+|++++||||+++||+.+.+.+++. +.. +.+++ ++|+++| +.+..||.+.+|.+
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~-l~~-~~~~~~~~ii~~~--~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKS-ILE-ILKEKGIVIISSR--EELSYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHH-HHH-HHHHHSEEEEEES--SCCTTSSEEEEGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEEE--CHHHHCCHHHHEEE
T ss_conf 9989998686201699999999999-999-9867999999991--62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=9.8e-20 Score=173.60 Aligned_cols=304 Identities=10% Similarity=0.061 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99975979999999999999998999999999998426887347999999999999999999999999999999999999
Q 000503 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 353 (1459)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~l~~~l~~~~~~~a~~~~~~~~~~~r~~~~~r~~ 353 (1459)
.+.|++.++...+..++..++....|++++.+++..-.+.+...-+.+++.++.+.++..++.....+...+.+.++...
T Consensus 11 ~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 90 (319)
T d3b60a2 11 IAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMT 90 (319)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999999999998744687789999999999999976453354665443431000110
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998249943257898669999999669999999999-9999979999999999999886799999999999989
Q 000503 354 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 432 (1459)
Q Consensus 354 L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~ri~~~~~~-~~~~w~~p~~i~i~~~lL~~~lG~a~l~g~~~~~~~~ 432 (1459)
+...+|+|.++.+....++.+.|++++.++.|++.+.+.... ........+.++.+++.++..-...++..++++++..
T Consensus 91 l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~ 170 (319)
T d3b60a2 91 MRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 170 (319)
T ss_dssp HHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 00477776501011110233322111112121210000111112001123344566888887652002102566899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999658999981706999999999999999999999999999999998988
Q 000503 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1459)
Q Consensus 433 ~~~~~~~~~~~~~q~~~~~~~d~Rv~~~se~L~~ik~IK~~~we~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~p 512 (1459)
.+..+..++..+.+++..+..++..+...|.++|++.||.+++|+.+.++.++..++..+...+................
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (319)
T d3b60a2 171 IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIA 250 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 98876666877878988764456778877762487235311101024566666531356778888877774064010000
Q ss_pred HHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999--9999999880998877479999999999999999999999999999999999999619998
Q 000503 513 TLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 577 (1459)
Q Consensus 513 ~~~~--~~tf~~y~~~~~~L~~~~~Ftslsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 577 (1459)
.+.. +..++.|....+.++++..++.+.+...+..|+..++..++.+.++.+|.+||.++|+.|+
T Consensus 251 ~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 251 SLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0023799999999998099789999999999999999999999999999999999999999966998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=5.1e-19 Score=167.74 Aligned_cols=316 Identities=15% Similarity=0.174 Sum_probs=239.9
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787999---87414589999999999999999852565654210345788887641378999999999999999999999
Q 000503 886 LTVYKN---YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 962 (1459)
Q Consensus 886 ~~~y~~---y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 962 (1459)
|+++++ |.+...+..... +++.++..+.....++.++..+|.............+..++.++.++..++.+.+.+.
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~-~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVA-GIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 968999999999999999999-9999999999999999999999987446877899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999988538643313567115899996025442000269999999999867786647988878999
Q 000503 963 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1042 (1459)
Q Consensus 963 ~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~ 1042 (1459)
....+.+...++++++++++++.|+.+|++.+.|++++|+++|++.+.+.+...+...+...+..++.++.+.+..|.++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 159 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 159 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 43431000110004777765010111102333221111121212100001111120011233445668888876520021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998630414767886214479997519389999999999999999999999999
Q 000503 1043 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122 (1459)
Q Consensus 1043 ~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~ld~~~~~~~~~~~~~ 1122 (1459)
++.+...+++..+...+.+..+...+...+..+...+...|.++|+.+||+|++|+.+.+++.+..+...+........+
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02566899999988766668778789887644567788777624872353111010245666665313567788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999840688877772199999999999999999999999999999998999999963038
Q 000503 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1459)
Q Consensus 1123 ~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vglal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~ 1202 (1459)
.+......++..+...++... +.. ....+.+++|.+...+.+...+..++..+...+.++.++.+|.+|+.++.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~---g~~-~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 240 SISDPIIQLIASLALAFVLYA---ASF-PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHS-SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHHH---HHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 740640100000023799999---999-9980997899999999999999999999999999999999999999999669
Q ss_pred CCCC
Q ss_conf 7211
Q 000503 1203 PQEE 1206 (1459)
Q Consensus 1203 ~~E~ 1206 (1459)
|+|+
T Consensus 316 ~~E~ 319 (319)
T d3b60a2 316 EQEK 319 (319)
T ss_dssp CCSC
T ss_pred CCCC
T ss_conf 9899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=6.2e-19 Score=167.04 Aligned_cols=306 Identities=13% Similarity=0.121 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999975979999999999999998999999999998426887--34---7--999999999999999999999999999
Q 000503 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HL---D--GYVLAIALGLTSILKSFFDTQYSFHLS 344 (1459)
Q Consensus 272 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~---~--g~~l~~~l~~~~~~~a~~~~~~~~~~~ 344 (1459)
...+.|++.++...++.++..++....|++++.+++.+.++.. .. . .+.++.++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999824994325789866999999966999999999-99999979999999999999886799999
Q 000503 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVS 423 (1459)
Q Consensus 345 r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~ri~~~~~-~~~~~w~~p~~i~i~~~lL~~~lG~a~l~ 423 (1459)
+.+.+++..+...+|+|.++++....++.++|++++.++.|++.+.+... .+...+...+.++++++.+...-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999999999999999999999658999981706999999999999999999999999999
Q 000503 424 GLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503 (1459)
Q Consensus 424 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~se~L~~ik~IK~~~we~~~~~~i~~~R~~El~~~~~~~~~~~~ 503 (1459)
.++++.+...+.....++..+..++..+..++..+.+.|.++|++.||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999898899999--999999880998877479999999999999999999999999999999999999619998
Q 000503 504 CVFFWATTPTLFSL--FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 577 (1459)
Q Consensus 504 ~~~~~~~~p~~~~~--~tf~~y~~~~~~L~~~~~Ftslsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 577 (1459)
..........+... ..++.+....+.++++.+++.+.++..+..|+..+...++.+.++.+|.+||.++|+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=4e-19 Score=168.61 Aligned_cols=312 Identities=15% Similarity=0.219 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 79998741458999999999999999985256565421034578888764--13789-----999999999999999999
Q 000503 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS--TSFYL-----VVLCIFCMFNSFLTLVRA 960 (1459)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~--~~~~l-----~~~~~l~~~~~~~~~~~~ 960 (1459)
.+..|++...+.....+ ++.++..+.....++.++..+|.......... ...+. ..+.++.++..++.+...
T Consensus 4 rl~~~~k~~k~~~~~~~-~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (323)
T d2hyda2 4 RYLQFVKPYKYRIFATI-IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (323)
T ss_dssp HHHHHHGGGHHHHHHHH-HHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999-99999999999999999999999862677421556899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999885386433135671158999960254420002699999999998677866479888789
Q 000503 961 FSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVF 1040 (1459)
Q Consensus 961 ~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~ 1040 (1459)
+.....+.+...++++++++++++.|++||++.++|++++|+++|++.+.+.+...+...+..++..++.++.+.+..|.
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (323)
T d2hyda2 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998556778888766540233210001222110001111332100111345420111466533465440000146
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999986304147678862144799975193899999999999999999999999
Q 000503 1041 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1459)
Q Consensus 1041 ~~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~ld~~~~~~~~~~~ 1120 (1459)
++++.++...++..+...+.+..++..+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+.......
T Consensus 163 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~ 242 (323)
T d2hyda2 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (323)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 88899998877777776412333202677898999999787887559702346764111002330223111101567765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999-99840688877772199999999999999999999999999999998999999963
Q 000503 1121 ASLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1199 (1459)
Q Consensus 1121 ~~~wl~~~l~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vglal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~ 1199 (1459)
.+.+.......+..+....+... ..... .+..++|.+...+.+...+..++..+...+.++..+..|.+|+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~el 317 (323)
T d2hyda2 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAI-----SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQL 317 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20000111110120558999999999998-----4998899999999999999999999999999999999999999999
Q ss_pred HCCCCC
Q ss_conf 038721
Q 000503 1200 MDVPQE 1205 (1459)
Q Consensus 1200 ~~~~~E 1205 (1459)
.|.++|
T Consensus 318 Ld~e~e 323 (323)
T d2hyda2 318 IDEDYD 323 (323)
T ss_dssp HTCCCS
T ss_pred HCCCCC
T ss_conf 779998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.40 E-value=2e-14 Score=130.12 Aligned_cols=171 Identities=11% Similarity=0.037 Sum_probs=116.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998899984899999984369899866999797489999577715628980777677754788318699999277899
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~ 1331 (1459)
||+|+|++|||||||++.+.+.+++..|.+.+++.+....+.+.........++.+.++..+...+....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999900999999689940541699999935999999999872499779985667698--999799999999983599479
Q 000503 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV--DAQTASILQNAISSECKGMTV 1409 (1459)
Q Consensus 1332 aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEaTS~l--D~~Te~~i~~~i~~~f~~~Tv 1409 (1459)
.+.+...- .+++|++|+.++++++.++|+++++||++... +.+....+.+.+++ .++|+
T Consensus 73 -------------~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~i 133 (178)
T d1ye8a1 73 -------------YGVNVQYF----EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNV 133 (178)
T ss_dssp -------------EEECHHHH----HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEE
T ss_pred -------------HHCCCCHH----HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEE
T ss_conf -------------30376256----653201378999999740997423027773100457999999987505--79789
Q ss_pred EEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHH
Q ss_conf 9852581367530979999298598956935785029938999998
Q 000503 1410 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1455 (1459)
Q Consensus 1410 I~IaHrl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~ 1455 (1459)
|.++|+.+....+|++..+++|++++.++. +.+..+.+.++
T Consensus 134 l~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 134 VATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp EEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred EEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 999744778986365998719999998996-----47889999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.10 E-value=1.2e-11 Score=107.38 Aligned_cols=147 Identities=9% Similarity=-0.012 Sum_probs=97.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC--CEEEECC-----------CCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 9999968998478999998638557870899709--0999858-----------98777877889862599999788999
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQ-----------VPWILSGTIRDNILFGKNYDPQSYSE 705 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g--~iayv~Q-----------~pwl~n~TIreNIlfg~~~d~~~y~~ 705 (1459)
-++|+||+|||||||++.|+|++.+..|.+...+ ..++..| .+.+.+.+..++..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CC
Q ss_conf 99984211557410699753026797656708999999999881499988870775441499999999994208456-89
Q 000503 706 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQ 784 (1459)
Q Consensus 706 vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll-~~ 784 (1459)
..+...-..+++|+++|.+++++...+++++++||+....+. .+...+. +..-+. .+
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~-l~~~l~~~~ 130 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDL-VRQIMHDPN 130 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHH-HHHHHTCTT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHH-HHHHHCCCC
T ss_conf -------------------303762566532013789999997409974230277731004--5799999-998750579
Q ss_pred CEEEEECCCCCHHHCCCEEEEEECCEEEEECC
Q ss_conf 65999737820121089899993985999329
Q 000503 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1459)
Q Consensus 785 kTvIlvTH~~~~l~~aD~Ii~l~~G~i~~~G~ 816 (1459)
+|+|+++|.....+.+|++..+++|++.+.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=1.5e-09 Score=90.33 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 9993599999999987----24997799856676989997999999999835-994799852581367530979999
Q 000503 1357 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1428 (1459)
Q Consensus 1357 ~LS~GQrQll~LARAl----Lr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHrl~ti~~~DrI~vl 1428 (1459)
.+|||||.+++||-.+ ..+++|++||||++++|+.+...+.+.|++.. .++-+|+|||+...+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=3.1e-07 Score=71.42 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEE--EEC
Q ss_conf 9993599999999987----2499779985667698999799999999983599479985258136753097999--929
Q 000503 1357 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI--LDH 1430 (1459)
Q Consensus 1357 ~LS~GQrQll~LARAl----Lr~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHrl~ti~~~DrI~v--l~~ 1430 (1459)
.+|.|||+++.++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000503 1431 G 1431 (1459)
Q Consensus 1431 G 1431 (1459)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=8.7e-07 Score=67.70 Aligned_cols=76 Identities=32% Similarity=0.338 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHHHHHC----CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEE--
Q ss_conf 656708999999999881----49998887077544149999999999420845689659997378201210898999--
Q 000503 732 VNLSGGQRARLALARAVY----HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV-- 805 (1459)
Q Consensus 732 ~~LSGGQkqRIaLARAlY----~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Ii~-- 805 (1459)
..+|+|||+...++.... ..+.++++|||=++|++.-.+.+.+. +.. ..++.-+|++||+..++..+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~-l~~-~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-LKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-HHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCCEEEEE
T ss_conf 102577766777776655654226744554320335797899999999-998-554887999989889997324289999
Q ss_pred EECC
Q ss_conf 9398
Q 000503 806 MDKG 809 (1459)
Q Consensus 806 l~~G 809 (1459)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EECC
T ss_conf 9699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=8.6e-06 Score=59.57 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHH--H--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCHHHCCCEEEEE
Q ss_conf 6567089999999998--8--1499988870775441499999999994208456-896599973782012108989999
Q 000503 732 VNLSGGQRARLALARA--V--YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVM 806 (1459)
Q Consensus 732 ~~LSGGQkqRIaLARA--l--Y~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll-~~kTvIlvTH~~~~l~~aD~Ii~l 806 (1459)
..||||||.+++||=. + +..+++++||||.++||+.....+.+- +.. +. ++.-+|++||+.+.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~-~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRR-HRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHH-HCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999-728998899995878999736617999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.58 E-value=0.0034 Score=38.36 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=69.7
Q ss_pred CCEEECEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCEEEEECCCEEEECCCCCCCC-CCHHHHHCCCCCCCHHH
Q ss_conf 5400001474099699999689984789999986-385578708997090999858987778-77889862599999788
Q 000503 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-GEMMLTHGSIHASGSIAYVPQVPWILS-GTIRDNILFGKNYDPQS 702 (1459)
Q Consensus 625 ~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ail-Ge~~~~~G~v~~~g~iayv~Q~pwl~n-~TIreNIlfg~~~d~~~ 702 (1459)
++=.|+.+ . ++++.|+||+.|||||+|+++. -.+--..|.. +...-+-++.-..|+. --..|++.-|..
T Consensus 26 ~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~-vpA~~~~i~~~d~I~~~~~~~d~~~~~~S----- 96 (224)
T d1ewqa2 26 FVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSF-VPAEEAHLPLFDGIYTRIGASDDLAGGKS----- 96 (224)
T ss_dssp CCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCSEEEEECCC------CCS-----
T ss_pred EECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE-EECCCEEEEECCEEEEEECCCCCCCCCCC-----
T ss_conf 54555884--7-867999788734532345565899999852504-61375199401169999877760237830-----
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999984211557410699753026797656708999999999881499988870775441499999999994208456
Q 000503 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782 (1459)
Q Consensus 703 y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll 782 (1459)
.=..+-+|++-.----.+..++|+||.+++=|+.-+..+... ++..+.
T Consensus 97 -------------------------------tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~a-ile~L~ 144 (224)
T d1ewqa2 97 -------------------------------TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATA-VAEALH 144 (224)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHH-HHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHH-HHHHHH
T ss_conf -------------------------------789867889877502897727855454568623320025888-888886
Q ss_pred C-CCEEEEECCCCCHHHC
Q ss_conf 8-9659997378201210
Q 000503 783 L-QKTRILCTHNVQAISA 799 (1459)
Q Consensus 783 ~-~kTvIlvTH~~~~l~~ 799 (1459)
+ +.+++++||..+....
T Consensus 145 ~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 145 ERRAYTLFATHYFELTAL 162 (224)
T ss_dssp HHTCEEEEECCCHHHHTC
T ss_pred HCCCCEEEEEECHHHHHH
T ss_conf 237613786520233322
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.0025 Score=39.45 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=23.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 409969999968998478999998638557870899
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~ 669 (1459)
+..+.-+.|+|++||||||+++++++++++..=-+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivt 198 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS 198 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 983788899940356625789998653014562331
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.43 E-value=0.016 Score=32.86 Aligned_cols=154 Identities=10% Similarity=0.120 Sum_probs=76.0
Q ss_pred EEECEEE--ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHH
Q ss_conf 0000147--40996999996899847899999863855787089970909998589877787788986259999978899
Q 000503 627 LNQVSLC--LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYS 704 (1459)
Q Consensus 627 L~~isl~--i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~ 704 (1459)
|+++ +. +++|+++.|.|+.|||||+|+.-++-+.....+ .+.|++-+ . ..+.+.
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----~------------~~~~~~ 70 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----E------------SRAQLL 70 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----S------------CHHHHH
T ss_pred HHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----C------------CHHHHH
T ss_conf 9884-5689869849999918999999999999999987232------44112126-----7------------999999
Q ss_pred HHHHHHCCHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCEEEECCCCCCC---CHHHHHHHHHHHHCC
Q ss_conf 99998421155741-06997530267976567089999999998814-99988870775441---499999999994208
Q 000503 705 ETLKACTLDVDISL-MVGGDMAYIGEKGVNLSGGQRARLALARAVYH-GSDIYMLDDVLSAV---DAQVARWILSNAIMG 779 (1459)
Q Consensus 705 ~vi~aC~L~~Dl~~-lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~-~~~IllLDD~~SaL---D~~t~~~I~~~~i~g 779 (1459)
+ .++.+..|... ...|....+........ .+...-.+.+++.. ++++++.|...... +..-....... +..
T Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~-l~~ 146 (242)
T d1tf7a2 71 R--NAYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG-VTG 146 (242)
T ss_dssp H--HHHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH-HHH
T ss_pred H--HHHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH-HHH
T ss_conf 9--99982998699854586179973000101-7999999999998408853322043143048999999999999-999
Q ss_pred CCC-CCCEEEEECCCCC-----------HHHCCCEEEEEEC
Q ss_conf 456-8965999737820-----------1210898999939
Q 000503 780 PHM-LQKTRILCTHNVQ-----------AISAADMVVVMDK 808 (1459)
Q Consensus 780 ~ll-~~kTvIlvTH~~~-----------~l~~aD~Ii~l~~ 808 (1459)
-+. .+.|++++.|... .-..||-|+.++.
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99986983999985675125544577640464216999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.39 E-value=0.009 Score=34.90 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 0996999996899847899999863855787089-970909998589877787788986259999978899999984211
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v-~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~aC~L~ 713 (1459)
.++.++.|.||+||||||.+.+++.+++....+| .+...+-|. .|+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~--~~~~------------------------------ 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD--IDGI------------------------------ 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC--CSSS------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CCCC------------------------------
T ss_conf 41054898767877744779998666257874699962674345--6788------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 55741069975302679765670899999999988149998887077544149999999999420845689659997378
Q 000503 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793 (1459)
Q Consensus 714 ~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~ 793 (1459)
-++.+.+ ..|+.---+|..++=++|||++.+|+- |+.|++..++.+.. |+.|+-.-|.
T Consensus 204 ---------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~t-----GhlV~tTlHa 261 (401)
T d1p9ra_ 204 ---------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASLT-----GHLVMSTLHT 261 (401)
T ss_dssp ---------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHT-----TCEEEEEECC
T ss_pred ---------CEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHHHC-----CCEEEEEECC
T ss_conf ---------7026558-----767799999999984138889845768---75999999999724-----9858998336
Q ss_pred CCHH
Q ss_conf 2012
Q 000503 794 VQAI 797 (1459)
Q Consensus 794 ~~~l 797 (1459)
-+-.
T Consensus 262 ~~a~ 265 (401)
T d1p9ra_ 262 NTAV 265 (401)
T ss_dssp SSSH
T ss_pred CCHH
T ss_conf 7667
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.01 Score=34.38 Aligned_cols=133 Identities=13% Similarity=0.123 Sum_probs=67.0
Q ss_pred CCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEECCCEEEECCCCCCCC-CCHHHHHCCC-CCCCHH
Q ss_conf 54000014740996999996899847899999863-85578708997090999858987778-7788986259-999978
Q 000503 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG-EMMLTHGSIHASGSIAYVPQVPWILS-GTIRDNILFG-KNYDPQ 701 (1459)
Q Consensus 625 ~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailG-e~~~~~G~v~~~g~iayv~Q~pwl~n-~TIreNIlfg-~~~d~~ 701 (1459)
++=.|++++ +.+.+..|+||+.|||||+|+++.= -+--..|. .+...-+-.+--..|+. --..|++.-| +.|
T Consensus 30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~-~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F--- 104 (234)
T d1wb9a2 30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS-YVPAQKVEIGPIDRIFTRVGAADDLASGRSTF--- 104 (234)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC-CBSSSEEEECCCCEEEEEEC-----------C---
T ss_pred CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC-EEECCCEECCCCHHHEEEECCCCCCCCCHHHH---
T ss_conf 264057988-9953999954673136899998799999987297-67417666134420234874675343653189---
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 89999998421155741069975302679765670899999999988149998887077544149999999999420845
Q 000503 702 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781 (1459)
Q Consensus 702 ~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~l 781 (1459)
...-+|++-.----.+..++|+||++++=|+.-+..+... ++..+
T Consensus 105 ----------------------------------~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a-~l~~l 149 (234)
T d1wb9a2 105 ----------------------------------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWA-CAENL 149 (234)
T ss_dssp ----------------------------------HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHH-HHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHH
T ss_conf ----------------------------------9999999999974546608853222358774566678987-64543
Q ss_pred -CCC-CEEEEECCCCCHH
Q ss_conf -689-6599973782012
Q 000503 782 -MLQ-KTRILCTHNVQAI 797 (1459)
Q Consensus 782 -l~~-kTvIlvTH~~~~l 797 (1459)
.+. ..+|++||..+..
T Consensus 150 ~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 150 ANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHTTCCEEEEECSCGGGG
T ss_pred HCCCCCEEEEECCHHHHH
T ss_conf 204544289852468776
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.03 E-value=0.014 Score=33.37 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=32.4
Q ss_pred EEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECC
Q ss_conf 00001474099699999689984789999986385578708997090999858
Q 000503 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 679 (1459)
Q Consensus 627 L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q 679 (1459)
|+++.--+.+|++++|.|++|+|||+|+.-++-.+....|. ++.|.+=
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-----~v~~~s~ 72 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-----KVGLAML 72 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-----CEEEEES
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-----CEEEEEE
T ss_conf 88874697898089999479997999999999726553366-----3457640
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.041 Score=29.51 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=65.9
Q ss_pred CCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC----CCCEEEEECCCEEEECCCCCCCCCCHHHHHC-CCCCC
Q ss_conf 554000014740996999996899847899999863855----7870899709099985898777877889862-59999
Q 000503 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASGSIAYVPQVPWILSGTIRDNIL-FGKNY 698 (1459)
Q Consensus 624 ~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~----~~~G~v~~~g~iayv~Q~pwl~n~TIreNIl-fg~~~ 698 (1459)
+.++.+ +.+|+++.|.|+.|+|||+|+..+.-.+. ...+...-.+.+.|++-+.- ...+++.+. .+..+
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~ 93 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHL 93 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTS
T ss_pred HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCC
T ss_conf 898689----55895899992899989999999999997699721112357873689851234--999999999986236
Q ss_pred CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHH
Q ss_conf 978899999984211557410699753026797656708999999999881499988870775441-----499999999
Q 000503 699 DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV-----DAQVARWIL 773 (1459)
Q Consensus 699 d~~~y~~vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaL-----D~~t~~~I~ 773 (1459)
+...+...... +...+. .+...... -....-.+.+ -..+++++++|-..... |....+.++
T Consensus 94 ~~~~~~~~~~~------~~~~~~-----~~~~~~~~--~~~~~~~~~~-~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~ 159 (274)
T d1nlfa_ 94 SAEERQAVADG------LLIQPL-----IGSLPNIM--APEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVI 159 (274)
T ss_dssp CHHHHHHHHHH------EEECCC-----TTSCCCTT--SHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred CHHHHHCCCCC------CEECCC-----CCCCCHHH--HHHHHHHHHH-HCCCCCEEECCCHHHHCCCCCCCHHHHHHHH
T ss_conf 86665312333------232145-----67420357--8999999887-5267658962813542266523225689999
Q ss_pred HHHHCCCCCC--CCEEEEECCC
Q ss_conf 9942084568--9659997378
Q 000503 774 SNAIMGPHML--QKTRILCTHN 793 (1459)
Q Consensus 774 ~~~i~g~ll~--~kTvIlvTH~ 793 (1459)
+. +.. +.+ +.|+|++.|.
T Consensus 160 ~~-l~~-la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 160 GR-MEA-IAADTGCSIVFLHHA 179 (274)
T ss_dssp HH-HHH-HHHHHCCEEEEEEEC
T ss_pred HH-HHH-HHHCCCCCEEHHHHC
T ss_conf 88-777-764479754013100
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.037 Score=29.83 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 74891999988999848999999843
Q 000503 1247 IEGGTQVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1247 I~~GekvgIvGrTGSGKSTLl~~L~r 1272 (1459)
+.||+.+-|+|++|+||||++..+.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.71 E-value=0.0049 Score=37.06 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9969999968998478999998638557870899
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~ 669 (1459)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.068 Score=27.68 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 69999968998478999998638557870899709099985898777877889862599999788999999842115574
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~aC~L~~Dl~ 717 (1459)
=-++++|+.|+|||||+++++|+-... ++..| ++.++.+.....+.. . .+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~~-----------~--~~- 51 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHIDG-----------M--PL- 51 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEETT-----------E--EE-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEECCC-----------C--EE-
T ss_conf 899998999998999999996888667------------51246----642204765320268-----------2--35-
Q ss_pred HCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 10699753026797--6567089999999998814999888707754414999999999942084568965999737820
Q 000503 718 LMVGGDMAYIGEKG--VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795 (1459)
Q Consensus 718 ~lp~GD~T~iGe~G--~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~ 795 (1459)
..+...| ..-.+.++..+..+...|.++++++++-..+.-+.....+.+.. +......++.+|+|-+..+
T Consensus 52 -------~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 52 -------HIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPE-FIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp -------EEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHH-HHHHSCTTCCEEEEEECHH
T ss_pred -------EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH-HHHHCCCCCCEEECCCHHH
T ss_conf -------41365321224652024789999999874133201102565420345554445-5542014101020465444
Q ss_pred HHHC
Q ss_conf 1210
Q 000503 796 AISA 799 (1459)
Q Consensus 796 ~l~~ 799 (1459)
..+.
T Consensus 124 l~~~ 127 (161)
T d2gj8a1 124 ITGE 127 (161)
T ss_dssp HHCC
T ss_pred HHHH
T ss_conf 3355
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.00 E-value=0.016 Score=32.89 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++|+|++|+|||||+++++|+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.015 Score=33.06 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89199998899984899999984369899866999
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1283 (1459)
+|+...++|.||.|||||+++|.+-.....|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.76 E-value=0.077 Score=27.24 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=11.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
.|.|+|++||||||+++.|.+
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.66 E-value=0.012 Score=33.88 Aligned_cols=27 Identities=52% Similarity=0.677 Sum_probs=22.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 999968998478999998638557870
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~~~~G 666 (1459)
++|+|++|+|||||+++|+|.-....|
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999899999789999999588867775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.64 E-value=0.0041 Score=37.65 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9969999968998478999998638557870899
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~ 669 (1459)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.054 Score=28.54 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=20.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09969999968998478999998638
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe 660 (1459)
++-++++++|+.||||||+.+.++-+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.19 E-value=0.014 Score=33.38 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999968998478999998638557
Q 000503 637 GSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 637 G~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
|.+++|+||+||||||+.+.+..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.018 Score=32.44 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCC
Q ss_conf 999996899847899999863855787089970909998589877787
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~ 686 (1459)
+++|.|++||||||+.+.|-..+....+ +.++..++++.+....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCC
T ss_conf 9999689999876899999999730468----9965999521568984
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.15 E-value=0.018 Score=32.49 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=31.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 997489199998899984899999984369899866999
Q 000503 1245 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283 (1459)
Q Consensus 1245 l~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1283 (1459)
.-++.+..+-|+|+|||||||++++|++.+++..=-|+|
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 999837888999403566257899986530145623311
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.96 E-value=0.025 Score=31.23 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4099699999689984789999986385
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
+|+|+++.|.|+.|||||+|..-++-..
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5588799998589898899999999986
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.96 E-value=0.018 Score=32.43 Aligned_cols=24 Identities=50% Similarity=0.753 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
-++++|.+|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.95 E-value=0.016 Score=32.76 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.071 Score=27.57 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 09969999968998478999998638557870899709099985898777877889862599999788999
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 705 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~ 705 (1459)
..+.+.+++|+.||||||+.+.|...+.. ..++ ..++...........+.++.......
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFLD--------GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEEE--------GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEC--------HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----8310--------36645998853002476300113477
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.84 E-value=0.15 Score=24.98 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=63.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 40996999996899847899999863855787089970909998589877787788986259999978899999984211
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~aC~L~ 713 (1459)
+++..-+.+.||.|+|||++.+++.+++.. .+-+++ +
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~------------------------------~---- 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK------------------------------G---- 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC------------------------------H----
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE------------------------------H----
T ss_conf 998875788789987630477887877189---------479988------------------------------7----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH---------HHHHHHHH---HHCCCC
Q ss_conf 557410699753026797656708999999999881499988870775441499---------99999999---420845
Q 000503 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ---------VARWILSN---AIMGPH 781 (1459)
Q Consensus 714 ~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~IllLDD~~SaLD~~---------t~~~I~~~---~i~g~l 781 (1459)
.|+.. +..| .+.++-|-.+.+|--..|-|+++||.=+..... ..+.+... .+-+ .
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~ 141 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-M 141 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
T ss_conf 99525------3165------158999999999986398435687546324557876788737999999999999628-6
Q ss_pred CC-C-CEEEEECCCCCHHHC
Q ss_conf 68-9-659997378201210
Q 000503 782 ML-Q-KTRILCTHNVQAISA 799 (1459)
Q Consensus 782 l~-~-kTvIlvTH~~~~l~~ 799 (1459)
.. + --+|.+||+++.++.
T Consensus 142 ~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ----CCEEEECCBSCTTTSC
T ss_pred CCCCCEEEEEECCCCHHCCH
T ss_conf 77799899991799222799
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.59 E-value=0.058 Score=28.27 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986385
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.|++++++|+.||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.00054 Score=44.88 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=65.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCC------CCCC
Q ss_conf 9999889998489999998436989986699979748999957771562898077767775478831869------9999
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------HMND 1325 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~NLdp~------~~~s 1325 (1459)
.|.|+|+.|+|||||+..+.+.+....+.+.+.+.+...............+.|+...+.....++.... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred HHHHHHHHHHHCHH--HHHHHC---CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 27789999990099--999968---9940541699999935999999999872499779985667698999799999999
Q 000503 1326 DLKIWSVLEKCHVK--EEVEAV---GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400 (1459)
Q Consensus 1326 d~ei~~aL~~~~L~--~~i~~l---gLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEaTS~lD~~Te~~i~~~i 1400 (1459)
+.+ .++..... +.+... +.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+
T Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (189)
T d2i3ba1 83 DLT---SFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEI 157 (189)
T ss_dssp CHH---HHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHH
T ss_pred CHH---HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHH
T ss_conf 377---777788999999988762189706861433330535999999999854686599961555775569--999998
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 98359947998525
Q 000503 1401 SSECKGMTVITIAH 1414 (1459)
Q Consensus 1401 ~~~f~~~TvI~IaH 1414 (1459)
++ ..+.+++.++.
T Consensus 158 ~~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RN-RKDVKVFNVTK 170 (189)
T ss_dssp HT-TCCSEEEECCS
T ss_pred HC-CCCCEEEEECH
T ss_conf 67-89974999786
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.59 E-value=0.032 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689984789999986385
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.02 Score=32.04 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689984789999986385578
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLT 664 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~ 664 (1459)
+++|+|+.|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.35 E-value=0.17 Score=24.37 Aligned_cols=173 Identities=14% Similarity=0.214 Sum_probs=79.3
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCCC-EEEECCCCCCCCCHHH
Q ss_conf 2011249974891999988999848999999843-6989986699979748999957771562-8980777677754788
Q 000503 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-LTPICGGQILVDGLNIINTPVRDLRGRF-AVVPQSPFLFEGSLRD 1316 (1459)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r-l~~~~~G~I~IDG~di~~i~~~~lR~~i-~~IpQdp~lf~gTIR~ 1316 (1459)
.|+++.--+.|||.+-|.|++|+||||++.-+.. +..-..-.+.+-. -..+.+....++ +...+-+.--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~------ 94 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQ------ 94 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGG------
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHH------
T ss_conf 688874697898089999479997999999999726553366345764---01111357769999864587101------
Q ss_pred HCCCCCCCCHHHHHHHHHHHCHHHHHHHC-CCCH-HHHCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCC-----C
Q ss_conf 31869999927789999990099999968-9940-541699999935999999999872--4997799856676-----9
Q 000503 1317 NLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLET-FVKESGISFSVGQRQLICLARALL--KSSKVLCLDECTA-----N 1387 (1459)
Q Consensus 1317 NLdp~~~~sd~ei~~aL~~~~L~~~i~~l-gLdt-~i~e~G~~LS~GQrQll~LARAlL--r~~~ILiLDEaTS-----~ 1387 (1459)
.+..-...++...+.+..+.. +-+. ...+........ .++...+... .+++++++|=.+- +
T Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~ 164 (277)
T d1cr2a_ 95 --------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASG 164 (277)
T ss_dssp --------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC------
T ss_pred --------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf --------012222214567788898874035214662143310689--9999865432136762599705421203465
Q ss_pred CCHH--HHHHHHHHHHHHC--CCCEEEEECCCH----------------HHH-------HHCCEEEEEEC
Q ss_conf 8999--7999999999835--994799852581----------------367-------53097999929
Q 000503 1388 VDAQ--TASILQNAISSEC--KGMTVITIAHRI----------------STV-------LNMDEILILDH 1430 (1459)
Q Consensus 1388 lD~~--Te~~i~~~i~~~f--~~~TvI~IaHrl----------------~ti-------~~~DrI~vl~~ 1430 (1459)
-+.. ....+.+.++... .+|+|++++|=- +.+ ..+|.|+.+..
T Consensus 165 ~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.038 Score=29.80 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCC---CHHHHHHHHHHHCC
Q ss_conf 996999996899847899999863855787089970909998589877787788986259999---97889999998421
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTL 712 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~---d~~~y~~vi~aC~L 712 (1459)
+|.+++|+||+|+||+||.+.++-+.+...-.. .|.|..-.| |++=.-|..| +++.+++-+++=.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g~f 69 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRDAF 69 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------865543212334328999987542111
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.22 E-value=0.023 Score=31.48 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.13 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998478999998638557
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
..+.||.|+||||+..+++-++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899999889999999976227
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.019 Score=32.20 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998899984899999984369899
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPIC 1277 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~ 1277 (1459)
.++|+|++|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.017 Score=32.61 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999968998478999998638557870899
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~ 669 (1459)
.+.|+||.|+|||||++.+..++....+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999889997199999999999997799799
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.83 E-value=0.015 Score=33.03 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 919999889998489999998436989
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLTPI 1276 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~~~ 1276 (1459)
|..|.|+||+||||||+.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.81 E-value=0.045 Score=29.20 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8919999889998489999998436989986699979
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1285 (1459)
.|+.|.|+|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.77 E-value=0.21 Score=23.75 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=48.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 48919999889998489999998436989986699979748999957771562898077767775478831869999927
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1327 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ 1327 (1459)
+..+.|-+||..||||||+...++.- .|.+.|+. ++++. -+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH---------------------------HH
T ss_conf 99989999899999899999999976----59789760--------77778---------------------------88
Q ss_pred HHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 78999999009999996899405416999999359999-99999872499779985
Q 000503 1328 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL-ICLARALLKSSKVLCLD 1382 (1459)
Q Consensus 1328 ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQl-l~LARAlLr~~~ILiLD 1382 (1459)
.+.+.++. .+. .|.+..++. .+.+..+|+. +.+|+..=-+..++.+|
T Consensus 53 ~~~~~~~~-----~l~-~g~~vIiD~--t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA-----ALR-QGKRVVIDN--TNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH-----HHH-TTCCEEEES--CCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH-----HHH-CCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999-----997-799955517--6799999999999998558887999948
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.74 E-value=0.035 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.58 E-value=0.065 Score=27.87 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=23.4
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 474099699999689984789999986385
Q 000503 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 632 l~i~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
+.-++|.++.++|.+||||||+.+.|.-.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 858998699998999999899999999887
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.041 Score=29.49 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCC
Q ss_conf 9999968998478999998638557870899709099985898777
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~ 684 (1459)
+++|.|++||||||+.+.|.-.+...... .....+..++|+.|-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCC
T ss_conf 99998999787999999999996410134-5788439993465322
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.45 E-value=0.031 Score=30.46 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++|+|+.++|||||+++|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.046 Score=29.10 Aligned_cols=24 Identities=58% Similarity=0.717 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 919999889998489999998436
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.39 E-value=0.21 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9748919999889998489999998436
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
-+++|..+-|.|++|+|||++..-+..-
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9869849999918999999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.37 E-value=0.016 Score=32.82 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=39.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCC
Q ss_conf 8919999889998489999998436989986699979748999957771562898077767
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1309 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~l 1309 (1459)
+|....++|.||.|||||+++|.+-.....|.|.-. ..-+.|+-|.+--+-+...++
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~~l~~~~gg~i 152 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHVELIHTSGGLV 152 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEEEEEECCCCEE
T ss_conf 356499987787348789875151767640355533----589712443478886279789
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.36 E-value=0.18 Score=24.29 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986385
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
+-..++|+||.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.30 E-value=0.04 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998638557
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
...|+|..|||||||+..++.++..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.21 E-value=0.058 Score=28.26 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=26.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 489199998899984899999984369899866
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1280 (1459)
.++-.|-+.|||||||||.+.++++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.21 E-value=0.043 Score=29.33 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++++|+.|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.20 E-value=0.031 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCE
Q ss_conf 1999988999848999999843698998---66999797
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGL 1286 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~~~~---G~I~IDG~ 1286 (1459)
..+||+|++|||||||+..|.+.+.... |.|..|+-
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.17 E-value=0.056 Score=28.38 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.16 E-value=0.058 Score=28.24 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.++++|+.|+|||||+++|+|+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.11 E-value=0.058 Score=28.25 Aligned_cols=23 Identities=48% Similarity=0.807 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++++|++|+|||||+++++|+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.041 Score=29.51 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 891999988999848999999843698
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
.|..+.|+||||+||+||.+.|+.-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.94 E-value=0.066 Score=27.83 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699999689984789999986385
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
|+|-.++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.032 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 099699999689984789999986385578
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~~~ 664 (1459)
.+.-.++|+|+.|+|||||+..+...+...
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 983289743899998999999999999756
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.038 Score=29.77 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|..|+|||||+++|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.067 Score=27.77 Aligned_cols=22 Identities=45% Similarity=0.890 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
.++++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.68 E-value=0.059 Score=28.19 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689984789999986385
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
..++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.60 E-value=0.28 Score=22.73 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=56.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 999968998478999998638557--870899709099985898777877889862599999788999999842115574
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMML--THGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~~--~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~aC~L~~Dl~ 717 (1459)
++|+|++|+|||||..+||..... ..|++ .+..+. ..|+++..++-+. ...-..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v---------~~g~~~------------~D~~~~E~~r~~t---i~~~~~ 60 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRV---------EEGTTT------------TDYTPEAKLHRTT---VRTGVA 60 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCG---------GGTCCS------------SCCSHHHHHTTSC---CSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHCCC---------HHCCCC------------CCCHHHHHHHCCE---EEEECC
T ss_conf 9999488980999999999970975530662---------222113------------5626988873876---875102
Q ss_pred --HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf --10699753026797656708999999999881-499988870775441499999999994208456896599973782
Q 000503 718 --LMVGGDMAYIGEKGVNLSGGQRARLALARAVY-HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794 (1459)
Q Consensus 718 --~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY-~~~~IllLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~ 794 (1459)
.+.+---+.+...|..==.|...+ |+- ++.-|++. |+..++-+.|.++ |+.+ ..++..++++-+.+
T Consensus 61 ~~~~~~~~~n~iDtPGh~dF~~e~~~-----al~~~D~avlvv-da~~Gv~~~t~~~-~~~~----~~~~~p~~i~iNk~ 129 (267)
T d2dy1a2 61 PLLFRGHRVFLLDAPGYGDFVGEIRG-----ALEAADAALVAV-SAEAGVQVGTERA-WTVA----ERLGLPRMVVVTKL 129 (267)
T ss_dssp EEEETTEEEEEEECCCSGGGHHHHHH-----HHHHCSEEEEEE-ETTTCSCHHHHHH-HHHH----HHTTCCEEEEEECG
T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHH-----HHCCCCCEEEEE-ECCCCCCCHHHHH-HHHH----HHCCCCCCCCCCCC
T ss_conf 22234321068806815543355654-----312467338984-2357742115788-7765----54044310133320
Q ss_pred C
Q ss_conf 0
Q 000503 795 Q 795 (1459)
Q Consensus 795 ~ 795 (1459)
+
T Consensus 130 D 130 (267)
T d2dy1a2 130 D 130 (267)
T ss_dssp G
T ss_pred C
T ss_conf 2
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.56 E-value=0.28 Score=22.70 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
-+.+.||.|||||++.+++..|+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.54 E-value=0.28 Score=22.68 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8919999889998489999998436
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.48 E-value=0.066 Score=27.80 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899984899999984369
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
+|.++|+||+||||++++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.095 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7409969999968998478999998638557
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
-+++|+++.|.|+.|||||+|+..++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.45 E-value=0.079 Score=27.17 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHHCCCCCEEEECC--CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 998814999888707--754414999999999942084568965999737820
Q 000503 745 ARAVYHGSDIYMLDD--VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795 (1459)
Q Consensus 745 ARAlY~~~~IllLDD--~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~ 795 (1459)
++-...+.|++++|- .++.-|. .+.+. +. ..++-+++|-+..+
T Consensus 129 ~~~~~~~~d~~l~~~~~~~~~~d~----~l~~~-l~---~~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 129 EKMKFYEYDFFIIISATRFKKNDI----DIAKA-IS---MMKKEFYFVRTKVD 173 (400)
T ss_dssp HHTTGGGCSEEEEEESSCCCHHHH----HHHHH-HH---HTTCEEEEEECCHH
T ss_pred HHHHHHCCEEEEEECCCCCCHHHH----HHHHH-HH---HCCCCEEEEEECCC
T ss_conf 874332265999965888878899----99999-99---76998799970863
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.43 E-value=0.033 Score=30.30 Aligned_cols=24 Identities=50% Similarity=0.703 Sum_probs=15.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 919999889998489999998436
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
.=+|+|+|++++|||||+++|.+.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 978999889999899999998589
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.26 E-value=0.3 Score=22.48 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=25.7
Q ss_pred EEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 000014740996999996899847899999863855
Q 000503 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 627 L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
++++....++ -+.+.||.|||||++.+++..|+.
T Consensus 37 ~~~~g~~~~~--~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 37 FQKLGGKIPK--GVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp C-----CCCC--EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHCCCCCCC--EEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9986999888--678668998882289999999829
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.21 E-value=0.077 Score=27.27 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699999689984789999986385
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|.++.++|+.||||||+.++|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.0039 Score=37.82 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEECEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 00001474099699999689984789999986
Q 000503 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 627 L~~isl~i~~G~l~~IvG~vGSGKSTLL~ail 658 (1459)
.++.++++.+| +++|+|++||||||++.||.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.00 E-value=0.097 Score=26.45 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4891999988999848999999843698
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
|+|-+|.|.|++||||||+...|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.99 E-value=0.13 Score=25.53 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89199998899984899999984369899866999797489999577715628980777677754788318699999277
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1328 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~e 1328 (1459)
+-..|.|+|+.||||||+...|..-+ |-+.|+.- +-+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000232036
Q ss_pred HHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89999990099999968994054169999993599999999987249977998566
Q 000503 1329 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384 (1459)
Q Consensus 1329 i~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEa 1384 (1459)
....+...-...... .-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~~--~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVKA--NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCC--CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 789999998864003--777535404---313689999999861545543125798
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.89 E-value=0.097 Score=26.43 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999996899847899999863855
Q 000503 637 GSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 637 G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
..++.|.|++||||||+.++|..++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.83 E-value=0.32 Score=22.17 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
-+.+.||.|||||++.+++..++.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 799889699988999999862010
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.71 E-value=0.088 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999889998489999998436989
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPI 1276 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~ 1276 (1459)
.|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.09 Score=26.72 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999863855
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.+++|+||+|+||+||.+.|+.+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.08 Score=27.14 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=35.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHH
Q ss_conf 199998899984899999984369899866999797489999577715628980777677754788
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1316 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~ 1316 (1459)
=.|||+|++||||||+.+.|..++.-..+ ..++.+|++|.+..+...++
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHH
T ss_conf 89999689999876899999999730468-----------------99659995215689845888
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.34 Score=21.99 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.29 Score=22.52 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|..|+|||||++.+++.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.49 E-value=0.13 Score=25.48 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=30.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
Q ss_conf 740996999996899847899999863855787089970909998589
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~ 680 (1459)
=+|+|+++.|.|+.|||||+|..-++-........-...+.+.|...+
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~ 77 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 986996999983899988999999999863124312689639999402
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.48 E-value=0.096 Score=26.46 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|..|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.47 E-value=0.12 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4891999988999848999999843698
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
+.|..|.++|.+||||||+...|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.41 E-value=0.094 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|+|++.+|||||+++|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.13 E-value=0.36 Score=21.73 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=13.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689984789999986385
Q 000503 637 GSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 637 G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
...++++||+|+||||.+.-|.-.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999999899999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.13 E-value=0.11 Score=25.84 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 91999988999848999999843698
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
...|.|+|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.11 E-value=0.077 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999863855
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
+.--++++|+.|+|||||++.+.|.-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.1 Score=26.24 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=32.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
Q ss_conf 7409969999968998478999998638557870899709099985898
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~p 681 (1459)
-+|+|+++.|.|+.|||||+|...++.+.............+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.06 E-value=0.11 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|+|+.|+|||||++++.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.03 E-value=0.1 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999863855
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.+++|+|+.||||||+.+.|..++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.00 E-value=0.11 Score=25.94 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.|+|||||++.+.++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.00 E-value=0.37 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899847899999863855
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
..+.||.|+||||+..++..|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.99 E-value=0.12 Score=25.60 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCC
Q ss_conf 999988999848999999843698998669997974899995777156289807776777
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1311 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~ 1311 (1459)
.|||.|++||||||+.+.|...+.... + ..-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~------------~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--V------------DYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--S------------CGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--C------------CCCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101--3------------457884399934653224
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.99 E-value=0.094 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 96999996899847899999863855787
Q 000503 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1459)
Q Consensus 637 G~l~~IvG~vGSGKSTLL~ailGe~~~~~ 665 (1459)
+.+++|.|+.||||||+++.|.-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.95 E-value=0.14 Score=25.23 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=89.91 E-value=0.11 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489199998899984899999984369
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.80 E-value=0.12 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.79 E-value=0.11 Score=25.94 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=69.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EEC--CCEEEECCCCCCCCCCHHH------HHCCCCCCCHHHHHHHHHH
Q ss_conf 999996899847899999863855787089-970--9099985898777877889------8625999997889999998
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSI-HAS--GSIAYVPQVPWILSGTIRD------NILFGKNYDPQSYSETLKA 709 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v-~~~--g~iayv~Q~pwl~n~TIre------NIlfg~~~d~~~y~~vi~a 709 (1459)
-++|+|..+||||||+++|+|+=-.-.|.. ... -.|-|- +++....+.-.+ ..-....+|.......+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLT-HLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEE-ECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE-CCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 599981898979999999968997887897540688899994-5776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHHC-----CCCCCCCCCCCCCCCCCH-------HHHHHHHHHHHCCCCC--EEEECCCCCCCCH
Q ss_conf 42---------11557410-----699753026797656708-------9999999998814999--8887077544149
Q 000503 710 CT---------LDVDISLM-----VGGDMAYIGEKGVNLSGG-------QRARLALARAVYHGSD--IYMLDDVLSAVDA 766 (1459)
Q Consensus 710 C~---------L~~Dl~~l-----p~GD~T~iGe~G~~LSGG-------QkqRIaLARAlY~~~~--IllLDD~~SaLD~ 766 (1459)
.. ...+.... -..+.+.|...|.+-+.- +.+--.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 999999999420845689659997378
Q 000503 767 QVARWILSNAIMGPHMLQKTRILCTHN 793 (1459)
Q Consensus 767 ~t~~~I~~~~i~g~ll~~kTvIlvTH~ 793 (1459)
.....+.+. +.+ . ..+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-E-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-S-CSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-C-CCEEEEEEECC
T ss_conf 499999997-386-7-88589998204
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=89.74 E-value=0.12 Score=25.66 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.71 E-value=0.11 Score=25.92 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
.|+|+|++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.59 E-value=0.14 Score=25.08 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999848999999843698
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
.|+|+|+.|||||||+..|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.47 E-value=0.12 Score=25.75 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1999988999848999999843698
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.15 Score=24.92 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 91999988999848999999843698
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
...|.|+||||+||+||.+.|++-.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.34 E-value=0.41 Score=21.29 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=12.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998899984899999984369
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
..+.+||+||+||||.+.=|...+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.10 E-value=0.11 Score=25.85 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.08 E-value=0.14 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19999889998489999998436
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
-.|+|+|++|+|||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999998899999999679
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.02 E-value=0.26 Score=22.87 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEECEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 000014740996999996899847899999863
Q 000503 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1459)
Q Consensus 627 L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailG 659 (1459)
++.--+.+ .|.=+.+.|++|+||||+...++.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.00 E-value=0.18 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699999689984789999986385
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
|+|--++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.93 E-value=0.12 Score=25.75 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 91999988999848999999843698998669
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I 1281 (1459)
+..|+|.|+.||||||+.+.|...+.....++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.92 E-value=0.034 Score=30.21 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.|+|||||++++.|+-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.88 E-value=0.18 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899984899999984369
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
.|||+|++.+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.88 E-value=0.14 Score=25.16 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998638557
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.78 E-value=0.091 Score=26.66 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.67 E-value=0.2 Score=23.82 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=71.2
Q ss_pred EEECEE-EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 000014-7409969999968998478999998638557870899709099985898777877889862599999788999
Q 000503 627 LNQVSL-CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 705 (1459)
Q Consensus 627 L~~isl-~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~ 705 (1459)
|+++-- -+++|+++.|.|+.|+|||+|..-++.......+ ..+.|++-+.- ...++....- ..++.+.+..
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-----~~~~~~s~e~~--~~~~~~~~~~-~~~~~~~~~~ 86 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEET--PQDIIKNARS-FGWDLAKLVD 86 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSC--HHHHHHHHGG-GTCCHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCC--HHHHHHHHHH-CCCCHHHHHH
T ss_conf 98855689969839999947999999999999999998568-----87420126679--9999999998-4998489887
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HH-HHHHHC-CCCCEEEECCCCCCC----CHHHHHHHHHHHHC
Q ss_conf 999842115574106997530267976567089999-99-999881-499988870775441----49999999999420
Q 000503 706 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR-LA-LARAVY-HGSDIYMLDDVLSAV----DAQVARWILSNAIM 778 (1459)
Q Consensus 706 vi~aC~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqR-Ia-LARAlY-~~~~IllLDD~~SaL----D~~t~~~I~~~~i~ 778 (1459)
.- +.... +.....+.-.......... +. +.+++. .+++++++|...+-. +......++..++.
T Consensus 87 ---~~----~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~ 156 (242)
T d1tf7a1 87 ---EG----KLFIL---DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 156 (242)
T ss_dssp ---TT----SEEEE---ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred ---HC----CHHHH---HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---14----30244---421033544443024589999999999886312220020788998760572678999999999
Q ss_pred CCCCCCCEEEEECCCCCH---------H-HCCCEEEEEE
Q ss_conf 845689659997378201---------2-1089899993
Q 000503 779 GPHMLQKTRILCTHNVQA---------I-SAADMVVVMD 807 (1459)
Q Consensus 779 g~ll~~kTvIlvTH~~~~---------l-~~aD~Ii~l~ 807 (1459)
-....+.|++++.|...- . ..+|.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 157 RLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 998639716884210255422246762335362999988
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.54 E-value=0.15 Score=24.80 Aligned_cols=149 Identities=15% Similarity=0.016 Sum_probs=64.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EEC--CCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH-HHHH----H
Q ss_conf 999996899847899999863855787089-970--9099985898777877889862599999788999-9998----4
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSI-HAS--GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE-TLKA----C 710 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v-~~~--g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~-vi~a----C 710 (1459)
-++|+|...||||||+++|+|.=-.-.|.. ... -.|.|........... +.-.....|.+.+.. ..++ +
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFL---HCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEET---TSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE---ECCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 6999768989799999999689868878974035788999723565226898---6899714788999999999998850
Q ss_pred CCH----HHHHH----C-CCCCCCCCCCCCCC------CCCHHHH-HHHHHHHHCCCCC--EEEECCCCCCCCHHHHHHH
Q ss_conf 211----55741----0-69975302679765------6708999-9999998814999--8887077544149999999
Q 000503 711 TLD----VDISL----M-VGGDMAYIGEKGVN------LSGGQRA-RLALARAVYHGSD--IYMLDDVLSAVDAQVARWI 772 (1459)
Q Consensus 711 ~L~----~Dl~~----l-p~GD~T~iGe~G~~------LSGGQkq-RIaLARAlY~~~~--IllLDD~~SaLD~~t~~~I 772 (1459)
.-. .+.-. . -..+.+.|...|.+ -+..+.+ -.++++....+++ +++.++....+-......+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 77767677607999747998872577168743346677631479999999999862756035664034542112599999
Q ss_pred HHHHHCCCCCCCCEEEEECCC
Q ss_conf 999420845689659997378
Q 000503 773 LSNAIMGPHMLQKTRILCTHN 793 (1459)
Q Consensus 773 ~~~~i~g~ll~~kTvIlvTH~ 793 (1459)
.+. + . -...+|++.+|+-
T Consensus 185 ~~~-~-~-~~~~r~i~Vltk~ 202 (299)
T d2akab1 185 AKE-V-D-PQGQRTIGVITKL 202 (299)
T ss_dssp HHH-H-C-TTCSSEEEEEECG
T ss_pred HHH-H-C-CCCCCEEEEEECC
T ss_conf 997-3-8-6778136677026
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=88.37 E-value=0.15 Score=24.85 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 19999889998489999998436989986699979
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1285 (1459)
..|.|+|++||||||+.+.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=88.34 E-value=0.13 Score=25.35 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 919999889998489999998436989986699
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1459)
.-+|||.|+.|||||||+..|.+.+....-+|-
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~va 86 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 86 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 328974389999899999999999975698332
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.28 E-value=0.14 Score=25.15 Aligned_cols=24 Identities=42% Similarity=0.708 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999988999848999999843698
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
.|.|+|||||||+||.+.|..-.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.27 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9748919999889998489999998436
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
-+++|+.+-|.|++|||||++..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.1 Score=26.22 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986385
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
+|..+.++|+.||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.06 E-value=0.16 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999863855
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
+.-+++|.|+.||||||+++.|..++.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.99 E-value=0.16 Score=24.75 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999968998478999998638557
Q 000503 637 GSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 637 G~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
...+.+.||.||||||+.++|.+++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.92 E-value=0.3 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999863855
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.88 E-value=0.22 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 409969999968998478999998638557
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
+++|+++.|.|+.|+|||+|..-++-....
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 628859999917999989999999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=87.86 E-value=0.25 Score=23.02 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489199998899984899999984369
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
|+|-+|.|+|+.||||||+.+.|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=87.80 E-value=0.19 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998899984899999984369
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.79 E-value=0.21 Score=23.65 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986385
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.72 E-value=0.22 Score=23.50 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC--CCCCCHHHHHCCCC
Q ss_conf 99699999689984789999986385578708997090999858987--77877889862599
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW--ILSGTIRDNILFGK 696 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pw--l~n~TIreNIlfg~ 696 (1459)
+|.+++|-|+.||||||+.+.|...+... |. ......++|+ -...-+|+....+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~ 57 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIK 57 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 98789998998887999999999999967-99-----73998329899611445589884621
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=0.23 Score=23.33 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.60 E-value=0.19 Score=24.08 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999863855
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.58 E-value=0.2 Score=23.80 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.++|+||+||||+|+.+.++-+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.57 E-value=0.52 Score=20.44 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
-++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.57 E-value=0.22 Score=23.54 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|+|++.+|||||+++|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.46 Score=20.91 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
-++|+|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=87.39 E-value=0.54 Score=20.37 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=27.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9748919999889998489999998436989986699979748
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288 (1459)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1288 (1459)
.+++...+-+.||.|+|||++++++.+.+... -+.+++-++
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 99988867866899888228999999982998--799886994
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.35 E-value=0.23 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
-++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.20 E-value=0.2 Score=23.86 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000503 639 LVAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ail 658 (1459)
+++|+|++||||||+.+.+-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.18 E-value=0.55 Score=20.28 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=9.8
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q ss_conf 19999889998489999998
Q 000503 1251 TQVGIVGRTGAGKSSILNAL 1270 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L 1270 (1459)
..+.+||+||+||||.+.=|
T Consensus 12 ~vi~lvGptGvGKTTTiAKL 31 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKL 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999899999889999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.13 E-value=0.23 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
.|||+|+..+|||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.11 E-value=0.24 Score=23.28 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000503 639 LVAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ail 658 (1459)
+++|+|+.||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.01 E-value=0.16 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999863855
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.00 E-value=0.22 Score=23.56 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689984789999986385
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
=-++++|..|||||||++.+.|.-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989899999996688
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.99 E-value=0.15 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999889998489999998436
Q 000503 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.13 Score=25.34 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 891999988999848999999843698
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=86.84 E-value=0.15 Score=24.83 Aligned_cols=21 Identities=57% Similarity=0.811 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999889998489999998436
Q 000503 1253 VGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1253 vgIvGrTGSGKSTLl~~L~rl 1273 (1459)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.75 E-value=0.28 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09969999968998478999998638557
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=86.69 E-value=0.58 Score=20.08 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
Q ss_conf 89199998899984899999984369899866999797489
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII 1289 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~ 1289 (1459)
.+..+.+||+||+||||.+.=|...+.-.+-+|.+=..|..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~ 45 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 45 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 97799998999998899999999999977990799981366
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.68 E-value=0.25 Score=23.02 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
Q ss_conf 740996999996899847899999863855787089970909998589
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~ 680 (1459)
-+|+|.++.+.|+.|||||||+..+..+.....| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.59 E-value=0.54 Score=20.33 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=22.8
Q ss_pred EEECEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 000014740996999996899847899999863
Q 000503 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1459)
Q Consensus 627 L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailG 659 (1459)
++.--+ .-.|.=+.+.|++|+||||+...++.
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=86.59 E-value=0.24 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=86.52 E-value=0.25 Score=23.08 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19999889998489999998436
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=86.52 E-value=0.59 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=15.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998899984899999984369
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
..+.++|++|+||||.+.-|...+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.48 E-value=0.26 Score=22.96 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|+.|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.47 E-value=0.35 Score=21.92 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998899984899999984369899866
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1280 (1459)
++++||...||||||+++|+|.--...|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~ 54 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGS 54 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 59998189897999999996899788789
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.35 E-value=0.6 Score=19.95 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 974891999988999848999999843698
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
.+++..-+-+.|++|+|||++++++.+-..
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.28 E-value=0.56 Score=20.23 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++++|..|+|||||++.++++-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.28 E-value=0.61 Score=19.93 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHH
Q ss_conf 4997799856676989997999999999835--9947998525813675
Q 000503 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1420 (1459)
Q Consensus 1374 r~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHrl~ti~ 1420 (1459)
.+..++++||.-.+-|++--..+-..+-+++ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.26 E-value=0.18 Score=24.16 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998899984899999984369
Q 000503 1253 VGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1253 vgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
|.|+|||||||+||.+.|..-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.19 E-value=0.27 Score=22.83 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 891999988999848999999843698998669997
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1459)
+...|.|+|+.||||||+...|..-+ |-+.|+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.16 E-value=0.31 Score=22.34 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 99699999689984789999986385578708
Q 000503 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1459)
Q Consensus 636 ~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~ 667 (1459)
+|.+++|-|+-||||||+.+.|.-.+.. +|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.12 E-value=0.28 Score=22.68 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|+|.+.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.09 E-value=0.28 Score=22.62 Aligned_cols=21 Identities=38% Similarity=0.784 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|..|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.07 E-value=0.28 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++|+|+.|+|||||++.+++.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.99 E-value=0.1 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=29.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCC
Q ss_conf 6999996899847899999863855787089970909998589877
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl 683 (1459)
-+++|.|++||||||+.+++...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.96 E-value=0.29 Score=22.53 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.|+|||||++.+.+.-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.89 E-value=0.36 Score=21.78 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899984899999984369
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=85.86 E-value=0.27 Score=22.87 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
||.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=85.81 E-value=0.29 Score=22.60 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1999988999848999999843698
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
..|-++|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.69 E-value=0.31 Score=22.31 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=85.42 E-value=0.41 Score=21.34 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19999889998489999998436
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
=||.++|+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.37 E-value=0.37 Score=21.71 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998478999998638557
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
++|+|.+.+|||||+.+|+|....
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 999972488699999999704121
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.31 E-value=0.28 Score=22.73 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489199998899984899999984369
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
++.-||.++|++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.29 E-value=0.25 Score=23.13 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=19.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4099699999689984789999986385
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++.++.|.||.||||||..+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.18 E-value=0.37 Score=21.72 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09969999968998478999998638557
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
..+..++|.||.|+|||||+..++-+...
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~~ 55 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELNL 55 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 05987999869998299999999997799
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.06 E-value=0.33 Score=22.15 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1999988999848999999843
Q 000503 1251 TQVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~r 1272 (1459)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.74 E-value=0.35 Score=21.86 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|+.|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.73 E-value=0.38 Score=21.56 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1999988999848999999843698
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
..|.+||++||||||+.+.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.60 E-value=0.55 Score=20.25 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=16.5
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4099699999689984789999986
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ail 658 (1459)
.-.|.=+.+.|++|+||||+...++
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999998089999999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.56 E-value=0.31 Score=22.33 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++++|+.|+|||||++.+.+.-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.51 E-value=0.35 Score=21.87 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|...+|||||++++.|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.48 E-value=0.28 Score=22.73 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999689984789999986
Q 000503 640 VAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ail 658 (1459)
++|+|++|||||||..+|+
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999589899899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=84.41 E-value=0.36 Score=21.80 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4891999988999848999999843
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~r 1272 (1459)
++.=||.+||+.|+|||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=84.38 E-value=0.4 Score=21.44 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000503 639 LVAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ail 658 (1459)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.35 E-value=0.3 Score=22.40 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 891999988999848999999843698
Q 000503 1249 GGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1249 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.28 E-value=0.74 Score=19.24 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
-++|||-..+|||||++++.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=84.21 E-value=0.36 Score=21.82 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19999889998489999998436
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
=.|||+|..||||||+...|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.12 E-value=0.43 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999968998478999998638557
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
....+.||.|+||||+..++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.03 E-value=0.4 Score=21.41 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.|+|||||++.+++.-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.02 E-value=0.39 Score=21.46 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1999988999848999999843698
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
-.|+|-|..||||||+++.|.+-+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.02 E-value=0.39 Score=21.54 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19999889998489999998436
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
-||+++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.92 E-value=0.18 Score=24.27 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
-++++|++++|||||+++|.|+-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.73 E-value=0.47 Score=20.80 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.|+|||||++.+.+.-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=0.77 Score=19.07 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|+.|+|||||++.+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=83.47 E-value=0.5 Score=20.61 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=30.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 48919999889998489999998436989--986699979748
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1288 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di 1288 (1459)
++|..|-+.|.+||||||+.+.|...+.. ..-.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.39 E-value=0.45 Score=21.02 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++++|..|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.25 E-value=0.46 Score=20.91 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 9999968998478999998638557870
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G 666 (1459)
-..+.||.|+||||+.+++..|+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.09 E-value=0.52 Score=20.51 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
Q ss_conf 09969999968998478999998638557870899709099985898
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~p 681 (1459)
+++..++++||+|+||||.+.-|.-.+. ..|. +++.+.=+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~-----kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGK-----KVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTC-----CEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC-----CEEEEEECC
T ss_conf 9977999989999988999999999999-7799-----079998136
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.03 E-value=0.41 Score=21.36 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=26.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 740996999996899847899999863855
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.+|++...++.||.|+|||++.+++.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=83.01 E-value=0.37 Score=21.69 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=19.4
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 40996999996899847899999863855
Q 000503 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 634 i~~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.++|.++.+.|+.|||||||.+.++..+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=83.01 E-value=0.39 Score=21.51 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9199998899984899999984369
Q 000503 1250 GTQVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
.-+|||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.99 E-value=0.42 Score=21.22 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|+|++++|||||+.+|++..
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999478984999999999985
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.99 E-value=0.52 Score=20.46 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899847899999863855
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
++++|..|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.93 E-value=0.48 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|+||.||||||+.+.|.-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.88 E-value=0.32 Score=22.24 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=82.85 E-value=0.49 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.81 E-value=0.49 Score=20.68 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998638557
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
+++|.|..||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=82.80 E-value=0.47 Score=20.81 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|+.|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.74 E-value=0.49 Score=20.66 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
.++|-||.||||||..+.|.-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.71 E-value=0.52 Score=20.49 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
-++|+|..|+|||||++.+++.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.67 E-value=0.52 Score=20.45 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCC
Q ss_conf 19999889998489999998436989986699979748999957771562898077767775
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1312 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~g 1312 (1459)
=.|||.|.+|||||||...|...+.-.. .....+.++++|.+-.+.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~~----------------~~~~~v~~iS~DdfY~t~ 73 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHLMEKY----------------GGEKSIGYASIDDFYLTH 73 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH----------------GGGSCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHH----------------CCCCCEEEECCCCCCCCH
T ss_conf 8998379987889999999999999872----------------778606763567777888
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.66 E-value=0.49 Score=20.70 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|+|+.|+|||||++.+++.-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.62 E-value=0.5 Score=20.63 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|+.|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.58 E-value=0.66 Score=19.64 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998478999998638557
Q 000503 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
++++|..|+|||||++.+.+.-..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999998992999999999728677
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.45 E-value=0.42 Score=21.22 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.|+|||||++.+.+.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.40 E-value=0.42 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689984789999986385
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
--++|||...+|||||++++.+.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=82.38 E-value=0.025 Score=31.32 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.5
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20112499748919999889998489999998436
Q 000503 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1459)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl 1273 (1459)
..++.++...+| ...|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.35 E-value=0.43 Score=21.12 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 999996899847899999863855787089970
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~ 671 (1459)
.+.|-|+.||||||+++.+..++....+.+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~ 40 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 40 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999988866789999999999865699769982
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.30 E-value=0.84 Score=18.77 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=33.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 97489199998899984899999984369899866-9997974
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ-ILVDGLN 1287 (1459)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~-I~IDG~d 1287 (1459)
-+++|..+-|.|++||||||+..-+..-..-..|. +.||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=82.24 E-value=0.49 Score=20.70 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.53 Score=20.41 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
.|||+|..||||||..+.|-.
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.11 E-value=0.44 Score=21.08 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=50.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH-HHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 99998899984899999984369899866999797489999577-71562898077767775478831869999927789
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~ 1330 (1459)
+|.|.|+.||||||+...|..-+ |-..|+ ..+ +|..+ +...-....+.+.++.+....++...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~----~~~~is--------~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 68 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY----QLAHIS--------AGDLLRAEI----AAGSENGKRAKEFMEKGQLVPDEIVV 68 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH----CCEECC--------HHHHHHHHH----HHTCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEE--------HHHHHHHHH----HCCCHHHHHHHHHHHCCCCCCCEEEH
T ss_conf 99998899999899999999987----991785--------007888764----11337899999998668854321210
Q ss_pred HHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999990099999968994054169999993599999999987249977998566
Q 000503 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384 (1459)
Q Consensus 1331 ~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEa 1384 (1459)
..+...-........|+ +-++ +..-..|...+.+...+...+++||-+
T Consensus 69 ~~~~~~~~~~~~~~~~~---vid~---~~~~~~q~~~l~~~~~~p~~~i~L~~~ 116 (189)
T d1zaka1 69 NMVKERLRQPDAQENGW---LLDG---YPRSYSQAMALETLEIRPDTFILLDVP 116 (189)
T ss_dssp HHHHHHHHSHHHHHTCE---EEES---CCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred HHHHHHHHHCCCCCCCE---EEEC---CCHHHHHHHHHHHCCCCCCHHEEECHH
T ss_conf 35666765301446737---9606---212467775443013451121011100
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.90 E-value=0.45 Score=20.96 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++++|..|+|||||++.++++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.86 E-value=0.9 Score=18.55 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
-++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.85 E-value=0.52 Score=20.47 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.72 E-value=0.66 Score=19.64 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 5201124997489199998899984899999984
Q 000503 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1271 (1459)
Q Consensus 1238 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~ 1271 (1459)
.+|.+ -+++|+.+-|.|++|||||++..-+.
T Consensus 25 ~ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 25 TLLGG---GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp HHHTS---SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 63179---98699699998389998899999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.63 E-value=0.57 Score=20.15 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 9999689984789999986-3855
Q 000503 640 VAVIGEVGSGKSSLLNSIL-GEMM 662 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ail-Ge~~ 662 (1459)
++++|..|+|||||++.+. |+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999992989999999739998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=81.58 E-value=0.62 Score=19.85 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899984899999984369
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
.|||+|...+|||||++.|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=81.58 E-value=0.83 Score=18.80 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 19999889998489999998436989986699979
Q 000503 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1285 (1459)
.-+-+.||+|+||||+..+|.+-+. .+-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 7999889799889999999999865--15489832
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.50 E-value=0.52 Score=20.45 Aligned_cols=125 Identities=19% Similarity=0.341 Sum_probs=66.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 74099699999689984789999986385578708997090999858987778778898625999997889999998421
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~aC~L 712 (1459)
-+|.|.++-|.|+.|||||+|...+..+.....| .++|..-+- .+|+++ .+.+.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE~---------------~~~~~~----a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAEH---------------ALDPVY----ARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESSC---------------CCCHHH----HHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECCC---------------CCCHHH----HHHHCC
T ss_conf 8667547898058765227999999999970799------899998876---------------589999----998289
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCEEEECCCCCCC-----CHH-------HHHHHHHHH--
Q ss_conf 1557410699753026797656708999999999881--499988870775441-----499-------999999994--
Q 000503 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY--HGSDIYMLDDVLSAV-----DAQ-------VARWILSNA-- 776 (1459)
Q Consensus 713 ~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY--~~~~IllLDD~~SaL-----D~~-------t~~~I~~~~-- 776 (1459)
+.| .+ .+-. .-++=| + +.++..+- .+.+++++|-..+-. +.. ...+.+...
T Consensus 108 d~d--~i------~~~~---~~~~E~-~-~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr 174 (268)
T d1xp8a1 108 NTD--EL------LVSQ---PDNGEQ-A-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 174 (268)
T ss_dssp CGG--GC------EEEC---CSSHHH-H-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred CCH--HE------EEEC---CCCHHH-H-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 812--37------9974---899999-9-999999986589719999454545538887165341057799999999999
Q ss_pred -HCCCCCCCCEEEEECCCCC
Q ss_conf -2084568965999737820
Q 000503 777 -IMGPHMLQKTRILCTHNVQ 795 (1459)
Q Consensus 777 -i~g~ll~~kTvIlvTH~~~ 795 (1459)
+...+.+.++.+++||++.
T Consensus 175 ~l~~~~~~~~~~vi~tNQv~ 194 (268)
T d1xp8a1 175 KLTAILSKTGTAAIFINQVR 194 (268)
T ss_dssp HHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHCCCEEEEEEEEE
T ss_conf 97766643297699996786
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.40 E-value=0.54 Score=20.37 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=33.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
Q ss_conf 7409969999968998478999998638557870899709099985898
Q 000503 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1459)
Q Consensus 633 ~i~~G~l~~IvG~vGSGKSTLL~ailGe~~~~~G~v~~~g~iayv~Q~p 681 (1459)
-+|.|.++.+.|+.|||||+++..+..+.....|. +.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~------~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV------AAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE------EEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE------EEEEECCC
T ss_conf 86663369996488748899999999987548988------99998976
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.29 E-value=0.52 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0996999996899847899999863855
Q 000503 635 PKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 635 ~~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
|++.+ .++||+|||||.|.+++..++.
T Consensus 48 ~~~~i-Ll~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNI-LMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCE-EEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHCCC
T ss_conf 98669-9989999888899999862132
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.26 E-value=0.58 Score=20.09 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4891999988999848999999843698
Q 000503 1248 EGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1459)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1275 (1459)
+.|-.|+|.|.-||||||++..|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.25 E-value=0.69 Score=19.48 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
||.++|..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.19 E-value=0.57 Score=20.12 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999988999848999999843
Q 000503 1252 QVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~r 1272 (1459)
||.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.16 E-value=0.39 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998638557
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~~ 663 (1459)
...+.||.|+||||+.++++.++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=81.07 E-value=0.5 Score=20.59 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986385
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
.++++|+.||||||+.+.+.-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.05 E-value=0.44 Score=21.03 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=31.0
Q ss_pred EEEECCEEECCCCCCCCCCCCEEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99972258605788533355400001474099699999689984789999986385
Q 000503 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
|+=+++.+....+ .-..|+.++ .|=.+++|+|+.++|||+||+.++|..
T Consensus 8 i~~~~~~l~~~~e----~l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 8 IENTNGRLMANPE----ALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEETTEEEECHH----HHHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEECHH----HHHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9769994998999----999997079---987999988999997999999980998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.04 E-value=0.62 Score=19.88 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|..|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.02 E-value=0.51 Score=20.55 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|..|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=80.88 E-value=0.58 Score=20.07 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.7
Q ss_pred ECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0014740996999996899847899999863855
Q 000503 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 629 ~isl~i~~G~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
|.=+.+-+|+-.+|.|+.|+|||+|+..|.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=80.85 E-value=0.76 Score=19.12 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=68.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCC
Q ss_conf 97489199998899984899999984-36989986699979748999957771562898077767775478831869999
Q 000503 1246 TIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1324 (1459)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~-rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~NLdp~~~~ 1324 (1459)
-+++|+.+-|.|++|+|||++..-+. .........+.+.. ...+....+ ....-++.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~------------------~~~~~~~~- 79 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDII------------------KNARSFGW- 79 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHH------------------HHHGGGTC-
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHH------------------HHHHHCCC-
T ss_conf 99698399999479999999999999999985688742012---667999999------------------99998499-
Q ss_pred CHHHHHHHHHHHCHHHHHHHC---CCCH-HHHCCCCCCCHH-HHHHHHHHHHHCC--CCCEEEEECCCCCCCH-----HH
Q ss_conf 927789999990099999968---9940-541699999935-9999999998724--9977998566769899-----97
Q 000503 1325 DDLKIWSVLEKCHVKEEVEAV---GLET-FVKESGISFSVG-QRQLICLARALLK--SSKVLCLDECTANVDA-----QT 1392 (1459)
Q Consensus 1325 sd~ei~~aL~~~~L~~~i~~l---gLdt-~i~e~G~~LS~G-QrQll~LARAlLr--~~~ILiLDEaTS~lD~-----~T 1392 (1459)
. ..+.+... ..+. ...+.-..+... ...++.-.+..++ +++++++|-.++-.+. ..
T Consensus 80 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~ 147 (242)
T d1tf7a1 80 D------------LAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVV 147 (242)
T ss_dssp C------------HHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHH
T ss_pred C------------HHHHHHHCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 8------------4898871430244421033544443024589999999999886312220020788998760572678
Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCHHH---------HH-HCCEEEEEE
Q ss_conf 99999999983-599479985258136---------75-309799992
Q 000503 1393 ASILQNAISSE-CKGMTVITIAHRIST---------VL-NMDEILILD 1429 (1459)
Q Consensus 1393 e~~i~~~i~~~-f~~~TvI~IaHrl~t---------i~-~~DrI~vl~ 1429 (1459)
.+.+.+.++.. ..++|++.++|.... .. .+|.|+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 148 RRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999998639716884210255422246762335362999988
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.82 E-value=0.67 Score=19.57 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998899984899999984369899866999797489999577715628980777677754788318699999277899
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~ 1331 (1459)
+|.|.|+.||||||..+.|..-+ |-..|+- -+-+|..+ .++...+.-.+.+.+.-+....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHHCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC--C-EEEEECC
Q ss_conf 99990099999968-9940541699999935999999999872499--7-7998566
Q 000503 1332 VLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSS--K-VLCLDEC 1384 (1459)
Q Consensus 1332 aL~~~~L~~~i~~l-gLdt~i~e~G~~LS~GQrQll~LARAlLr~~--~-ILiLDEa 1384 (1459)
.+... +....... .-+..+-++ +...+.|.-.+.+.+-... . ++++|.+
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~g---~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAANAQKNKFLIDG---FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHCTTCCEEEEES---CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHHHCCCCEEECC---CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-412100011245111011---030489999986442105543389962476
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.70 E-value=0.55 Score=20.28 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999863855
Q 000503 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 638 ~l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
++++|.|+.||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=80.57 E-value=0.53 Score=20.38 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1999988999848999999843
Q 000503 1251 TQVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~r 1272 (1459)
=||.++|+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.48 E-value=0.64 Score=19.71 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986385
Q 000503 640 VAVIGEVGSGKSSLLNSILGEM 661 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe~ 661 (1459)
++|+|..|+|||||++.+++.-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=0.66 Score=19.66 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999863855
Q 000503 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe~~ 662 (1459)
+++|-||.||||||..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.37 E-value=0.64 Score=19.72 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998899984899999984369
Q 000503 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1459)
Q Consensus 1252 kvgIvGrTGSGKSTLl~~L~rl~ 1274 (1459)
+|.|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=80.33 E-value=0.7 Score=19.45 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=9.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000503 639 LVAVIGEVGSGKSSLLNSIL 658 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ail 658 (1459)
+++|+|+.||||||..+.+.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.24 E-value=0.8 Score=18.97 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 52011249974891999988999848999999843
Q 000503 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272 (1459)
Q Consensus 1238 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r 1272 (1459)
..|.+ -+++|+.+-|.|++|+|||++..-+..
T Consensus 28 ~~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 28 KLLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 73169---976897999988998878899999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.14 E-value=0.72 Score=19.31 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
-++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.14 E-value=0.5 Score=20.63 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC---CCCCCCCEE
Q ss_conf 1999988999848999999843---698998669
Q 000503 1251 TQVGIVGRTGAGKSSILNALFR---LTPICGGQI 1281 (1459)
Q Consensus 1251 ekvgIvGrTGSGKSTLl~~L~r---l~~~~~G~I 1281 (1459)
-+|+|-||.||||||+...|.. +...+.|.+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 5999789998798999999999969947877999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.09 E-value=0.58 Score=20.06 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998638
Q 000503 639 LVAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 639 l~~IvG~vGSGKSTLL~ailGe 660 (1459)
-++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.05 E-value=0.73 Score=19.27 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998638
Q 000503 640 VAVIGEVGSGKSSLLNSILGE 660 (1459)
Q Consensus 640 ~~IvG~vGSGKSTLL~ailGe 660 (1459)
++++|..|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|